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Conserved domains on  [gi|226733076|sp|A5FHA4|]
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RecName: Full=CTP synthase; AltName: Full=Cytidine 5'-triphosphate synthase; AltName: Full=Cytidine triphosphate synthetase; Short=CTP synthetase; Short=CTPS; AltName: Full=UTP--ammonia ligase

Protein Classification

CTP synthase( domain architecture ID 11423441)

cytidine triphosphate (CTP) synthase catalyzes the conversion of UTP to CTP in the last committed step in pyrimidine nucleotide biosynthesis

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PyrG COG0504
CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]; CTP synthase ...
4-537 0e+00

CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]; CTP synthase (UTP-ammonia lyase) is part of the Pathway/BioSystem: Pyrimidine biosynthesis


:

Pssm-ID: 440270 [Multi-domain]  Cd Length: 535  Bit Score: 1090.05  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226733076   4 TKYIFVTGGVTSSLGKGIIAASLAKLLQGRGYRTTIQKFDPYINVDPGTLNPYEHGECYVTDDGAETDLDLGHYERFLNV 83
Cdd:COG0504    1 TKYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTIQKLDPYINVDPGTMSPYQHGEVFVTDDGAETDLDLGHYERFLDI 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226733076  84 PTSQANNVTTGRVYLSVIEKERRGEFLGKTVQVVPHITNEIKDRMQLLGKSGDYDIVITEIGGTVGDIESLPYIESVRQL 163
Cdd:COG0504   81 NLSKANNVTTGQIYSSVIEKERRGDYLGKTVQVIPHITDEIKRRIRRAAEESGADVVIVEIGGTVGDIESLPFLEAIRQL 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226733076 164 VWELGENNGIVIHLTLVPYLAAAGELKTKPTQHSVKTLMESGIKADILVCRTEHELSQELRQKLALFCNVKKEAVIQSID 243
Cdd:COG0504  161 RLELGRENVLFIHVTLVPYIAAAGELKTKPTQHSVKELRSIGIQPDILVCRSERPLPEEIKRKIALFCNVPEEAVISAPD 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226733076 244 ASTIYEVPNLMLEEGLDVVALKKLDLPKKAsPDLKNWNTFLKRLKSPKQTVNIGLVGKYVEMQDCYKSILEAFIHAGAAN 323
Cdd:COG0504  241 VDSIYEVPLMLHEQGLDEIVLKKLGLEARE-PDLSEWEELVERIKNPKKEVTIALVGKYVELPDAYKSVVEALKHAGIAN 319
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226733076 324 ETKVNVISIHSEHINADNVEEKLGTLDGVLVAPGFGERGIEGKIEAVRYVRENNIPFFGICLGMQMSVIEYSRNILGYAD 403
Cdd:COG0504  320 GVKVNIKWIDSEDLEEENAEELLKGVDGILVPGGFGERGIEGKIAAIRYARENKIPFLGICLGMQLAVIEFARNVLGLED 399
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226733076 404 ANSTEMNEKTPHPVVNLMEEQKNITDKGGTMRLGAWKCDIKPNTLAHRIYGEKTISERHRHRYEYNNKYADELQKAGLKA 483
Cdd:COG0504  400 ANSTEFDPNTPHPVIDLMPEQKDVSDLGGTMRLGAYPCKLKPGTLAAEAYGKEEISERHRHRYEFNNEYREQLEKAGLVF 479
                        490       500       510       520       530
                 ....*....|....*....|....*....|....*....|....*....|....
gi 226733076 484 SGVNPDTGLVEIVELENHPFFIGVQYHPEYKSTVANPHPIFVNFVAAAVNAHKK 537
Cdd:COG0504  480 SGTSPDGRLVEIVELPDHPWFVGVQFHPEFKSRPNRPHPLFRGFVKAALEYKKK 533
 
Name Accession Description Interval E-value
PyrG COG0504
CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]; CTP synthase ...
4-537 0e+00

CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]; CTP synthase (UTP-ammonia lyase) is part of the Pathway/BioSystem: Pyrimidine biosynthesis


Pssm-ID: 440270 [Multi-domain]  Cd Length: 535  Bit Score: 1090.05  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226733076   4 TKYIFVTGGVTSSLGKGIIAASLAKLLQGRGYRTTIQKFDPYINVDPGTLNPYEHGECYVTDDGAETDLDLGHYERFLNV 83
Cdd:COG0504    1 TKYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTIQKLDPYINVDPGTMSPYQHGEVFVTDDGAETDLDLGHYERFLDI 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226733076  84 PTSQANNVTTGRVYLSVIEKERRGEFLGKTVQVVPHITNEIKDRMQLLGKSGDYDIVITEIGGTVGDIESLPYIESVRQL 163
Cdd:COG0504   81 NLSKANNVTTGQIYSSVIEKERRGDYLGKTVQVIPHITDEIKRRIRRAAEESGADVVIVEIGGTVGDIESLPFLEAIRQL 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226733076 164 VWELGENNGIVIHLTLVPYLAAAGELKTKPTQHSVKTLMESGIKADILVCRTEHELSQELRQKLALFCNVKKEAVIQSID 243
Cdd:COG0504  161 RLELGRENVLFIHVTLVPYIAAAGELKTKPTQHSVKELRSIGIQPDILVCRSERPLPEEIKRKIALFCNVPEEAVISAPD 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226733076 244 ASTIYEVPNLMLEEGLDVVALKKLDLPKKAsPDLKNWNTFLKRLKSPKQTVNIGLVGKYVEMQDCYKSILEAFIHAGAAN 323
Cdd:COG0504  241 VDSIYEVPLMLHEQGLDEIVLKKLGLEARE-PDLSEWEELVERIKNPKKEVTIALVGKYVELPDAYKSVVEALKHAGIAN 319
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226733076 324 ETKVNVISIHSEHINADNVEEKLGTLDGVLVAPGFGERGIEGKIEAVRYVRENNIPFFGICLGMQMSVIEYSRNILGYAD 403
Cdd:COG0504  320 GVKVNIKWIDSEDLEEENAEELLKGVDGILVPGGFGERGIEGKIAAIRYARENKIPFLGICLGMQLAVIEFARNVLGLED 399
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226733076 404 ANSTEMNEKTPHPVVNLMEEQKNITDKGGTMRLGAWKCDIKPNTLAHRIYGEKTISERHRHRYEYNNKYADELQKAGLKA 483
Cdd:COG0504  400 ANSTEFDPNTPHPVIDLMPEQKDVSDLGGTMRLGAYPCKLKPGTLAAEAYGKEEISERHRHRYEFNNEYREQLEKAGLVF 479
                        490       500       510       520       530
                 ....*....|....*....|....*....|....*....|....*....|....
gi 226733076 484 SGVNPDTGLVEIVELENHPFFIGVQYHPEYKSTVANPHPIFVNFVAAAVNAHKK 537
Cdd:COG0504  480 SGTSPDGRLVEIVELPDHPWFVGVQFHPEFKSRPNRPHPLFRGFVKAALEYKKK 533
pyrG PRK05380
CTP synthetase; Validated
3-537 0e+00

