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Conserved domains on  [gi|1616650|gb|AAB16826|]
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calcium-activated potassium channel beta subunit, partial [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
CaKB super family cl03925
Calcium-activated potassium channel, beta subunit;
6-112 5.69e-43

Calcium-activated potassium channel, beta subunit;


The actual alignment was detected with superfamily member pfam03185:

Pssm-ID: 460838  Cd Length: 195  Bit Score: 138.93  E-value: 5.69e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1616650      6 EELKGKKVPQYPCL--WVNVSAAGRWAVLYHTEDTRDQNQQCSYIPGSVDNYQTARADVEKVRAKFQEQ--QVFYCFSAP 81
Cdd:pfam03185  65 CGSDCRGVSQYPCLqvYVNLSSSGKVALLHHDEETLDLNPKCFYIPKCQRDYQELLESVENIKENFKKHngQPFPCYYDP 144
                          90       100       110
                  ....*....|....*....|....*....|.
gi 1616650     82 RGNETSVLFQRLYGPQALLFSLFWPTFLLTG 112
Cdd:pfam03185 145 SERPEDVILTRKYDPSVLLHCLLWPSLMLLG 175
 
Name Accession Description Interval E-value
CaKB pfam03185
Calcium-activated potassium channel, beta subunit;
6-112 5.69e-43

Calcium-activated potassium channel, beta subunit;


Pssm-ID: 460838  Cd Length: 195  Bit Score: 138.93  E-value: 5.69e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1616650      6 EELKGKKVPQYPCL--WVNVSAAGRWAVLYHTEDTRDQNQQCSYIPGSVDNYQTARADVEKVRAKFQEQ--QVFYCFSAP 81
Cdd:pfam03185  65 CGSDCRGVSQYPCLqvYVNLSSSGKVALLHHDEETLDLNPKCFYIPKCQRDYQELLESVENIKENFKKHngQPFPCYYDP 144
                          90       100       110
                  ....*....|....*....|....*....|.
gi 1616650     82 RGNETSVLFQRLYGPQALLFSLFWPTFLLTG 112
Cdd:pfam03185 145 SERPEDVILTRKYDPSVLLHCLLWPSLMLLG 175
 
Name Accession Description Interval E-value
CaKB pfam03185
Calcium-activated potassium channel, beta subunit;
6-112 5.69e-43

Calcium-activated potassium channel, beta subunit;


Pssm-ID: 460838  Cd Length: 195  Bit Score: 138.93  E-value: 5.69e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1616650      6 EELKGKKVPQYPCL--WVNVSAAGRWAVLYHTEDTRDQNQQCSYIPGSVDNYQTARADVEKVRAKFQEQ--QVFYCFSAP 81
Cdd:pfam03185  65 CGSDCRGVSQYPCLqvYVNLSSSGKVALLHHDEETLDLNPKCFYIPKCQRDYQELLESVENIKENFKKHngQPFPCYYDP 144
                          90       100       110
                  ....*....|....*....|....*....|.
gi 1616650     82 RGNETSVLFQRLYGPQALLFSLFWPTFLLTG 112
Cdd:pfam03185 145 SERPEDVILTRKYDPSVLLHCLLWPSLMLLG 175
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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