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Conserved domains on  [gi|1789793|gb|AAC76416|]
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DNA utilization protein HofQ [Escherichia coli str. K-12 substr. MG1655]

Protein Classification

DNA uptake porin HofQ( domain architecture ID 11484798)

DNA uptake porin HofQ is required for the use of extracellular DNA as a nutrient

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
hofQ PRK10560
outer membrane porin HofQ; Provisional
 27-412 0e+00

outer membrane porin HofQ; Provisional


:

Pssm-ID: 182549 [Multi-domain]  Cd Length: 386  Bit Score: 754.73  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789793    27 MVDDVPVAQVLQALAEQEKLNLVVSPDVSGTVSLHLTDVPWKQALQTVVKSAGLITRQEGNILSVHSIAWQNNNIARQEA 106
Cdd:PRK10560   1 MVDDVPVAQVLQALAEQEKLNLVVSPDVSGTVSLHLTDVPWKQALQTVVKSAGLILRQEGNILSVHSQAWQNENIARQEA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789793   107 EQARAQANLPLENRSITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKTALSALEQWVAQMDLPVGQVELSAH 186
Cdd:PRK10560  81 EQARAQANLPLENRSITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKTALSALEQWVAQMDLPVGQVELAAH 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789793   187 IVTINEKSLRELGVKWTLADAQHAGGVGQVTTLGSDLSVATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLL 266
Cdd:PRK10560 161 IVTINEKSLRELGVKWTLADAQQAGGVGQVTTLGSDLSVATATTRVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789793   267 ASHLQPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEI 346
Cdd:PRK10560 241 ASHLQPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEI 320

                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1789793   347 ETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLVSSE 412
Cdd:PRK10560 321 ETQVEVKSGETLALGGIFSRKNKSGQDSVPLLGDIPWLGQLFRHDGKEDERRELVVFITPRLVSSE 386
 
Name Accession Description Interval E-value
hofQ PRK10560
outer membrane porin HofQ; Provisional
 27-412 0e+00

outer membrane porin HofQ; Provisional


Pssm-ID: 182549 [Multi-domain]  Cd Length: 386  Bit Score: 754.73  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789793    27 MVDDVPVAQVLQALAEQEKLNLVVSPDVSGTVSLHLTDVPWKQALQTVVKSAGLITRQEGNILSVHSIAWQNNNIARQEA 106
Cdd:PRK10560   1 MVDDVPVAQVLQALAEQEKLNLVVSPDVSGTVSLHLTDVPWKQALQTVVKSAGLILRQEGNILSVHSQAWQNENIARQEA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789793   107 EQARAQANLPLENRSITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKTALSALEQWVAQMDLPVGQVELSAH 186
Cdd:PRK10560  81 EQARAQANLPLENRSITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKTALSALEQWVAQMDLPVGQVELAAH 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789793   187 IVTINEKSLRELGVKWTLADAQHAGGVGQVTTLGSDLSVATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLL 266
Cdd:PRK10560 161 IVTINEKSLRELGVKWTLADAQQAGGVGQVTTLGSDLSVATATTRVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789793   267 ASHLQPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEI 346
Cdd:PRK10560 241 ASHLQPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEI 320

                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1789793   347 ETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLVSSE 412
Cdd:PRK10560 321 ETQVEVKSGETLALGGIFSRKNKSGQDSVPLLGDIPWLGQLFRHDGKEDERRELVVFITPRLVSSE 386
IV_pilus_PilQ TIGR02515
type IV pilus secretin (or competence protein) PilQ; A number of proteins homologous to PilQ ...
 21-410 1.62e-179

type IV pilus secretin (or competence protein) PilQ; A number of proteins homologous to PilQ are involved in type IV pilus formation, competence for transformation, type III secretion, and type II secretion (also called the main terminal branch of the general secretion pathway). Members of this family include PilQ itself, which is a component of the type IV pilus structure, from a number of species. In Haemophilus influenzae, the member of this family is associated with competence for transformation with exogenous DNA rather than with formation of a type IV pilus; the surface structure required for competence may be considered an unusual, incomplete type IV pilus structure. [Cell envelope, Surface structures]


