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Conserved domains on  [gi|1788504|gb|AAC75239|]
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putative oligopeptide ABC transporter membrane subunit YejB [Escherichia coli str. K-12 substr. MG1655]

Protein Classification

microcin C ABC transporter permease YejB( domain architecture ID 10794138)

microcin C ABC transporter permease YejB is the transmembrane (TM) subunit of the ABC transporter YejABEF that has been shown in Brucella melitensis to be required for resistance to antimicrobial peptides and virulence

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK15133 PRK15133
microcin C ABC transporter permease YejB; Provisional
 1-364 0e+00

microcin C ABC transporter permease YejB; Provisional


:

Pssm-ID: 185087 [Multi-domain]  Cd Length: 364  Bit Score: 732.32  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788504     1 MGAYLIRRLLLVIPTLWAIITINFFIVQIAPGGPVDQAIAAIEFGNAGVLPGAGGEGVRASHAQTGVGNISDSNYRGGRG 80
Cdd:PRK15133   1 MGAYLIRRLLLVIPTLWAIITINFFIVQIAPGGPVDQAIAAIEFGQAGGLPGAGGEGVRASHAQTGVGNISDSNYRGGRG 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788504    81 LDPEVIAEITHRYGFDKPIHERYFKMLWDYIRFDFGDSLFRSASVLTLIKDSLPVSITLGLWSTLIIYLVSIPLGIRKAV 160
Cdd:PRK15133  81 LDPEVIAEITHRYGFDKPLHERYFKMLWDYIRFDFGDSLFRSASVLTLIKDSLPVSITLGLWSTLIIYLVSIPLGIRKAV 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788504   161 YNGSRFDVWSSAFIIIGYAIPAFLFAILLIVFFAGGSYFDLFPLRGLVSANFDSLPWYQKITDYLWHITLPVLATVIGGF 240
Cdd:PRK15133 161 RNGSRFDVWSSAFIIIGYAIPAFLFAILLIVFFAGGSYFDLFPLRGLVSANFDSLPWYQKITDYLWHITLPVLATVIGGF 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788504   241 AALTMLTKNSFLDEVRKQYVVTARAKGVSEKNILWKHVFRNAMLLVIAGFPATFISMFFTGSLLIEVMFSLNGLGLLGYE 320
Cdd:PRK15133 241 AALTMLTKNSFLDEIRKQYVVTARAKGVSEKNILWKHVFRNAMLLVIAGFPATFISMFFTGSLLIEVMFSLNGLGLLGYE 320

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....
gi 1788504   321 ATVSRDYPVMFGTLYIFTLIGLLLNIVSDISYTLVDPRIDFEGR 364
Cdd:PRK15133 321 ATVSRDYPVMFGTLYIFTLIGLLLNIVSDISYTLVDPRIDFEGR 364
 
Name Accession Description Interval E-value
PRK15133 PRK15133
microcin C ABC transporter permease YejB; Provisional
 1-364 0e+00

microcin C ABC transporter permease YejB; Provisional


Pssm-ID: 185087 [Multi-domain]  Cd Length: 364  Bit Score: 732.32  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788504     1 MGAYLIRRLLLVIPTLWAIITINFFIVQIAPGGPVDQAIAAIEFGNAGVLPGAGGEGVRASHAQTGVGNISDSNYRGGRG 80
Cdd:PRK15133   1 MGAYLIRRLLLVIPTLWAIITINFFIVQIAPGGPVDQAIAAIEFGQAGGLPGAGGEGVRASHAQTGVGNISDSNYRGGRG 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788504    81 LDPEVIAEITHRYGFDKPIHERYFKMLWDYIRFDFGDSLFRSASVLTLIKDSLPVSITLGLWSTLIIYLVSIPLGIRKAV 160
Cdd:PRK15133  81 LDPEVIAEITHRYGFDKPLHERYFKMLWDYIRFDFGDSLFRSASVLTLIKDSLPVSITLGLWSTLIIYLVSIPLGIRKAV 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788504   161 YNGSRFDVWSSAFIIIGYAIPAFLFAILLIVFFAGGSYFDLFPLRGLVSANFDSLPWYQKITDYLWHITLPVLATVIGGF 240
Cdd:PRK15133 161 RNGSRFDVWSSAFIIIGYAIPAFLFAILLIVFFAGGSYFDLFPLRGLVSANFDSLPWYQKITDYLWHITLPVLATVIGGF 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788504   241 AALTMLTKNSFLDEVRKQYVVTARAKGVSEKNILWKHVFRNAMLLVIAGFPATFISMFFTGSLLIEVMFSLNGLGLLGYE 320
Cdd:PRK15133 241 AALTMLTKNSFLDEIRKQYVVTARAKGVSEKNILWKHVFRNAMLLVIAGFPATFISMFFTGSLLIEVMFSLNGLGLLGYE 320

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....
gi 1788504   321 ATVSRDYPVMFGTLYIFTLIGLLLNIVSDISYTLVDPRIDFEGR 364
Cdd:PRK15133 321 ATVSRDYPVMFGTLYIFTLIGLLLNIVSDISYTLVDPRIDFEGR 364
YejB COG4174
ABC-type microcin C transport system, permease component YejB [Secondary metabolites ...
 1-364 0e+00

