NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|148197|gb|AAA67594|]
View 

possibly rffM [Escherichia coli str. K-12 substr. MG1655]

Protein Classification

glycosyltransferase( domain architecture ID 10792320)

glycosyltransferase belonging to the WecG/TagA family catalyzes the formation of glycosidic bonds; may be involved in the biosynthesis of repeating polysaccharide units found in membrane glycolipids

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
PRK03692 PRK03692
putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
4-246 0e+00

putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional


:

Pssm-ID: 179631  Cd Length: 243  Bit Score: 505.29  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148197      4 NTTAPTYTLRGLQLIGWRDMQHALDYLFADGQLKQGTLVAINAEKMLTIEDNAEVRELINAAEFKYADGISVVRSVRKKY 83
Cdd:PRK03692   1 NTTAPKYTLRGLQLIGFRDMQHALDYLFADGQLKTGTLVAINAEKVLTAEDDAELRELINAAEYKYADGISVVRSIRKKY 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148197     84 PQAQVSRVAGADLWEELMARAGKEGTPVFLVGGKPEAVAQTEAKLRNQWNVNIVGSQDGYFKPEQRQALFERIHASGAQI 163
Cdd:PRK03692  81 PQAQVSRVAGADLWEALMARAGKEGTPVFLVGGKPEVLAQTEAKLRTQWNVNIVGSQDGYFTPEQRQALFERIHASGAKI 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148197    164 VTVAMGSPKQEIIM*DCRLVHPDALYMGVGGTYDVFTGHVKRAPKIWQTLGLEWLYRLLSQPSRIKRQLRLLRYLRWHYT 243
Cdd:PRK03692 161 VTVAMGSPKQEIFMRDCRLVYPDALYMGVGGTYDVFTGHVKRAPKIWQNLGLEWLYRLLSQPSRIRRQLRLLRYLRYHYT 240

                 ...
gi 148197    244 GNL 246
Cdd:PRK03692 241 GRL 243
 
Name Accession Description Interval E-value
PRK03692 PRK03692
putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
4-246 0e+00

putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional


Pssm-ID: 179631  Cd Length: 243  Bit Score: 505.29  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148197      4 NTTAPTYTLRGLQLIGWRDMQHALDYLFADGQLKQGTLVAINAEKMLTIEDNAEVRELINAAEFKYADGISVVRSVRKKY 83
Cdd:PRK03692   1 NTTAPKYTLRGLQLIGFRDMQHALDYLFADGQLKTGTLVAINAEKVLTAEDDAELRELINAAEYKYADGISVVRSIRKKY 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148197     84 PQAQVSRVAGADLWEELMARAGKEGTPVFLVGGKPEAVAQTEAKLRNQWNVNIVGSQDGYFKPEQRQALFERIHASGAQI 163
Cdd:PRK03692  81 PQAQVSRVAGADLWEALMARAGKEGTPVFLVGGKPEVLAQTEAKLRTQWNVNIVGSQDGYFTPEQRQALFERIHASGAKI 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148197    164 VTVAMGSPKQEIIM*DCRLVHPDALYMGVGGTYDVFTGHVKRAPKIWQTLGLEWLYRLLSQPSRIKRQLRLLRYLRWHYT 243
Cdd:PRK03692 161 VTVAMGSPKQEIFMRDCRLVYPDALYMGVGGTYDVFTGHVKRAPKIWQNLGLEWLYRLLSQPSRIRRQLRLLRYLRYHYT 240

                 ...
gi 148197    244 GNL 246
Cdd:PRK03692 241 GRL 243
wecG_tagA_cpsF TIGR00696
bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family; The WecG member of this ...
60-229 2.42e-95

bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family; The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]


