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Conserved domains on  [gi|1184960|gb|AAC33485|]
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glutamate decarboxylase 2 [Arabidopsis thaliana]

Protein Classification

glutamate decarboxylase( domain architecture ID 10019990)

glutamate decarboxylase converts glutamate to gamma-aminobutyrate (GABA), consuming one intracellular proton in the reaction

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Glu-decarb-GAD TIGR01788
glutamate decarboxylase; This model represents the pyridoxal phosphate-dependent glutamate ...
17-444 0e+00

glutamate decarboxylase; This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA).


:

Pssm-ID: 130848  Cd Length: 431  Bit Score: 748.46  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184960     17 FGSRYVRTTLPKYEIGENSIPKDAAYQIIKDELMLDGNPRLNLASFVTTWMEPECDKLIMDSINKNYVDMDEYPVTTELQ 96
Cdd:TIGR01788   3 YGSRAVSTGIPKYRMPEEEMPPDAAYQLIHDELSLDGNPRLNLATFVTTWMEPEARKLMDETINKNMIDKDEYPQTAEIE 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184960     97 NRCVNIIARLFNAPLEESEtAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPYDKPNIVTGANVQVCWEKFARYFEVE 176
Cdd:TIGR01788  83 NRCVNMLADLWHAPAKDAE-AVGTSTIGSSEAIMLGGLAMKWRWRKRMEAAGKPTDKPNLVMGSNVQVCWEKFARYFDVE 161
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184960    177 LKEVNLSEGYYVMDPDKAAEMVDENTICVAAILGSTLNGEFEDVKRLNDLLVKKNEETGWNTPIHVDAASGGFIAPFIYP 256
Cdd:TIGR01788 162 LREVPMDPGRYVIDPEQVVEAVDENTIGVVCILGTTYTGEYEDVKALNDALDEYNAKTGWDIPIHVDAASGGFIAPFVYP 241
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184960    257 ELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVWRAAEDLPEELIFHINYLGADQPTFTLNFSKGSSQIIAQYYQLIRLGF 336
Cdd:TIGR01788 242 DLEWDFRLPRVKSINVSGHKYGLVYPGVGWVIWRDEEALPEELIFHVNYLGGDEPTFTLNFSRPANQVIAQYYNFLRLGR 321
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184960    337 EGYKNVMENCIENMVVLKEGIEKTERFNIVSKDQGVPVVAFSLKD--HSFHNEFEISEMLRRFGWIVPAYTMPADAQHIT 414
Cdd:TIGR01788 322 EGYRKIMQNSLDVARYLAEEIAKLGPFEIISDGSGIPLVAFKLKDdaDPGYTLYDLSHRLRERGWIVPAYTLPKNAEDIV 401
                         410       420       430
                  ....*....|....*....|....*....|
gi 1184960    415 VLRVVIREDFSRTLAERLVADISKVLHELD 444
Cdd:TIGR01788 402 VMRIVVREGFSRDLAELLIEDIEAALAYLE 431
 
Name Accession Description Interval E-value
Glu-decarb-GAD TIGR01788
glutamate decarboxylase; This model represents the pyridoxal phosphate-dependent glutamate ...
17-444 0e+00

glutamate decarboxylase; This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA).


