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Conserved domains on  [gi|2737423744|pdb|8URX|m]
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Chain m, 50S ribosomal protein L34

Protein Classification

50S ribosomal protein L34( domain architecture ID 10000747)

50S ribosomal protein L34 is involved in the regulation of the polyamine biosynthetic pathway

Gene Ontology:  GO:0005840|GO:0003735|GO:0006412
PubMed:  17086193

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RpmH COG0230
Ribosomal protein L34 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L34 ...
 1-44 1.56e-10

Ribosomal protein L34 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L34 is part of the Pathway/BioSystem: Ribosome 50S subunit


:

Pssm-ID: 440000  Cd Length: 44  Bit Score: 49.32  E-value: 1.56e-10
                       10        20        30        40
               ....*....|....*....|....*....|....*....|....
8URX_m       1 MKRTFQPSVLKRNRSHGFRARMATKNGRQVLARRRAKGRARLTV 44
Cdd:COG0230  1 MKRTYQPSKRKRKRTHGFRARMSTKNGRKVLKRRRAKGRKRLTV 44
 
Name Accession Description Interval E-value
RpmH COG0230
Ribosomal protein L34 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L34 ...
 1-44 1.56e-10

Ribosomal protein L34 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L34 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440000  Cd Length: 44  Bit Score: 49.32  E-value: 1.56e-10
                       10        20        30        40
               ....*....|....*....|....*....|....*....|....
8URX_m       1 MKRTFQPSVLKRNRSHGFRARMATKNGRQVLARRRAKGRARLTV 44
Cdd:COG0230  1 MKRTYQPSKRKRKRTHGFRARMSTKNGRKVLKRRRAKGRKRLTV 44
Ribosomal_L34 pfam00468
Ribosomal protein L34;
2-31 9.43e-09

Ribosomal protein L34;


Pssm-ID: 425699  Cd Length: 42  Bit Score: 44.69  E-value: 9.43e-09
                         10        20        30
                 ....*....|....*....|....*....|
8URX_m         2 KRTFQPSVLKRNRSHGFRARMATKNGRQVL 31
Cdd:pfam00468  1 KRTYQPSNRKRKRKHGFRARMRTKNGRKVL 30
rpmH_bact TIGR01030
ribosomal protein L34, bacterial type; This model describes the bacterial protein L34 and its ...
 1-44 3.36e-07

ribosomal protein L34, bacterial type; This model describes the bacterial protein L34 and its equivalents in organelles. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 130102  Cd Length: 44  Bit Score: 40.96  E-value: 3.36e-07
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
8URX_m         1 MKRTFQPSVLKRNRSHGFRARMATKNGRQVLARRRAKGRARLTV 44
Cdd:TIGR01030  1 MKRTYQPSNLKRKRTHGFRARMATKNGRKVLRRRRAKGRHKLTV 44
 
Name Accession Description Interval E-value
RpmH COG0230
Ribosomal protein L34 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L34 ...
 1-44 1.56e-10

Ribosomal protein L34 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L34 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440000  Cd Length: 44  Bit Score: 49.32  E-value: 1.56e-10
                       10        20        30        40
               ....*....|....*....|....*....|....*....|....
8URX_m       1 MKRTFQPSVLKRNRSHGFRARMATKNGRQVLARRRAKGRARLTV 44
Cdd:COG0230  1 MKRTYQPSKRKRKRTHGFRARMSTKNGRKVLKRRRAKGRKRLTV 44
Ribosomal_L34 pfam00468
Ribosomal protein L34;
2-31 9.43e-09

Ribosomal protein L34;


Pssm-ID: 425699  Cd Length: 42  Bit Score: 44.69  E-value: 9.43e-09
                         10        20        30
                 ....*....|....*....|....*....|
8URX_m         2 KRTFQPSVLKRNRSHGFRARMATKNGRQVL 31
Cdd:pfam00468  1 KRTYQPSNRKRKRKHGFRARMRTKNGRKVL 30
rpmH_bact TIGR01030
ribosomal protein L34, bacterial type; This model describes the bacterial protein L34 and its ...
 1-44 3.36e-07

ribosomal protein L34, bacterial type; This model describes the bacterial protein L34 and its equivalents in organelles. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 130102  Cd Length: 44  Bit Score: 40.96  E-value: 3.36e-07
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
8URX_m         1 MKRTFQPSVLKRNRSHGFRARMATKNGRQVLARRRAKGRARLTV 44
Cdd:TIGR01030  1 MKRTYQPSNLKRKRTHGFRARMATKNGRKVLRRRRAKGRHKLTV 44
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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