|
Name |
Accession |
Description |
Interval |
E-value |
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
63-361 |
9.23e-111 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 329.18 E-value: 9.23e-111
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7243701 63 TLKFTLAGHTKAVSAVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKVWE 142
Cdd:COG2319 111 LLLRTLTGHTGAVRSVAFSPDGKTLASGSADGTVRLWDLATGKLLRTLTGHSGAVTSVAFSPDGKLLASGSDDGTVRLWD 190
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7243701 143 LSTGKSLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 222
Cdd:COG2319 191 LATGKLLRTLTGHTGAVRSVAFSPDGKLLASGSADGTVRLWDLATGKLLRTLTGHSGSVRSVAFSPDGRLLASGSADGTV 270
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7243701 223 RIWDTASGQCLKTLiDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIfaNFSvTGGKWIV 302
Cdd:COG2319 271 RLWDLATGELLRTL-TGHSGGVNSVAFSPDGKLLASGSDDGTVRLWDLATGKLLRTLTGHTGAVRSV--AFS-PDGKTLA 346
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 7243701 303 SGSEDNMVYIWNLQSKEVVQKLQGHTDTVLCTACHPTENIIASAAleNDKTIKLWKSDT 361
Cdd:COG2319 347 SGSDDGTVRLWDLATGELLRTLTGHTGAVTSVAFSPDGRTLASGS--ADGTVRLWDLAT 403
|
|
| WD40 |
cd00200 |
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ... |
64-358 |
6.55e-106 |
|
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.
Pssm-ID: 238121 [Multi-domain] Cd Length: 289 Bit Score: 312.35 E-value: 6.55e-106
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7243701 64 LKFTLAGHTKAVSAVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKVWEL 143
Cdd:cd00200 1 LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7243701 144 STGKSLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 223
Cdd:cd00200 81 ETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIK 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7243701 224 IWDTASGQCLKTLIDDDNpPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNekYCIFANFSvTGGKWIVS 303
Cdd:cd00200 161 LWDLRTGKCVATLTGHTG-EVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHEN--GVNSVAFS-PDGYLLAS 236
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 7243701 304 GSEDNMVYIWNLQSKEVVQKLQGHTDTVLCTACHPTENIIASAALenDKTIKLWK 358
Cdd:cd00200 237 GSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSA--DGTIRIWD 289
|
|
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
63-361 |
2.65e-99 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 299.90 E-value: 2.65e-99
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7243701 63 TLKFTLAGHTKAVSAVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKVWE 142
Cdd:COG2319 69 ALLATLLGHTAAVLSVAFSPDGRLLASASADGTVRLWDLATGLLLRTLTGHTGAVRSVAFSPDGKTLASGSADGTVRLWD 148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7243701 143 LSTGKSLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 222
Cdd:COG2319 149 LATGKLLRTLTGHSGAVTSVAFSPDGKLLASGSDDGTVRLWDLATGKLLRTLTGHTGAVRSVAFSPDGKLLASGSADGTV 228
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7243701 223 RIWDTASGQCLKTLiDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIfaNFSvTGGKWIV 302
Cdd:COG2319 229 RLWDLATGKLLRTL-TGHSGSVRSVAFSPDGRLLASGSADGTVRLWDLATGELLRTLTGHSGGVNSV--AFS-PDGKLLA 304
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 7243701 303 SGSEDNMVYIWNLQSKEVVQKLQGHTDTVLCTACHPTENIIASAAleNDKTIKLWKSDT 361
Cdd:COG2319 305 SGSDDGTVRLWDLATGKLLRTLTGHTGAVRSVAFSPDGKTLASGS--DDGTVRLWDLAT 361
|
|
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
66-361 |
9.12e-85 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 262.54 E-value: 9.12e-85
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7243701 66 FTLAGHTKAVSAVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKVWELST 145
Cdd:COG2319 30 LLLLGLAAAVASLAASPDGARLAAGAGDLTLLLLDAAAGALLATLLGHTAAVLSVAFSPDGRLLASASADGTVRLWDLAT 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7243701 146 GKSLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 225
Cdd:COG2319 110 GLLLRTLTGHTGAVRSVAFSPDGKTLASGSADGTVRLWDLATGKLLRTLTGHSGAVTSVAFSPDGKLLASGSDDGTVRLW 189
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7243701 226 DTASGQCLKTLIDDDNpPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIfaNFSvTGGKWIVSGS 305
Cdd:COG2319 190 DLATGKLLRTLTGHTG-AVRSVAFSPDGKLLASGSADGTVRLWDLATGKLLRTLTGHSGSVRSV--AFS-PDGRLLASGS 265
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 7243701 306 EDNMVYIWNLQSKEVVQKLQGHTDTVLCTACHPTENIIASAAleNDKTIKLWKSDT 361
Cdd:COG2319 266 ADGTVRLWDLATGELLRTLTGHSGGVNSVAFSPDGKLLASGS--DDGTVRLWDLAT 319
|
|
| WD40 |
cd00200 |
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ... |
63-314 |
1.76e-80 |
|
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.