Pssm-ID: 130848  Cd Length: 431  Bit Score: 748.46  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184960     17 FGSRYVRTTLPKYEIGENSIPKDAAYQIIKDELMLDGNPRLNLASFVTTWMEPECDKLIMDSINKNYVDMDEYPVTTELQ 96
Cdd:TIGR01788   3 YGSRAVSTGIPKYRMPEEEMPPDAAYQLIHDELSLDGNPRLNLATFVTTWMEPEARKLMDETINKNMIDKDEYPQTAEIE 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184960     97 NRCVNIIARLFNAPLEESEtAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPYDKPNIVTGANVQVCWEKFARYFEVE 176
Cdd:TIGR01788  83 NRCVNMLADLWHAPAKDAE-AVGTSTIGSSEAIMLGGLAMKWRWRKRMEAAGKPTDKPNLVMGSNVQVCWEKFARYFDVE 161
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184960    177 LKEVNLSEGYYVMDPDKAAEMVDENTICVAAILGSTLNGEFEDVKRLNDLLVKKNEETGWNTPIHVDAASGGFIAPFIYP 256
Cdd:TIGR01788 162 LREVPMDPGRYVIDPEQVVEAVDENTIGVVCILGTTYTGEYEDVKALNDALDEYNAKTGWDIPIHVDAASGGFIAPFVYP 241
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184960    257 ELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVWRAAEDLPEELIFHINYLGADQPTFTLNFSKGSSQIIAQYYQLIRLGF 336
Cdd:TIGR01788 242 DLEWDFRLPRVKSINVSGHKYGLVYPGVGWVIWRDEEALPEELIFHVNYLGGDEPTFTLNFSRPANQVIAQYYNFLRLGR 321
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184960    337 EGYKNVMENCIENMVVLKEGIEKTERFNIVSKDQGVPVVAFSLKD--HSFHNEFEISEMLRRFGWIVPAYTMPADAQHIT 414
Cdd:TIGR01788 322 EGYRKIMQNSLDVARYLAEEIAKLGPFEIISDGSGIPLVAFKLKDdaDPGYTLYDLSHRLRERGWIVPAYTLPKNAEDIV 401
                         410       420       430
                  ....*....|....*....|....*....|
gi 1184960    415 VLRVVIREDFSRTLAERLVADISKVLHELD 444
Cdd:TIGR01788 402 VMRIVVREGFSRDLAELLIEDIEAALAYLE 431
Pyridoxal_deC pfam00282
Pyridoxal-dependent decarboxylase conserved domain;
33-380 1.03e-125

Pyridoxal-dependent decarboxylase conserved domain;


Pssm-ID: 395219  Cd Length: 373  Bit Score: 370.98  E-value: 1.03e-125
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184960     33 ENSIP-KDAAYQIIKD-ELMLDGNPRLNLASFVTTWMEPECDKLIM--------------DSINKNYVDMDEYPVTTELQ 96
Cdd:pfam00282   2 GYLKPlLPLAAPIIPEpELQIDGDIRRNLMPGVTTWHSPHFHAYMPtgnsypsllgdmltDAINCNGFTWESSPACTELE 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184960     97 NRCVNIIARLFNAPLEESET-AVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKP------YDKPNIVTGANVQVCWEKF 169
Cdd:pfam00282  82 NVVMNWLGEMLGLPAEFLGQeGGGVLQPGSSESNLLALLAARTKWIKRMKAAGKPadssgiLAKLVAYTSDQAHSSIEKA 161
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184960    170 ARYFEVELKEVNLSEG--YYVMDPDKAAEMVDENTI---CVAAILGSTLNGEFEDVKRLNDLLVKkneetgWNTPIHVDA 244
Cdd:pfam00282 162 ALYGGVKLREIPSDDNgkMRGMDLEKAIEEDKENGLipfFVVATLGTTGSGAFDDLQELGDICAK------HNLWLHVDA 235
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184960    245 ASGG--FIAPFIYPeleWDFRLPLVKSINVSGHKYGLVYAGIGWVVWRAAEDLPEELIFHINYLG-----ADQPTFTLNF 317
Cdd:pfam00282 236 AYGGsaFICPEFRH---WLFGIERADSITFNPHKWMLVLLDCSAVWVKDKEALQQAFQFNPLYLGhtdsaYDTGHKQIPL 312
                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1184960    318 SKGssQIIAQYYQLIR-LGFEGYKNVMENCIENMVVLKEGIEKTERFNIVSKdQGVPVVAFSLK 380
Cdd:pfam00282 313 SRR--FRILKLWFVIRsLGVEGLQNQIRRHVELAQYLEALIRKDGRFEICAE-VGLGLVCFRLK 373
DOPA_deC_like cd06450
DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent ...
58-438 4.76e-105

DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.