Pssm-ID: 274173 [Multi-domain]  Cd Length: 418  Bit Score: 506.47  E-value: 1.62e-179
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789793     21 PQKVTLMVDDVPVAQVLQALAEQEKLNLVVSPDVSGTVSLHLTDVPWKQALQTVVKSAGLITRQEGNILSVHSIAWQNNN 100
Cdd:TIGR02515   1 GEKISLNFQDIPVRTVLQVIAEFTGLNIVVSDSVQGNITLRLKNVPWDQALDIVLKSKGLDKRRDGNIIYIAPLDELAAQ 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789793    101 IARQEAEQARAQANLPLENRSITLQYADAGELAK-------AGEKLLSAKGSMTVDKRTNRLLLRDNKTALSALEQWVAQ 173
Cdd:TIGR02515  81 EKDELEAKKQIENLEPLQTELIQLNYAKASDIAKvltgvtgGSGGLLSPRGSVTVDPRTNTLIVTDTPENLARIRKLIAE 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789793    174 MDLPVGQVELSAHIVTINEKSLRELGVKWTLADAQHAGG----------------------VGQVTTLGSDLSVATATTH 231
Cdd:TIGR02515 161 LDIPVRQVLIEARIVEATDSFSRELGVRWGITDKNGNGNgtaggiggnngttatgaggtgnPPFGDNLNVNLATATTAAG 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789793    232 VGFNIGRIN-GRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGeSGATSVEFKEAVLGMEVTPTV 310
Cdd:TIGR02515 241 ISFALGKIGsGRLLDLELSALESEGKGEIISSPRVLTANNKEAKIEQGTEIPYQQTSS-SGATSVEFKEAVLSLEVTPQI 319

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789793    311 LQKGRIRLKLHISQNVPGQVlQQADGEVLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRH 390
Cdd:TIGR02515 320 TPDGRIIMDLLVSKDSPGVV-AQAGGGVPAIDKQEINTQVLVKNGETVVIGGIYEQTQTNSEDKVPLLGDIPVLGNLFKK 398

                         410       420
                  ....*....|....*....|
gi 1789793    391 DGKEDERRELVVFITPRLVS 410
Cdd:TIGR02515 399 TGKSDEKSELLIFITPRIVN 418
HofQ COG4796
Type II secretory pathway, component HofQ [Intracellular trafficking, secretion, and vesicular ...
 22-412 2.29e-163

Type II secretory pathway, component HofQ [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 443824 [Multi-domain]  Cd Length: 570  Bit Score: 470.88  E-value: 2.29e-163
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789793   22 QKVTLMVDDVPVAQVLQALAEQEKLNLVVSPDVSGTVSLHLTDVPWKQALQTVVKSAGLITRQEGNILSVHSIAWQNNNi 101
Cdd:COG4796 161 EKLSLNFQDIPVRSVLQLIADFTGLNLVISDSVTGNITLRLKNVPWDQALDIILKAKGLDKRKNGNVLLVAPAEELAAR- 239

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789793  102 ARQEAEQARAQANL-PLENRSITLQYADAGELAK----AGEKLLSAKGSMTVDKRTNRLLLRDNKTALSALEQWVAQMDL 176
Cdd:COG4796 240 EKLELEAKQQIEELePLRTEYIQLNYAKASDLAKllkgQRGSLLSERGSVTVDERTNTLIVRDTPSKLEEIRRLIAKLDI 319

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789793  177 PVGQVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTT----------------LGSDLSVATATTHVGFNIGRI- 239
Cdd:COG4796 320 PVRQVLIEARIVEASDSFSRELGVRWGGSGANGTGNNRGGIGgslngttagtpllpdgLNVNLPAANPAGSLGLTLAKLg 399

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789793  240 NGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSgESGATSVEFKEAVLGMEVTPTVLQKGRIRLK 319
Cdd:COG4796 400 GGRLLDLELSALEAEGKGEIISSPRVITADQQEASIEQGTEIPYQESS-SSGATSVEFKEAVLSLEVTPQITPDGRIILD 478

                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789793  320 LHISQNVPGQVLQqadGEVLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRE 399
Cdd:COG4796 479 LDVSKDSPGETVA---GGVPAIDTKEIKTQVLVENGETVVLGGIYEQTESNSVDKVPFLGDIPLLGWLFKNTTKTDEKRE 555

                       410
                ....*....|...
gi 1789793  400 LVVFITPRLVSSE 412
Cdd:COG4796 556 LLIFITPRIVKDA 568
Secretin pfam00263
Bacterial type II and III secretion system protein;
250-409 5.83e-52

Bacterial type II and III secretion system protein;


Pssm-ID: 459738 [Multi-domain]  Cd Length: 159  Bit Score: 171.16  E-value: 5.83e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789793    250 ALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSS--GESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVP 327
Cdd:pfam00263   1 ALEQNGKAKILSSPSLLTLDNQEASIKVGQEVPVPTTSttGGTTTTTVEFKDAGLSLKVTPQVTPDGTITLKINPEVSSP 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789793    328 GQVlqqADGEVLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPR 407
Cdd:pfam00263  81 DGN---GGNGVPTINTREISTTVRVKDGQTVVIGGLIQEEDSETESKVPLLGDIPLLGALFRSTSKSKEKTELLIFITPR 157


