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Conserved domains on  [gi|3820500|gb|AAC69612|]
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neuroglycan C [Homo sapiens]

Protein Classification

Chon_Sulph_att and Neural_ProG_Cyt domain-containing protein( domain architecture ID 12071258)

Chon_Sulph_att and Neural_ProG_Cyt domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Chon_Sulph_att pfam06566
Chondroitin sulphate attachment domain; This family represents the chondroitin sulphate ...
 34-272 8.39e-138

Chondroitin sulphate attachment domain; This family represents the chondroitin sulphate attachment domain of vertebrate neural transmembrane proteoglycans that contain EGF modules. Evidence has been accumulated to support the idea that neural proteoglycans are involved in various cellular events including mitogenesis, differentiation, axonal outgrowth and synaptogenesis. This domain contains several potential sites of chondroitin sulphate attachment, as well as potential sites of N-linked glycosylation.


:

Pssm-ID: 368978 [Multi-domain]  Cd Length: 249  Bit Score: 398.93  E-value: 8.39e-138
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3820500     34 REAGSAVEAEELVKGSPAWEPPANDTREeAGPPAAGEDEASWTAPGGELA------GPEEVLQESAAVTGTAWLEADSPG 107
Cdd:pfam06566   1 REAGSAAEAEETVKSGLAWEPRANDTRE-AGLPAAGEDETSWTAPGPELGavgpgvGPEEVLEASAAVTGTAWLEADSPG 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3820500    108 LGGVTAEAGSGDAQALPATLQAPHEVLGQSIMPPAIPEATEASGPPSPTPGDKLSPASELPKESPLEVWLNLGGSTPDPQ 187
Cdd:pfam06566  80 LGGVTAEAGSGDAQALPATLQAPDEALGQSNMPPATPEATEASTPPSPTPGDKPSPDPELPKESPLEVWLNLGGSTPDPQ 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3820500    188 VPELTYPFQGTLEPQPASDIIDIDYFEGLDGEGRGADLGSFPGSPGTSENHPDTEGETPSWSLLDLYDDFTPFDESDFYP 267
Cdd:pfam06566 160 GPEPTYPFQGTLEPQPASDIIDIDYFEGLDGEGRGADLGSFPGSPGTSEHHPDTGGETPSWSLLDLYDDFTPFDESDFYP 239


                  ....*
gi 3820500    268 TTSFY 272
Cdd:pfam06566 240 TTSFY 244
Neural_ProG_Cyt super family cl05864
Neural chondroitin sulphate proteoglycan cytoplasmic domain; This family represents the ...
 447-538 4.65e-52

Neural chondroitin sulphate proteoglycan cytoplasmic domain; This family represents the C-terminal cytoplasmic domain of vertebrate neural chondroitin sulphate proteoglycans that contain EGF modules. Evidence has been accumulated to support the idea that neural proteoglycans are involved in various cellular events including mitogenesis, differentiation, axonal outgrowth and synaptogenesis. This domain contains a number of potential sites of phosphorylation by protein kinase C.


The actual alignment was detected with superfamily member pfam06567:

Pssm-ID: 461949  Cd Length: 120  Bit Score: 173.40  E-value: 4.65e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3820500    447 LYLLKTENTKLRRTNKFRTPSELHNDNFSLSTIAEGSHPN--------------------------DDPSAPHKIQEVLK 500
Cdd:pfam06567   1 LHVLKTENTKLRKTSKYRPPSEQHNDNFSLSTIAEGSHPNvrklcdtptnlpharalayydnivcqDDPSAPHKIEEPLK 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 3820500    501 SCLKEEESFNIQNSMSPKLEGGK--GDQADLDVNCLQNNL 538
Cdd:pfam06567  81 SPPKEDESLNIQNSMTPKLENGKpaGEQNDLEVNSLQNNL 120
 
Name Accession Description Interval E-value
Chon_Sulph_att pfam06566
Chondroitin sulphate attachment domain; This family represents the chondroitin sulphate ...
 34-272 8.39e-138

Chondroitin sulphate attachment domain; This family represents the chondroitin sulphate attachment domain of vertebrate neural transmembrane proteoglycans that contain EGF modules. Evidence has been accumulated to support the idea that neural proteoglycans are involved in various cellular events including mitogenesis, differentiation, axonal outgrowth and synaptogenesis. This domain contains several potential sites of chondroitin sulphate attachment, as well as potential sites of N-linked glycosylation.