Pssm-ID: 238121 [Multi-domain] Cd Length: 289 Bit Score: 247.63 E-value: 1.76e-80
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7243701 63 TLKFTLAGHTKAVSAVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKVWE 142
Cdd:cd00200 42 ELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWD 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7243701 143 LSTGKSLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 222
Cdd:cd00200 122 VETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTI 201
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7243701 223 RIWDTASGQCLKTLIDDDNpPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFanFSvTGGKWIV 302
Cdd:cd00200 202 KLWDLSTGKCLGTLRGHEN-GVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLA--WS-PDGKRLA 277
|
250
....*....|..
gi 7243701 303 SGSEDNMVYIWN 314
Cdd:cd00200 278 SGSADGTIRIWD 289
|
|
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
80-361 |
8.34e-68 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 218.63 E-value: 8.34e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7243701 80 FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKVWELSTGKSLKTLKGHSNYV 159
Cdd:COG2319 2 LSADGAALAAASADLALALLAAALGALLLLLLGLAAAVASLAASPDGARLAAGAGDLTLLLLDAAAGALLATLLGHTAAV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7243701 160 FCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD 239
Cdd:COG2319 82 LSVAFSPDGRLLASASADGTVRLWDLATGLLLRTLTGHTGAVRSVAFSPDGKTLASGSADGTVRLWDLATGKLLRTLTGH 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7243701 240 DNPPVSfVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIfaNFSvTGGKWIVSGSEDNMVYIWNLQSKE 319
Cdd:COG2319 162 SGAVTS-VAFSPDGKLLASGSDDGTVRLWDLATGKLLRTLTGHTGAVRSV--AFS-PDGKLLASGSADGTVRLWDLATGK 237
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 7243701 320 VVQKLQGHTDTVLCTACHPTENIIASAAleNDKTIKLWKSDT 361
Cdd:COG2319 238 LLRTLTGHSGSVRSVAFSPDGRLLASGS--ADGTVRLWDLAT 277
|
|
| WD40 |
cd00200 |
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ... |
60-226 |
8.92e-56 |
|
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.
Pssm-ID: 238121 [Multi-domain] Cd Length: 289 Bit Score: 184.08 E-value: 8.92e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7243701 60 PNYTLKFTLAGHTKAVSAVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLK 139
Cdd:cd00200 123 ETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIK 202
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7243701 140 VWELSTGKSLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 219
Cdd:cd00200 203 LWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSAD 282
|
....*..
gi 7243701 220 GLCRIWD 226
Cdd:cd00200 283 GTIRIWD 289
|
|
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
121-361 |
3.31e-49 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 170.09 E-value: 3.31e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7243701 121 AWSSDSRLLVSGSDDKTLKVWELSTGKSLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDP 200
Cdd:COG2319 1 ALSADGAALAAASADLALALLAAALGALLLLLLGLAAAVASLAASPDGARLAAGAGDLTLLLLDAAAGALLATLLGHTAA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7243701 201 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSfVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 280
Cdd:COG2319 81 VLSVAFSPDGRLLASASADGTVRLWDLATGLLLRTLTGHTGAVRS-VAFSPDGKTLASGSADGTVRLWDLATGKLLRTLT 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7243701 281 GHKNEKYCIfaNFSvTGGKWIVSGSEDNMVYIWNLQSKEVVQKLQGHTDTVLCTACHPTENIIASAAleNDKTIKLWKSD 360
Cdd:COG2319 160 GHSGAVTSV--AFS-PDGKLLASGSDDGTVRLWDLATGKLLRTLTGHTGAVRSVAFSPDGKLLASGS--ADGTVRLWDLA 234
|
.
gi 7243701 361 T 361
Cdd:COG2319 235 T 235
|
|
| WD40 |
cd00200 |
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ... |
148-361 |
1.06e-41 |
|
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.