                  ..
gi 1789793    408 LV 409
Cdd:pfam00263 158 IV 159
 
Name Accession Description Interval E-value
hofQ PRK10560
outer membrane porin HofQ; Provisional
 27-412 0e+00

outer membrane porin HofQ; Provisional


Pssm-ID: 182549 [Multi-domain]  Cd Length: 386  Bit Score: 754.73  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789793    27 MVDDVPVAQVLQALAEQEKLNLVVSPDVSGTVSLHLTDVPWKQALQTVVKSAGLITRQEGNILSVHSIAWQNNNIARQEA 106
Cdd:PRK10560   1 MVDDVPVAQVLQALAEQEKLNLVVSPDVSGTVSLHLTDVPWKQALQTVVKSAGLILRQEGNILSVHSQAWQNENIARQEA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789793   107 EQARAQANLPLENRSITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKTALSALEQWVAQMDLPVGQVELSAH 186
Cdd:PRK10560  81 EQARAQANLPLENRSITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKTALSALEQWVAQMDLPVGQVELAAH 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789793   187 IVTINEKSLRELGVKWTLADAQHAGGVGQVTTLGSDLSVATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLL 266
Cdd:PRK10560 161 IVTINEKSLRELGVKWTLADAQQAGGVGQVTTLGSDLSVATATTRVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789793   267 ASHLQPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEI 346
Cdd:PRK10560 241 ASHLQPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEI 320

                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1789793   347 ETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLVSSE 412
Cdd:PRK10560 321 ETQVEVKSGETLALGGIFSRKNKSGQDSVPLLGDIPWLGQLFRHDGKEDERRELVVFITPRLVSSE 386
hofQ PRK13568
DNA uptake porin HofQ;
36-412 0e+00

DNA uptake porin HofQ;


Pssm-ID: 237430 [Multi-domain]  Cd Length: 381  Bit Score: 520.83  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789793    36 VLQALAEQEKLNLVVSPDVSGTVSLHLTDVPWKQALQTVVKSAGLITRQEGNILSVHSIAWQNNNIARQEAEQARAQANL 115
Cdd:PRK13568   1 VLQALADYQQLNLVTAPGVGGNLSLRLIEVPWEQALAIILRMGKLSAEREGNVLMVFPEQEIQERQQKTKQQAAPQEQML 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789793   116 PLENRSITLQYADAGELAK----AGEKLLSAKGSMTVDKRTNRLLLRDNKTALSALEQWVAQMDLPVGQVELSAHIVTIN 191
Cdd:PRK13568  81 PLANLTLTLQYADAEEVADslqsQRGGLLSPRGSVTADKRTNTLLIRDTPAALAQLKNWLIELDLPLQQVQLAAHIVTIS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789793   192 EKSLRELGVKWTLADAQHAGGVGQVTTLGSDLSVATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQ 271
Cdd:PRK13568 161 SESLQELGVRWGMGEGKQGNTALRINDFNVNLPLPNPAASAGFHLARLGGRLLDLELSALEQENQVDIIASPRLFTSHQQ 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789793   272 PASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVE 351
Cdd:PRK13568 241 TASIKQGTEIPYTVSSGKSGSTSIEFKEAVLGMEVTPKILRNGRITLKLKISQNMPGRTIKRGEGEMLAIDKQEIQTQVT 320

                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1789793   352 VKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLVSSE 412
Cdd:PRK13568 321 VKDGETIVLGGIFQQQKRQSVNKVPLLGDIPLLGALFRQDTQQQSRRELVIFITPKLISAD 381
IV_pilus_PilQ TIGR02515
type IV pilus secretin (or competence protein) PilQ; A number of proteins homologous to PilQ ...
 21-410 1.62e-179

type IV pilus secretin (or competence protein) PilQ; A number of proteins homologous to PilQ are involved in type IV pilus formation, competence for transformation, type III secretion, and type II secretion (also called the main terminal branch of the general secretion pathway). Members of this family include PilQ itself, which is a component of the type IV pilus structure, from a number of species. In Haemophilus influenzae, the member of this family is associated with competence for transformation with exogenous DNA rather than with formation of a type IV pilus; the surface structure required for competence may be considered an unusual, incomplete type IV pilus structure. [Cell envelope, Surface structures]


