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Conserved domains on  [gi|5114143|gb|AAD40227|]
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epithelial adenomatous polyposis coli [Drosophila melanogaster]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
APC_rep super family cl40092
Adenomatous polyposis coli (APC) repeat; Adenomatous polyposis coli contains an armadillo ...
 69-133 1.29e-11

Adenomatous polyposis coli (APC) repeat; Adenomatous polyposis coli contains an armadillo repeat and uses its highly conserved surface groove to recognize the APC-binding region (ABR) of Asef. This entry represents a single repeat unit of the Armadillo region.


The actual alignment was detected with superfamily member pfam18797:

Pssm-ID: 465870  Cd Length: 74  Bit Score: 61.02  E-value: 1.29e-11
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 5114143      69 PEEKERQREVKMLRLLDQILDYCNFL--HTQLQSGG-----EAIADDEDRHPLAAMKLLMKASFDEEHRQTM 133
Cdd:pfam18797    3 PDDKRGRREMRVLHLLEQIRAYCETCwdWQESHSRGpegdsNPMPSPIEHQICPAICALMKLSFDEEHRHAM 74
Arm pfam00514
Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form ...
 319-359 4.73e-06

Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats.


:

Pssm-ID: 425727 [Multi-domain]  Cd Length: 41  Bit Score: 44.37  E-value: 4.73e-06
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|.
gi 5114143     319 CEPYRQILRRYNCLAILLQQLKSESLTVVSNSCGTLWNLSA 359
Cdd:pfam00514    1 SPENKQAVIEAGAVPPLVRLLSSPDEEVQEEAAWALSNLAA 41
APC_r pfam05923
APC repeat; This short region is found repeated in the mid region of the adenomatous polyposis ...
 737-760 9.76e-06

APC repeat; This short region is found repeated in the mid region of the adenomatous polyposis proteins (APCs). In the human protein many cancer-linked SNPs are found near the first three occurrences of the motif. These repeats bind beta-catenin.


:

Pssm-ID: 461781  Cd Length: 24  Bit Score: 43.14  E-value: 9.76e-06
                           10        20
                   ....*....|....*....|....
gi 5114143     737 DKLNRFHVEHTPAAFSCATSLSNL 760
Cdd:pfam05923    1 DSPKRYCVEGTPANFSRASSLSSL 24
Arm pfam00514
Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form ...
 361-400 1.92e-05

Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats.


:

Pssm-ID: 425727 [Multi-domain]  Cd Length: 41  Bit Score: 42.44  E-value: 1.92e-05
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|
gi 5114143     361 CPEDQQYLIDHNAIPLLRALISSKNSMIAEGSASALKNLV 400
Cdd:pfam00514    1 SPENKQAVIEAGAVPPLVRLLSSPDEEVQEEAAWALSNLA 40
APC_r pfam05923
APC repeat; This short region is found repeated in the mid region of the adenomatous polyposis ...
 596-618 5.11e-05

APC repeat; This short region is found repeated in the mid region of the adenomatous polyposis proteins (APCs). In the human protein many cancer-linked SNPs are found near the first three occurrences of the motif. These repeats bind beta-catenin.


:

Pssm-ID: 461781  Cd Length: 24  Bit Score: 40.83  E-value: 5.11e-05
                           10        20
                   ....*....|....*....|...
gi 5114143     596 RPINYCEEGTPGSFSRFDSLNSL 618
Cdd:pfam05923    2 SPKRYCVEGTPANFSRASSLSSL 24
APC_15aa pfam05972
APC 15 residue motif; This motif, known as the 15 aa repeat, is found in the APC protein ...
 497-511 5.47e-04

APC 15 residue motif; This motif, known as the 15 aa repeat, is found in the APC protein family. They are involved in binding beta-catenin along with the pfam05923 repeats. Many human cancer mutations map to the region around these motifs, and may be involved in disrupting their binding of beta-catenin.


:

Pssm-ID: 461790  Cd Length: 15  Bit Score: 37.90  E-value: 5.47e-04
                           10
                   ....*....|....*
gi 5114143     497 TEEQPIDYSMKYMEH 511
Cdd:pfam05972    1 EEDQPIDYSLKYSEE 15
APC_r pfam05923
APC repeat; This short region is found repeated in the mid region of the adenomatous polyposis ...
 784-807 8.95e-04

APC repeat; This short region is found repeated in the mid region of the adenomatous polyposis proteins (APCs). In the human protein many cancer-linked SNPs are found near the first three occurrences of the motif. These repeats bind beta-catenin.