ABC-type microcin C transport system, permease component YejB [Secondary metabolites biosynthesis, transport and catabolism];


Pssm-ID: 443333 [Multi-domain]  Cd Length: 363  Bit Score: 682.68  E-value: 0e+00
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788504    1 MGAYLIRRLLLVIPTLWAIITINFFIVQIAPGGPVDQAIAAIEFGNAGVLPGAGGEGVRASHAQTGVGNisdSNYRGGRG 80
Cdd:COG4174   1 MGAYILRRLLLMIPTLLGIMLINFVIVQFAPGGPVEQVIAQLQGTGGGATGRISGGGGDAGGGAAAGGG---SKYRGARG 77

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788504   81 LDPEVIAEITHRYGFDKPIHERYFKMLWDYIRFDFGDSLFRSASVLTLIKDSLPVSITLGLWSTLIIYLVSIPLGIRKAV 160
Cdd:COG4174  78 LDPEFIAELEKQYGFDKPAHERFLLMLKNYLRFDFGESYFRDISVIDLILEKLPVSISLGLWSTLLTYLISIPLGIRKAV 157

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788504  161 YNGSRFDVWSSAFIIIGYAIPAFLFAILLIVFFAGGSYFDLFPLRGLVSANFDSLPWYQKITDYLWHITLPVLATVIGGF 240
Cdd:COG4174 158 RDGSRFDVWTSTVIIVGYAIPGFLFAILLIVLFAGGSYFDWFPLRGLTSDNWDQLSWWGKILDYLWHLTLPVTAMVIGGF 237

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788504  241 AALTMLTKNSFLDEVRKQYVVTARAKGVSEKNILWKHVFRNAMLLVIAGFPATFISMFFTGSLLIEVMFSLNGLGLLGYE 320
Cdd:COG4174 238 ATLTLLTKNSFLDEIRKQYVLTARAKGLSERRVLYGHVFRNAMLIVIAGFPAAFIGAFFTGSLLIETIFSLDGLGLLGFE 317

                       330       340       350       360
                ....*....|....*....|....*....|....*....|....
gi 1788504  321 ATVSRDYPVMFGTLYIFTLIGLLLNIVSDISYTLVDPRIDFEGR 364
Cdd:COG4174 318 AVVNRDYPVVFGTLYIFTLIGLVLKLISDLTYVLVDPRIDFEAR 361
nickel_nikB TIGR02789
nickel ABC transporter, permease subunit NikB; This family consists of the NikB family of ...
 1-359 1.11e-49

nickel ABC transporter, permease subunit NikB; This family consists of the NikB family of nickel ABC transporter permeases. Operons that contain this protein also contain a homologous permease subunit NikC. Nickel is used in cells as part of urease or certain hydrogenases or superoxide dismutases. [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 131836 [Multi-domain]  Cd Length: 314  Bit Score: 169.17  E-value: 1.11e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788504      1 MGAYLIRRLLLVIPTLWAIITINFFIVQIapgGPVDQAIAAIefgnagvlpgaggegvRASHAQTgvgnisdsnyrggrg 80
Cdd:TIGR02789   1 MLNYILRRLLLLIPVVLAASLLAFILIHL---GPSDPAEDYL----------------RLSHIPP--------------- 46

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788504     81 lDPEVIAEITHRYGFDKPIHERYFKMLWDYIRFDFGDSLFRSASVLTLIKDSLPVSITLGLWSTLIIYLVSIPLGIRKAV 160
Cdd:TIGR02789  47 -TDEAIADMRHSLGLDQPLYVQYFHWLWNALHLDFGISYISDRPVLDEIARSLPATLELAGFALVIVVLVSVPLGILAAR 125

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788504    161 YNGSRFDVWSSAFIIIGYAIPAFLFAILLIVFFAggSYFDLFPLRGLVSANfdslpwyqkitdylwHITLPVLATVIGGF 240
Cdd:TIGR02789 126 YRDRLPDHAVRFIIFLGVSIPNFWLAFLLVWGFS--VYLNLLPTNGAGTWQ---------------HLVLPAVTLALMSV 188

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788504    241 AALTMLTKNSFLDEVRKQYVVTARAKGVSEKNILWKHVFRNAMLLVIAGFpATFISMFFTGSLLIEVMFSLNGLGLLGYE 320
Cdd:TIGR02789 189 SIYARLLRASMLDNMQERYVTYARVRGIKERWVIRRHILRNAILPMITAL-GMHIGELLGGTFVIENIFSWPGVGRYAIS 267

                         330       340       350
                  ....*....|....*....|....*....|....*....
gi 1788504    321 ATVSRDYPVMFGTLYIFTLIGLLLNIVSDISYTLVDPRI 359
Cdd:TIGR02789 268 AIFNRDYPVIQCYTLLMGLLFVFCNLIVDLFQALLDPRI 306
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 151-359 7.11e-25