Pssm-ID: 99743 [Multi-domain]  Cd Length: 345  Bit Score: 317.22  E-value: 4.76e-105
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184960   58 NLASFVTTwMEPECDKLIMDSINKNYVDM--DEYPVTTELQNRCVNIIARLFNAPleeSETAVGVGTVGSSEAIMLAGLA 135
Cdd:cd06450   1 FLAGFVTT-MDPPALLLEMLTSAKNAIDFtwDESPAATEMEAEVVNWLAKLFGLP---SEDADGVFTSGGSESNLLALLA 76
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184960  136 FKRKWQNKRKA-EGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVNLSEGYyVMDPDKAAEMVDE------NTICVAAI 208
Cdd:cd06450  77 ARDRARKRLKAgGGRGIDKLVIVCSDQAHVSVEKAAAYLDVKVRLVPVDEDG-RMDPEALEAAIDEdkaeglNPIMVVAT 155
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184960  209 LGSTLNGEFEDVKRLNDLLVKKNeetgwnTPIHVDAASGGFIAPFIYPELeWDFRLPLVKSINVSGHKYGLVYAGIGWVV 288
Cdd:cd06450 156 AGTTDTGAIDPLEEIADLAEKYD------LWLHVDAAYGGFLLPFPEPRH-LDFGIERVDSISVDPHKYGLVPLGCSAVL 228
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184960  289 WRAAedlpeelifhinylgadqptftlnfskgssqiiAQYYQLIRLGFEGYKNVMENCIENMVVLKEGIEKTERFNIVSK 368
Cdd:cd06450 229 VRAL---------------------------------KLWATLRRFGRDGYGEHIDRIVDLAKYLAELIRADPGFELLGE 275
                       330       340       350       360       370       380       390
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1184960  369 DQgVPVVAFSLKDHSFHNE--FEISEMLR-RFGWIVPAYTMPadaqHITVLRVVIREDF-SRTLAERLVADISK 438
Cdd:cd06450 276 PN-LSLVCFRLKPSVKLDElnYDLSDRLNeRGGWHVPATTLG----GPNVLRFVVTNPLtTRDDADALLEDIER 344
GadA COG0076
Glutamate or tyrosine decarboxylase or a related PLP-dependent protein [Amino acid transport ...
28-442 3.05e-98

Glutamate or tyrosine decarboxylase or a related PLP-dependent protein [Amino acid transport and metabolism]; Glutamate or tyrosine decarboxylase or a related PLP-dependent protein is part of the Pathway/BioSystem: Pantothenate/CoA biosynthesis