:

Pssm-ID: 461781  Cd Length: 24  Bit Score: 37.36  E-value: 8.95e-04
                           10        20
                   ....*....|....*....|....
gi 5114143     784 DAPRSYCTEDTTAVLSKAPSNSDL 807
Cdd:pfam05923    1 DSPKRYCVEGTPANFSRASSLSSL 24
ARM smart00185
Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form ...
 23-66 1.84e-03

Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.


:

Pssm-ID: 214547 [Multi-domain]  Cd Length: 41  Bit Score: 37.02  E-value: 1.84e-03
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|....
gi 5114143       23 NPETCTALRSSDCIQLLVQILHANDEGLstaKKYASQALHNIVH 66
Cdd:smart00185    1 DDENKQAVVDAGGLPALVELLKSEDEEV---VKEAAWALSNLSS 41
 
Name Accession Description Interval E-value
APC_rep pfam18797
Adenomatous polyposis coli (APC) repeat; Adenomatous polyposis coli contains an armadillo ...
 69-133 1.29e-11

Adenomatous polyposis coli (APC) repeat; Adenomatous polyposis coli contains an armadillo repeat and uses its highly conserved surface groove to recognize the APC-binding region (ABR) of Asef. This entry represents a single repeat unit of the Armadillo region.


Pssm-ID: 465870  Cd Length: 74  Bit Score: 61.02  E-value: 1.29e-11
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 5114143      69 PEEKERQREVKMLRLLDQILDYCNFL--HTQLQSGG-----EAIADDEDRHPLAAMKLLMKASFDEEHRQTM 133
Cdd:pfam18797    3 PDDKRGRREMRVLHLLEQIRAYCETCwdWQESHSRGpegdsNPMPSPIEHQICPAICALMKLSFDEEHRHAM 74
Arm pfam00514
Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form ...
 319-359 4.73e-06

Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats.


Pssm-ID: 425727 [Multi-domain]  Cd Length: 41  Bit Score: 44.37  E-value: 4.73e-06
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|.
gi 5114143     319 CEPYRQILRRYNCLAILLQQLKSESLTVVSNSCGTLWNLSA 359
Cdd:pfam00514    1 SPENKQAVIEAGAVPPLVRLLSSPDEEVQEEAAWALSNLAA 41
APC_r pfam05923
APC repeat; This short region is found repeated in the mid region of the adenomatous polyposis ...
 737-760 9.76e-06

APC repeat; This short region is found repeated in the mid region of the adenomatous polyposis proteins (APCs). In the human protein many cancer-linked SNPs are found near the first three occurrences of the motif. These repeats bind beta-catenin.


Pssm-ID: 461781  Cd Length: 24  Bit Score: 43.14  E-value: 9.76e-06
                           10        20
                   ....*....|....*....|....
gi 5114143     737 DKLNRFHVEHTPAAFSCATSLSNL 760
Cdd:pfam05923    1 DSPKRYCVEGTPANFSRASSLSSL 24
Arm pfam00514
Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form ...
 361-400 1.92e-05

Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats.


Pssm-ID: 425727 [Multi-domain]  Cd Length: 41  Bit Score: 42.44  E-value: 1.92e-05
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|
gi 5114143     361 CPEDQQYLIDHNAIPLLRALISSKNSMIAEGSASALKNLV 400
Cdd:pfam00514    1 SPENKQAVIEAGAVPPLVRLLSSPDEEVQEEAAWALSNLA 40
APC_r pfam05923
APC repeat; This short region is found repeated in the mid region of the adenomatous polyposis ...
 596-618 5.11e-05

APC repeat; This short region is found repeated in the mid region of the adenomatous polyposis proteins (APCs). In the human protein many cancer-linked SNPs are found near the first three occurrences of the motif. These repeats bind beta-catenin.


Pssm-ID: 461781  Cd Length: 24  Bit Score: 40.83  E-value: 5.11e-05
                           10        20
                   ....*....|....*....|...
gi 5114143     596 RPINYCEEGTPGSFSRFDSLNSL 618
Cdd:pfam05923    2 SPKRYCVEGTPANFSRASSLSSL 24
ARM smart00185
Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form ...
 319-359 1.75e-04

Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.