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 99.68  E-value: 7.11e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788504    151 SIPLGIRKAVYNGSRFDVWSSAFIIIGYAIPAFLFAILLIVFFaggsyfdlfplrglvsanfdslpwyqkITDYLWHITL 230
Cdd:pfam00528   1 GIPLGIIAALRRGRRLDRLLRPLIDLLQALPSFVLAILLVVIA---------------------------ILSILGHGIL 53

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788504    231 PVLATVIGGFAALTMLTKNSFLDEVRKQYVVTARAKGVSEKNILWKHVFRNAMLLVIAGFPATFISMfFTGSLLIEVMFS 310
Cdd:pfam00528  54 PAIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGA-LGGAVLLEFLGS 132

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 1788504    311 LNGLGLLGYEATVSRDYPVMFGTLYIFTLIGLLLNIVSDISYTLVDPRI 359
Cdd:pfam00528 133 WPGLGLLLIEAILGYDYPEIQGPVLAAALILLLLNLLVDILQRLLDPRV 181
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 133-350 7.14e-13

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 66.53  E-value: 7.14e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788504  133 LPVSITLGLWSTLIIYLVSIPLGIRKAVYNGsRFDVWSSAFIIIGYAIPAFLFAILLIVFFAGGSYFDLFPlrglvsanf 212
Cdd:cd06261   1 LLNTLLLALIATLLALVLGLLLGIILARKRG-KLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILP--------- 70

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788504  213 dslpwyqkitdylwHITLPVLATVIGGFAALTMLTKNSFLDEVRKQYVVTARAKGVSEKNILWKHVFRNAMLLVIAGFPA 292
Cdd:cd06261  71 --------------GLGLPALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVL 136

                       170       180       190       200       210
                ....*....|....*....|....*....|....*....|....*....|....*...
gi 1788504  293 TFISMFftGSLLIEVMFSLNGLGLLGYEATVSRDYPvmFGTLYIFTLIGLLLNIVSDI 350
Cdd:cd06261 137 AFARAL--GEFALVSFLGGGEAPGPGTGLLLIFAIL--FPGDLGVAAAVALILLLLSL 190
 
Name Accession Description Interval E-value
PRK15133 PRK15133
microcin C ABC transporter permease YejB; Provisional
 1-364 0e+00

microcin C ABC transporter permease YejB; Provisional


Pssm-ID: 185087 [Multi-domain]  Cd Length: 364  Bit Score: 732.32  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788504     1 MGAYLIRRLLLVIPTLWAIITINFFIVQIAPGGPVDQAIAAIEFGNAGVLPGAGGEGVRASHAQTGVGNISDSNYRGGRG 80
Cdd:PRK15133   1 MGAYLIRRLLLVIPTLWAIITINFFIVQIAPGGPVDQAIAAIEFGQAGGLPGAGGEGVRASHAQTGVGNISDSNYRGGRG 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788504    81 LDPEVIAEITHRYGFDKPIHERYFKMLWDYIRFDFGDSLFRSASVLTLIKDSLPVSITLGLWSTLIIYLVSIPLGIRKAV 160
Cdd:PRK15133  81 LDPEVIAEITHRYGFDKPLHERYFKMLWDYIRFDFGDSLFRSASVLTLIKDSLPVSITLGLWSTLIIYLVSIPLGIRKAV 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788504   161 YNGSRFDVWSSAFIIIGYAIPAFLFAILLIVFFAGGSYFDLFPLRGLVSANFDSLPWYQKITDYLWHITLPVLATVIGGF 240
Cdd:PRK15133 161 RNGSRFDVWSSAFIIIGYAIPAFLFAILLIVFFAGGSYFDLFPLRGLVSANFDSLPWYQKITDYLWHITLPVLATVIGGF 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788504   241 AALTMLTKNSFLDEVRKQYVVTARAKGVSEKNILWKHVFRNAMLLVIAGFPATFISMFFTGSLLIEVMFSLNGLGLLGYE 320
Cdd:PRK15133 241 AALTMLTKNSFLDEIRKQYVVTARAKGVSEKNILWKHVFRNAMLLVIAGFPATFISMFFTGSLLIEVMFSLNGLGLLGYE 320

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....
gi 1788504   321 ATVSRDYPVMFGTLYIFTLIGLLLNIVSDISYTLVDPRIDFEGR 364
Cdd:PRK15133 321 ATVSRDYPVMFGTLYIFTLIGLLLNIVSDISYTLVDPRIDFEGR 364
YejB COG4174
ABC-type microcin C transport system, permease component YejB [Secondary metabolites ...
 1-364 0e+00

ABC-type microcin C transport system, permease component YejB [Secondary metabolites biosynthesis, transport and catabolism];


Pssm-ID: 443333 [Multi-domain]  Cd Length: 363  Bit Score: 682.68  E-value: 0e+00
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788504    1 MGAYLIRRLLLVIPTLWAIITINFFIVQIAPGGPVDQAIAAIEFGNAGVLPGAGGEGVRASHAQTGVGNisdSNYRGGRG 80
Cdd:COG4174   1 MGAYILRRLLLMIPTLLGIMLINFVIVQFAPGGPVEQVIAQLQGTGGGATGRISGGGGDAGGGAAAGGG---SKYRGARG 77

