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Conserved domains on  [gi|2463612031|pdb|8CRX|z]
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Chain z, 50S ribosomal protein L32

Protein Classification

bL32 family ribosomal protein( domain architecture ID 10001226)

bL32 family ribosomal protein such as bacterial 50S ribosomal protein L32, Reclinomonas americana mitochondrial 60S ribosomal protein L32, and Schizosaccharomyces pombe mitochondrial 54S ribosomal protein L32

Gene Ontology:  GO:0015934|GO:0003735|GO:0006412
PubMed:  24524803
SCOP:  4000508

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RpmF COG0333
Ribosomal protein L32 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L32 ...
 2-63 6.46e-20

Ribosomal protein L32 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L32 is part of the Pathway/BioSystem: Ribosome 50S subunit


:

Pssm-ID: 440102  Cd Length: 56  Bit Score: 73.98  E-value: 6.46e-20
                       10        20        30        40        50        60
               ....*....|....*....|....*....|....*....|....*....|....*....|..
8CRX_z       2 AVPKRKMSRSNTRHRRSQWKTVATKLVTCANpaCGEKHLPHTACPSCGGYgpRGdrRQVVEA 63
Cdd:COG0333  1 AVPKRKTSKSRRRKRRSHDKLTAPALVVCPN--CGEPKLPHRVCPSCGYY--KG--RQVIEV 56
 
Name Accession Description Interval E-value
RpmF COG0333
Ribosomal protein L32 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L32 ...
 2-63 6.46e-20

Ribosomal protein L32 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L32 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440102  Cd Length: 56  Bit Score: 73.98  E-value: 6.46e-20
                       10        20        30        40        50        60
               ....*....|....*....|....*....|....*....|....*....|....*....|..
8CRX_z       2 AVPKRKMSRSNTRHRRSQWKTVATKLVTCANpaCGEKHLPHTACPSCGGYgpRGdrRQVVEA 63
Cdd:COG0333  1 AVPKRKTSKSRRRKRRSHDKLTAPALVVCPN--CGEPKLPHRVCPSCGYY--KG--RQVIEV 56
Ribosomal_L32p pfam01783
Ribosomal L32p protein family;
2-54 3.17e-16

Ribosomal L32p protein family;


Pssm-ID: 426430  Cd Length: 56  Bit Score: 64.92  E-value: 3.17e-16
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
8CRX_z         2 AVPKRKMSRSNTRHRRSQWKTVATKLVTCanPACGEKHLPHTACPSCGGYGPR 54
Cdd:pfam01783  1 AVPKRKTSKSRRRKRRAHWKLKAPNLVEC--PNCGELKLPHRVCPSCGYYKGR 51
rpmF_bact TIGR01031
ribosomal protein L32; This protein describes bacterial ribosomal protein L32. The noise ...
 3-62 1.04e-13

ribosomal protein L32; This protein describes bacterial ribosomal protein L32. The noise cutoff is set low enough to include the equivalent protein from mitochondria and chloroplasts. No related proteins from the Archaea nor from the eukaryotic cytosol are detected by this model. This model is a fragment model; the putative L32 of some species shows similarity only toward the N-terminus. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 273404  Cd Length: 55  Bit Score: 58.50  E-value: 1.04e-13
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
8CRX_z         3 VPKRKMSRSNTRHRRSQ-WKTVATKLVTCANpaCGEKHLPHTACPSCGGYgprgDRRQVVE 62
Cdd:TIGR01031  1 VPKRKTSKSRKRKRRSHdAKLTAPTLVVCPN--CGEFKLPHRVCPSCGYY----KGRQVLE 55
rpl32 CHL00152
ribosomal protein L32; Validated
 1-21 2.36e-04

ribosomal protein L32; Validated


Pssm-ID: 214377  Cd Length: 53  Bit Score: 34.62  E-value: 2.36e-04
                        10        20
                ....*....|....*....|.
8CRX_z        1 MAVPKRKMSRSNTRHRRSQWK 21
Cdd:CHL00152  1 MAVPKKRTSKSKKRIRKNIWK 21
 
Name Accession Description Interval E-value
RpmF COG0333
Ribosomal protein L32 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L32 ...
 2-63 6.46e-20

Ribosomal protein L32 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L32 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440102  Cd Length: 56  Bit Score: 73.98  E-value: 6.46e-20
                       10        20        30        40        50        60
               ....*....|....*....|....*....|....*....|....*....|....*....|..
8CRX_z       2 AVPKRKMSRSNTRHRRSQWKTVATKLVTCANpaCGEKHLPHTACPSCGGYgpRGdrRQVVEA 63
Cdd:COG0333  1 AVPKRKTSKSRRRKRRSHDKLTAPALVVCPN--CGEPKLPHRVCPSCGYY--KG--RQVIEV 56
Ribosomal_L32p pfam01783
Ribosomal L32p protein family;
2-54 3.17e-16

Ribosomal L32p protein family;


Pssm-ID: 426430  Cd Length: 56  Bit Score: 64.92  E-value: 3.17e-16
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
8CRX_z         2 AVPKRKMSRSNTRHRRSQWKTVATKLVTCanPACGEKHLPHTACPSCGGYGPR 54
Cdd:pfam01783  1 AVPKRKTSKSRRRKRRAHWKLKAPNLVEC--PNCGELKLPHRVCPSCGYYKGR 51
rpmF_bact TIGR01031
ribosomal protein L32; This protein describes bacterial ribosomal protein L32. The noise ...
 3-62 1.04e-13

ribosomal protein L32; This protein describes bacterial ribosomal protein L32. The noise cutoff is set low enough to include the equivalent protein from mitochondria and chloroplasts. No related proteins from the Archaea nor from the eukaryotic cytosol are detected by this model. This model is a fragment model; the putative L32 of some species shows similarity only toward the N-terminus. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 273404  Cd Length: 55  Bit Score: 58.50  E-value: 1.04e-13
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
8CRX_z         3 VPKRKMSRSNTRHRRSQ-WKTVATKLVTCANpaCGEKHLPHTACPSCGGYgprgDRRQVVE 62
Cdd:TIGR01031  1 VPKRKTSKSRKRKRRSHdAKLTAPTLVVCPN--CGEFKLPHRVCPSCGYY----KGRQVLE 55
rpl32 CHL00152
ribosomal protein L32; Validated
 1-21 2.36e-04

ribosomal protein L32; Validated


Pssm-ID: 214377  Cd Length: 53  Bit Score: 34.62  E-value: 2.36e-04
                        10        20
                ....*....|....*....|.
8CRX_z        1 MAVPKRKMSRSNTRHRRSQWK 21
Cdd:CHL00152  1 MAVPKKRTSKSKKRIRKNIWK 21
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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