CTP synthetase; Validated


Pssm-ID: 235437 [Multi-domain]  Cd Length: 533  Bit Score: 1056.16  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226733076   3 QTKYIFVTGGVTSSLGKGIIAASLAKLLQGRGYRTTIQKFDPYINVDPGTLNPYEHGECYVTDDGAETDLDLGHYERFLN 82
Cdd:PRK05380   1 MTKYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTIQKLDPYINVDPGTMSPYQHGEVFVTDDGAETDLDLGHYERFID 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226733076  83 VPTSQANNVTTGRVYLSVIEKERRGEFLGKTVQVVPHITNEIKDRMQLLGKsgDYDIVITEIGGTVGDIESLPYIESVRQ 162
Cdd:PRK05380  81 TNLTKYNNVTTGKIYSSVIEKERRGDYLGKTVQVIPHITDEIKERILAAGT--DADVVIVEIGGTVGDIESLPFLEAIRQ 158
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226733076 163 LVWELGENNGIVIHLTLVPYLAAAGELKTKPTQHSVKTLMESGIKADILVCRTEHELSQELRQKLALFCNVKKEAVIQSI 242
Cdd:PRK05380 159 LRLELGRENVLFIHLTLVPYIAAAGELKTKPTQHSVKELRSIGIQPDILVCRSERPLPEEEKRKIALFCNVPEEAVISAP 238
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226733076 243 DASTIYEVPNLMLEEGLDVVALKKLDLPKKAsPDLKNWNTFLKRLKSPKQTVNIGLVGKYVEMQDCYKSILEAFIHAGAA 322
Cdd:PRK05380 239 DVDSIYEVPLLLHEQGLDDIVLERLGLEAPE-PDLSEWEELVERLKNPKGEVTIALVGKYVELPDAYKSVIEALKHAGIA 317
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226733076 323 NETKVNVISIHSEHINADNVEEKLGTLDGVLVAPGFGERGIEGKIEAVRYVRENNIPFFGICLGMQMSVIEYSRNILGYA 402
Cdd:PRK05380 318 NDVKVNIKWIDSEDLEEENVAELLKGVDGILVPGGFGERGIEGKILAIRYARENNIPFLGICLGMQLAVIEFARNVLGLE 397
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226733076 403 DANSTEMNEKTPHPVVNLMEEQKNITDKGGTMRLGAWKCDIKPNTLAHRIYGEKTISERHRHRYEYNNKYADELQKAGLK 482
Cdd:PRK05380 398 DANSTEFDPDTPHPVIDLMPEQKDVSDLGGTMRLGAYPCKLKPGTLAAEIYGKEEIYERHRHRYEVNNKYREQLEKAGLV 477
                        490       500       510       520       530
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 226733076 483 ASGVNPDTGLVEIVELENHPFFIGVQYHPEYKSTVANPHPIFVNFVAAAVNAHKK 537
Cdd:PRK05380 478 FSGTSPDGRLVEIVELPDHPWFVGVQFHPEFKSRPRRPHPLFAGFVKAALENKKR 532
PyrG TIGR00337
CTP synthase; CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. ...
4-530 0e+00

CTP synthase; CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7). [Purines, pyrimidines, nucleosides, and nucleotides, Pyrimidine ribonucleotide biosynthesis]


Pssm-ID: 273021 [Multi-domain]  Cd Length: 525  Bit Score: 823.89  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226733076    4 TKYIFVTGGVTSSLGKGIIAASLAKLLQGRGYRTTIQKFDPYINVDPGTLNPYEHGECYVTDDGAETDLDLGHYERFLNV 83
Cdd:TIGR00337   1 MKYIFVTGGVVSSLGKGITAASLGRLLKARGLNVTIIKIDPYINIDPGTMSPLQHGEVFVTDDGAETDLDLGHYERFLDT 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226733076   84 PTSQANNVTTGRVYLSVIEKERRGEFLGKTVQVVPHITNEIKDRMQLLGKSGDYDIVITEIGGTVGDIESLPYIESVRQL 163
Cdd:TIGR00337  81 NLTRDNNITTGKIYSSVIEKERKGDYLGKTVQIIPHITNEIKDRILRVAKISGPDVVIVEIGGTVGDIESLPFLEAIRQF 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226733076  164 VWELGENNGIVIHLTLVPYLAAAGELKTKPTQHSVKTLMESGIKADILVCRTEHELSQELRQKLALFCNVKKEAVIQSID 243
Cdd:TIGR00337 161 RVEVGRENVLFIHVTLVPYIAAAGEQKTKPTQHSVKELRSLGIQPDIIICRSSRPLDPNTKDKIALFCDVEEEAVISAKD 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226733076  244 ASTIYEVPNLMLEEGLDVVALKKLDLPKKaSPDLKNWNTFLKRLKSPKQTVNIGLVGKYVEMQDCYKSILEAFIHAGAAN 323
Cdd:TIGR00337 241 VSSIYEVPLLLLKQGLDDYLCRRLNLNCD-EADLSEWEQLVEKFANPKHEVTIGIVGKYVELKDAYLSVIEALKHAGAKL 319
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226733076  324 ETKVNVISIHSEHINADNVEEkLGTLDGVLVAPGFGERGIEGKIEAVRYVRENNIPFFGICLGMQMSVIEYSRNILGYAD 403
Cdd:TIGR00337 320 DTKVNIKWIDSEDLEEEGVEF-LKGLDGILVPGGFGERGVEGKILAIKYARENNIPFLGICLGMQLAVIEFARNVAGLEG 398
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226733076  404 ANSTEMNEKTPHPVVNLMEEQKNITDKGGTMRLGAWKCDIKPNTLAHRIYGEKTISERHRHRYEYNNKYADELQKAGLKA 483
Cdd:TIGR00337 399 ANSTEFDPDTKYPVVDLLPEQKDISDLGGTMRLGLYPCILKPGTLAFKLYGKEEVYERHRHRYEVNNEYREQIENKGLIV 478
                         490       500       510       520
                  ....*....|....*....|....*....|....*....|....*..
gi 226733076  484 SGVNPDTGLVEIVELENHPFFIGVQYHPEYKSTVANPHPIFVNFVAA 530
Cdd:TIGR00337 479 SGTSPDGRLVEIIELPDHPFFVACQFHPEFTSRPNDPHPLFLGFVKA 525
CTP_synth_N pfam06418
CTP synthase N-terminus; This family consists of the N-terminal region of the CTP synthase ...
5-269 0e+00

CTP synthase N-terminus; This family consists of the N-terminal region of the CTP synthase protein (EC:6.3.4.2). This family is found in conjunction with pfam00117 located in the C-terminal region of the protein. CTP synthase catalyzes the synthesis of CTP from UTP by amination of the pyrimidine ring at the 4-position.