Pssm-ID: 129779  Cd Length: 177  Bit Score: 276.67  E-value: 2.42e-95
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148197      60 ELINAAEFKYADGISVVRSVRKKYPqAQVSRVAGADLWEELMARAGKEGTPVFLVGGKPEAVAQTEAKLRNQWNVNIVGS 139
Cdd:TIGR00696   1 EVINQAELVTPDGIGVVWGLKLLGY-PQQSRVAGPDLMEELCQRAGKEKLPIFLYGGKPDVLQQLKVKLIKEYPKLKIVG 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148197     140 QDGYFKPEQRQALFERIHASGAQIVTVAMGSPKQEIIM*DCRLVHPDALYMGVGGTYDVFTGHVKRAPKIWQTLGLEWLY 219
Cdd:TIGR00696  80 AFGPLEPEERKAALAKIARSGAGIVFVGLGCPKQEIWMRNHRHLKPDAVMIGVGGSFDVFSGLVKRAPRWLMRLGLEWLY 159
                         170
                  ....*....|
gi 148197     220 RLLSQPSRIK 229
Cdd:TIGR00696 160 RLRMEPWRWK 169
WecG COG1922
UDP-N-acetyl-D-mannosaminuronic acid transferase, WecB/TagA/CpsF family [Cell wall/membrane ...
22-229 1.08e-82

UDP-N-acetyl-D-mannosaminuronic acid transferase, WecB/TagA/CpsF family [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 441525  Cd Length: 244  Bit Score: 246.99  E-value: 1.08e-82
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148197    22 DMQHALDYLFADGQLKQ-GTLVAINAEKMLTIEDNAEVRELINAAEFKYADGISVVRSVRKKyPQAQVSRVAGADLWEEL 100
Cdd:COG1922  15 TMEEAVERILEALEEGRpGYVVTANAEHLMLARRDPELREALNRADLVLPDGIGVVWAARLL-GRPLPERVTGSDLMPAL 93
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148197   101 MARAGKEGTPVFLVGGKPEAVAQTEAKLRNQW-NVNIVGSQDGYFK-PEQRQALFERIHASGAQIVTVAMGSPKQEIIM* 178
Cdd:COG1922  94 LERAAEKGLRVFLLGGKPGVAEKAAANLRQRYpGLRIAGTHHGYFRfPEEEEAIIERINASGPDILFVGLGAPKQEKWIA 173
                       170       180       190       200       210
                ....*....|....*....|....*....|....*....|....*....|.
gi 148197   179 DCRLVHPDALYMGVGGTYDVFTGHVKRAPKIWQTLGLEWLYRLLSQPSRIK 229
Cdd:COG1922 174 RNRDRLPVAVIIGVGGAFDFLAGTVKRAPRWMQRLGLEWLYRLLQEPRRLW 224
Glyco_transf_WecG_TagA cd06533
The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus ...
62-227 4.28e-67

The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.


Pssm-ID: 119439  Cd Length: 171  Bit Score: 205.01  E-value: 4.28e-67
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148197    62 INAAEFKYADGISVVRSVRKKYpQAQVSRVAGADLWEELMARAGKEGTPVFLVGGKPEAVAQTEAKLRNQW-NVNIVGSQ 140
Cdd:cd06533   1 LNSADLVLPDGIGVVWAARLLG-GPLPERVTGSDLMPALLELAAQKGLRVFLLGAKPEVLEKAAERLRARYpGLKIVGYH 79
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148197   141 DGYFKPEQRQALFERIHASGAQIVTVAMGSPKQEIIM*DCRLVHPDALYMGVGGTYDVFTGHVKRAPKIWQTLGLEWLYR 220
Cdd:cd06533  80 HGYFGPEEEEEIIERINASGADILFVGLGAPKQELWIARHKDRLPVPVAIGVGGSFDFLAGTVKRAPKWMQKLGLEWLYR 159

                ....*..
gi 148197   221 LLSQPSR 227
Cdd:cd06533 160 LLQEPRR 166
Glyco_tran_WecG pfam03808
Glycosyl transferase WecG/TagA/CpsF family; The WecG member of this family, believed to be ...
65-229 4.55e-66

Glycosyl transferase WecG/TagA/CpsF family; The WecG member of this family, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.