Pssm-ID: 214547 [Multi-domain]  Cd Length: 41  Bit Score: 39.72  E-value: 1.75e-04
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|.
gi 5114143      319 CEPYRQILRRYNCLAILLQQLKSESLTVVSNSCGTLWNLSA 359
Cdd:smart00185    1 DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41
APC_15aa pfam05972
APC 15 residue motif; This motif, known as the 15 aa repeat, is found in the APC protein ...
 497-511 5.47e-04

APC 15 residue motif; This motif, known as the 15 aa repeat, is found in the APC protein family. They are involved in binding beta-catenin along with the pfam05923 repeats. Many human cancer mutations map to the region around these motifs, and may be involved in disrupting their binding of beta-catenin.


Pssm-ID: 461790  Cd Length: 15  Bit Score: 37.90  E-value: 5.47e-04
                           10
                   ....*....|....*
gi 5114143     497 TEEQPIDYSMKYMEH 511
Cdd:pfam05972    1 EEDQPIDYSLKYSEE 15
APC_r pfam05923
APC repeat; This short region is found repeated in the mid region of the adenomatous polyposis ...
 784-807 8.95e-04

APC repeat; This short region is found repeated in the mid region of the adenomatous polyposis proteins (APCs). In the human protein many cancer-linked SNPs are found near the first three occurrences of the motif. These repeats bind beta-catenin.


Pssm-ID: 461781  Cd Length: 24  Bit Score: 37.36  E-value: 8.95e-04
                           10        20
                   ....*....|....*....|....
gi 5114143     784 DAPRSYCTEDTTAVLSKAPSNSDL 807
Cdd:pfam05923    1 DSPKRYCVEGTPANFSRASSLSSL 24
ARM smart00185
Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form ...
 23-66 1.84e-03

Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.


Pssm-ID: 214547 [Multi-domain]  Cd Length: 41  Bit Score: 37.02  E-value: 1.84e-03
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|....
gi 5114143       23 NPETCTALRSSDCIQLLVQILHANDEGLstaKKYASQALHNIVH 66
Cdd:smart00185    1 DDENKQAVVDAGGLPALVELLKSEDEEV---VKEAAWALSNLSS 41
ARM smart00185
Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form ...
 361-400 6.12e-03

Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.


Pssm-ID: 214547 [Multi-domain]  Cd Length: 41  Bit Score: 35.48  E-value: 6.12e-03
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|
gi 5114143      361 CPEDQQYLIDHNAIPLLRALISSKNSMIAEGSASALKNLV 400
Cdd:smart00185    1 DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40
 
Name Accession Description Interval E-value
APC_rep pfam18797
Adenomatous polyposis coli (APC) repeat; Adenomatous polyposis coli contains an armadillo ...
 69-133 1.29e-11

Adenomatous polyposis coli (APC) repeat; Adenomatous polyposis coli contains an armadillo repeat and uses its highly conserved surface groove to recognize the APC-binding region (ABR) of Asef. This entry represents a single repeat unit of the Armadillo region.


Pssm-ID: 465870  Cd Length: 74  Bit Score: 61.02  E-value: 1.29e-11
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 5114143      69 PEEKERQREVKMLRLLDQILDYCNFL--HTQLQSGG-----EAIADDEDRHPLAAMKLLMKASFDEEHRQTM 133
Cdd:pfam18797    3 PDDKRGRREMRVLHLLEQIRAYCETCwdWQESHSRGpegdsNPMPSPIEHQICPAICALMKLSFDEEHRHAM 74
Arm pfam00514
Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form ...
 319-359 4.73e-06

Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats.


Pssm-ID: 425727 [Multi-domain]  Cd Length: 41  Bit Score: 44.37  E-value: 4.73e-06
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|.
gi 5114143     319 CEPYRQILRRYNCLAILLQQLKSESLTVVSNSCGTLWNLSA 359
Cdd:pfam00514    1 SPENKQAVIEAGAVPPLVRLLSSPDEEVQEEAAWALSNLAA 41
APC_r pfam05923
APC repeat; This short region is found repeated in the mid region of the adenomatous polyposis ...
 737-760 9.76e-06

APC repeat; This short region is found repeated in the mid region of the adenomatous polyposis proteins (APCs). In the human protein many cancer-linked SNPs are found near the first three occurrences of the motif. These repeats bind beta-catenin.