Pssm-ID: 461903  Cd Length: 265  Bit Score: 540.01  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226733076    5 KYIFVTGGVTSSLGKGIIAASLAKLLQGRGYRTTIQKFDPYINVDPGTLNPYEHGECYVTDDGAETDLDLGHYERFLNVP 84
Cdd:pfam06418   1 KYIFVTGGVVSGLGKGITAASLGRLLKSRGLKVTIIKIDPYLNVDPGTMSPYQHGEVFVTDDGAETDLDLGHYERFLDIN 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226733076   85 TSQANNVTTGRVYLSVIEKERRGEFLGKTVQVVPHITNEIKDRMQLLGKSGDYDIVITEIGGTVGDIESLPYIESVRQLV 164
Cdd:pfam06418  81 LTKDNNITTGKIYQSVIEKERRGDYLGKTVQVIPHITDEIKERIRRVAKEVGPDVVIVEIGGTVGDIESLPFLEAIRQLR 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226733076  165 WELGENNGIVIHLTLVPYLAAAGELKTKPTQHSVKTLMESGIKADILVCRTEHELSQELRQKLALFCNVKKEAVIQSIDA 244
Cdd:pfam06418 161 LEVGRENVLFIHVTLVPYLKAAGELKTKPTQHSVKELRSIGIQPDIIVCRSERPLDEEVKEKIALFCNVPKEAVISAPDV 240
                         250       260
                  ....*....|....*....|....*
gi 226733076  245 STIYEVPNLMLEEGLDVVALKKLDL 269
Cdd:pfam06418 241 SSIYEVPLLLEEQGLDDIILKRLNL 265
CTPS_N cd03113
N-terminal domain of cytidine 5'-triphosphate synthase; Cytidine 5'-triphosphate synthase ...
5-260 5.52e-168

N-terminal domain of cytidine 5'-triphosphate synthase; Cytidine 5'-triphosphate synthase (CTPS) is a two-domain protein, which consists of an N-terminal synthetase domain and C-terminal glutaminase domain. The enzymes hydrolyze the amide bond of glutamine to ammonia and glutamate at the glutaminase domains and transfer nascent ammonia to the acceptor substrate at the synthetase domain to form an aminated product.


Pssm-ID: 349767  Cd Length: 261  Bit Score: 475.82  E-value: 5.52e-168
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226733076   5 KYIFVTGGVTSSLGKGIIAASLAKLLQGRGYRTTIQKFDPYINVDPGTLNPYEHGECYVTDDGAETDLDLGHYERFLNVP 84
Cdd:cd03113    1 KYIFVTGGVVSGLGKGITASSIGRLLKSRGLRVTAIKIDPYLNVDAGTMSPYEHGEVFVLDDGGETDLDLGNYERFLDVN 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226733076  85 TSQANNVTTGRVYLSVIEKERRGEFLGKTVQVVPHITNEIKDRMQLLGKSGDYDIVITEIGGTVGDIESLPYIESVRQLV 164
Cdd:cd03113   81 LTRDNNITTGKIYSEVIEKERRGDYLGKTVQVIPHITDEIKERIRRVAKIPEPDVCIVEIGGTVGDIESLPFLEALRQFQ 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226733076 165 WELGENNGIVIHLTLVPYLAAAGELKTKPTQHSVKTLMESGIKADILVCRTEHELSQELRQKLALFCNVKKEAVIQSIDA 244
Cdd:cd03113  161 FEVGRENFLFIHVTLVPYLEATGEQKTKPTQHSVKELRSLGIQPDIIVCRSEKPLDEETKEKIALFCNVPPEAVISVHDV 240
                        250
                 ....*....|....*.
gi 226733076 245 STIYEVPNLMLEEGLD 260
Cdd:cd03113  241 SSIYEVPLLLEKQGLD 256
 
Name Accession Description Interval E-value
PyrG COG0504
CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]; CTP synthase ...
4-537 0e+00

CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]; CTP synthase (UTP-ammonia lyase) is part of the Pathway/BioSystem: Pyrimidine biosynthesis


Pssm-ID: 440270 [Multi-domain]  Cd Length: 535  Bit Score: 1090.05  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226733076   4 TKYIFVTGGVTSSLGKGIIAASLAKLLQGRGYRTTIQKFDPYINVDPGTLNPYEHGECYVTDDGAETDLDLGHYERFLNV 83
Cdd:COG0504    1 TKYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTIQKLDPYINVDPGTMSPYQHGEVFVTDDGAETDLDLGHYERFLDI 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226733076  84 PTSQANNVTTGRVYLSVIEKERRGEFLGKTVQVVPHITNEIKDRMQLLGKSGDYDIVITEIGGTVGDIESLPYIESVRQL 163
Cdd:COG0504   81 NLSKANNVTTGQIYSSVIEKERRGDYLGKTVQVIPHITDEIKRRIRRAAEESGADVVIVEIGGTVGDIESLPFLEAIRQL 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226733076 164 VWELGENNGIVIHLTLVPYLAAAGELKTKPTQHSVKTLMESGIKADILVCRTEHELSQELRQKLALFCNVKKEAVIQSID 243
Cdd:COG0504  161 RLELGRENVLFIHVTLVPYIAAAGELKTKPTQHSVKELRSIGIQPDILVCRSERPLPEEIKRKIALFCNVPEEAVISAPD 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226733076 244 ASTIYEVPNLMLEEGLDVVALKKLDLPKKAsPDLKNWNTFLKRLKSPKQTVNIGLVGKYVEMQDCYKSILEAFIHAGAAN 323
Cdd:COG0504  241 VDSIYEVPLMLHEQGLDEIVLKKLGLEARE-PDLSEWEELVERIKNPKKEVTIALVGKYVELPDAYKSVVEALKHAGIAN 319
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226733076 324 ETKVNVISIHSEHINADNVEEKLGTLDGVLVAPGFGERGIEGKIEAVRYVRENNIPFFGICLGMQMSVIEYSRNILGYAD 403
Cdd:COG0504  320 GVKVNIKWIDSEDLEEENAEELLKGVDGILVPGGFGERGIEGKIAAIRYARENKIPFLGICLGMQLAVIEFARNVLGLED 399
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226733076 404 ANSTEMNEKTPHPVVNLMEEQKNITDKGGTMRLGAWKCDIKPNTLAHRIYGEKTISERHRHRYEYNNKYADELQKAGLKA 483
Cdd:COG0504  400 ANSTEFDPNTPHPVIDLMPEQKDVSDLGGTMRLGAYPCKLKPGTLAAEAYGKEEISERHRHRYEFNNEYREQLEKAGLVF 479
                        490       500       510       520       530
                 ....*....|....*....|....*....|....*....|....*....|....
gi 226733076 484 SGVNPDTGLVEIVELENHPFFIGVQYHPEYKSTVANPHPIFVNFVAAAVNAHKK 537
Cdd:COG0504  480 SGTSPDGRLVEIVELPDHPWFVGVQFHPEFKSRPNRPHPLFRGFVKAALEYKKK 533
pyrG PRK05380
CTP synthetase; Validated
3-537 0e+00

