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Conserved domains on  [gi|2563385820|pdb|7YMI|x]
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Chain x, Photosystem II reaction center X protein

Protein Classification

photosystem II reaction center X protein( domain architecture ID 10535055)

photosystem II reaction center X protein is involved in the binding and/or turnover of quinones at the Q(B) site of photosystem II

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PsbX pfam06596
Photosystem II reaction centre X protein (PsbX); This family consists of several photosystem ...
 3-39 5.66e-11

Photosystem II reaction centre X protein (PsbX); This family consists of several photosystem II reaction centre X protein (PsbX) sequences from both prokaryotes and eukaryotes.


:

Pssm-ID: 429023  Cd Length: 37  Bit Score: 49.91  E-value: 5.66e-11
                         10        20        30
                 ....*....|....*....|....*....|....*..
7YMI_x         3 ITPSLQGFFYSILFGAIVLGLLGGGFIFFSQKDKIVR 39
Cdd:pfam06596  1 MTPSLANFLWSLVAGAVVVIPIAGALIFVSQKDKVQR 37
 
Name Accession Description Interval E-value
PsbX pfam06596
Photosystem II reaction centre X protein (PsbX); This family consists of several photosystem ...
 3-39 5.66e-11

Photosystem II reaction centre X protein (PsbX); This family consists of several photosystem II reaction centre X protein (PsbX) sequences from both prokaryotes and eukaryotes.


Pssm-ID: 429023  Cd Length: 37  Bit Score: 49.91  E-value: 5.66e-11
                         10        20        30
                 ....*....|....*....|....*....|....*..
7YMI_x         3 ITPSLQGFFYSILFGAIVLGLLGGGFIFFSQKDKIVR 39
Cdd:pfam06596  1 MTPSLANFLWSLVAGAVVVIPIAGALIFVSQKDKVQR 37
PsbX COG5733
Photosystem II reaction center protein X, PsbX [Energy production and conversion]; Photosystem ...
 3-40 8.94e-10

Photosystem II reaction center protein X, PsbX [Energy production and conversion]; Photosystem II reaction center protein X, PsbX is part of the Pathway/BioSystem: Photosystem II


Pssm-ID: 444443  Cd Length: 39  Bit Score: 46.94  E-value: 8.94e-10
                       10        20        30
               ....*....|....*....|....*....|....*....
7YMI_x       3 ITPSLQGFFYSILFGAIVLGLLG-GGFIFFSQKDKIVRR 40
Cdd:COG5733  1 MTPSLANFLWSLLAGAVIVVIPAtVALIFISQKDKIQRS 39
psbX CHL00114
photosystem II protein X; Reviewed
 3-39 7.13e-03

photosystem II protein X; Reviewed


Pssm-ID: 100224  Cd Length: 39  Bit Score: 29.82  E-value: 7.13e-03
                        10        20        30
                ....*....|....*....|....*....|....*...
7YMI_x        3 ITPSLQGFFYSILFGAIVLGL-LGGGFIFFSQKDKIVR 39
Cdd:CHL00114  1 MTPSLSAFINSLLLGAIIVVIpITLALLFVSQKDRTTR 38
 
Name Accession Description Interval E-value
PsbX pfam06596
Photosystem II reaction centre X protein (PsbX); This family consists of several photosystem ...
 3-39 5.66e-11

Photosystem II reaction centre X protein (PsbX); This family consists of several photosystem II reaction centre X protein (PsbX) sequences from both prokaryotes and eukaryotes.


Pssm-ID: 429023  Cd Length: 37  Bit Score: 49.91  E-value: 5.66e-11
                         10        20        30
                 ....*....|....*....|....*....|....*..
7YMI_x         3 ITPSLQGFFYSILFGAIVLGLLGGGFIFFSQKDKIVR 39
Cdd:pfam06596  1 MTPSLANFLWSLVAGAVVVIPIAGALIFVSQKDKVQR 37
PsbX COG5733
Photosystem II reaction center protein X, PsbX [Energy production and conversion]; Photosystem ...
 3-40 8.94e-10

Photosystem II reaction center protein X, PsbX [Energy production and conversion]; Photosystem II reaction center protein X, PsbX is part of the Pathway/BioSystem: Photosystem II


Pssm-ID: 444443  Cd Length: 39  Bit Score: 46.94  E-value: 8.94e-10
                       10        20        30
               ....*....|....*....|....*....|....*....
7YMI_x       3 ITPSLQGFFYSILFGAIVLGLLG-GGFIFFSQKDKIVRR 40
Cdd:COG5733  1 MTPSLANFLWSLLAGAVIVVIPAtVALIFISQKDKIQRS 39
psbX CHL00114
photosystem II protein X; Reviewed
 3-39 7.13e-03

photosystem II protein X; Reviewed


Pssm-ID: 100224  Cd Length: 39  Bit Score: 29.82  E-value: 7.13e-03
                        10        20        30
                ....*....|....*....|....*....|....*...
7YMI_x        3 ITPSLQGFFYSILFGAIVLGL-LGGGFIFFSQKDKIVR 39
Cdd:CHL00114  1 MTPSLSAFINSLLLGAIIVVIpITLALLFVSQKDRTTR 38
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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