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Conserved domains on  [gi|1160578109|sp|A0A0U1RRE5|]
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RecName: Full=Negative regulator of P-body association; AltName: Full=P-body dissociating protein; AltName: Full=Protein NoBody

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
NoBody cd20243
Negative regulator of P-body association; Negative regulator of P-body association, also ...
1-68 3.10e-27

Negative regulator of P-body association; Negative regulator of P-body association, also called P-body dissociating protein or protein NoBody (non-annotated P-body dissociating polypeptide), is a microprotein that interacts with mRNA decapping proteins, which remove the 5' cap from mRNAs to promote 5'-to-3' decay. It localizes to P-bodies, which are mRNA-decay-associated RNA-protein granules. NoBody promotes dispersal of P-body components and is likely to play a role in the mRNA decapping process. Decapping proteins participate in mRNA turnover and nonsense-mediated decay (NMD).


:

Pssm-ID: 380781  Cd Length: 68  Bit Score: 93.04  E-value: 3.10e-27
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1160578109  1 MGDQPCASGRSTLPPGNAREAKPPKKRCLLAPRWDYPEGTPNGGSTTLPSAPPPASAGLKSHPPPPEK 68
Cdd:cd20243    1 MGDQPCASGRSTLPPGNTRETKPPKKRCLLAPRWDYPEGTPNGGSTPLPSAPPPASPGLKSHPPPPEK 68
 
Name Accession Description Interval E-value
NoBody cd20243
Negative regulator of P-body association; Negative regulator of P-body association, also ...
1-68 3.10e-27

Negative regulator of P-body association; Negative regulator of P-body association, also called P-body dissociating protein or protein NoBody (non-annotated P-body dissociating polypeptide), is a microprotein that interacts with mRNA decapping proteins, which remove the 5' cap from mRNAs to promote 5'-to-3' decay. It localizes to P-bodies, which are mRNA-decay-associated RNA-protein granules. NoBody promotes dispersal of P-body components and is likely to play a role in the mRNA decapping process. Decapping proteins participate in mRNA turnover and nonsense-mediated decay (NMD).


Pssm-ID: 380781  Cd Length: 68  Bit Score: 93.04  E-value: 3.10e-27
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1160578109  1 MGDQPCASGRSTLPPGNAREAKPPKKRCLLAPRWDYPEGTPNGGSTTLPSAPPPASAGLKSHPPPPEK 68
Cdd:cd20243    1 MGDQPCASGRSTLPPGNTRETKPPKKRCLLAPRWDYPEGTPNGGSTPLPSAPPPASPGLKSHPPPPEK 68
 
Name Accession Description Interval E-value
NoBody cd20243
Negative regulator of P-body association; Negative regulator of P-body association, also ...
1-68 3.10e-27

Negative regulator of P-body association; Negative regulator of P-body association, also called P-body dissociating protein or protein NoBody (non-annotated P-body dissociating polypeptide), is a microprotein that interacts with mRNA decapping proteins, which remove the 5' cap from mRNAs to promote 5'-to-3' decay. It localizes to P-bodies, which are mRNA-decay-associated RNA-protein granules. NoBody promotes dispersal of P-body components and is likely to play a role in the mRNA decapping process. Decapping proteins participate in mRNA turnover and nonsense-mediated decay (NMD).


Pssm-ID: 380781  Cd Length: 68  Bit Score: 93.04  E-value: 3.10e-27
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1160578109  1 MGDQPCASGRSTLPPGNAREAKPPKKRCLLAPRWDYPEGTPNGGSTTLPSAPPPASAGLKSHPPPPEK 68
Cdd:cd20243    1 MGDQPCASGRSTLPPGNTRETKPPKKRCLLAPRWDYPEGTPNGGSTPLPSAPPPASPGLKSHPPPPEK 68
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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