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788504   81 LDPEVIAEITHRYGFDKPIHERYFKMLWDYIRFDFGDSLFRSASVLTLIKDSLPVSITLGLWSTLIIYLVSIPLGIRKAV 160
Cdd:COG4174  78 LDPEFIAELEKQYGFDKPAHERFLLMLKNYLRFDFGESYFRDISVIDLILEKLPVSISLGLWSTLLTYLISIPLGIRKAV 157

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788504  161 YNGSRFDVWSSAFIIIGYAIPAFLFAILLIVFFAGGSYFDLFPLRGLVSANFDSLPWYQKITDYLWHITLPVLATVIGGF 240
Cdd:COG4174 158 RDGSRFDVWTSTVIIVGYAIPGFLFAILLIVLFAGGSYFDWFPLRGLTSDNWDQLSWWGKILDYLWHLTLPVTAMVIGGF 237

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788504  241 AALTMLTKNSFLDEVRKQYVVTARAKGVSEKNILWKHVFRNAMLLVIAGFPATFISMFFTGSLLIEVMFSLNGLGLLGYE 320
Cdd:COG4174 238 ATLTLLTKNSFLDEIRKQYVLTARAKGLSERRVLYGHVFRNAMLIVIAGFPAAFIGAFFTGSLLIETIFSLDGLGLLGFE 317

                       330       340       350       360
                ....*....|....*....|....*....|....*....|....
gi 1788504  321 ATVSRDYPVMFGTLYIFTLIGLLLNIVSDISYTLVDPRIDFEGR 364
Cdd:COG4174 318 AVVNRDYPVVFGTLYIFTLIGLVLKLISDLTYVLVDPRIDFEAR 361
DppB COG0601
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
 1-359 4.53e-97

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


Pssm-ID: 440366 [Multi-domain]  Cd Length: 314  Bit Score: 290.82  E-value: 4.53e-97
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788504    1 MGAYLIRRLLLVIPTLWAIITINFFIVQIAPGGPVDQAIaaiefgnagvlpgaggegvrashaqtgvgnisdsnyrgGRG 80
Cdd:COG0601   1 MLRYILRRLLQAIPVLLGVSTLVFLLLRLLPGDPAAALL--------------------------------------GPR 42

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788504   81 LDPEVIAEITHRYGFDKPIHERYFKMLWDYIRFDFGDSLFRSASVLTLIKDSLPVSITLGLWSTLIIYLVSIPLGIRKAV 160
Cdd:COG0601  43 ATPEAIAALRAELGLDQPLLVQYLDWLGGLLRGDLGTSFVYGRPVSDLIAERLPVTLELALLALLLALLIGIPLGILAAL 122

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788504  161 YNGSRFDVWSSAFIIIGYAIPAFLFAILLIVFFAggSYFDLFPLRGLVSanfdslpWYQKITDYLWHITLPVLATVIGGF 240
Cdd:COG0601 123 RRGSWLDRLITVLALLGISIPSFWLGLLLILLFA--VKLGWLPVSGRVS-------PWEDFLDALRHLILPALTLALGSL 193

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788504  241 AALTMLTKNSFLDEVRKQYVVTARAKGVSEKNILWKHVFRNAMLLVIAGFPATFISMfFTGSLLIEVMFSLNGLGLLGYE 320
Cdd:COG0601 194 AGIARLTRSSMLEVLGQDYVRTARAKGLSERRVLLRHALRNALIPVVTVLGLQLGGL-LGGAVVVETVFSWPGLGRLLVD 272

                       330       340       350
                ....*....|....*....|....*....|....*....
gi 1788504  321 ATVSRDYPVMFGTLYIFTLIGLLLNIVSDISYTLVDPRI 359
Cdd:COG0601 273 AILNRDYPVVQGIVLLIAVLVVLVNLLVDLLYALLDPRI 311
nickel_nikB TIGR02789
nickel ABC transporter, permease subunit NikB; This family consists of the NikB family of ...
 1-359 1.11e-49

nickel ABC transporter, permease subunit NikB; This family consists of the NikB family of nickel ABC transporter permeases. Operons that contain this protein also contain a homologous permease subunit NikC. Nickel is used in cells as part of urease or certain hydrogenases or superoxide dismutases. [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 131836 [Multi-domain]  Cd Length: 314  Bit Score: 169.17  E-value: 1.11e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788504      1 MGAYLIRRLLLVIPTLWAIITINFFIVQIapgGPVDQAIAAIefgnagvlpgaggegvRASHAQTgvgnisdsnyrggrg 80
Cdd:TIGR02789   1 MLNYILRRLLLLIPVVLAASLLAFILIHL---GPSDPAEDYL----------------RLSHIPP--------------- 46