Pssm-ID: 439846 [Multi-domain]  Cd Length: 460  Bit Score: 303.68  E-value: 3.05e-98
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184960   28 KYEIGENSIPKDAAYQIIKD---ELMLDGNPRLNLAsFVT--TWMEPECDKLIMDSINKNYVDMDEYPVTTELQNRCVNI 102
Cdd:COG0076  37 DEPLPEEGLPPEEALAELEDlvlPGSVDWNHPRFLA-FVTggTTPAALAADLLASALNQNMGDWDTSPAATELEREVVRW 115
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184960  103 IARLFNAPleesETAVGVGTVGSSEAIMLAGLAFKRKWQNKR-KAEG-KPYDKPNIVTGANVQVCWEKFARYFEVE---L 177
Cdd:COG0076 116 LADLLGLP----EGAGGVFTSGGTEANLLALLAARDRALARRvRAEGlPGAPRPRIVVSEEAHSSVDKAARLLGLGrdaL 191
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184960  178 KEVNLSEGYyVMDPDKAAEMVDE------NTICVAAILGSTLNGEFEDVKRLNDLLvkknEETGWntPIHVDAASGGFIA 251
Cdd:COG0076 192 RKVPVDEDG-RMDPDALEAAIDEdraaglNPIAVVATAGTTNTGAIDPLAEIADIA----REHGL--WLHVDAAYGGFAL 264
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184960  252 PfiYPELEWDF-RLPLVKSINVSGHKYGLVYAGIGWVVWRAAEDLPEELIFHINYLGA------DQPTFTLNFSKgSSQI 324
Cdd:COG0076 265 P--SPELRHLLdGIERADSITVDPHKWLYVPYGCGAVLVRDPELLREAFSFHASYLGPaddgvpNLGDYTLELSR-RFRA 341
                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184960  325 IAQYYQLIRLGFEGYKNVMENCIENMVVLKEGIEKTERFNIVSKDQGvPVVAFSLKDHSFHNE----FEISEMLRRFGwi 400
Cdd:COG0076 342 LKLWATLRALGREGYRELIERCIDLARYLAEGIAALPGFELLAPPEL-NIVCFRYKPAGLDEEdalnYALRDRLRARG-- 418
                       410       420       430       440
                ....*....|....*....|....*....|....*....|...
gi 1184960  401 vPAYTMPADAQHITVLRVVIREDFSRT-LAERLVADISKVLHE 442
Cdd:COG0076 419 -RAFLSPTKLDGRVVLRLVVLNPRTTEdDVDALLDDLREAAAE 460
PRK02769 PRK02769
histidine decarboxylase; Provisional
70-349 1.65e-12

histidine decarboxylase; Provisional


Pssm-ID: 235068 [Multi-domain]  Cd Length: 380  Bit Score: 68.92  E-value: 1.65e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184960    70 ECDKLIMDSINK--NYVDMDEYPVTTELQNRCV-NIIARLFNAPLEESEtavGVGTVGSSEAIM----LAGLAFkrkwqn 142
Cdd:PRK02769  38 ALKRFFSFSINNcgDPYSKSNYPLNSFDFERDVmNFFAELFKIPFNESW---GYITNGGTEGNLygcyLARELF------ 108
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184960   143 krkaegkpydkPN--IVTGANVQVCWEKFARYFEVELKEVN-LSEGYyvMDPDKAAEMVDENT----ICVAAIlGSTLNG 215
Cdd:PRK02769 109 -----------PDgtLYYSKDTHYSVSKIARLLRIKSRVITsLPNGE--IDYDDLISKIKENKnqppIIFANI-GTTMTG 174
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184960   216 EFEDVKRLNDLLVKKNEEtgwNTPIHVDAASGGFIAPFIYPELEWDFRLPlVKSINVSGHKY-------GLVYAGIGWVv 288
Cdd:PRK02769 175 AIDNIKEIQEILKKIGID---DYYIHADAALSGMILPFVNNPPPFSFADG-IDSIAISGHKFigspmpcGIVLAKKKYV- 249
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1184960   289 wraaedlpEELIFHINYLGA-DQptfTLNFSKGSSQIIAQYYQLIRLGFEGYKNVMENCIEN 349
Cdd:PRK02769 250 --------ERISVDVDYIGSrDQ---TISGSRNGHTALLLWAAIRSLGSKGLRQRVQHCLDM 300
 
Name Accession Description Interval E-value
Glu-decarb-GAD TIGR01788
glutamate decarboxylase; This model represents the pyridoxal phosphate-dependent glutamate ...
17-444 0e+00

glutamate decarboxylase; This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA).