CTP synthetase; Validated


Pssm-ID: 235437 [Multi-domain]  Cd Length: 533  Bit Score: 1056.16  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226733076   3 QTKYIFVTGGVTSSLGKGIIAASLAKLLQGRGYRTTIQKFDPYINVDPGTLNPYEHGECYVTDDGAETDLDLGHYERFLN 82
Cdd:PRK05380   1 MTKYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTIQKLDPYINVDPGTMSPYQHGEVFVTDDGAETDLDLGHYERFID 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226733076  83 VPTSQANNVTTGRVYLSVIEKERRGEFLGKTVQVVPHITNEIKDRMQLLGKsgDYDIVITEIGGTVGDIESLPYIESVRQ 162
Cdd:PRK05380  81 TNLTKYNNVTTGKIYSSVIEKERRGDYLGKTVQVIPHITDEIKERILAAGT--DADVVIVEIGGTVGDIESLPFLEAIRQ 158
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226733076 163 LVWELGENNGIVIHLTLVPYLAAAGELKTKPTQHSVKTLMESGIKADILVCRTEHELSQELRQKLALFCNVKKEAVIQSI 242
Cdd:PRK05380 159 LRLELGRENVLFIHLTLVPYIAAAGELKTKPTQHSVKELRSIGIQPDILVCRSERPLPEEEKRKIALFCNVPEEAVISAP 238
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226733076 243 DASTIYEVPNLMLEEGLDVVALKKLDLPKKAsPDLKNWNTFLKRLKSPKQTVNIGLVGKYVEMQDCYKSILEAFIHAGAA 322
Cdd:PRK05380 239 DVDSIYEVPLLLHEQGLDDIVLERLGLEAPE-PDLSEWEELVERLKNPKGEVTIALVGKYVELPDAYKSVIEALKHAGIA 317
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226733076 323 NETKVNVISIHSEHINADNVEEKLGTLDGVLVAPGFGERGIEGKIEAVRYVRENNIPFFGICLGMQMSVIEYSRNILGYA 402
Cdd:PRK05380 318 NDVKVNIKWIDSEDLEEENVAELLKGVDGILVPGGFGERGIEGKILAIRYARENNIPFLGICLGMQLAVIEFARNVLGLE 397
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226733076 403 DANSTEMNEKTPHPVVNLMEEQKNITDKGGTMRLGAWKCDIKPNTLAHRIYGEKTISERHRHRYEYNNKYADELQKAGLK 482
Cdd:PRK05380 398 DANSTEFDPDTPHPVIDLMPEQKDVSDLGGTMRLGAYPCKLKPGTLAAEIYGKEEIYERHRHRYEVNNKYREQLEKAGLV 477
                        490       500       510       520       530
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 226733076 483 ASGVNPDTGLVEIVELENHPFFIGVQYHPEYKSTVANPHPIFVNFVAAAVNAHKK 537
Cdd:PRK05380 478 FSGTSPDGRLVEIVELPDHPWFVGVQFHPEFKSRPRRPHPLFAGFVKAALENKKR 532
PyrG TIGR00337
CTP synthase; CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. ...
4-530 0e+00

CTP synthase; CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7). [Purines, pyrimidines, nucleosides, and nucleotides, Pyrimidine ribonucleotide biosynthesis]


Pssm-ID: 273021 [Multi-domain]  Cd Length: 525  Bit Score: 823.89  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226733076    4 TKYIFVTGGVTSSLGKGIIAASLAKLLQGRGYRTTIQKFDPYINVDPGTLNPYEHGECYVTDDGAETDLDLGHYERFLNV 83
Cdd:TIGR00337   1 MKYIFVTGGVVSSLGKGITAASLGRLLKARGLNVTIIKIDPYINIDPGTMSPLQHGEVFVTDDGAETDLDLGHYERFLDT 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226733076   84 PTSQANNVTTGRVYLSVIEKERRGEFLGKTVQVVPHITNEIKDRMQLLGKSGDYDIVITEIGGTVGDIESLPYIESVRQL 163
Cdd:TIGR00337  81 NLTRDNNITTGKIYSSVIEKERKGDYLGKTVQIIPHITNEIKDRILRVAKISGPDVVIVEIGGTVGDIESLPFLEAIRQF 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226733076  164 VWELGENNGIVIHLTLVPYLAAAGELKTKPTQHSVKTLMESGIKADILVCRTEHELSQELRQKLALFCNVKKEAVIQSID 243
Cdd:TIGR00337 161 RVEVGRENVLFIHVTLVPYIAAAGEQKTKPTQHSVKELRSLGIQPDIIICRSSRPLDPNTKDKIALFCDVEEEAVISAKD 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226733076  244 ASTIYEVPNLMLEEGLDVVALKKLDLPKKaSPDLKNWNTFLKRLKSPKQTVNIGLVGKYVEMQDCYKSILEAFIHAGAAN 323
Cdd:TIGR00337 241 VSSIYEVPLLLLKQGLDDYLCRRLNLNCD-EADLSEWEQLVEKFANPKHEVTIGIVGKYVELKDAYLSVIEALKHAGAKL 319
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226733076  324 ETKVNVISIHSEHINADNVEEkLGTLDGVLVAPGFGERGIEGKIEAVRYVRENNIPFFGICLGMQMSVIEYSRNILGYAD 403
Cdd:TIGR00337 320 DTKVNIKWIDSEDLEEEGVEF-LKGLDGILVPGGFGERGVEGKILAIKYARENNIPFLGICLGMQLAVIEFARNVAGLEG 398
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226733076  404 ANSTEMNEKTPHPVVNLMEEQKNITDKGGTMRLGAWKCDIKPNTLAHRIYGEKTISERHRHRYEYNNKYADELQKAGLKA 483
Cdd:TIGR00337 399 ANSTEFDPDTKYPVVDLLPEQKDISDLGGTMRLGLYPCILKPGTLAFKLYGKEEVYERHRHRYEVNNEYREQIENKGLIV 478
                         490       500       510       520
                  ....*....|....*....|....*....|....*....|....*..
gi 226733076  484 SGVNPDTGLVEIVELENHPFFIGVQYHPEYKSTVANPHPIFVNFVAA 530
Cdd:TIGR00337 479 SGTSPDGRLVEIIELPDHPFFVACQFHPEFTSRPNDPHPLFLGFVKA 525
PLN02327 PLN02327
CTP synthase
4-531 0e+00

CTP synthase


Pssm-ID: 215186 [Multi-domain]  Cd Length: 557  Bit Score: 643.62  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226733076   4 TKYIFVTGGVTSSLGKGIIAASLAKLLQGRGYRTTIQKFDPYINVDPGTLNPYEHGECYVTDDGAETDLDLGHYERFLNV 83
Cdd:PLN02327   1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTSIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFLDV 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226733076  84 PTSQANNVTTGRVYLSVIEKERRGEFLGKTVQVVPHITNEIKDRMQLL------GKSGDYDIVITEIGGTVGDIESLPYI 157
Cdd:PLN02327  81 TLTRDNNITTGKIYQSVIEKERRGDYLGKTVQVVPHITDAIQEWIERVakipvdGKEGPADVCVIELGGTVGDIESMPFI 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226733076 158 ESVRQLVWELGENNGIVIHLTLVPYLAAAGELKTKPTQHSVKTLMESGIKADILVCRTEHELSQELRQKLALFCNVKKEA 237
Cdd:PLN02327 161 EALRQFSFRVGPGNFCLIHVSLVPVLGVVGEQKTKPTQHSVRGLRALGLTPHILACRSTKPLEENVKEKLSQFCHVPAEN 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226733076 238 VIQSIDASTIYEVPNLMLEEGLDVVALKKLDLPKKAS-PDLKNWNTFLKRLKSPKQTVNIGLVGKYVEMQDCYKSILEAF 316
Cdd:PLN02327 241 ILNLHDVSNIWHVPLLLRDQKAHEAILKVLNLLSVARePDLEEWTARAESCDNLTEPVRIAMVGKYTGLSDSYLSVLKAL 320
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226733076 317 IHAGAANETKVNVISIHSEHINADNVEE----------KLGTLDGVLVAPGFGERGIEGKIEAVRYVRENNIPFFGICLG 386
Cdd:PLN02327 321 LHASVACSRKLVIDWVAASDLEDETAKEtpdayaaawkLLKGADGILVPGGFGDRGVEGKILAAKYARENKVPYLGICLG 400
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226733076 387 MQMSVIEYSRNILGYADANSTEMNEKTPHPVVNLMEEQKNiTDKGGTMRLGAWKCDIK-PNTLAHRIYG-EKTISERHRH 464
Cdd:PLN02327 401 MQIAVIEFARSVLGLKDANSTEFDPETPNPCVIFMPEGSK-THMGGTMRLGSRRTYFQtPDCKSAKLYGnVSFVDERHRH 479
                        490       500       510       520       530       540
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 226733076 465 RYEYNNKYADELQKAGLKASGVNpDTGL-VEIVELENHPFFIGVQYHPEYKSTVANPHPIFVNFVAAA 531
Cdd:PLN02327 480 RYEVNPEMVPRLEKAGLSFVGKD-ETGRrMEIVELPSHPFFVGVQFHPEFKSRPGKPSPLFLGLIAAA 546
CTP_synth_N pfam06418
CTP synthase N-terminus; This family consists of the N-terminal region of the CTP synthase ...
5-269 0e+00

CTP synthase N-terminus; This family consists of the N-terminal region of the CTP synthase protein (EC:6.3.4.2). This family is found in conjunction with pfam00117 located in the C-terminal region of the protein. CTP synthase catalyzes the synthesis of CTP from UTP by amination of the pyrimidine ring at the 4-position.