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788504     81 lDPEVIAEITHRYGFDKPIHERYFKMLWDYIRFDFGDSLFRSASVLTLIKDSLPVSITLGLWSTLIIYLVSIPLGIRKAV 160
Cdd:TIGR02789  47 -TDEAIADMRHSLGLDQPLYVQYFHWLWNALHLDFGISYISDRPVLDEIARSLPATLELAGFALVIVVLVSVPLGILAAR 125

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788504    161 YNGSRFDVWSSAFIIIGYAIPAFLFAILLIVFFAggSYFDLFPLRGLVSANfdslpwyqkitdylwHITLPVLATVIGGF 240
Cdd:TIGR02789 126 YRDRLPDHAVRFIIFLGVSIPNFWLAFLLVWGFS--VYLNLLPTNGAGTWQ---------------HLVLPAVTLALMSV 188

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788504    241 AALTMLTKNSFLDEVRKQYVVTARAKGVSEKNILWKHVFRNAMLLVIAGFpATFISMFFTGSLLIEVMFSLNGLGLLGYE 320
Cdd:TIGR02789 189 SIYARLLRASMLDNMQERYVTYARVRGIKERWVIRRHILRNAILPMITAL-GMHIGELLGGTFVIENIFSWPGVGRYAIS 267

                         330       340       350
                  ....*....|....*....|....*....|....*....
gi 1788504    321 ATVSRDYPVMFGTLYIFTLIGLLLNIVSDISYTLVDPRI 359
Cdd:TIGR02789 268 AIFNRDYPVIQCYTLLMGLLFVFCNLIVDLFQALLDPRI 306
oppB PRK09471
oligopeptide ABC transporter permease OppB;
1-359 3.22e-41

oligopeptide ABC transporter permease OppB;


Pssm-ID: 181886 [Multi-domain]  Cd Length: 306  Bit Score: 146.75  E-value: 3.22e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788504     1 MGAYLIRRLLLVIPTLWAIITINFFIVQIAPGGPvdqaiaaiefgnagvlpgaggegvrashaqtgvgnisdsnYRGGRG 80
Cdd:PRK09471   1 MLKFILRRCLEAIPTLFILITISFFMMRLAPGSP----------------------------------------FTGERT 40

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788504    81 LDPEVIAEITHRYGFDKPIHERYFKMLWDYIRFDFGDSL-FRSASVLTLIKDSLPVSITLGLWSTLIIYLVSIPLGIRKA 159
Cdd:PRK09471  41 LPPEVMANIEAKYHLNDPIMTQYFSYLKQLAHGDFGPSFkYKDYSVNDLVASSFPVSAKLGAAAFFLAVILGVSAGVIAA 120

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788504   160 VYNGSRFDVWSSAFIIIGYAIPAFLFAILLIVFFAggSYFDLFPLRGlvsanfdslpWYQKITDYlwhITLPVLATVIGG 239
Cdd:PRK09471 121 LKQNTKWDYTVMGFAMTGVVIPSFVVAPLLVLIFA--ITLHWLPGGG----------WNGGALKF---MILPMVALSLAY 185

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788504   240 FAALTMLTKNSFLDEVRKQYVVTARAKGVSEKNILWKHVFRNAMLLVIAGFPATFISMFfTGSLLIEVMFSLNGLGLLGY 319
Cdd:PRK09471 186 IASIARITRGSMIEVLHSNFIRTARAKGLPMRRIILRHALKPALLPVLSYMGPAFVGII-TGSMVIETIFGLPGIGQLFV 264

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|
gi 1788504   320 EATVSRDYPVMFGTLYIFTLIGLLLNIVSDISYTLVDPRI 359
Cdd:PRK09471 265 NGALNRDYSLVLSLTILVGALTILFNAIVDVLYAVIDPKI 304
PRK10914 PRK10914
dipeptide ABC transporter permease DppB;
1-359 5.76e-36

dipeptide ABC transporter permease DppB;


Pssm-ID: 182834 [Multi-domain]  Cd Length: 339  Bit Score: 133.40  E-value: 5.76e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788504     1 MGAYLIRRLLLVIPTLWAIITINFFIVQIAPGGPVdqAIAAiefgnagvlpgaggegvrashaqtgvgnisdsnyrGGRG 80
Cdd:PRK10914   1 MLQFILRRLGLVIPTFIGITLLTFAFVHMIPGDPV--MIMA-----------------------------------GERG 43

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788504    81 LDPEVIAEITHRYGFDKPIHERYFKMLWDYIRFDFGDSLFRSASVLTLIKDSLPVSITLGLWSTLIIYLVSIPLGIRKAV 160
Cdd:PRK10914  44 ISPERHAQLLAELGLDKPMWQQYLHYIWGVMHGDLGISLKSRIPVWDEFVPRFKATLELGVCAMIFAVAVGIPVGVLAAV 123

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788504   161 YNGSRFDVWSSAFIIIGYAIPAFLFAILLIVFFAggSYFDLFPLRGLVSAN--------------FDSLPWYQK--ITDY 224
Cdd:PRK10914 124 KRGSIFDHTAVGLALTGYSMPIFWWGMMLIMLVS--VHWNLTPVSGRVSDMvflddsnpltgfmlIDTAIWGEDgnFIDA 201

