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Conserved domains on  [gi|6056412|gb|AAF02876|]
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Unknown protein [Arabidopsis thaliana]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RALF super family cl23823
Rapid ALkalinization Factor (RALF); Family members found in Arabidopsis include RALF23. It has ...
 45-119 1.50e-34

Rapid ALkalinization Factor (RALF); Family members found in Arabidopsis include RALF23. It has been shown to reduce plant growth upon overexpression while mature plants were dwarfed and bushy. It has also been suggested that RALF23 of Arabidopsis, counteracts brassinosteroid (BR) growth-promoting effects which may be relieved by the down-regulation of RALF23


The actual alignment was detected with superfamily member PLN03222:

Pssm-ID: 451565  Cd Length: 119  Bit Score: 115.60  E-value: 1.50e-34
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 6056412    45 SGCHGSIAEC---IGAEEEEMDSEINRRILATTKYISYQSLKRNSVPCSRRGASYYNCQNGAQANPYSRGCSKIARCR 119
Cdd:PLN03222  41 SKCNGTIAECslsTAEEEFEMDSEINRRILATTKYISYGALRRNTVPCSRRGASYYNCRRGAQANPYSRGCSAITRCR 118
 
Name Accession Description Interval E-value
PLN03222 PLN03222
rapid alkalinization factor 23-like protein; Provisional
 45-119 1.50e-34

rapid alkalinization factor 23-like protein; Provisional


Pssm-ID: 178761  Cd Length: 119  Bit Score: 115.60  E-value: 1.50e-34
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 6056412    45 SGCHGSIAEC---IGAEEEEMDSEINRRILATTKYISYQSLKRNSVPCSRRGASYYNCQNGAQANPYSRGCSKIARCR 119
Cdd:PLN03222  41 SKCNGTIAECslsTAEEEFEMDSEINRRILATTKYISYGALRRNTVPCSRRGASYYNCRRGAQANPYSRGCSAITRCR 118
RALF pfam05498
Rapid ALkalinization Factor (RALF); Family members found in Arabidopsis include RALF23. It has ...
 58-119 1.79e-29

Rapid ALkalinization Factor (RALF); Family members found in Arabidopsis include RALF23. It has been shown to reduce plant growth upon overexpression while mature plants were dwarfed and bushy. It has also been suggested that RALF23 of Arabidopsis, counteracts brassinosteroid (BR) growth-promoting effects which may be relieved by the down-regulation of RALF23


Pssm-ID: 428496  Cd Length: 65  Bit Score: 100.85  E-value: 1.79e-29
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 6056412     58 EEEEMDSEINRRILA-TTKYISYQSLKRNSVPCS-RRGASYYNCQNGAQANPYSRGCSKIARCR 119
Cdd:pfam05498   1 EEVIMESEISRRVLAsQRKYISYGALKRNQVPCNgRRGASYYNCNPPGPANPYSRGCSKITRCR 64
 
Name Accession Description Interval E-value
PLN03222 PLN03222
rapid alkalinization factor 23-like protein; Provisional
 45-119 1.50e-34

rapid alkalinization factor 23-like protein; Provisional


Pssm-ID: 178761  Cd Length: 119  Bit Score: 115.60  E-value: 1.50e-34
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 6056412    45 SGCHGSIAEC---IGAEEEEMDSEINRRILATTKYISYQSLKRNSVPCSRRGASYYNCQNGAQANPYSRGCSKIARCR 119
Cdd:PLN03222  41 SKCNGTIAECslsTAEEEFEMDSEINRRILATTKYISYGALRRNTVPCSRRGASYYNCRRGAQANPYSRGCSAITRCR 118
PLN03221 PLN03221
rapid alkalinization factor 23; Provisional
 47-119 3.46e-30

rapid alkalinization factor 23; Provisional


Pssm-ID: 178760  Cd Length: 137  Bit Score: 105.14  E-value: 3.46e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6056412    47 CHGSIAECIGA-----------------EEEEMDSEINRRILATTKYISYQSLKRNSVPCSRRGASYYNCQNGAQANPYS 109
Cdd:PLN03221  47 CRGTIAECSVSaalgddgdlfygggemgAEFEMDSEINRRILATRRYISYGALRRNTIPCSRRGASYYNCRRGAQANPYS 126

                         90
                 ....*....|
gi 6056412   110 RGCSKIARCR 119
Cdd:PLN03221 127 RGCSAITRCR 136
RALF pfam05498
Rapid ALkalinization Factor (RALF); Family members found in Arabidopsis include RALF23. It has ...
 58-119 1.79e-29

Rapid ALkalinization Factor (RALF); Family members found in Arabidopsis include RALF23. It has been shown to reduce plant growth upon overexpression while mature plants were dwarfed and bushy. It has also been suggested that RALF23 of Arabidopsis, counteracts brassinosteroid (BR) growth-promoting effects which may be relieved by the down-regulation of RALF23


Pssm-ID: 428496  Cd Length: 65  Bit Score: 100.85  E-value: 1.79e-29
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 6056412     58 EEEEMDSEINRRILA-TTKYISYQSLKRNSVPCS-RRGASYYNCQNGAQANPYSRGCSKIARCR 119
Cdd:pfam05498   1 EEVIMESEISRRVLAsQRKYISYGALKRNQVPCNgRRGASYYNCNPPGPANPYSRGCSKITRCR 64
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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