Pssm-ID: 461903  Cd Length: 265  Bit Score: 540.01  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226733076    5 KYIFVTGGVTSSLGKGIIAASLAKLLQGRGYRTTIQKFDPYINVDPGTLNPYEHGECYVTDDGAETDLDLGHYERFLNVP 84
Cdd:pfam06418   1 KYIFVTGGVVSGLGKGITAASLGRLLKSRGLKVTIIKIDPYLNVDPGTMSPYQHGEVFVTDDGAETDLDLGHYERFLDIN 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226733076   85 TSQANNVTTGRVYLSVIEKERRGEFLGKTVQVVPHITNEIKDRMQLLGKSGDYDIVITEIGGTVGDIESLPYIESVRQLV 164
Cdd:pfam06418  81 LTKDNNITTGKIYQSVIEKERRGDYLGKTVQVIPHITDEIKERIRRVAKEVGPDVVIVEIGGTVGDIESLPFLEAIRQLR 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226733076  165 WELGENNGIVIHLTLVPYLAAAGELKTKPTQHSVKTLMESGIKADILVCRTEHELSQELRQKLALFCNVKKEAVIQSIDA 244
Cdd:pfam06418 161 LEVGRENVLFIHVTLVPYLKAAGELKTKPTQHSVKELRSIGIQPDIIVCRSERPLDEEVKEKIALFCNVPKEAVISAPDV 240
                         250       260
                  ....*....|....*....|....*
gi 226733076  245 STIYEVPNLMLEEGLDVVALKKLDL 269
Cdd:pfam06418 241 SSIYEVPLLLEEQGLDDIILKRLNL 265
CTPS_N cd03113
N-terminal domain of cytidine 5'-triphosphate synthase; Cytidine 5'-triphosphate synthase ...
5-260 5.52e-168

N-terminal domain of cytidine 5'-triphosphate synthase; Cytidine 5'-triphosphate synthase (CTPS) is a two-domain protein, which consists of an N-terminal synthetase domain and C-terminal glutaminase domain. The enzymes hydrolyze the amide bond of glutamine to ammonia and glutamate at the glutaminase domains and transfer nascent ammonia to the acceptor substrate at the synthetase domain to form an aminated product.


Pssm-ID: 349767  Cd Length: 261  Bit Score: 475.82  E-value: 5.52e-168
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226733076   5 KYIFVTGGVTSSLGKGIIAASLAKLLQGRGYRTTIQKFDPYINVDPGTLNPYEHGECYVTDDGAETDLDLGHYERFLNVP 84
Cdd:cd03113    1 KYIFVTGGVVSGLGKGITASSIGRLLKSRGLRVTAIKIDPYLNVDAGTMSPYEHGEVFVLDDGGETDLDLGNYERFLDVN 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226733076  85 TSQANNVTTGRVYLSVIEKERRGEFLGKTVQVVPHITNEIKDRMQLLGKSGDYDIVITEIGGTVGDIESLPYIESVRQLV 164
Cdd:cd03113   81 LTRDNNITTGKIYSEVIEKERRGDYLGKTVQVIPHITDEIKERIRRVAKIPEPDVCIVEIGGTVGDIESLPFLEALRQFQ 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226733076 165 WELGENNGIVIHLTLVPYLAAAGELKTKPTQHSVKTLMESGIKADILVCRTEHELSQELRQKLALFCNVKKEAVIQSIDA 244
Cdd:cd03113  161 FEVGRENFLFIHVTLVPYLEATGEQKTKPTQHSVKELRSLGIQPDIIVCRSEKPLDEETKEKIALFCNVPPEAVISVHDV 240
                        250
                 ....*....|....*.
gi 226733076 245 STIYEVPNLMLEEGLD 260
Cdd:cd03113  241 SSIYEVPLLLEKQGLD 256
GATase1_CTP_Synthase cd01746
Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase; ...
294-528 1.28e-141

Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase; Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.


Pssm-ID: 153217 [Multi-domain]  Cd Length: 235  Bit Score: 407.71  E-value: 1.28e-141
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226733076 294 VNIGLVGKYVEMQDCYKSILEAFIHAGAANETKVNVISIHSEHINADNVEEKLGTLDGVLVAPGFGERGIEGKIEAVRYV 373
Cdd:cd01746    1 VRIALVGKYVELPDAYLSVLEALKHAGIALGVKLEIKWIDSEDLEEENAEEALKGADGILVPGGFGIRGVEGKILAIKYA 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226733076 374 RENNIPFFGICLGMQMSVIEYSRNILGYADANSTEMNEKTPHPVVNLMEEQKNITDKGGTMRLGAWKCDIKPNTLAHRIY 453
Cdd:cd01746   81 RENNIPFLGICLGMQLAVIEFARNVLGLPDANSTEFDPDTPHPVVDLMPEQKGVKDLGGTMRLGAYPVILKPGTLAHKYY 160
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 226733076 454 GEKTISERHRHRYEYNNKYADELQKAGLKASGVNPDTGLVEIVELENHPFFIGVQYHPEYKSTVANPHPIFVNFV 528
Cdd:cd01746  161 GKDEVEERHRHRYEVNPEYVDELEEAGLRFSGTDPDGGLVEIVELPDHPFFVGTQFHPEFKSRPLKPHPLFVGFV 235
PRK06186 PRK06186
hypothetical protein; Validated
293-532 1.00e-42

hypothetical protein; Validated


Pssm-ID: 180452 [Multi-domain]  Cd Length: 229  Bit Score: 152.04  E-value: 1.00e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226733076 293 TVNIGLVGKYVEMQDCYKSILEAFIHAGAANETKVNVISIHSEHINAdnvEEKLGTLDGVLVAPGFGERGIEGKIEAVRY 372
Cdd:PRK06186   1 TLRIALVGDYNPDVTAHQAIPLALDLAAAVLGLPVDYEWLPTPEITD---PEDLAGFDGIWCVPGSPYRNDDGALTAIRF 77
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226733076 373 VRENNIPFFGICLGMQMSVIEYSRNILGYADANSTEMNEKTPHPVV-----NLMEEQKNITdkggtmrlgawkcdIKPNT 447
Cdd:PRK06186  78 ARENGIPFLGTCGGFQHALLEYARNVLGWADAAHAETDPEGDRPVIaplscSLVEKTGDIR--------------LRPGS 143
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226733076 448 LAHRIYGEKTISERHRHRYEYNNKYADELQKAGLKASGVNPDtGLVEIVELENHPFFIGVQYHPEYKSTVANPHPIFVNF 527
Cdd:PRK06186 144 LIARAYGTLEIEEGYHCRYGVNPEFVAALESGDLRVTGWDED-GDVRAVELPGHPFFVATLFQPERAALAGRPPPLVRAF 222