Pssm-ID: 238121 [Multi-domain] Cd Length: 289 Bit Score: 147.48 E-value: 1.06e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7243701 148 SLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 227
Cdd:cd00200 1 LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7243701 228 ASGQCLKTLIDDDNPpVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTytghknekycifanfsvtggkwivsgsed 307
Cdd:cd00200 81 ETGECVRTLTGHTSY-VSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTT----------------------------- 130
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 7243701 308 nmvyiwnlqskevvqkLQGHTDTVLCTACHPTENIIASAAleNDKTIKLWKSDT 361
Cdd:cd00200 131 ----------------LRGHTDWVNSVAFSPDGTFVASSS--QDGTIKLWDLRT 166
|
|
| PLN00181 |
PLN00181 |
protein SPA1-RELATED; Provisional |
68-314 |
2.42e-20 |
|
protein SPA1-RELATED; Provisional
Pssm-ID: 177776 [Multi-domain] Cd Length: 793 Bit Score: 92.46 E-value: 2.42e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7243701 68 LAGHTKAVSAVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS-DSRLLVSGSDDKTLKVWELSTG 146
Cdd:PLN00181 529 LASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSaDPTLLASGSDDGSVKLWSINQG 608
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7243701 147 KSLKTLKGHSNyVFCCNFNPQSNLIVS-GSFDESVRIWDVRTGKC-LKTLPAHSDPVSAVHFnRDGSLIVSSSydglcri 224
Cdd:PLN00181 609 VSIGTIKTKAN-ICCVQFPSESGRSLAfGSADHKVYYYDLRNPKLpLCTMIGHSKTVSYVRF-VDSSTLVSSS------- 679
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7243701 225 wdtasgqclktlidddnppvsfvkfspngkyilaatLDNTLKLWDYSKGKC------LKTYTGHKNEKYciFANFSVTGG 298
Cdd:PLN00181 680 ------------------------------------TDNTLKLWDLSMSISginetpLHSFMGHTNVKN--FVGLSVSDG 721
|
250
....*....|....*.
gi 7243701 299 kWIVSGSEDNMVYIWN 314
Cdd:PLN00181 722 -YIATGSETNEVFVYH 736
|
|
| PTZ00421 |
PTZ00421 |
coronin; Provisional |
112-230 |
8.93e-13 |
|
coronin; Provisional
Pssm-ID: 173611 [Multi-domain] Cd Length: 493 Bit Score: 69.15 E-value: 8.93e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7243701 112 GHKLGISDVAWSS-DSRLLVSGSDDKTLKVWEL-------STGKSLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRI 182
Cdd:PTZ00421 73 GQEGPIIDVAFNPfDPQKLFTASEDGTIMGWGIpeegltqNISDPIVHLQGHTKKVGIVSFHPSAmNVLASAGADMVVNV 152
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 7243701 183 WDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 230
Cdd:PTZ00421 153 WDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDG 200
|
|
| PLN00181 |
PLN00181 |
protein SPA1-RELATED; Provisional |
68-351 |
1.31e-10 |
|
protein SPA1-RELATED; Provisional
Pssm-ID: 177776 [Multi-domain] Cd Length: 793 Bit Score: 62.80 E-value: 1.31e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7243701 68 LAGHTKAVSAVKFSPNGEWLASSSADKLIKIWgaydgkfektisghklgisdvawssDSRLLVSGSDDKTLKVWELSTGK 147
Cdd:PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIF-------------------------ECESIIKDGRDIHYPVVELASRS 533
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7243701 148 SLKTLkghsnyvfCCNFNPQSNlIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWD 226
Cdd:PLN00181 534 KLSGI--------CWNSYIKSQ-VASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSaDPTLLASGSDDGSVKLWS 604
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7243701 227 TASGQCLKTLIDDDNppVSFVKF-SPNGKYILAATLDNTLKLWDYSKGKC-LKTYTGH-KNEKYCIFANFSVtggkwIVS 303
Cdd:PLN00181 605 INQGVSIGTIKTKAN--ICCVQFpSESGRSLAFGSADHKVYYYDLRNPKLpLCTMIGHsKTVSYVRFVDSST-----LVS 677
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 7243701 304 GSEDNMVYIWNLQ------SKEVVQKLQGHTDTVLCTACHPTENIIASAALEND 351
Cdd:PLN00181 678 SSTDNTLKLWDLSmsisgiNETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNE 731
|
|
| WD40 |
smart00320 |
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ... |