Pssm-ID: 130848  Cd Length: 431  Bit Score: 748.46  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184960     17 FGSRYVRTTLPKYEIGENSIPKDAAYQIIKDELMLDGNPRLNLASFVTTWMEPECDKLIMDSINKNYVDMDEYPVTTELQ 96
Cdd:TIGR01788   3 YGSRAVSTGIPKYRMPEEEMPPDAAYQLIHDELSLDGNPRLNLATFVTTWMEPEARKLMDETINKNMIDKDEYPQTAEIE 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184960     97 NRCVNIIARLFNAPLEESEtAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPYDKPNIVTGANVQVCWEKFARYFEVE 176
Cdd:TIGR01788  83 NRCVNMLADLWHAPAKDAE-AVGTSTIGSSEAIMLGGLAMKWRWRKRMEAAGKPTDKPNLVMGSNVQVCWEKFARYFDVE 161
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184960    177 LKEVNLSEGYYVMDPDKAAEMVDENTICVAAILGSTLNGEFEDVKRLNDLLVKKNEETGWNTPIHVDAASGGFIAPFIYP 256
Cdd:TIGR01788 162 LREVPMDPGRYVIDPEQVVEAVDENTIGVVCILGTTYTGEYEDVKALNDALDEYNAKTGWDIPIHVDAASGGFIAPFVYP 241
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184960    257 ELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVWRAAEDLPEELIFHINYLGADQPTFTLNFSKGSSQIIAQYYQLIRLGF 336
Cdd:TIGR01788 242 DLEWDFRLPRVKSINVSGHKYGLVYPGVGWVIWRDEEALPEELIFHVNYLGGDEPTFTLNFSRPANQVIAQYYNFLRLGR 321
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184960    337 EGYKNVMENCIENMVVLKEGIEKTERFNIVSKDQGVPVVAFSLKD--HSFHNEFEISEMLRRFGWIVPAYTMPADAQHIT 414
Cdd:TIGR01788 322 EGYRKIMQNSLDVARYLAEEIAKLGPFEIISDGSGIPLVAFKLKDdaDPGYTLYDLSHRLRERGWIVPAYTLPKNAEDIV 401
                         410       420       430
                  ....*....|....*....|....*....|
gi 1184960    415 VLRVVIREDFSRTLAERLVADISKVLHELD 444
Cdd:TIGR01788 402 VMRIVVREGFSRDLAELLIEDIEAALAYLE 431
Pyridoxal_deC pfam00282
Pyridoxal-dependent decarboxylase conserved domain;
33-380 1.03e-125

Pyridoxal-dependent decarboxylase conserved domain;


Pssm-ID: 395219  Cd Length: 373  Bit Score: 370.98  E-value: 1.03e-125
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184960     33 ENSIP-KDAAYQIIKD-ELMLDGNPRLNLASFVTTWMEPECDKLIM--------------DSINKNYVDMDEYPVTTELQ 96
Cdd:pfam00282   2 GYLKPlLPLAAPIIPEpELQIDGDIRRNLMPGVTTWHSPHFHAYMPtgnsypsllgdmltDAINCNGFTWESSPACTELE 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184960     97 NRCVNIIARLFNAPLEESET-AVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKP------YDKPNIVTGANVQVCWEKF 169
Cdd:pfam00282  82 NVVMNWLGEMLGLPAEFLGQeGGGVLQPGSSESNLLALLAARTKWIKRMKAAGKPadssgiLAKLVAYTSDQAHSSIEKA 161
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184960    170 ARYFEVELKEVNLSEG--YYVMDPDKAAEMVDENTI---CVAAILGSTLNGEFEDVKRLNDLLVKkneetgWNTPIHVDA 244
Cdd:pfam00282 162 ALYGGVKLREIPSDDNgkMRGMDLEKAIEEDKENGLipfFVVATLGTTGSGAFDDLQELGDICAK------HNLWLHVDA 235
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184960    245 ASGG--FIAPFIYPeleWDFRLPLVKSINVSGHKYGLVYAGIGWVVWRAAEDLPEELIFHINYLG-----ADQPTFTLNF 317
Cdd:pfam00282 236 AYGGsaFICPEFRH---WLFGIERADSITFNPHKWMLVLLDCSAVWVKDKEALQQAFQFNPLYLGhtdsaYDTGHKQIPL 312
                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1184960    318 SKGssQIIAQYYQLIR-LGFEGYKNVMENCIENMVVLKEGIEKTERFNIVSKdQGVPVVAFSLK 380
Cdd:pfam00282 313 SRR--FRILKLWFVIRsLGVEGLQNQIRRHVELAQYLEALIRKDGRFEICAE-VGLGLVCFRLK 373
DOPA_deC_like cd06450
DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent ...
58-438 4.76e-105

DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.