Pssm-ID: 461781  Cd Length: 24  Bit Score: 43.14  E-value: 9.76e-06
                           10        20
                   ....*....|....*....|....
gi 5114143     737 DKLNRFHVEHTPAAFSCATSLSNL 760
Cdd:pfam05923    1 DSPKRYCVEGTPANFSRASSLSSL 24
Arm pfam00514
Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form ...
 361-400 1.92e-05

Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats.


Pssm-ID: 425727 [Multi-domain]  Cd Length: 41  Bit Score: 42.44  E-value: 1.92e-05
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|
gi 5114143     361 CPEDQQYLIDHNAIPLLRALISSKNSMIAEGSASALKNLV 400
Cdd:pfam00514    1 SPENKQAVIEAGAVPPLVRLLSSPDEEVQEEAAWALSNLA 40
APC_r pfam05923
APC repeat; This short region is found repeated in the mid region of the adenomatous polyposis ...
 596-618 5.11e-05

APC repeat; This short region is found repeated in the mid region of the adenomatous polyposis proteins (APCs). In the human protein many cancer-linked SNPs are found near the first three occurrences of the motif. These repeats bind beta-catenin.


Pssm-ID: 461781  Cd Length: 24  Bit Score: 40.83  E-value: 5.11e-05
                           10        20
                   ....*....|....*....|...
gi 5114143     596 RPINYCEEGTPGSFSRFDSLNSL 618
Cdd:pfam05923    2 SPKRYCVEGTPANFSRASSLSSL 24
ARM smart00185
Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form ...
 319-359 1.75e-04

Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.


Pssm-ID: 214547 [Multi-domain]  Cd Length: 41  Bit Score: 39.72  E-value: 1.75e-04
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|.
gi 5114143      319 CEPYRQILRRYNCLAILLQQLKSESLTVVSNSCGTLWNLSA 359
Cdd:smart00185    1 DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41
APC_15aa pfam05972
APC 15 residue motif; This motif, known as the 15 aa repeat, is found in the APC protein ...
 497-511 5.47e-04

APC 15 residue motif; This motif, known as the 15 aa repeat, is found in the APC protein family. They are involved in binding beta-catenin along with the pfam05923 repeats. Many human cancer mutations map to the region around these motifs, and may be involved in disrupting their binding of beta-catenin.


Pssm-ID: 461790  Cd Length: 15  Bit Score: 37.90  E-value: 5.47e-04
                           10
                   ....*....|....*
gi 5114143     497 TEEQPIDYSMKYMEH 511
Cdd:pfam05972    1 EEDQPIDYSLKYSEE 15
APC_r pfam05923
APC repeat; This short region is found repeated in the mid region of the adenomatous polyposis ...
 784-807 8.95e-04

APC repeat; This short region is found repeated in the mid region of the adenomatous polyposis proteins (APCs). In the human protein many cancer-linked SNPs are found near the first three occurrences of the motif. These repeats bind beta-catenin.


Pssm-ID: 461781  Cd Length: 24  Bit Score: 37.36  E-value: 8.95e-04
                           10        20
                   ....*....|....*....|....
gi 5114143     784 DAPRSYCTEDTTAVLSKAPSNSDL 807
Cdd:pfam05923    1 DSPKRYCVEGTPANFSRASSLSSL 24
ARM smart00185
Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form ...
 23-66 1.84e-03

Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.


Pssm-ID: 214547 [Multi-domain]  Cd Length: 41  Bit Score: 37.02  E-value: 1.84e-03
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|....
gi 5114143       23 NPETCTALRSSDCIQLLVQILHANDEGLstaKKYASQALHNIVH 66
Cdd:smart00185    1 DDENKQAVVDAGGLPALVELLKSEDEEV---VKEAAWALSNLSS 41
ARM smart00185
Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form ...
 361-400 6.12e-03

Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.


Pssm-ID: 214547 [Multi-domain]  Cd Length: 41  Bit Score: 35.48  E-value: 6.12e-03
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|
gi 5114143      361 CPEDQQYLIDHNAIPLLRALISSKNSMIAEGSASALKNLV 400
Cdd:smart00185    1 DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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