Pssm-ID: 274173 [Multi-domain]  Cd Length: 418  Bit Score: 506.47  E-value: 1.62e-179
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789793     21 PQKVTLMVDDVPVAQVLQALAEQEKLNLVVSPDVSGTVSLHLTDVPWKQALQTVVKSAGLITRQEGNILSVHSIAWQNNN 100
Cdd:TIGR02515   1 GEKISLNFQDIPVRTVLQVIAEFTGLNIVVSDSVQGNITLRLKNVPWDQALDIVLKSKGLDKRRDGNIIYIAPLDELAAQ 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789793    101 IARQEAEQARAQANLPLENRSITLQYADAGELAK-------AGEKLLSAKGSMTVDKRTNRLLLRDNKTALSALEQWVAQ 173
Cdd:TIGR02515  81 EKDELEAKKQIENLEPLQTELIQLNYAKASDIAKvltgvtgGSGGLLSPRGSVTVDPRTNTLIVTDTPENLARIRKLIAE 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789793    174 MDLPVGQVELSAHIVTINEKSLRELGVKWTLADAQHAGG----------------------VGQVTTLGSDLSVATATTH 231
Cdd:TIGR02515 161 LDIPVRQVLIEARIVEATDSFSRELGVRWGITDKNGNGNgtaggiggnngttatgaggtgnPPFGDNLNVNLATATTAAG 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789793    232 VGFNIGRIN-GRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGeSGATSVEFKEAVLGMEVTPTV 310
Cdd:TIGR02515 241 ISFALGKIGsGRLLDLELSALESEGKGEIISSPRVLTANNKEAKIEQGTEIPYQQTSS-SGATSVEFKEAVLSLEVTPQI 319

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789793    311 LQKGRIRLKLHISQNVPGQVlQQADGEVLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRH 390
Cdd:TIGR02515 320 TPDGRIIMDLLVSKDSPGVV-AQAGGGVPAIDKQEINTQVLVKNGETVVIGGIYEQTQTNSEDKVPLLGDIPVLGNLFKK 398

                         410       420
                  ....*....|....*....|
gi 1789793    391 DGKEDERRELVVFITPRLVS 410
Cdd:TIGR02515 399 TGKSDEKSELLIFITPRIVN 418
HofQ COG4796
Type II secretory pathway, component HofQ [Intracellular trafficking, secretion, and vesicular ...
 22-412 2.29e-163

Type II secretory pathway, component HofQ [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 443824 [Multi-domain]  Cd Length: 570  Bit Score: 470.88  E-value: 2.29e-163
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789793   22 QKVTLMVDDVPVAQVLQALAEQEKLNLVVSPDVSGTVSLHLTDVPWKQALQTVVKSAGLITRQEGNILSVHSIAWQNNNi 101
Cdd:COG4796 161 EKLSLNFQDIPVRSVLQLIADFTGLNLVISDSVTGNITLRLKNVPWDQALDIILKAKGLDKRKNGNVLLVAPAEELAAR- 239

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789793  102 ARQEAEQARAQANL-PLENRSITLQYADAGELAK----AGEKLLSAKGSMTVDKRTNRLLLRDNKTALSALEQWVAQMDL 176
Cdd:COG4796 240 EKLELEAKQQIEELePLRTEYIQLNYAKASDLAKllkgQRGSLLSERGSVTVDERTNTLIVRDTPSKLEEIRRLIAKLDI 319

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789793  177 PVGQVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTT----------------LGSDLSVATATTHVGFNIGRI- 239
Cdd:COG4796 320 PVRQVLIEARIVEASDSFSRELGVRWGGSGANGTGNNRGGIGgslngttagtpllpdgLNVNLPAANPAGSLGLTLAKLg 399

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789793  240 NGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSgESGATSVEFKEAVLGMEVTPTVLQKGRIRLK 319
Cdd:COG4796 400 GGRLLDLELSALEAEGKGEIISSPRVITADQQEASIEQGTEIPYQESS-SSGATSVEFKEAVLSLEVTPQITPDGRIILD 478

                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789793  320 LHISQNVPGQVLQqadGEVLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRE 399
Cdd:COG4796 479 LDVSKDSPGETVA---GGVPAIDTKEIKTQVLVENGETVVLGGIYEQTESNSVDKVPFLGDIPLLGWLFKNTTKTDEKRE 555

                       410
                ....*....|...
gi 1789793  400 LVVFITPRLVSSE 412
Cdd:COG4796 556 LLIFITPRIVKDA 568
PulD COG1450
Type II secretory pathway component GspD/PulD (secretin) [Intracellular trafficking, secretion, ...
 126-412 2.38e-69