Pssm-ID: 99743 [Multi-domain]  Cd Length: 345  Bit Score: 317.22  E-value: 4.76e-105
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184960   58 NLASFVTTwMEPECDKLIMDSINKNYVDM--DEYPVTTELQNRCVNIIARLFNAPleeSETAVGVGTVGSSEAIMLAGLA 135
Cdd:cd06450   1 FLAGFVTT-MDPPALLLEMLTSAKNAIDFtwDESPAATEMEAEVVNWLAKLFGLP---SEDADGVFTSGGSESNLLALLA 76
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184960  136 FKRKWQNKRKA-EGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVNLSEGYyVMDPDKAAEMVDE------NTICVAAI 208
Cdd:cd06450  77 ARDRARKRLKAgGGRGIDKLVIVCSDQAHVSVEKAAAYLDVKVRLVPVDEDG-RMDPEALEAAIDEdkaeglNPIMVVAT 155
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184960  209 LGSTLNGEFEDVKRLNDLLVKKNeetgwnTPIHVDAASGGFIAPFIYPELeWDFRLPLVKSINVSGHKYGLVYAGIGWVV 288
Cdd:cd06450 156 AGTTDTGAIDPLEEIADLAEKYD------LWLHVDAAYGGFLLPFPEPRH-LDFGIERVDSISVDPHKYGLVPLGCSAVL 228
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184960  289 WRAAedlpeelifhinylgadqptftlnfskgssqiiAQYYQLIRLGFEGYKNVMENCIENMVVLKEGIEKTERFNIVSK 368
Cdd:cd06450 229 VRAL---------------------------------KLWATLRRFGRDGYGEHIDRIVDLAKYLAELIRADPGFELLGE 275
                       330       340       350       360       370       380       390
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1184960  369 DQgVPVVAFSLKDHSFHNE--FEISEMLR-RFGWIVPAYTMPadaqHITVLRVVIREDF-SRTLAERLVADISK 438
Cdd:cd06450 276 PN-LSLVCFRLKPSVKLDElnYDLSDRLNeRGGWHVPATTLG----GPNVLRFVVTNPLtTRDDADALLEDIER 344
GadA COG0076
Glutamate or tyrosine decarboxylase or a related PLP-dependent protein [Amino acid transport ...
28-442 3.05e-98

Glutamate or tyrosine decarboxylase or a related PLP-dependent protein [Amino acid transport and metabolism]; Glutamate or tyrosine decarboxylase or a related PLP-dependent protein is part of the Pathway/BioSystem: Pantothenate/CoA biosynthesis