Pssm-ID: 368978 [Multi-domain]  Cd Length: 249  Bit Score: 398.93  E-value: 8.39e-138
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3820500     34 REAGSAVEAEELVKGSPAWEPPANDTREeAGPPAAGEDEASWTAPGGELA------GPEEVLQESAAVTGTAWLEADSPG 107
Cdd:pfam06566   1 REAGSAAEAEETVKSGLAWEPRANDTRE-AGLPAAGEDETSWTAPGPELGavgpgvGPEEVLEASAAVTGTAWLEADSPG 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3820500    108 LGGVTAEAGSGDAQALPATLQAPHEVLGQSIMPPAIPEATEASGPPSPTPGDKLSPASELPKESPLEVWLNLGGSTPDPQ 187
Cdd:pfam06566  80 LGGVTAEAGSGDAQALPATLQAPDEALGQSNMPPATPEATEASTPPSPTPGDKPSPDPELPKESPLEVWLNLGGSTPDPQ 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3820500    188 VPELTYPFQGTLEPQPASDIIDIDYFEGLDGEGRGADLGSFPGSPGTSENHPDTEGETPSWSLLDLYDDFTPFDESDFYP 267
Cdd:pfam06566 160 GPEPTYPFQGTLEPQPASDIIDIDYFEGLDGEGRGADLGSFPGSPGTSEHHPDTGGETPSWSLLDLYDDFTPFDESDFYP 239


                  ....*
gi 3820500    268 TTSFY 272
Cdd:pfam06566 240 TTSFY 244
Neural_ProG_Cyt pfam06567
Neural chondroitin sulphate proteoglycan cytoplasmic domain; This family represents the ...
 447-538 4.65e-52

Neural chondroitin sulphate proteoglycan cytoplasmic domain; This family represents the C-terminal cytoplasmic domain of vertebrate neural chondroitin sulphate proteoglycans that contain EGF modules. Evidence has been accumulated to support the idea that neural proteoglycans are involved in various cellular events including mitogenesis, differentiation, axonal outgrowth and synaptogenesis. This domain contains a number of potential sites of phosphorylation by protein kinase C.


Pssm-ID: 461949  Cd Length: 120  Bit Score: 173.40  E-value: 4.65e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3820500    447 LYLLKTENTKLRRTNKFRTPSELHNDNFSLSTIAEGSHPN--------------------------DDPSAPHKIQEVLK 500
Cdd:pfam06567   1 LHVLKTENTKLRKTSKYRPPSEQHNDNFSLSTIAEGSHPNvrklcdtptnlpharalayydnivcqDDPSAPHKIEEPLK 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 3820500    501 SCLKEEESFNIQNSMSPKLEGGK--GDQADLDVNCLQNNL 538
Cdd:pfam06567  81 SPPKEDESLNIQNSMTPKLENGKpaGEQNDLEVNSLQNNL 120
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
21-167 8.71e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 42.14  E-value: 8.71e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3820500    21 GAALVLASGAVPA--REAGSAVEAEELVKGSPAWEPPANDTREEAGPPAAGEDEASWTApGGELAGPEEVLQESAAVTGT 98
Cdd:PRK07003 370 GGVPARVAGAVPApgARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPA-APAPPATADRGDDAADGDAP 448

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 3820500    99 AWLEADSPglggVTAEAGSGDAQALPATLQAPHEVLGQSIMPPAIPEATEASGPPSPTPGDKLSPASEL 167
Cdd:PRK07003 449 VPAKANAR----ASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAP 513
 
Name Accession Description Interval E-value
Chon_Sulph_att pfam06566
Chondroitin sulphate attachment domain; This family represents the chondroitin sulphate ...
 34-272 8.39e-138

Chondroitin sulphate attachment domain; This family represents the chondroitin sulphate attachment domain of vertebrate neural transmembrane proteoglycans that contain EGF modules. Evidence has been accumulated to support the idea that neural proteoglycans are involved in various cellular events including mitogenesis, differentiation, axonal outgrowth and synaptogenesis. This domain contains several potential sites of chondroitin sulphate attachment, as well as potential sites of N-linked glycosylation.