Type II secretory pathway component GspD/PulD (secretin) [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 441059 [Multi-domain]  Cd Length: 333  Bit Score: 222.10  E-value: 2.38e-69
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789793  126 YADAGELAKAGEKLLS--AKGSMTVDKRTNRLLLRDNKTALSALEQWVAQMDLPVGQVELSAHIVTINEKSLRELGVKWT 203
Cdd:COG1450  24 YADAEDLAKVLRSLLGgaAGVSVVADPRTNSLIVRATPEQLREIEELIEQLDVPRRQVLIEAKIVEVSLSDLRELGIDWS 103

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789793  204 LADAqhAGGVGQVTTLGSDLSVATATT-HVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIP 282
Cdd:COG1450 104 ALGG--NGGGVNFGGTGSLGSLAAAGSlGGGLNLGLLGGGNFGALLNALESNGDANVLSSPSILTLNNQEAVIKVGQTVP 181

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789793  283 YQVSSGESGAT-----SVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEVKSGET 357
Cdd:COG1450 182 YVTGSTTTSSTgnpttTIEYVDVGITLKVTPQINEDGTVTLDINPEVSSVTGSTTGGGNGLPTINKREISTTVRVKDGQT 261

                       250       260       270       280       290
                ....*....|....*....|....*....|....*....|....*....|....*
gi 1789793  358 LALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLVSSE 412
Cdd:COG1450 262 VVLGGLIRDEESESESKVPLLGDIPLLGRLFRSTSKSKEKTELVIFITPTIIRDG 316
Secretin pfam00263
Bacterial type II and III secretion system protein;
250-409 5.83e-52

Bacterial type II and III secretion system protein;


Pssm-ID: 459738 [Multi-domain]  Cd Length: 159  Bit Score: 171.16  E-value: 5.83e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789793    250 ALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSS--GESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVP 327
Cdd:pfam00263   1 ALEQNGKAKILSSPSLLTLDNQEASIKVGQEVPVPTTSttGGTTTTTVEFKDAGLSLKVTPQVTPDGTITLKINPEVSSP 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789793    328 GQVlqqADGEVLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPR 407
Cdd:pfam00263  81 DGN---GGNGVPTINTREISTTVRVKDGQTVVIGGLIQEEDSETESKVPLLGDIPLLGALFRSTSKSKEKTELLIFITPR 157


                  ..
gi 1789793    408 LV 409
Cdd:pfam00263 158 IV 159
IV PHA00019
phage assembly protein
 8-412 3.70e-47

phage assembly protein


Pssm-ID: 222772 [Multi-domain]  Cd Length: 428  Bit Score: 166.91  E-value: 3.70e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789793     8 LLLMLIPGVQAAKPQKVTLmvDDVPVAQVLQALAEQEKLNLVVSPDVSGTVSLH---LTDVPWKQALQTVVKSAGLITRQ 84
Cdd:PHA00019  10 LLFLLMFLSFSSFALPVEL--NNSPIREFVSWYSQQTGKSVVLGPDVKGNVTVYsadVNPANLPQFFDSVLRANGFDLVA 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789793    85 EGNILsVHSIAWQNNNIARQEAEQARAQAN------------LPLENRSITLQYADAGELAKAGEKLL----SAKGSMTV 148
Cdd:PHA00019  88 GGPAV-VIKQNPNQEDYADDLRDSRDDVFYdnsvpsgapevpNDLIVRTFNINNVRASDLLPLVKIFVksngAPGGSVTD 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789793   149 DKRTNRLLLRDNKTALSALEQWVAQMDLPVGQVELSAHIVtinEKSLRElGVKWTLADAQHAGG--VGQVTT--LGSDLS 224
Cdd:PHA00019 167 LPGTNSLVVSGSASQLPALADFISAIDVPRRQVLIEALIF---ETSLGD-GVDLSFAAGLASGGkvAGGFNTarLTTVLS 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789793   225 VAtatthvGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVS-------SGESGATSVEF 297
Cdd:PHA00019 243 SA------GGSFGIFNGNVLGLSVKALENSSNSRVLSRPRILTLSGQSGYISVGQNVPFVTGrvtgeaaNVNNPFQTIER 316

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789793   298 KEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADgevLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPL 377
Cdd:PHA00019 317 KDVGVSLEVTPVVMGDGQLVLDIDTKADSLSDSTIASD---IITNQRSLQTTVQVKDGQTLLLGGLISSNNTDGDSSVPF 393