Pssm-ID: 439846 [Multi-domain]  Cd Length: 460  Bit Score: 303.68  E-value: 3.05e-98
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184960   28 KYEIGENSIPKDAAYQIIKD---ELMLDGNPRLNLAsFVT--TWMEPECDKLIMDSINKNYVDMDEYPVTTELQNRCVNI 102
Cdd:COG0076  37 DEPLPEEGLPPEEALAELEDlvlPGSVDWNHPRFLA-FVTggTTPAALAADLLASALNQNMGDWDTSPAATELEREVVRW 115
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184960  103 IARLFNAPleesETAVGVGTVGSSEAIMLAGLAFKRKWQNKR-KAEG-KPYDKPNIVTGANVQVCWEKFARYFEVE---L 177
Cdd:COG0076 116 LADLLGLP----EGAGGVFTSGGTEANLLALLAARDRALARRvRAEGlPGAPRPRIVVSEEAHSSVDKAARLLGLGrdaL 191
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184960  178 KEVNLSEGYyVMDPDKAAEMVDE------NTICVAAILGSTLNGEFEDVKRLNDLLvkknEETGWntPIHVDAASGGFIA 251
Cdd:COG0076 192 RKVPVDEDG-RMDPDALEAAIDEdraaglNPIAVVATAGTTNTGAIDPLAEIADIA----REHGL--WLHVDAAYGGFAL 264
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184960  252 PfiYPELEWDF-RLPLVKSINVSGHKYGLVYAGIGWVVWRAAEDLPEELIFHINYLGA------DQPTFTLNFSKgSSQI 324
Cdd:COG0076 265 P--SPELRHLLdGIERADSITVDPHKWLYVPYGCGAVLVRDPELLREAFSFHASYLGPaddgvpNLGDYTLELSR-RFRA 341
                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184960  325 IAQYYQLIRLGFEGYKNVMENCIENMVVLKEGIEKTERFNIVSKDQGvPVVAFSLKDHSFHNE----FEISEMLRRFGwi 400
Cdd:COG0076 342 LKLWATLRALGREGYRELIERCIDLARYLAEGIAALPGFELLAPPEL-NIVCFRYKPAGLDEEdalnYALRDRLRARG-- 418
                       410       420       430       440
                ....*....|....*....|....*....|....*....|...
gi 1184960  401 vPAYTMPADAQHITVLRVVIREDFSRT-LAERLVADISKVLHE 442
Cdd:COG0076 419 -RAFLSPTKLDGRVVLRLVVLNPRTTEdDVDALLDDLREAAAE 460
tyr_de_CO2_Arch TIGR03812
tyrosine decarboxylase MnfA; Members of this protein family are the archaeal form, MnfA, of ...
79-439 1.09e-41

tyrosine decarboxylase MnfA; Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]


Pssm-ID: 274796  Cd Length: 373  Bit Score: 152.89  E-value: 1.09e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184960     79 INKNYVDMDEYPVTTELQNRCVNIIARLFNAPleeseTAVGVGTVGSSEAIMLAGLAFKRKWQNKRKaegkpydKPNIVT 158
Cdd:TIGR03812  44 IETNLGDPGLFPGTKKIEEEVVGSLGNLLHLP-----DAYGYIVSGGTEANIQAVRAAKNLAREEKR-------TPNIIV 111
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184960    159 GANVQVCWEKFARYFEVELKEVNLSEgYYVMDPDKAAEMVDENTICVAAILGSTLNGEFEDVKRLNDLlVKKNeetgwNT 238
Cdd:TIGR03812 112 PESAHFSFEKAAEMLGLELRYAPLDE-DYTVDVKDVEDLIDDNTIGIVGIAGTTELGQIDDIEELSKI-ALEN-----GI 184
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184960    239 PIHVDAASGGFIAPFI---YPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVWRAAEDLpEELIFHINYLgADQPTFTL 315
Cdd:TIGR03812 185 YLHVDAAFGGFVIPFLkkgYNPPPFDFSLPGVQSITIDPHKMGLSPIPAGGILFRSKSYL-KYLSVDAPYL-TVKKQATI 262
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184960    316 NFSKGSSQIIAQYYQLIRLGFEGYKNVMENCIENMVVLKEGIEKTERFNIVskDQGVPVVAFSLKDHSfhnefEISEMLR 395
Cdd:TIGR03812 263 TGTRSGASAAATYAVIKYLGREGYRKIVAECMENTRYLVEELKKIGFEPVI--EPVLNIVAFEVDDPE-----EVRKKLR 335
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....
gi 1184960    396 RFGWIVPAytmpadAQHITVLRVVIREDFSRTLAERLVADISKV 439
Cdd:TIGR03812 336 DRGWYVSV------TRCPKALRIVVMPHVTREHIEEFLEDLKEI 373
PRK02769 PRK02769
histidine decarboxylase; Provisional
70-349 1.65e-12