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788504   225 LWHITLPVLATVIGGFAALTMLTKNSFLDEVRKQYVVTARAKGVSEKNILWKHVFRNAMLLVIAGFpATFISMFFTGSLL 304
Cdd:PRK10914 202 VAHMILPAIVLGTIPLAVIVRMTRSSMLEVLGEDYIRTARAKGLTRMRVIIVHALRNAMLPVVTVI-GLQVGTLLAGAIL 280

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 1788504   305 IEVMFSLNGLGLLGYEATVSRDYPVMFGTLYIFTLIGLLLNIVSDISYTLVDPRI 359
Cdd:PRK10914 281 TETIFSWPGLGRWLIDALQRRDYPVVQGGVLLVATMIILVNLLVDLLYGVVNPRI 335
PRK10352 PRK10352
nickel transporter permease NikB; Provisional
 1-359 6.27e-34

nickel transporter permease NikB; Provisional


Pssm-ID: 182400 [Multi-domain]  Cd Length: 314  Bit Score: 127.51  E-value: 6.27e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788504     1 MGAYLIRRLLLVIPTLWAIITINFFIVQIAPGGPvdqaiaAIEFGNAGVLPGAggegvrashaqtgvgnisdsnyrggrg 80
Cdd:PRK10352   1 MLRYILRRLLLLIPMLLAASVIIFLMLRLGTGDP------ALDYLRLSNLPPT--------------------------- 47

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788504    81 ldPEVIAEITHRYGFDKPIHERYFKMLWDYIRFDFGDSLFRSASVLTLIKDSLPVSITLGLWSTLIIYLVSIPLGIRKAV 160
Cdd:PRK10352  48 --PEMLASTRTMLGLDQPLYVQYGTWLWKALHLDFGISFATQRPVLDDLLNFLPATLELAGAALVLILLTSVPLGIWAAR 125

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788504   161 YNGSRFDVWSSAFIIIGYAIPAFLFAILLIVFFAggSYFDLFPLRGLVSANfdslpwyqkitdylwHITLPVLATVIGGF 240
Cdd:PRK10352 126 HRDRLPDFAVRFIAFLGVSMPNFWLAFLLVMAFS--VYLQWLPAMGYGGWQ---------------HIILPAVSIAFMSL 188

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788504   241 AALTMLTKNSFLDEVRKQYVVTARAKGVSEKNILWKHVFRNAMLLVIAGFpATFISMFFTGSLLIEVMFSLNGLGLLGYE 320
Cdd:PRK10352 189 AINARLLRASMLEVAGQRHVTWARLRGLSERQVERRHILRNASLPMITAV-GMHIGELIGGTMIIENIFAWPGVGRYAVS 267

                        330       340       350
                 ....*....|....*....|....*....|....*....
gi 1788504   321 ATVSRDYPVMFGTLYIFTLIGLLLNIVSDISYTLVDPRI 359
Cdd:PRK10352 268 AIFNRDYPVIQCFTLMMVVVFVVCNLIVDLLNAALDPRI 306
PRK15081 PRK15081
glutathione ABC transporter permease GsiC; Provisional
 1-362 1.25e-31

glutathione ABC transporter permease GsiC; Provisional


Pssm-ID: 185039 [Multi-domain]  Cd Length: 306  Bit Score: 120.97  E-value: 1.25e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788504     1 MGAYLIRRLLLVIPTLWAIITINFFIVQIAPGGPVDQAiaaiefgnagvlpgAGGEGvrashaqtgvgnisdsnyrggrg 80
Cdd:PRK15081   1 MLNYVIKRLLGLIPTLLIVAVLVFLFVHLLPGDPARLA--------------AGPEA----------------------- 43

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788504    81 lDPEVIAEITHRYGFDKPIHERYFKMLWDYIRFDFGDSLFRSASVLTLIKDSLPVSITLGLWSTLIIYLVSIPLGIRKAV 160
Cdd:PRK15081  44 -DAQVVALVRQQLGLDQPLPHQFWHYISNALQGDFGTSMVSRRPVSEEIASRFMPTLWLTITSMVWAVIFGMAIGIASAV 122

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788504   161 YNGSRFDVWSSAFIIIGYAIPAFLFAILLIVFFAGgsyfdlfplrglvsanfdSLPWYQKITDYLW-HITLPVLATVIGG 239
Cdd:PRK15081 123 WRNRWPDRLGMTLAVSGISFPAFALGMLLMQVFSV------------------ELGWLPTVGADSWqHYILPSLTLGAAV 184

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788504   240 FAALTMLTKNSFLDEVRKQYVVTARAKGVSEKNILWKHVFRNAMLLVIAGFPATFiSMFFTGSLLIEVMFSLNGLGLLGY 319
Cdd:PRK15081 185 AAVMARFTRASFVEVLSEDYMRTARAKGVSETWVVLKHGLRNAMIPVVTMMGLQF-GFLLGGSIVVEKVFNWPGLGRLLV 263