                 ....*
gi 226733076 528 VAAAV 532
Cdd:PRK06186 223 LRAAR 227
GATase pfam00117
Glutamine amidotransferase class-I;
307-530 3.42e-38

Glutamine amidotransferase class-I;


Pssm-ID: 395067 [Multi-domain]  Cd Length: 188  Bit Score: 138.52  E-value: 3.42e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226733076  307 DCYKSILEAFIHAGAANETKVNVIsihseHINADNVEEKLGTLDGVLVAPGFGERGI-EGKIEAVRYVRENNIPFFGICL 385
Cdd:pfam00117   4 DNGDSFTYNLARALRELGVEVTVV-----PNDTPAEEILEENPDGIILSGGPGSPGAaGGAIEAIREARELKIPILGICL 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226733076  386 GMQMSVIEYSRNIlgyadanstemnektphpvvnlmEEQKNITDKGGTMRLGAWKCdikpntlaHRIYG-EKTISERHRH 464
Cdd:pfam00117  79 GHQLLALAFGGKV-----------------------VKAKKFGHHGKNSPVGDDGC--------GLFYGlPNVFIVRRYH 127
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 226733076  465 RYEYNNKYAdelqKAGLKASGVNP-DTGLVEIVELENhPFFiGVQYHPEYKSTVANPHPIFVNFVAA 530
Cdd:pfam00117 128 SYAVDPDTL----PDGLEVTATSEnDGTIMGIRHKKL-PIF-GVQFHPESILTPHGPEILFNFFIKA 188
PuuD COG2071
Gamma-glutamyl-gamma-aminobutyrate hydrolase PuuD (putrescine degradation), contains ...
338-531 2.21e-18

Gamma-glutamyl-gamma-aminobutyrate hydrolase PuuD (putrescine degradation), contains GATase1-like domain [Amino acid transport and metabolism];


Pssm-ID: 441674 [Multi-domain]  Cd Length: 231  Bit Score: 84.45  E-value: 2.21e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226733076 338 NADNVEEKLGTLDGVL------VAPG-FGERGIEGK-----------IEAVRYVRENNIPFFGICLGMQMSvieysrNI- 398
Cdd:COG2071   39 DEEDLDELLDRLDGLVltggadVDPAlYGEEPHPELgpidperdafeLALIRAALERGKPVLGICRGMQLL------NVa 112
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226733076 399 LG---YADansteMNEKTPHPVVNLMEEQKNITDKggTMRlgawkcdIKPNTLAHRIYGEKTISERHRHRyeynnkyade 475
Cdd:COG2071  113 LGgtlYQD-----LPDQVPGALDHRQPAPRYAPRH--TVE-------IEPGSRLARILGEEEIRVNSLHH---------- 168
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 226733076 476 lQ--K---AGLKASGVNPDtGLVEIVELENHPFFIGVQYHPEYkSTVANPH--PIFVNFVAAA 531
Cdd:COG2071  169 -QavKrlgPGLRVSARAPD-GVIEAIESPGAPFVLGVQWHPEW-LAASDPLsrRLFEAFVEAA 228
GATase1 cd01653
Type 1 glutamine amidotransferase (GATase1)-like domain; Type 1 glutamine amidotransferase ...
296-392 1.38e-11

Type 1 glutamine amidotransferase (GATase1)-like domain; Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. For Pyrococcus horikoshii PH1704, the Cys of the nucleophile elbow together with a different His and, a Glu from an adjacent monomer form a catalytic triad different from the typical GATase1 triad. The E. coli HP-II C-terminal domain, S. meliloti Rm1021 ThuA and the A4 beta-galactosidase middle domain lack the catalytic triad typical GATaseI domains. GATase1-like domains can occur either as single polypeptides, as in Class I glutamine amidotransferases, or as domains in a much larger multifunctional synthase protein, such as CPSase.


Pssm-ID: 153210 [Multi-domain]  Cd Length: 115  Bit Score: 61.46  E-value: 1.38e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226733076 296 IGLVGKYVEMQDCYKSILEAFIHAGAanetKVNVISIHSEHINADnveEKLGTLDGVLVAPGFG----ERGIEGKIEAVR 371
Cdd:cd01653    1 VAVLLFPGFEELELASPLDALREAGA----EVDVVSPDGGPVESD---VDLDDYDGLILPGGPGtpddLARDEALLALLR 73
                         90       100
                 ....*....|....*....|.
gi 226733076 372 YVRENNIPFFGICLGMQMSVI 392
Cdd:cd01653   74 EAAAAGKPILGICLGAQLLVL 94
Peptidase_C26 pfam07722
Peptidase C26; These peptidases have gamma-glutamyl hydrolase activity; that is they catalyze ...
370-512 3.16e-11

Peptidase C26; These peptidases have gamma-glutamyl hydrolase activity; that is they catalyze the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to pfam00117, but contain extensions in four loops and at the C terminus.


Pssm-ID: 429620 [Multi-domain]  Cd Length: 219  Bit Score: 63.04  E-value: 3.16e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226733076  370 VRYVRENNIPFFGICLGMQ-MSVieysrnILG---YADANSTEMNEKTPHPvvnlmeEQKNITDKGGTMRlgawkcdIKP 445
Cdd:pfam07722  98 IRAALARGKPILGICRGFQlLNV------ALGgtlYQDIQEQPGFTDHREH------CQVAPYAPSHAVN-------VEP 158
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 226733076  446 NTLAHRIYGEKTISERHRHRyeynnKYADELQKaGLKASGVNPDtGLVEIVELENHP-FFIGVQYHPE 512
Cdd:pfam07722 159 GSLLASLLGSEEFRVNSLHH-----QAIDRLAP-GLRVEAVAPD-GTIEAIESPNAKgFALGVQWHPE 219
GAT_1 cd03128
Type 1 glutamine amidotransferase (GATase1)-like domain; Type 1 glutamine amidotransferase ...
296-389 5.02e-11

Type 1 glutamine amidotransferase (GATase1)-like domain; Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase (CPSase), cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. For Pyrococcus horikoshii PH1704, the Cys of the nucleophile elbow together with a different His and, a Glu from an adjacent monomer form a catalytic triad different from the typical GATase1 triad. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad of typical GATase1 domains, by having a Ser in place of the reactive Cys at the nucleophile elbow. The E. coli HP-II C-terminal domain, S. meliloti Rm1021 ThuA and the A4 beta-galactosidase middle domain lack the catalytic triad typical GATaseI domains. GATase1-like domains can occur either as single polypeptides, as in Class I glutamine amidotransferases, or as domains in a much larger multifunctional synthase protein, such as CPSase. Peptidase E has a circular permutation in the common core of a typical GTAse1 domain.


Pssm-ID: 153222 [Multi-domain]  Cd Length: 92  Bit Score: 59.14  E-value: 5.02e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226733076 296 IGLVGKYVEMQDCYKSILEAFIHAGAanetKVNVISIHSEHINADnveEKLGTLDGVLVAPGFG----ERGIEGKIEAVR 371
Cdd:cd03128    1 VAVLLFGGSEELELASPLDALREAGA----EVDVVSPDGGPVESD---VDLDDYDGLILPGGPGtpddLAWDEALLALLR 73
                         90
                 ....*....|....*...
gi 226733076 372 YVRENNIPFFGICLGMQM 389
Cdd:cd03128   74 EAAAAGKPVLGICLGAQL 91
GATase1_2 cd01745
Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain; This group ...
293-513 6.04e-11

Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain; This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine amidotransferases, or as domains in a much larger multifunctional synthase protein, such as CPSase.


Pssm-ID: 153216 [Multi-domain]  Cd Length: 189  Bit Score: 61.44  E-value: 6.04e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226733076 293 TVNIGLVGKYVEMQDC-YKSILEAFIHAGAanetKVNVISIHSEHINADNVeekLGTLDGVL-------VAPGFGERGIE 364
Cdd:cd01745    4 TARLREEEGGYERRDYlNQYYVDAVRKAGG----LPVLLPPVDDEEDLEQY---LELLDGLLltgggdvDPPLYGEEPHP 76
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226733076 365 G-----------KIEAVRYVRENNIPFFGICLGMQMsvieysrnilgyadansteMNektphpvVNLmeeqknitdkGGT 433
Cdd:cd01745   77 ElgpidperdafELALLRAALERGKPILGICRGMQL-------------------LN-------VAL----------GGT 120
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226733076 434 MRLgawkcDIKPNTLAHriYGEKTISErhrhryeynnkyadelqkaGLKASGVNPDtGLVEIVELENHPFFIGVQYHPEY 513
Cdd:cd01745  121 LYQ-----DIRVNSLHH--QAIKRLAD-------------------GLRVEARAPD-GVIEAIESPDRPFVLGVQWHPEW 173
GATase1_CPSase cd01744
Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II; This ...
367-528 7.04e-09

Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II; This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is a heterodimer consisting of two polypeptide chains referred to as the small and large subunit. Ammonia an intermediate during the biosynthesis of carbomyl phosphate produced by the hydrolysis of glutamine in the small subunit of the enzyme is delivered via a molecular tunnel between the remotely located carboxyphosphate active site in the large subunit. CPSase IIs belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site. This group also contains the sequence from the mammalian urea cycle form which has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I.


Pssm-ID: 153215 [Multi-domain]  Cd Length: 178  Bit Score: 55.20  E-value: 7.04e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226733076 367 IEAVRYVRENNIPFFGICLGMQmsvieysrnILG-YADANSTEM-------NektpHPVVNLMEEQKNITdkggtmrlga 438
Cdd:cd01744   59 IKTVRKLLGKKIPIFGICLGHQ---------LLAlALGAKTYKMkfghrgsN----HPVKDLITGRVYIT---------- 115
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226733076 439 wkcdikpntlAHriygektiserhrhryeyNNKYA---DELQKaGLKASGVNPDTGLVEIVELENHPFFiGVQYHPEyks 515
Cdd:cd01744  116 ----------SQ------------------NHGYAvdpDSLPG-GLEVTHVNLNDGTVEGIRHKDLPVF-SVQFHPE--- 162
                        170
                 ....*....|....*...
gi 226733076 516 tvANPHP-----IFVNFV 528
Cdd:cd01744  163 --ASPGPhdteyLFDEFL 178
puuD PRK11366
gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional
304-537 8.94e-08

gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional


Pssm-ID: 183101 [Multi-domain]  Cd Length: 254  Bit Score: 53.37  E-value: 8.94e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226733076 304 EMQDCYKSILEAFIHAGAanetkvnvISIHSEHINADNV--EEKLGTLDGVLVaPG---------FGERGIE-----GK- 366
Cdd:PRK11366  23 ATQTLQEKYLNAIIHAGG--------LPIALPHALAEPSllEQLLPKLDGIYL-PGspsnvqphlYGENGDEpdadpGRd 93
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226733076 367 ---IEAVRYVRENNIPFFGICLGMQMSVIEysrnilgyadanstemnektphpvvnlmeeqknitdKGGTM--RLgawkC 441
Cdd:PRK11366  94 llsMALINAALERRIPIFAICRGLQELVVA------------------------------------TGGSLhrKL----C 133
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226733076 442 DiKPNTLAHRIYGEKTISERHRHRYEY---------------NNKYADELQKAGLKASGVN-------PDtGLVEIVELE 499
Cdd:PRK11366 134 E-QPELLEHREDPELPVEQQYAPSHEVqveeggllsallpecSNFWVNSLHGQGAKVVSPRlrvearsPD-GLVEAVSVI 211
                        250       260       270
                 ....*....|....*....|....*....|....*....
gi 226733076 500 NHPFFIGVQYHPEYKST-VANPHPIFVNFVAAAVNAHKK 537
Cdd:PRK11366 212 NHPFALGVQWHPEWNSSeYALSRILFEGFITACQHHIAE 250
PRK12564 PRK12564
carbamoyl-phosphate synthase small subunit;
367-529 8.84e-07

carbamoyl-phosphate synthase small subunit;


Pssm-ID: 237139 [Multi-domain]  Cd Length: 360  Bit Score: 51.23  E-value: 8.84e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226733076 367 IEAVRYVRENNIPFFGICLGMQmsvieysrnILGYADANSTE--------MNektpHPVVNLmeeqknITDkggtmrlga 438
Cdd:PRK12564 238 IEMIRELLEKKIPIFGICLGHQ---------LLALALGAKTYkmkfghrgAN----HPVKDL------ETG--------- 289
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226733076 439 wKCDIkpnTlAHriygektiserhrhryeyNNKYA---DELqKAGLKASGVNPDTGLVEIVELENHPFFiGVQYHPEyks 515
Cdd:PRK12564 290 -KVEI---T-SQ------------------NHGFAvdeDSL-PANLEVTHVNLNDGTVEGLRHKDLPAF-SVQYHPE--- 341
                        170
                 ....*....|....*....
gi 226733076 516 tvANP-----HPIFVNFVA 529
Cdd:PRK12564 342 --ASPgphdsAYLFDEFVE 358
CarA COG0505
Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism, Nucleotide ...
350-529 2.50e-06

Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism, Nucleotide transport and metabolism]; Carbamoylphosphate synthase small subunit is part of the Pathway/BioSystem: Arginine biosynthesis


Pssm-ID: 440271 [Multi-domain]  Cd Length: 361  Bit Score: 49.63  E-value: 2.50e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226733076 350 DGVLVAPGFGE-RGIEGKIEAVRYVRENNIPFFGICLGMQmsvieysrnILGYA-DANSTEM-------NektpHPVVNL 420
Cdd:COG0505  219 DGVFLSNGPGDpAALDYAIETIRELLGKGIPIFGICLGHQ---------LLALAlGAKTYKLkfghrgaN----HPVKDL 285
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226733076 421 meeqknITDkggtmrlgawKCDIkpnTlAHriygektiserhrhryeyNNKYA---DELQKAGLKASGVNPDTGLVEIVE 497
Cdd:COG0505  286 ------ETG----------RVEI---T-SQ------------------NHGFAvdeDSLPATDLEVTHVNLNDGTVEGLR 327
                        170       180       190
                 ....*....|....*....|....*....|....*..
gi 226733076 498 LENHPFFiGVQYHPEykstvANP-----HPIFVNFVA 529
Cdd:COG0505  328 HKDLPAF-SVQYHPE-----ASPgphdsAYLFDRFIE 358
GATase1_IGP_Synthase cd01748
Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate ...
310-389 1.66e-05

Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS); Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.