histidine decarboxylase; Provisional


Pssm-ID: 235068 [Multi-domain]  Cd Length: 380  Bit Score: 68.92  E-value: 1.65e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184960    70 ECDKLIMDSINK--NYVDMDEYPVTTELQNRCV-NIIARLFNAPLEESEtavGVGTVGSSEAIM----LAGLAFkrkwqn 142
Cdd:PRK02769  38 ALKRFFSFSINNcgDPYSKSNYPLNSFDFERDVmNFFAELFKIPFNESW---GYITNGGTEGNLygcyLARELF------ 108
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184960   143 krkaegkpydkPN--IVTGANVQVCWEKFARYFEVELKEVN-LSEGYyvMDPDKAAEMVDENT----ICVAAIlGSTLNG 215
Cdd:PRK02769 109 -----------PDgtLYYSKDTHYSVSKIARLLRIKSRVITsLPNGE--IDYDDLISKIKENKnqppIIFANI-GTTMTG 174
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184960   216 EFEDVKRLNDLLVKKNEEtgwNTPIHVDAASGGFIAPFIYPELEWDFRLPlVKSINVSGHKY-------GLVYAGIGWVv 288
Cdd:PRK02769 175 AIDNIKEIQEILKKIGID---DYYIHADAALSGMILPFVNNPPPFSFADG-IDSIAISGHKFigspmpcGIVLAKKKYV- 249
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1184960   289 wraaedlpEELIFHINYLGA-DQptfTLNFSKGSSQIIAQYYQLIRLGFEGYKNVMENCIEN 349
Cdd:PRK02769 250 --------ERISVDVDYIGSrDQ---TISGSRNGHTALLLWAAIRSLGSKGLRQRVQHCLDM 300
PLN03032 PLN03032
serine decarboxylase; Provisional
168-358 1.09e-06

serine decarboxylase; Provisional


Pssm-ID: 166673 [Multi-domain]  Cd Length: 374  Bit Score: 50.59  E-value: 1.09e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184960   168 KFARYFEVELKEVN---LSEGYYVMDPDKAAEMVDENTICVAAIlGSTLNGEFEDVkrlnDLLVKKNEETGWNTP---IH 241
Cdd:PLN03032 126 KAARMYRMEAVKVPtlpSGEIDYDDLERALAKNRDKPAILNVNI-GTTVKGAVDDL----DRILRILKELGYTEDrfyIH 200
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184960   242 VDAASGGFIAPFIYPELEWDFRLPlVKSINVSGHKYGLVYAGIGWVVWRAAEdlPEELIFHINYLGADQPTftLNFSKGS 321
Cdd:PLN03032 201 CDGALFGLMMPFVSRAPEVTFRKP-IGSVSVSGHKFLGCPMPCGVALTRKKH--VKALSQNVEYLNSRDAT--IMGSRNG 275
                        170       180       190
                 ....*....|....*....|....*....|....*..
gi 1184960   322 SQIIAQYYQLIRLGFEGYKNVMENCIENMVVLKEGIE 358
Cdd:PLN03032 276 HAPLYLWYTLRRKGYRGIKRDVQHCMRNAHYLKDRLT 312
PLN02263 PLN02263
serine decarboxylase
209-355 1.13e-06

serine decarboxylase


Pssm-ID: 177904 [Multi-domain]  Cd Length: 470  Bit Score: 50.97  E-value: 1.13e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184960   209 LGSTLNGEFEDVkrlnDLLVKKNEETGWNTP---IHVDAASGGFIAPFIYPELEWDFRLPlVKSINVSGHKYGLVYAGIG 285
Cdd:PLN02263 236 IGTTVKGAVDDL----DLVIKTLEECGFSQDrfyIHCDGALFGLMMPFVKRAPKVTFKKP-IGSVSVSGHKFVGCPMPCG 310
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1184960   286 WVVWRaaedlpeelIFHINYLGADQPTF-----TLNFSKGSSQIIAQYYQLIRLGFEGYKNVMENCIENMVVLKE 355
Cdd:PLN02263 311 VQITR---------MEHINVLSSNVEYLasrdaTIMGSRNGHAPIFLWYTLNRKGYRGFQKEVQKCLRNAHYLKD 376
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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