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|...
gi 1788504   320 EATVSRDYPVMFGTLYIFTLIGLLLNIVSDISYTLVDPRIDFE 362
Cdd:PRK15081 264 DSVEMRDYPVIQAEVLLFSLEFILINLVVDVLYAAINPAIRYK 306
SapB COG4168
ABC-type antimicrobial peptide export system, permease component SapB [Defense mechanisms];
103-357 4.05e-29

ABC-type antimicrobial peptide export system, permease component SapB [Defense mechanisms];


Pssm-ID: 443329 [Multi-domain]  Cd Length: 321  Bit Score: 114.55  E-value: 4.05e-29
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788504  103 YFKMLWDYIRFDFGDSLFRSASVLTLIKDSLPVSITLGLWSTLIIYLVSIPLGIRKAVYNGSRFDVWSSAFIIIGYAIPA 182
Cdd:COG4168  44 YLFYLQNLLQGDFGISSINGEPILEQLLTVFPATLELCFLAFLLALLIGIPLGILAGIYRGKWLDKLISSLSLLGFSIPV 123

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788504  183 FLFAILLIVFFAggSYFDLFPLRG---------------LVSANFDSLPWYQK-ITDYLWHITLPVLATVIGGFAALTML 246
Cdd:COG4168 124 FWLALLLILFFS--LNLGWLPVSGrynllyeippvtgfaLIDAWLSDSPYRLKaIQSALQHLILPTLVLAVAPTTEVIRL 201

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788504  247 TKNSFLDEVRKQYVVTARAKGVSEKNILWKHVFRNAMLLVIAGFPATFISMfFTGSLLIEVMFSLNGLGLLGYEATVSRD 326
Cdd:COG4168 202 TRQSTEEVMNQNYIKAAATRGLSRFTIIRRHVLRNALPPIIPQLGLQFSTM-LTLAMITEVVFSWPGIGRWLINAIRQQD 280

                       250       260       270
                ....*....|....*....|....*....|..
gi 1788504  327 YPVM-FGTLYIFTLIgLLLNIVSDISYTLVDP 357
Cdd:COG4168 281 YAAIsAGVIVIGTFV-IIVNILSDILGALLNP 311
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 151-359 7.11e-25

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 99.68  E-value: 7.11e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788504    151 SIPLGIRKAVYNGSRFDVWSSAFIIIGYAIPAFLFAILLIVFFaggsyfdlfplrglvsanfdslpwyqkITDYLWHITL 230
Cdd:pfam00528   1 GIPLGIIAALRRGRRLDRLLRPLIDLLQALPSFVLAILLVVIA---------------------------ILSILGHGIL 53

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788504    231 PVLATVIGGFAALTMLTKNSFLDEVRKQYVVTARAKGVSEKNILWKHVFRNAMLLVIAGFPATFISMfFTGSLLIEVMFS 310
Cdd:pfam00528  54 PAIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGA-LGGAVLLEFLGS 132

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 1788504    311 LNGLGLLGYEATVSRDYPVMFGTLYIFTLIGLLLNIVSDISYTLVDPRI 359
Cdd:pfam00528 133 WPGLGLLLIEAILGYDYPEIQGPVLAAALILLLLNLLVDILQRLLDPRV 181
PRK15110 PRK15110
peptide ABC transporter permease SapB;
103-357 9.36e-19

peptide ABC transporter permease SapB;


Pssm-ID: 185065 [Multi-domain]  Cd Length: 321  Bit Score: 85.90  E-value: 9.36e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788504   103 YFKMLWDYIRFDFGDSLFRSASVLTLIKDSLPVSITLGLWSTLIIYLVSIPLGIRKAVYNGSRFDVWSSAFIIIGYAIPA 182
Cdd:PRK15110  44 WVFWFNGLLHWDFGVSSINGQPISEQLKEVFPATMELCILAFGFALLVGIPVGIIAGVTRHKWQDNLISALALLGFSIPV 123

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788504   183 FLFAILLIVFFA--------GGSYFDLFPLR-----GLVSANFDSLPW-YQKITDYLWHITLPVLATVIGGFAALTMLTK 248
Cdd:PRK15110 124 FWLALLLTLFFSltlgwlpvSGRFDLLYEVKpvtgfALIDAWLSDSPWrDEMIMSAIRHMILPVITLAVAPTTEVIRLMR 203

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788504   249 NSFLDEVRKQYVVTARAKGVSEKNILWKHVFRNAMLLVIAGFPATFISMfFTGSLLIEVMFSLNGLGLLGYEATVSRDYP 328
Cdd:PRK15110 204 ISTIEVYDQNYVKAAATRGLSRFTILRRHVLHNALPPVIPRLGLQFSTM-LTLAMITEMVFSWPGLGRWLINAIRQQDYA 282

                        250       260
                 ....*....|....*....|....*....
gi 1788504   329 VMFGTLYIFTLIGLLLNIVSDISYTLVDP 357
Cdd:PRK15110 283 AISAGVMVVGSLVIIVNVLSDILGAMANP 311
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 133-350 7.14e-13

