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Conserved domains on  [gi|2417999359|pdb|8EQM|h]
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Chain h, Photosystem II reaction center protein H

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PsbH super family cl23793
Photosystem II 10 kDa phosphoprotein; This protein is phosphorylated in a light dependent ...
 17-66 1.39e-18

Photosystem II 10 kDa phosphoprotein; This protein is phosphorylated in a light dependent reaction.


The actual alignment was detected with superfamily member CHL00066:

Pssm-ID: 451548  Cd Length: 73  Bit Score: 71.21  E-value: 1.39e-18
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|
8EQM_h       17 LRKLNSEAGKVVPGWGTAPLMGIMLIALLLFILTILQLYNGTVIVEGIDV 66
Cdd:CHL00066 23 LKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSIILEIYNSSVLLDGISV 72
 
Name Accession Description Interval E-value
psbH CHL00066
photosystem II protein H
 17-66 1.39e-18

photosystem II protein H


Pssm-ID: 177006  Cd Length: 73  Bit Score: 71.21  E-value: 1.39e-18
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|
8EQM_h       17 LRKLNSEAGKVVPGWGTAPLMGIMLIALLLFILTILQLYNGTVIVEGIDV 66
Cdd:CHL00066 23 LKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSIILEIYNSSVLLDGISV 72
PsbH pfam00737
Photosystem II 10 kDa phosphoprotein; This protein is phosphorylated in a light dependent ...
 17-61 4.64e-14

Photosystem II 10 kDa phosphoprotein; This protein is phosphorylated in a light dependent reaction.


Pssm-ID: 425845  Cd Length: 52  Bit Score: 59.38  E-value: 4.64e-14
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*
8EQM_h        17 LRKLNSEAGKVVPGWGTAPLMGIMLIALLLFILTILQLYNGTVIV 61
Cdd:pfam00737  8 LKPLNSEYGKVAPGWGTTPVMGVFMALFAVFLLIILQIYNSSLLL 52
 
Name Accession Description Interval E-value
psbH CHL00066
photosystem II protein H
 17-66 1.39e-18

photosystem II protein H


Pssm-ID: 177006  Cd Length: 73  Bit Score: 71.21  E-value: 1.39e-18
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|
8EQM_h       17 LRKLNSEAGKVVPGWGTAPLMGIMLIALLLFILTILQLYNGTVIVEGIDV 66
Cdd:CHL00066 23 LKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSIILEIYNSSVLLDGISV 72
psbH PRK02624
photosystem II reaction center protein PsbH;
17-66 9.29e-18

photosystem II reaction center protein PsbH;


Pssm-ID: 179451  Cd Length: 64  Bit Score: 68.97  E-value: 9.29e-18
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|
8EQM_h       17 LRKLNSEAGKVVPGWGTAPLMGIMLIALLLFILTILQLYNGTVIVEGIDV 66
Cdd:PRK02624 11 LKPLNSEYGKVVPGWGTTPVMAVFMVLFLVFLLIILQIYNQSLLLQGFSV 60
PLN00055 PLN00055
photosystem II reaction center protein H; Provisional
 17-66 4.28e-16

photosystem II reaction center protein H; Provisional


Pssm-ID: 177686  Cd Length: 73  Bit Score: 65.25  E-value: 4.28e-16
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|
8EQM_h       17 LRKLNSEAGKVVPGWGTAPLMGIMLIALLLFILTILQLYNGTVIVEGIDV 66
Cdd:PLN00055 23 LKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSIILEIYNSSVLLDGISV 72
PsbH pfam00737
Photosystem II 10 kDa phosphoprotein; This protein is phosphorylated in a light dependent ...
 17-61 4.64e-14

Photosystem II 10 kDa phosphoprotein; This protein is phosphorylated in a light dependent reaction.


Pssm-ID: 425845  Cd Length: 52  Bit Score: 59.38  E-value: 4.64e-14
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*
8EQM_h        17 LRKLNSEAGKVVPGWGTAPLMGIMLIALLLFILTILQLYNGTVIV 61
Cdd:pfam00737  8 LKPLNSEYGKVAPGWGTTPVMGVFMALFAVFLLIILQIYNSSLLL 52
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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