Pssm-ID: 153219 [Multi-domain]  Cd Length: 198  Bit Score: 45.95  E-value: 1.66e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226733076 310 KSILEAFIHAGAanetKVNVISIHSEHINADnveeklgtldgVLVAPGFG----------ERGIegkIEAVRYVRENNIP 379
Cdd:cd01748   12 RSVANALERLGA----EVIITSDPEEILSAD-----------KLILPGVGafgdamanlrERGL---IEALKEAIASGKP 73
                         90
                 ....*....|
gi 226733076 380 FFGICLGMQM 389
Cdd:cd01748   74 FLGICLGMQL 83
hisH PRK13143
imidazole glycerol phosphate synthase subunit HisH; Provisional
311-389 6.95e-05

imidazole glycerol phosphate synthase subunit HisH; Provisional


Pssm-ID: 237289 [Multi-domain]  Cd Length: 200  Bit Score: 44.09  E-value: 6.95e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226733076 311 SILEAFIHAGAanetKVNVISIHSEHINADnveeklgtldgVLVAPG---FGE--RGIEGKIEAVRYVRENNIPFFGICL 385
Cdd:PRK13143  15 SVSKALERAGA----EVVITSDPEEILDAD-----------GIVLPGvgaFGAamENLSPLRDVILEAARSGKPFLGICL 79

                 ....
gi 226733076 386 GMQM 389
Cdd:PRK13143  80 GMQL 83
HisH COG0118
Imidazoleglycerol phosphate synthase glutamine amidotransferase subunit HisH [Amino acid ...
310-389 8.39e-05

Imidazoleglycerol phosphate synthase glutamine amidotransferase subunit HisH [Amino acid transport and metabolism]; Imidazoleglycerol phosphate synthase glutamine amidotransferase subunit HisH is part of the Pathway/BioSystem: Histidine biosynthesis


Pssm-ID: 439888 [Multi-domain]  Cd Length: 196  Bit Score: 43.49  E-value: 8.39e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226733076 310 KSILEAFIHAGAanetKVNVISIHSEHINADnveeklgtldGVLVaPGFGE-----RGIE--GKIEAVRYVRENNIPFFG 382
Cdd:COG0118   14 RSVAKALERLGA----EVVVTSDPDEIRAAD----------RLVL-PGVGAfgdamENLRerGLDEAIREAVAGGKPVLG 78

                 ....*..
gi 226733076 383 ICLGMQM 389
Cdd:COG0118   79 ICLGMQL 85
SIMIBI cd01983
SIMIBI (signal recognition particle, MinD and BioD)-class NTPases; SIMIBI (after signal ...
5-53 2.91e-04

SIMIBI (signal recognition particle, MinD and BioD)-class NTPases; SIMIBI (after signal recognition particle, MinD, and BioD), consists of signal recognition particle (SRP) GTPases, the assemblage of MinD-like ATPases, which are involved in protein localization, chromosome partitioning, and membrane transport, and a group of metabolic enzymes with kinase or related phosphate transferase activity. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.


Pssm-ID: 349751 [Multi-domain]  Cd Length: 107  Bit Score: 40.49  E-value: 2.91e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 226733076   5 KYIFVTGGVTSSlGKGIIAASLAKLLQGRGYRTTIQKFDPYINVD-PGTL 53
Cdd:cd01983    1 RVIAVTGGKGGV-GKTTLAAALAVALAAKGYKVLLIDLDDYVLIDgGGGL 49
hisH PRK13146
imidazole glycerol phosphate synthase subunit HisH; Provisional
315-389 3.26e-04

imidazole glycerol phosphate synthase subunit HisH; Provisional


Pssm-ID: 237290 [Multi-domain]  Cd Length: 209  Bit Score: 42.08  E-value: 3.26e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226733076 315 AFIHAGAanETKVNVISIHSEHINADNVeeklgtldgvlVAPGFGE-----RGIE--GKIEAVRYVRE-NNIPFFGICLG 386
Cdd:PRK13146  20 ALERAGA--GADVVVTADPDAVAAADRV-----------VLPGVGAfadcmRGLRavGLGEAVIEAVLaAGRPFLGICVG 86

                 ...
gi 226733076 387 MQM 389
Cdd:PRK13146  87 MQL 89
GATase1_1 cd01741
Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain; This group ...
312-389 7.22e-04

Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain; This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine amidotransferases, or as domains in a much larger multifunctional synthase protein, such as CPSase.


Pssm-ID: 153212 [Multi-domain]  Cd Length: 188  Bit Score: 40.69  E-value: 7.22e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226733076 312 ILEAFIHAGAANETKVNVISIHSEHINADnveekLGTLDGVLV------APGFGERGIEGKIEAVRYVRENNIPFFGICL 385
Cdd:cd01741   15 LFEDLLREAGAETIEIDVVDVYAGELLPD-----LDDYDGLVIlggpmsVDEDDYPWLKKLKELIRQALAAGKPVLGICL 89

                 ....
gi 226733076 386 GMQM 389
Cdd:cd01741   90 GHQL 93
GuaA1 COG0518
GMP synthase, glutamine amidotransferase domain [Nucleotide transport and metabolism]; GMP ...
360-389 1.93e-03

GMP synthase, glutamine amidotransferase domain [Nucleotide transport and metabolism]; GMP synthase, glutamine amidotransferase domain is part of the Pathway/BioSystem: Purine biosynthesis


Pssm-ID: 440284 [Multi-domain]  Cd Length: 225  Bit Score: 39.93  E-value: 1.93e-03
                         10        20        30
                 ....*....|....*....|....*....|
gi 226733076 360 ERGIEGKIEAVRYVRENNIPFFGICLGMQM 389
Cdd:COG0518   65 DPWLEDEPALIREAFELGKPVLGICYGAQL 94
PRK07765 PRK07765
aminodeoxychorismate/anthranilate synthase component II;
350-388 2.14e-03

aminodeoxychorismate/anthranilate synthase component II;


Pssm-ID: 181107 [Multi-domain]  Cd Length: 214  Bit Score: 39.65  E-value: 2.14e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 226733076 350 DGVLVAPGFG--ER-GIegKIEAVRYVRENNIPFFGICLGMQ 388
Cdd:PRK07765  48 DGVLLSPGPGtpERaGA--SIDMVRACAAAGTPLLGVCLGHQ 87
hisH PRK13141
imidazole glycerol phosphate synthase subunit HisH; Provisional
315-389 5.18e-03

imidazole glycerol phosphate synthase subunit HisH; Provisional


Pssm-ID: 237288 [Multi-domain]  Cd Length: 205  Bit Score: 38.57  E-value: 5.18e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226733076 315 AFIHAGAANetkvnvisIHS-----EHINADNV----EEKLGTLDGVLVaPGFG----------ERGIegkIEAVRYVRE 375
Cdd:PRK13141   3 AIIDYGMGN--------LRSvekalERLGAEAVitsdPEEILAADGVIL-PGVGafpdamanlrERGL---DEVIKEAVA 70
                         90
                 ....*....|....
gi 226733076 376 NNIPFFGICLGMQM 389
Cdd:PRK13141  71 SGKPLLGICLGMQL 84
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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