Pssm-ID: 461059  Cd Length: 168  Bit Score: 202.30  E-value: 4.55e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148197      65 AEFKYADGISVVRSVRKKYpQAQVSRVAGADLWEELMARAGKEGTPVFLVGGKPEAVAQTEAKLRNQW-NVNIVGSQDGY 143
Cdd:pfam03808   1 ADLVLPDGIGVVWAARLLG-RPLPERVAGSDLFPALLEAAARRGLRVFLLGGKPGVAEKAAENLRQRYpGLRIAGRHHGY 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148197     144 FKPEQRQALFERIHASGAQIVTVAMGSPKQEIIM*DCRLVHPDALYMGVGGTYDVFTGHVKRAPKIWQTLGLEWLYRLLS 223
Cdd:pfam03808  80 FGKEEEEAIIEAINASGPDILFVGLGAPKQEKWIARNRDGLPVAVIIGVGGSFDFLAGRVKRAPRWMQRLGLEWLYRLLQ 159

                  ....*.
gi 148197     224 QPSRIK 229
Cdd:pfam03808 160 EPKRLW 165
 
Name Accession Description Interval E-value
PRK03692 PRK03692
putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
4-246 0e+00

putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional


Pssm-ID: 179631  Cd Length: 243  Bit Score: 505.29  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148197      4 NTTAPTYTLRGLQLIGWRDMQHALDYLFADGQLKQGTLVAINAEKMLTIEDNAEVRELINAAEFKYADGISVVRSVRKKY 83
Cdd:PRK03692   1 NTTAPKYTLRGLQLIGFRDMQHALDYLFADGQLKTGTLVAINAEKVLTAEDDAELRELINAAEYKYADGISVVRSIRKKY 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148197     84 PQAQVSRVAGADLWEELMARAGKEGTPVFLVGGKPEAVAQTEAKLRNQWNVNIVGSQDGYFKPEQRQALFERIHASGAQI 163
Cdd:PRK03692  81 PQAQVSRVAGADLWEALMARAGKEGTPVFLVGGKPEVLAQTEAKLRTQWNVNIVGSQDGYFTPEQRQALFERIHASGAKI 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148197    164 VTVAMGSPKQEIIM*DCRLVHPDALYMGVGGTYDVFTGHVKRAPKIWQTLGLEWLYRLLSQPSRIKRQLRLLRYLRWHYT 243
Cdd:PRK03692 161 VTVAMGSPKQEIFMRDCRLVYPDALYMGVGGTYDVFTGHVKRAPKIWQNLGLEWLYRLLSQPSRIRRQLRLLRYLRYHYT 240

                 ...
gi 148197    244 GNL 246
Cdd:PRK03692 241 GRL 243
wecG_tagA_cpsF TIGR00696
bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family; The WecG member of this ...
60-229 2.42e-95

bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family; The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]


Pssm-ID: 129779  Cd Length: 177  Bit Score: 276.67  E-value: 2.42e-95
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148197      60 ELINAAEFKYADGISVVRSVRKKYPqAQVSRVAGADLWEELMARAGKEGTPVFLVGGKPEAVAQTEAKLRNQWNVNIVGS 139
Cdd:TIGR00696   1 EVINQAELVTPDGIGVVWGLKLLGY-PQQSRVAGPDLMEELCQRAGKEKLPIFLYGGKPDVLQQLKVKLIKEYPKLKIVG 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148197     140 QDGYFKPEQRQALFERIHASGAQIVTVAMGSPKQEIIM*DCRLVHPDALYMGVGGTYDVFTGHVKRAPKIWQTLGLEWLY 219
Cdd:TIGR00696  80 AFGPLEPEERKAALAKIARSGAGIVFVGLGCPKQEIWMRNHRHLKPDAVMIGVGGSFDVFSGLVKRAPRWLMRLGLEWLY 159
                         170
                  ....*....|
gi 148197     220 RLLSQPSRIK 229
Cdd:TIGR00696 160 RLRMEPWRWK 169
WecG COG1922
UDP-N-acetyl-D-mannosaminuronic acid transferase, WecB/TagA/CpsF family [Cell wall/membrane ...
22-229 1.08e-82