Pssm-ID: 368978 [Multi-domain]  Cd Length: 249  Bit Score: 398.93  E-value: 8.39e-138
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3820500     34 REAGSAVEAEELVKGSPAWEPPANDTREeAGPPAAGEDEASWTAPGGELA------GPEEVLQESAAVTGTAWLEADSPG 107
Cdd:pfam06566   1 REAGSAAEAEETVKSGLAWEPRANDTRE-AGLPAAGEDETSWTAPGPELGavgpgvGPEEVLEASAAVTGTAWLEADSPG 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3820500    108 LGGVTAEAGSGDAQALPATLQAPHEVLGQSIMPPAIPEATEASGPPSPTPGDKLSPASELPKESPLEVWLNLGGSTPDPQ 187
Cdd:pfam06566  80 LGGVTAEAGSGDAQALPATLQAPDEALGQSNMPPATPEATEASTPPSPTPGDKPSPDPELPKESPLEVWLNLGGSTPDPQ 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3820500    188 VPELTYPFQGTLEPQPASDIIDIDYFEGLDGEGRGADLGSFPGSPGTSENHPDTEGETPSWSLLDLYDDFTPFDESDFYP 267
Cdd:pfam06566 160 GPEPTYPFQGTLEPQPASDIIDIDYFEGLDGEGRGADLGSFPGSPGTSEHHPDTGGETPSWSLLDLYDDFTPFDESDFYP 239


                  ....*
gi 3820500    268 TTSFY 272
Cdd:pfam06566 240 TTSFY 244
Neural_ProG_Cyt pfam06567
Neural chondroitin sulphate proteoglycan cytoplasmic domain; This family represents the ...
 447-538 4.65e-52

Neural chondroitin sulphate proteoglycan cytoplasmic domain; This family represents the C-terminal cytoplasmic domain of vertebrate neural chondroitin sulphate proteoglycans that contain EGF modules. Evidence has been accumulated to support the idea that neural proteoglycans are involved in various cellular events including mitogenesis, differentiation, axonal outgrowth and synaptogenesis. This domain contains a number of potential sites of phosphorylation by protein kinase C.


Pssm-ID: 461949  Cd Length: 120  Bit Score: 173.40  E-value: 4.65e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3820500    447 LYLLKTENTKLRRTNKFRTPSELHNDNFSLSTIAEGSHPN--------------------------DDPSAPHKIQEVLK 500
Cdd:pfam06567   1 LHVLKTENTKLRKTSKYRPPSEQHNDNFSLSTIAEGSHPNvrklcdtptnlpharalayydnivcqDDPSAPHKIEEPLK 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 3820500    501 SCLKEEESFNIQNSMSPKLEGGK--GDQADLDVNCLQNNL 538
Cdd:pfam06567  81 SPPKEDESLNIQNSMTPKLENGKpaGEQNDLEVNSLQNNL 120
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
21-167 8.71e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 42.14  E-value: 8.71e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3820500    21 GAALVLASGAVPA--REAGSAVEAEELVKGSPAWEPPANDTREEAGPPAAGEDEASWTApGGELAGPEEVLQESAAVTGT 98
Cdd:PRK07003 370 GGVPARVAGAVPApgARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPA-APAPPATADRGDDAADGDAP 448

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 3820500    99 AWLEADSPglggVTAEAGSGDAQALPATLQAPHEVLGQSIMPPAIPEATEASGPPSPTPGDKLSPASEL 167
Cdd:PRK07003 449 VPAKANAR----ASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAP 513
PHA03247 PHA03247
large tegument protein UL36; Provisional
 27-206 1.20e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 41.85  E-value: 1.20e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3820500     27 ASGAVPAREAGSAVEAEELVKGSPAWEPPANDTREEAGPPAAgedEASWTAPGGELAGPEEVLQESAAVTGTAWleADSP 106
Cdd:PHA03247 2776 AAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAA---LPPAASPAGPLPPPTSAQPTAPPPPPGPP--PPSL 2850