                        410       420       430
                 ....*....|....*....|....*....|....*
gi 1789793   378 LGDIPWFGQLFRHDGKEDERRELVVFITPRLVSSE 412
Cdd:PHA00019 394 LSKIPLIGWLFRSKSDSNEQRTLYVLLTARVIKAL 428
type_II_gspD TIGR02517
type II secretion system protein D; In Gram-negative bacteria, proteins that have first ...
 120-412 4.52e-46

type II secretion system protein D; In Gram-negative bacteria, proteins that have first crossed the inner member by Sec-dependent protein transport can be exported across the outer membrane by type II secretion, also called the main terminal branch of the general secretion pathway. Members of this family are general secretion pathway protein D. In Yersinia enterocolitica, a second member of this family is part of a novel second type II secretion system specifically associated with virulence (See ). This family is closely homologous to the type IV pilus outer membrane secretin PilQ (TIGR02515) and to the type III secretion system pore YscC/HrcC (TIGR02516). [Protein fate, Protein and peptide secretion and trafficking]


Pssm-ID: 274175 [Multi-domain]  Cd Length: 594  Bit Score: 167.18  E-value: 4.52e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789793    120 RSITLQYADAGELAK----------------------------------AGEKLLSAKGSMTVDKRTNRLLLRDNKTALS 165
Cdd:TIGR02517 237 RVYYLRNADAEELAKtlqgvfggggnepgsssspglggavnpggsqsaqAASSASGGSVSGSADKATNSLIITASPQDYK 316

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789793    166 ALEQWVAQMDLPVGQVELSAHIVTINEKSLRELGVKWTLADaqHAGGVGQVTTLGSDLSVATA----------------T 229
Cdd:TIGR02517 317 NIRAVIKQLDVRRAQVLVEAIIVEVSLDDALELGVQWLIAG--TGGGVNFSTGSPNSGSLLGAsasaislgsagigllvT 394

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789793    230 THVGFNI--GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIP-----YQVSSGESGAT---SVEFKE 299
Cdd:TIGR02517 395 SSSTTSGvgGTGGGPNLGVLLNALKQDTGFNVLSTPSLLTLDNQEAEINVGQEVPvltgsYNTGTGGTNANpfnTYQRKD 474

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789793    300 AVLGMEVTPTVLQKGRIRLKLH--ISQNVPGQVLQQADGevLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPL 377
Cdd:TIGR02517 475 VGIKLKVTPQINEGGTVRLEIYqeVSSVAPTTVGSAASG--PTFNKREIKTVVLVDNGDTVVLGGLIQDKTSESVTKVPL 552

                         330       340       350
                  ....*....|....*....|....*....|....*
gi 1789793    378 LGDIPWFGQLFRHDGKEDERRELVVFITPRLVSSE 412
Cdd:TIGR02517 553 LGDIPVLGWLFRSTTTERTKTNLMVFITPRIIRDP 587
CpaC COG4964
Flp pilus assembly protein, secretin CpaC [Intracellular trafficking, secretion, and vesicular ...
 180-409 1.22e-45

Flp pilus assembly protein, secretin CpaC [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 443990 [Multi-domain]  Cd Length: 456  Bit Score: 163.50  E-value: 1.22e-45
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789793  180 QVELSAHIVTINEKSLRELGVKWTLAD--AQHAGGVGQVTTLGSDLSVATATTHVGFNIGRINgrlLDLELSALEQKQQL 257
Cdd:COG4964 176 QVMLKVRVAEVSRSVLKQLGINWSGLGssGGFSFGLLTGGLLSGLLGGATAGAFSGFGFGNAS---ISATLDALEQNGLA 252

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789793  258 DIIASPRLLASHLQPASIKQGSEIPYQVSSGeSGATSVEFKEAVLGMEVTPTVLQKGRIRLKLH--ISQNVPGQVLQQAD 335
Cdd:COG4964 253 RVLAEPNLTALSGETASFLAGGEFPIPVAQG-DGTITVEYKEFGVSLNFTPTVLSNGRISLKVApeVSELDPSNAVTLNG 331

                       170       180       190       200       210       220       230
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1789793  336 GEVLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLV 409
Cdd:COG4964 332 ITIPGLTTRRAETTVELRSGQSFAIAGLLSSNTRQNVSKVPGLGDIPILGALFRSRSFQRNETELVIIVTPYLV 405
type_III_yscC TIGR02516
type III secretion outer membrane pore, YscC/HrcC family; A number of proteins homologous to ...
 100-411 2.79e-36

type III secretion outer membrane pore, YscC/HrcC family; A number of proteins homologous to the type IV pilus secretin PilQ (TIGR02515) are involved in type IV pilus formation, competence for transformation, type III secretion, and type II secretion (also called the main terminal branch of the general secretion pathway). The clade described by this model contains the outer membrane pore proteins of bacterial type III secretion systems, typified by YscC for animal pathogens and HrcC for plant pathogens. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 274174 [Multi-domain]  Cd Length: 462  Bit Score: 138.28  E-value: 2.79e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789793    100 NIARQEAEQARAQAN-------LPLENRS---ITLQYAD----------------AGELAKAGEKLLSAKGSMTVDKRTN 153
Cdd:TIGR02516 129 NAATALEKQDQGRAGnrqvvkvFPLKYASasdRTYNYRDqkvtipgvatilrrllSGGRQGAGGGRASASPKISADPRTN 208