UDP-N-acetyl-D-mannosaminuronic acid transferase, WecB/TagA/CpsF family [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 441525  Cd Length: 244  Bit Score: 246.99  E-value: 1.08e-82
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148197    22 DMQHALDYLFADGQLKQ-GTLVAINAEKMLTIEDNAEVRELINAAEFKYADGISVVRSVRKKyPQAQVSRVAGADLWEEL 100
Cdd:COG1922  15 TMEEAVERILEALEEGRpGYVVTANAEHLMLARRDPELREALNRADLVLPDGIGVVWAARLL-GRPLPERVTGSDLMPAL 93
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148197   101 MARAGKEGTPVFLVGGKPEAVAQTEAKLRNQW-NVNIVGSQDGYFK-PEQRQALFERIHASGAQIVTVAMGSPKQEIIM* 178
Cdd:COG1922  94 LERAAEKGLRVFLLGGKPGVAEKAAANLRQRYpGLRIAGTHHGYFRfPEEEEAIIERINASGPDILFVGLGAPKQEKWIA 173
                       170       180       190       200       210
                ....*....|....*....|....*....|....*....|....*....|.
gi 148197   179 DCRLVHPDALYMGVGGTYDVFTGHVKRAPKIWQTLGLEWLYRLLSQPSRIK 229
Cdd:COG1922 174 RNRDRLPVAVIIGVGGAFDFLAGTVKRAPRWMQRLGLEWLYRLLQEPRRLW 224
Glyco_transf_WecG_TagA cd06533
The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus ...
62-227 4.28e-67

The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.


Pssm-ID: 119439  Cd Length: 171  Bit Score: 205.01  E-value: 4.28e-67
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148197    62 INAAEFKYADGISVVRSVRKKYpQAQVSRVAGADLWEELMARAGKEGTPVFLVGGKPEAVAQTEAKLRNQW-NVNIVGSQ 140
Cdd:cd06533   1 LNSADLVLPDGIGVVWAARLLG-GPLPERVTGSDLMPALLELAAQKGLRVFLLGAKPEVLEKAAERLRARYpGLKIVGYH 79
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148197   141 DGYFKPEQRQALFERIHASGAQIVTVAMGSPKQEIIM*DCRLVHPDALYMGVGGTYDVFTGHVKRAPKIWQTLGLEWLYR 220
Cdd:cd06533  80 HGYFGPEEEEEIIERINASGADILFVGLGAPKQELWIARHKDRLPVPVAIGVGGSFDFLAGTVKRAPKWMQKLGLEWLYR 159

                ....*..
gi 148197   221 LLSQPSR 227
Cdd:cd06533 160 LLQEPRR 166
Glyco_tran_WecG pfam03808
Glycosyl transferase WecG/TagA/CpsF family; The WecG member of this family, believed to be ...
65-229 4.55e-66

Glycosyl transferase WecG/TagA/CpsF family; The WecG member of this family, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.


Pssm-ID: 461059  Cd Length: 168  Bit Score: 202.30  E-value: 4.55e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148197      65 AEFKYADGISVVRSVRKKYpQAQVSRVAGADLWEELMARAGKEGTPVFLVGGKPEAVAQTEAKLRNQW-NVNIVGSQDGY 143
Cdd:pfam03808   1 ADLVLPDGIGVVWAARLLG-RPLPERVAGSDLFPALLEAAARRGLRVFLLGGKPGVAEKAAENLRQRYpGLRIAGRHHGY 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148197     144 FKPEQRQALFERIHASGAQIVTVAMGSPKQEIIM*DCRLVHPDALYMGVGGTYDVFTGHVKRAPKIWQTLGLEWLYRLLS 223
Cdd:pfam03808  80 FGKEEEEAIIEAINASGPDILFVGLGAPKQEKWIARNRDGLPVAVIIGVGGSFDFLAGRVKRAPRWMQRLGLEWLYRLLQ 159

                  ....*.
gi 148197     224 QPSRIK 229
Cdd:pfam03808 160 EPKRLW 165
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH