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Conserved domains on  [gi|957315|gb|AAB34577|]
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Myc homolog, partial [Crassostrea virginica]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
VWC smart00214
von Willebrand factor (vWF) type C domain;
11-68 8.19e-06

von Willebrand factor (vWF) type C domain;


:

Pssm-ID: 214564  Cd Length: 59  Bit Score: 43.27  E-value: 8.19e-06
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 957315       11 CIYKGSIYRQGETWEDGCDFKCTCVDETrgMYQCTAR-CKTYTSlpsvCKMYD---VPGECC 68
Cdd:smart00214   1 CVHNGRVYNDGETWKPDPCQICTCLDGT--TVLCDPVeCPPPPD----CPNPErvkPPGECC 56
ShKT smart00254
ShK toxin domain; ShK toxin domain
 143-177 9.87e-05

ShK toxin domain; ShK toxin domain


:

Pssm-ID: 214586 [Multi-domain]  Cd Length: 33  Bit Score: 39.28  E-value: 9.87e-05
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 957315      143 CVDRINNCALYGKSVCTGTyqPWATDNCPKYCNLC 177
Cdd:smart00254   1 CVDRHPDCAAWAKGFCTNP--FYMKSNCPKTCGFC 33
 
Name Accession Description Interval E-value
VWC smart00214
von Willebrand factor (vWF) type C domain;
11-68 8.19e-06

von Willebrand factor (vWF) type C domain;


Pssm-ID: 214564  Cd Length: 59  Bit Score: 43.27  E-value: 8.19e-06
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 957315       11 CIYKGSIYRQGETWEDGCDFKCTCVDETrgMYQCTAR-CKTYTSlpsvCKMYD---VPGECC 68
Cdd:smart00214   1 CVHNGRVYNDGETWKPDPCQICTCLDGT--TVLCDPVeCPPPPD----CPNPErvkPPGECC 56
ShKT smart00254
ShK toxin domain; ShK toxin domain
 143-177 9.87e-05

ShK toxin domain; ShK toxin domain


Pssm-ID: 214586 [Multi-domain]  Cd Length: 33  Bit Score: 39.28  E-value: 9.87e-05
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 957315      143 CVDRINNCALYGKSVCTGTyqPWATDNCPKYCNLC 177
Cdd:smart00254   1 CVDRHPDCAAWAKGFCTNP--FYMKSNCPKTCGFC 33
ShK pfam01549
ShK domain-like; This domain of is found in several C. elegans proteins. The domain is 30 ...
 143-177 4.35e-03

ShK domain-like; This domain of is found in several C. elegans proteins. The domain is 30 amino acids long and rich in cysteine residues. There are 6 conserved cysteine positions in the domain that form three disulphide bridges. The domain is found in the potassium channel inhibitor ShK in sea anemone.


Pssm-ID: 426319  Cd Length: 37  Bit Score: 34.68  E-value: 4.35e-03
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 957315     143 CVDRINNCALYGKSVCTG-TYQPWATDNCPKYCNLC 177
Cdd:pfam01549   2 CVDPHSDCASWAALGCTSpFYQDFMKENCPKTCGFC 37
 
Name Accession Description Interval E-value
VWC smart00214
von Willebrand factor (vWF) type C domain;
11-68 8.19e-06

von Willebrand factor (vWF) type C domain;


Pssm-ID: 214564  Cd Length: 59  Bit Score: 43.27  E-value: 8.19e-06
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 957315       11 CIYKGSIYRQGETWEDGCDFKCTCVDETrgMYQCTAR-CKTYTSlpsvCKMYD---VPGECC 68
Cdd:smart00214   1 CVHNGRVYNDGETWKPDPCQICTCLDGT--TVLCDPVeCPPPPD----CPNPErvkPPGECC 56
ShKT smart00254
ShK toxin domain; ShK toxin domain
 143-177 9.87e-05

ShK toxin domain; ShK toxin domain


Pssm-ID: 214586 [Multi-domain]  Cd Length: 33  Bit Score: 39.28  E-value: 9.87e-05
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 957315      143 CVDRINNCALYGKSVCTGTyqPWATDNCPKYCNLC 177
Cdd:smart00254   1 CVDRHPDCAAWAKGFCTNP--FYMKSNCPKTCGFC 33
ShK pfam01549
ShK domain-like; This domain of is found in several C. elegans proteins. The domain is 30 ...
 143-177 4.35e-03

ShK domain-like; This domain of is found in several C. elegans proteins. The domain is 30 amino acids long and rich in cysteine residues. There are 6 conserved cysteine positions in the domain that form three disulphide bridges. The domain is found in the potassium channel inhibitor ShK in sea anemone.


Pssm-ID: 426319  Cd Length: 37  Bit Score: 34.68  E-value: 4.35e-03
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 957315     143 CVDRINNCALYGKSVCTG-TYQPWATDNCPKYCNLC 177
Cdd:pfam01549   2 CVDPHSDCASWAALGCTSpFYQDFMKENCPKTCGFC 37
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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