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 66.53  E-value: 7.14e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788504  133 LPVSITLGLWSTLIIYLVSIPLGIRKAVYNGsRFDVWSSAFIIIGYAIPAFLFAILLIVFFAGGSYFDLFPlrglvsanf 212
Cdd:cd06261   1 LLNTLLLALIATLLALVLGLLLGIILARKRG-KLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILP--------- 70

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788504  213 dslpwyqkitdylwHITLPVLATVIGGFAALTMLTKNSFLDEVRKQYVVTARAKGVSEKNILWKHVFRNAMLLVIAGFPA 292
Cdd:cd06261  71 --------------GLGLPALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVL 136

                       170       180       190       200       210
                ....*....|....*....|....*....|....*....|....*....|....*...
gi 1788504  293 TFISMFftGSLLIEVMFSLNGLGLLGYEATVSRDYPvmFGTLYIFTLIGLLLNIVSDI 350
Cdd:cd06261 137 AFARAL--GEFALVSFLGGGEAPGPGTGLLLIFAIL--FPGDLGVAAAVALILLLLSL 190
DppC COG1173
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
 135-316 4.11e-08

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


Pssm-ID: 440786 [Multi-domain]  Cd Length: 275  Bit Score: 53.96  E-value: 4.11e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788504  135 VSITLGLWSTLIIYLVSIPLGIrKAVYNGSRFDVWSSAFIIIGYAIPAFLFAILLIVFFAGGsyfdlfplrglvsanfds 214
Cdd:COG1173  80 ISLLVGLLAVLIALVIGVLLGL-LAGYFGGWVDAVLMRLVDVLLAFPSLLLAIALVAVLGPG------------------ 140

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788504  215 lpwyqkitdylwhITLPVLATVIGGFAALTMLTKNSFLDEVRKQYVVTARAKGVSEKNILWKHVFRNAMLLVIAGFpatf 294
Cdd:COG1173 141 -------------LLNVILALGLTGWPGYARLVRAQVLSLREREYVEAARALGASPLRIIFRHILPNVLPPLIVQA---- 203

                       170       180
                ....*....|....*....|..
gi 1788504  295 iSMFFTGSLLIEVMFSLNGLGL 316
Cdd:COG1173 204 -TLGIASAILAEAGLSFLGLGV 224
PRK15021 PRK15021
microcin C ABC transporter permease; Provisional
 125-316 1.08e-06

microcin C ABC transporter permease; Provisional


Pssm-ID: 184982 [Multi-domain]  Cd Length: 341  Bit Score: 49.98  E-value: 1.08e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788504   125 VLTLIKDSLPVSITLGLWSTLIIYLVSIPLGIRKAVYnGSRFDVWSSAFIIIGYAIPAfLFAILLivffaggsyfdlfpL 204
Cdd:PRK15021 132 VLARILYGTRISVLFGLMLTLCSSVMGVLAGALQGYY-GGKVDLWGQRFIEVWSGMPT-LFLIIL--------------L 195

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788504   205 RGLVSANFdslpWyqkitdylWHITLpvlaTVIGGFAALTMLTKNSFLDEVRKQYVVTARAKGVSEKNILWKHVFRNAML 284
Cdd:PRK15021 196 SSVVQPNF----W--------WLLAI----TVLFGWMSLVGVVRAEFLRTRNFDYIRAAQALGVSDRSIILRHMLPNAMV 259

                        170       180       190
                 ....*....|....*....|....*....|..
gi 1788504   285 LVIagfpaTFISMFFTGSllIEVMFSLNGLGL 316
Cdd:PRK15021 260 ATL-----TFLPFILCSS--ITTLTSLDFLGF 284
YejE COG4239
ABC-type microcin C transport system, permease component YejE [Secondary metabolites ...
 135-319 1.22e-05

ABC-type microcin C transport system, permease component YejE [Secondary metabolites biosynthesis, transport and catabolism];


Pssm-ID: 443381 [Multi-domain]  Cd Length: 342  Bit Score: 46.68  E-value: 1.22e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788504  135 VSITLGLWSTLIIYLVSIPLGirkAV--YNGSRFDVWSSAFIIIGYAIPaFLFaiLLIVFFAggsyfdlfplrgLVSANF 212
Cdd:COG4239 142 ISVLFGLALTVISSVIGVAAG---AVqgYFGGRVDLLFQRFIEIWSSMP-ELY--LLIILSS------------IFQPSF 203

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1788504  213 DSLpwyqkitdylwhitlpVLATVIGGFAALTMLTKNSFLDEVRKQYVVTARAKGVSEKNILWKHVFRNAMLLVIagfpa 292
Cdd:COG4239 204 WLL----------------LGILLLFGWMGLVGVVRAEFLRARNLEYVRAARALGVSDRRIMFRHILPNAMVATL----- 262

                       170       180
                ....*....|....*....|....*..
gi 1788504  293 TFISMFFTGSLLievmfSLNGLGLLGY 319
Cdd:COG4239 263 TFLPFILSGAIT-----TLTSLDFLGF 284
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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