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Conserved domains on  [gi|2463612032|pdb|8CRX|0]
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Chain 0, 50S ribosomal protein L33

Protein Classification

50S ribosomal protein L33( domain architecture ID 10011455)

50S ribosomal protein L33 is a component of the large ribosomal subunit 50S

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RpmG COG0267
Ribosomal protein L33 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L33 ...
 7-56 4.64e-22

Ribosomal protein L33 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L33 is part of the Pathway/BioSystem: Ribosome 50S subunit


:

Pssm-ID: 440037  Cd Length: 52  Bit Score: 79.05  E-value: 4.64e-22
                       10        20        30        40        50
               ....*....|....*....|....*....|....*....|....*....|
8CRX_0       7 DVRPKITLACTECKERNYITKKNRRNNPDRMEMAKFCPRCRKHTAHRETR 56
Cdd:COG0267  3 GMREKITLACTECKGRNYTTTKNKRNTPERLELKKYCPKCRKHTLHKETK 52
 
Name Accession Description Interval E-value
RpmG COG0267
Ribosomal protein L33 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L33 ...
 7-56 4.64e-22

Ribosomal protein L33 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L33 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440037  Cd Length: 52  Bit Score: 79.05  E-value: 4.64e-22
                       10        20        30        40        50
               ....*....|....*....|....*....|....*....|....*....|
8CRX_0       7 DVRPKITLACTECKERNYITKKNRRNNPDRMEMAKFCPRCRKHTAHRETR 56
Cdd:COG0267  3 GMREKITLACTECKGRNYTTTKNKRNTPERLELKKYCPKCRKHTLHKETK 52
rpmG PRK00504
50S ribosomal protein L33; Validated
 7-56 8.55e-22

50S ribosomal protein L33; Validated


Pssm-ID: 234783  Cd Length: 50  Bit Score: 78.42  E-value: 8.55e-22
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|
8CRX_0        7 DVRPKITLACTECKERNYITKKNRRNNPDRMEMAKFCPRCRKHTAHRETR 56
Cdd:PRK00504  1 MMRKKITLACTECKSRNYTTTKNKKNTPERLELKKFCPRCNKHTLHKETK 50
Ribosomal_L33 pfam00471
Ribosomal protein L33;
11-56 1.10e-19

Ribosomal protein L33;


Pssm-ID: 425701  Cd Length: 46  Bit Score: 72.84  E-value: 1.10e-19
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*.
8CRX_0        11 KITLACTECKERNYITKKNRRNNPDRMEMAKFCPRCRKHTAHRETR 56
Cdd:pfam00471  1 KITLACTECKGRNYTTTKNKKNTPERLELKKYCPKCRKHTLHKETK 46
rpmG_bact TIGR01023
ribosomal protein L33, bacterial type; This model describes bacterial ribosomal protein L33 ...
 1-56 8.14e-14

ribosomal protein L33, bacterial type; This model describes bacterial ribosomal protein L33 and its chloroplast and mitochondrial equivalents. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 273399  Cd Length: 54  Bit Score: 58.23  E-value: 8.14e-14
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
8CRX_0         1 MAKKSGdvRPKITLACTECKERNYITKKNRRNNPDRMEMAKFCPRCRKHTAHRETR 56
Cdd:TIGR01023  1 MAKKGA--RELIRLVCTACTGINYTTTKNRRNKPEKLELRKYCPVCRKHVLHKEAK 54
 
Name Accession Description Interval E-value
RpmG COG0267
Ribosomal protein L33 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L33 ...
 7-56 4.64e-22

Ribosomal protein L33 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L33 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440037  Cd Length: 52  Bit Score: 79.05  E-value: 4.64e-22
                       10        20        30        40        50
               ....*....|....*....|....*....|....*....|....*....|
8CRX_0       7 DVRPKITLACTECKERNYITKKNRRNNPDRMEMAKFCPRCRKHTAHRETR 56
Cdd:COG0267  3 GMREKITLACTECKGRNYTTTKNKRNTPERLELKKYCPKCRKHTLHKETK 52
rpmG PRK00504
50S ribosomal protein L33; Validated
 7-56 8.55e-22

50S ribosomal protein L33; Validated


Pssm-ID: 234783  Cd Length: 50  Bit Score: 78.42  E-value: 8.55e-22
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|
8CRX_0        7 DVRPKITLACTECKERNYITKKNRRNNPDRMEMAKFCPRCRKHTAHRETR 56
Cdd:PRK00504  1 MMRKKITLACTECKSRNYTTTKNKKNTPERLELKKFCPRCNKHTLHKETK 50
Ribosomal_L33 pfam00471
Ribosomal protein L33;
11-56 1.10e-19

Ribosomal protein L33;


Pssm-ID: 425701  Cd Length: 46  Bit Score: 72.84  E-value: 1.10e-19
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*.
8CRX_0        11 KITLACTECKERNYITKKNRRNNPDRMEMAKFCPRCRKHTAHRETR 56
Cdd:pfam00471  1 KITLACTECKGRNYTTTKNKKNTPERLELKKYCPKCRKHTLHKETK 46
rpmG PRK00595
50S ribosomal protein L33; Validated
 7-56 2.76e-19

50S ribosomal protein L33; Validated


Pssm-ID: 179075  Cd Length: 53  Bit Score: 72.15  E-value: 2.76e-19
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|
8CRX_0        7 DVRPKITLACTECKERNYITKKNRRNNPDRMEMAKFCPRCRKHTAHRETR 56
Cdd:PRK00595  4 GMRVKIKLESTEGTGRFYTTTKNKRNTPEKLELKKYDPVLRKHVLHKETK 53
rpl33 CHL00104
ribosomal protein L33
 4-54 1.63e-14

ribosomal protein L33


Pssm-ID: 177033  Cd Length: 66  Bit Score: 60.37  E-value: 1.63e-14
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|.
8CRX_0        4 KSGDVRPKITLACTECKERN----------YITKKNRRNNPDRMEMAKFCPRCRKHTAHRE 54
Cdd:CHL00104  3 KGKDVRVTVILECTSCVRNGvnkestgisrYITQKNRHNTPNRLELKKFCPYCYKHTIHKE 63
rpmG_bact TIGR01023
ribosomal protein L33, bacterial type; This model describes bacterial ribosomal protein L33 ...
 1-56 8.14e-14

ribosomal protein L33, bacterial type; This model describes bacterial ribosomal protein L33 and its chloroplast and mitochondrial equivalents. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 273399  Cd Length: 54  Bit Score: 58.23  E-value: 8.14e-14
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
8CRX_0         1 MAKKSGdvRPKITLACTECKERNYITKKNRRNNPDRMEMAKFCPRCRKHTAHRETR 56
Cdd:TIGR01023  1 MAKKGA--RELIRLVCTACTGINYTTTKNRRNKPEKLELRKYCPVCRKHVLHKEAK 54
Mcm2 COG1241
DNA replicative helicase MCM subunit Mcm2, Cdc46/Mcm family [Replication, recombination and ...
 1-49 2.43e-03

DNA replicative helicase MCM subunit Mcm2, Cdc46/Mcm family [Replication, recombination and repair];


Pssm-ID: 440854 [Multi-domain]  Cd Length: 682  Bit Score: 33.62  E-value: 2.43e-03
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*....
8CRX_0        1 MAKKSGDVRPKITLACTECKERNYITKKNRRNnpDRMEMAKFCPRCRKH 49
Cdd:COG1241 113 IVRKATEVKPKITEAAFECPRCGTETYVPQTG--EKLQEPHECPGCGRQ 159
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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