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789793    154 RLLLRDNKTALSALEQWVAQMDLPVGQVELSAHIVTINEKSLRELGVKWtladaQHAGGVGQVTTlGSDLSVATATTHVG 233
Cdd:TIGR02516 209 AVLIRDRPERMAIYEQLIQQLDVPPRLIEISAWIIDIDASDLSQLGVDW-----QATLGAGDRQT-GFNVSAGAGLGATG 282

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789793    234 FNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSsgesGATSVEFKEAVLG--MEVTPTVL 311
Cdd:TIGR02516 283 SSIVTSDGDYFMARVNALEQTGKAKIVSRPSVLTLENVQAVLDNNRTFYVKVS----GERVADLESVTAGtsLRVTPRVI 358

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789793    312 Q----KGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQL 387
Cdd:TIGR02516 359 GdegaQRQIKLNVDIEDGQQKTDGTSTVDALPEIKRTEINTQARVGHGQSLLIGGYYRDESADSVDGIPLLGDIPLLGNL 438

                         330       340
                  ....*....|....*....|....
gi 1789793    388 FRHDGKEDERRELVVFITPRLVSS 411
Cdd:TIGR02516 439 FRSTSKEKSRVVRLFLITPKIVRD 462
pilus_MshL TIGR02519
pilus (MSHA type) biogenesis protein MshL; Members of this family are predicted secretins, ...
 148-409 9.03e-30

pilus (MSHA type) biogenesis protein MshL; Members of this family are predicted secretins, that is, outer membrane pore proteins associated with delivery of proteins from periplasm to the outside of the cell. Related families include GspD of type II secretion (TIGR02517), the YscC/HrcC family from type III secretion (TIGR02516), and the PilQ secretin of type IV pilus formation (TIGR02515). Members of this family are found in gene clusters associated with MSHA (mannose-sensitive hemagglutinin) and related pili, and appear to be the secretin of this pilus system. [Cell envelope, Surface structures]


Pssm-ID: 274176 [Multi-domain]  Cd Length: 290  Bit Score: 116.71  E-value: 9.03e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789793    148 VDKRTNRLLLRDNKTALSALEQWVAQMDLPVG-QVELSAHI--VTINEKSlrELGVKWTLADAQHAGG-------VGQVT 217
Cdd:TIGR02519   3 INPEAGLLTVTATPAQIRRVEEYLESLQERIHrQVLIEAKIleVTLSDNH--QQGIDWSNFNGSGLARykalgaaNSNDS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789793    218 TLGSDLSVATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSS----GESGAT 293
Cdd:TIGR02519  81 SGNQFSSGLGFLDNIGLPTGVNSGFGFDSIINFLATFGDTKVLSNPKVMALNNQPAVISVGDNIRYVTEEsstgTTGGTT 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789793    294 SVEFKEAV-------LGMEVTPTVLQKGRIRLKLH-----ISQNVPGQVLQQADGEVLA--IDKQEIETQVEVKSGETLA 359
Cdd:TIGR02519 161 STASSDTRvdsvfsgIVLGVTPQISDDGKVILNVHpsiseVKPQSIDLNPVGNGAEVALpeISVKEMSSVLRVKDGDTVV 240

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|
gi 1789793    360 LGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLV 409
Cdd:TIGR02519 241 LGGLIDKKKSNTKTGLPFLGDIPGLGYLFGYKSKSKKKTELVIIIRPSVV 290
PRK15346 PRK15346
EscC/YscC/HrcC family type III secretion system outer membrane ring protein;
1-394 4.27e-19

EscC/YscC/HrcC family type III secretion system outer membrane ring protein;