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3820500    107 GLGGVTAEAGS----GDAQALPATLQAPHEVLGQSIMPPAIPEATEASGPPSPTPGDKLSPASELPKESPLEVWLNLGGS 182
Cdd:PHA03247 2851 PLGGSVAPGGDvrrrPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQ 2930

                         170       180
                  ....*....|....*....|....
gi 3820500    183 TPDPQVPELTYPFQGTLEPQPASD 206
Cdd:PHA03247 2931 PPPPPPPRPQPPLAPTTDPAGAGE 2954
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 16-176 1.51e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 41.51  E-value: 1.51e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3820500    16 LLLFLGAALVLAsGAVPAREAGSAVEAEELVKGSP----AWEPPANDTREEAGPPAAGEDEASWTAPGG----ELAGPEE 87
Cdd:PRK07764 353 LLLELLCARMLL-PSASDDERGLLARLERLERRLGvaggAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAaapaPAAAPQP 431

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3820500    88 VLQESAAVTGTAWLEADSPGLGGVTAEAGSGDAQALPATLQAPHEVLGQSIMPPAIPEATEASGPPSPTPGdklsPASEL 167
Cdd:PRK07764 432 APAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAA----PAGAD 507


                 ....*....
gi 3820500   168 PKESPLEVW 176
Cdd:PRK07764 508 DAATLRERW 516
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 21-252 2.12e-03

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 40.92  E-value: 2.12e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3820500     21 GAALVLASGAVPAREAGSAVEAEelvkGSPAWEPPAND----------TREEAGPPAAGEDEASwTAPGGELAGPEEVLQ 90
Cdd:PHA03307   50 LAAVTVVAGAAACDRFEPPTGPP----PGPGTEAPANEsrstptwslsTLAPASPAREGSPTPP-GPSSPDPPPPTPPPA 124

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3820500     91 ESAAVTGTAWLEADSPGLGGVTAEAGSGDAQALPATLQAPHEVLGQSIMPPA--IPEATEASGPPSPTPGDKLSPASELP 168
Cdd:PHA03307  125 SPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLssPEETARAPSSPPAEPPPSTPPAAASP 204

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3820500    169 KESPLEVWLNLGGSTPDPQVPE-------------LTYPFQGTLE--------PQPASDIIDIDYFEGLDGEGRGADLGS 227
Cdd:PHA03307  205 RPPRRSSPISASASSPAPAPGRsaaddagasssdsSSSESSGCGWgpenecplPRPAPITLPTRIWEASGWNGPSSRPGP 284

                         250       260
                  ....*....|....*....|....*
gi 3820500    228 FPGSPGTSENHPDTEGETPSWSLLD 252
Cdd:PHA03307  285 ASSSSSPRERSPSPSPSSPGSGPAP 309
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 25-206 4.04e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 39.97  E-value: 4.04e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3820500    25 VLASGAVPAREAGSAVEAEELvKGSPAWEPPANDTREE------AGPPAAGEDEASWTAPGGELAGPEEVLQESAAVTGT 98
Cdd:PRK07764 587 VVGPAPGAAGGEGPPAPASSG-PPEEAARPAAPAAPAApaapapAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDG 665

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3820500    99 AWLEADSPGLGGVTAE----------AGSGDAQALPATLQAPHEVLGQSIMPPAIPEATEASGPPSPTPGDKLSPASELP 168
Cdd:PRK07764 666 GDGWPAKAGGAAPAAPppapapaapaAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEP 745