Pssm-ID: 237950 [Multi-domain]  Cd Length: 499  Bit Score: 88.98  E-value: 4.27e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789793     1 MKQWIAALLLMLIPGVQAAKPQKV-------TLMVDDVPVAQVLQALAEQEKLNLVVSPDVSGTVSLHLTDVPWKQALQT 73
Cdd:PRK15346   1 MKKLLILIFLFLLNTAKFAASKSIpwqgnpfFIYSRGMPLAEVLHDLGANYGIPVVISPEINDTFSGKIRDGPPVKILNE 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789793    74 VVKSAGLITRQEGNILSVHSIA--------------------WQNNNI----------------------------ARQE 105
Cdd:PRK15346  81 LARRYHLTWYYDGNTLYVYKASeikrqvitptylsagrlikyLQSQGIlngkscevkaitgtnalevsgvpecierVTQL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789793   106 AEQARAQANLPLENRSI----TLQYADAG---------------------ELAKAGEKLLSAKGSMT------------V 148
Cdd:PRK15346 161 AKVLDEQAQKRKQNKETvkvfPLKYASATdttyqyrdqnvvvpgvvsvlrEMAQGNSLPLPGSNAVEgspasqalpvfsA 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789793   149 DKRTNRLLLRDNKTALSALEQWVAQMDLPVGQVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTTLGSDLSVATA 228
Cdd:PRK15346 241 DPRQNAVIVRDRAANMAIYRSLITQLDQRPQMIEISVSIIDVDAGDINQLGIDWSASASLGGGKISFNSGFADGNASGFS 320

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789793   229 TThvgfnIGRINGRLLdlELSALEQKQQLDIIASPRLLA-SHLQPASIK--------QGSEIPyQVSSGESGATsvefke 299
Cdd:PRK15346 321 TV-----ISNTGNFMV--RLNALEKNSKAKILSQPSVVTlNNIQAVLDKnvtfytklQGEKVA-KLESITTGSL------ 386

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789793   300 avlgMEVTPTVLQKG---RIRLKLHISQNVPGQVLQQADgEVLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVP 376
Cdd:PRK15346 387 ----LRVTPRLIDDNgtqKVMLNLNIQDGQQSATQSETD-PLPEVQNSEIATQATLKAGQSLLLGGFIQDKQIESQNKIP 461

                        490
                 ....*....|....*...
gi 1789793   377 LLGDIPWFGQLFRHDGKE 394
Cdd:PRK15346 462 LLGDIPLIGGLFRSTDKQ 479
PRK15339 PRK15339
EscC/YscC/HrcC family type III secretion system outer membrane ring protein;
98-407 4.46e-16

EscC/YscC/HrcC family type III secretion system outer membrane ring protein;


Pssm-ID: 237948 [Multi-domain]  Cd Length: 559  Bit Score: 80.20  E-value: 4.46e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789793    98 NNNIARQEAEQARAQANLPL----ENRSITLQYADAGELAKAGEKLLSAKG-SMTVDKRTNRLLLRDNKTALSALEQWVA 172
Cdd:PRK15339 215 NGEEQPSGRQASSEPPAMPPfsanGEKGKAANYAGGMSLQEALKQNAAAGDiKIIAYPDTNSLLVKGTAEQVHFIEMLVK 294

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789793   173 QMDLPVGQVELSAHIVTINEKSLRELGVKWTladaqhaGGVgqvtTLGSDLSVAtatthvgFNIGRI---NGRLLDLELS 249
Cdd:PRK15339 295 ALDVAKRHVELSLWIIDLDKSDLEQLGVNWS-------GSI----TIGDKLGVS-------LNQSSIstlDGSRFIAAVM 356

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789793   250 ALEQKQQLDIIASPRLLASHLQPAsIKQGSEIPYQVSSGESgatSVEFKEAVLG--MEVTPTVLQKGRIRLKLHI---SQ 324
Cdd:PRK15339 357 ALEQKKKANVVSRPVVLTQENIPA-IFDNNRTFYTKLVGER---NVALEHVTYGtmISVLPRFSADGQIEMSLDIedgNE 432

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789793   325 NVPGQVLQQADGEVLAIDKQEIETQVEVKSGETLALGGiFTRK-NKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVF 403
Cdd:PRK15339 433 KTPQSDTTTSVDALPEVGRTLISTIARVPQGKSLLIGG-YTRDaNTDEVQSIPFLGSLPLIGSLFRYSSKNKSNIVRVFL 511


                 ....
gi 1789793   404 ITPR 407
Cdd:PRK15339 512 IEPR 515
Secretin_N pfam03958
Bacterial type II/III secretion system short domain; This is a short, often repeated, domain ...
 120-180 4.56e-08

Bacterial type II/III secretion system short domain; This is a short, often repeated, domain found in bacterial type II/III secretory system proteins. All previous NolW-like domains fall into this family.


Pssm-ID: 461109 [Multi-domain]  Cd Length: 68  Bit Score: 49.52  E-value: 4.56e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1789793    120 RSITLQYADAGELAKA------GEKLLSAKGSMTVDKRTNRLLLRDNKTALSALEQWVAQMDLPVGQ 180
Cdd:pfam03958   2 RVIPLKYASAEDLASAlrsllgGSGLLSKRGSVVADPRTNSLIVSGPPEYVELVRQLIKQLDVPRAQ 68
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
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