                        170       180       190
                 ....*....|....*....|....*....|....*...
gi 3820500   169 KESPLEVWlnLGGSTPDPQVPELTYPFQGTLEPQPASD 206
Cdd:PRK07764 746 DDPPDPAG--APAQPPPPPAPAPAAAPAAAPPPSPPSE 781
PRK13108 PRK13108
prolipoprotein diacylglyceryl transferase; Reviewed
 17-190 4.10e-03

prolipoprotein diacylglyceryl transferase; Reviewed


Pssm-ID: 237284 [Multi-domain]  Cd Length: 460  Bit Score: 39.58  E-value: 4.10e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3820500    17 LLFLGAALVLASgAVPAREAGSAVEAEELVKGSPAWEPPAndtrEEAGPPAAGEDEASWTAPGGELAGPEEVLQESAA-- 94
Cdd:PRK13108 263 FVFIGAVVYIIL-APKGREAPGALRGSEYVVDEALEREPA----ELAAAAVASAASAVGPVGPGEPNQPDDVAEAVKAev 337

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3820500    95 --VTGTAWLEADSPGLGGVTAEAGSGDAQALPATLQ-APHEVLGQSIMPPAIPEATEASGPPSPT---PGDKLSPASELP 168
Cdd:PRK13108 338 aeVTDEVAAESVVQVADRDGESTPAVEETSEADIEReQPGDLAGQAPAAHQVDAEAASAAPEEPAalaSEAHDETEPEVP 417

                        170       180
                 ....*....|....*....|....*...
gi 3820500   169 KESPLEV------WLNLGGSTPDPQVPE 190
Cdd:PRK13108 418 EKAAPIPdpakpdELAVAGPGDDPAEPD 445
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 27-191 4.68e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 39.97  E-value: 4.68e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3820500    27 ASGAVPAREAGSAVEAEELVKGSPAWEPPANDTREEAGPPAAGEDEASWT------APGGELAGPEEVLQESAAVTGTAW 100
Cdd:PRK07764 621 PAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPakaggaAPAAPPPAPAPAAPAAPAGAAPAQ 700

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3820500   101 LEADSP-GLGGVTAEAGSGDAQALPATLQAPHEVLGQSIMPPAIPEATEASGPPSPTPGDKLSPASELPKESPLEVwlnl 179
Cdd:PRK07764 701 PAPAPAaTPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPP---- 776

                        170
                 ....*....|..
gi 3820500   180 ggSTPDPQVPEL 191
Cdd:PRK07764 777 --SPPSEEEEMA 786
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
21-168 6.97e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 39.09  E-value: 6.97e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3820500    21 GAALVLASGAVPAREAGSAVEAeelVKGSPAWEPPANDTREEAGPPA-AGEDEASWTAPGGELAGPEEVLQESAAvtgTA 99
Cdd:PRK12323 447 APAPAPAPAAAPAAAARPAAAG---PRPVAAAAAAAPARAAPAAAPApADDDPPPWEELPPEFASPAPAQPDAAP---AG 520

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 3820500   100 WLEADSPGLGGVTAEAGSGDAQALPATLQAPHEVLGQSIMPPAIPEATEASGPPSPTPGDKLSPASELP 168
Cdd:PRK12323 521 WVAESIPDPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLPDMFDGDWPALAARLP 589
PHA03247 PHA03247
large tegument protein UL36; Provisional
 23-203 7.83e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 39.15  E-value: 7.83e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3820500     23 ALVLASGAVPAREAGSAVEAeelvkgSPAWEPPANDTREEAGP-----PAAGEDEASWTAPGGELAGPEEVLQESAAVTG 97
Cdd:PHA03247 2718 ATPLPPGPAAARQASPALPA------APAPPAVPAGPATPGGParparPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASL 2791

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3820500     98 TAWLEA------DSPGLGGVTAEAGSGDAQALPATLQAPhevlgQSIMPPAIPEATEASGPPSPTPGDKLSPASELPKES 171
Cdd:PHA03247 2792 SESRESlpspwdPADPPAAVLAPAAALPPAASPAGPLPP-----PTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRP 2866

                         170       180       190
                  ....*....|....*....|....*....|...
gi 3820500    172 PLEVWLNLGGSTPDPQVPELTYP-FQGTLEPQP 203
Cdd:PHA03247 2867 PSRSPAAKPAAPARPPVRRLARPaVSRSTESFA 2899
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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