187-226 |
5.74e-10 |
|
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Pssm-ID: 197651 [Multi-domain] Cd Length: 40 Bit Score: 53.86 E-value: 5.74e-10
10 20 30 40
....*....|....*....|....*....|....*....|
gi 7243701 187 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 226
Cdd:smart00320 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
|
| WD40 |
smart00320 |
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ... |
145-184 |
7.85e-10 |
|
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Pssm-ID: 197651 [Multi-domain] Cd Length: 40 Bit Score: 53.47 E-value: 7.85e-10
10 20 30 40
....*....|....*....|....*....|....*....|
gi 7243701 145 TGKSLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 184
Cdd:smart00320 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
|
| YncE |
COG3391 |
DNA-binding beta-propeller fold protein YncE [General function prediction only]; |
126-273 |
9.91e-10 |
|
DNA-binding beta-propeller fold protein YncE [General function prediction only];
Pssm-ID: 442618 [Multi-domain] Cd Length: 237 Bit Score: 58.17 E-value: 9.91e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7243701 126 SRLLVSGSDDKTLKVWELSTGKSLKTLK--GHSNYVFccnFNPQ-SNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVS 202
Cdd:COG3391 80 RRLYVANSGSGRVSVIDLATGKVVATIPvgGGPRGLA---VDPDgGRLYVADSGNGRVSVIDTATGKVVATIPVGAGPHG 156
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7243701 203 AVhFNRDGS-LIVSSSYDGlcRIW------DTASGQCLKTLIDDDNPpvSFVKFSPNGKYILAA--------TLDNTLKL 267
Cdd:COG3391 157 IA-VDPDGKrLYVANSGSN--TVSvivsviDTATGKVVATIPVGGGP--VGVAVSPDGRRLYVAnrgsntsnGGSNTVSV 231
|
....*.
gi 7243701 268 WDYSKG 273
Cdd:COG3391 232 IDLATL 237
|
|
| WD40 |
pfam00400 |
WD domain, G-beta repeat; |
188-226 |
2.67e-09 |
|
WD domain, G-beta repeat;
Pssm-ID: 459801 [Multi-domain] Cd Length: 39 Bit Score: 51.96 E-value: 2.67e-09
10 20 30
....*....|....*....|....*....|....*....
gi 7243701 188 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 226
Cdd:pfam00400 1 GKLLKTLEGHTGSVTSLAFSPDGKLLASGSDDGTVKVWD 39
|
|
| WD40 |
pfam00400 |
WD domain, G-beta repeat; |
146-184 |
1.09e-08 |
|
WD domain, G-beta repeat;
Pssm-ID: 459801 [Multi-domain] Cd Length: 39 Bit Score: 50.42 E-value: 1.09e-08
10 20 30
....*....|....*....|....*....|....*....
gi 7243701 146 GKSLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 184
Cdd:pfam00400 1 GKLLKTLEGHTGSVTSLAFSPDGKLLASGSDDGTVKVWD 39
|
|
| WD40 |
smart00320 |
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ... |
103-142 |
1.25e-08 |
|
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Pssm-ID: 197651 [Multi-domain] Cd Length: 40 Bit Score: 50.39 E-value: 1.25e-08
10 20 30 40
....*....|....*....|....*....|....*....|
gi 7243701 103 DGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKVWE 142
Cdd:smart00320 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
|
| PLN00181 |
PLN00181 |
protein SPA1-RELATED; Provisional |
211-357 |
1.53e-08 |
|
protein SPA1-RELATED; Provisional
Pssm-ID: 177776 [Multi-domain] Cd Length: 793 Bit Score: 56.25 E-value: 1.53e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7243701 211 SLIVSSSYDGLCRIWDTASGQcLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWDYSKGKCLKTYTGHKNeKYCI 289
Cdd:PLN00181 546 SQVASSNFEGVVQVWDVARSQ-LVTEMKEHEKRVWSIDYSSADPTLLASgSDDGSVKLWSINQGVSIGTIKTKAN-ICCV 623
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 7243701 290 faNFSVTGGKWIVSGSEDNMVYIWNLQSKEV-VQKLQGHTDTVLCTACHPTENIIASAaleNDKTIKLW 357
Cdd:PLN00181 624 --QFPSESGRSLAFGSADHKVYYYDLRNPKLpLCTMIGHSKTVSYVRFVDSSTLVSSS---TDNTLKLW 687
|
|
| PTZ00421 |
PTZ00421 |
coronin; Provisional |
68-249 |
1.61e-08 |
|
coronin; Provisional
Pssm-ID: 173611 [Multi-domain] Cd Length: 493 Bit Score: 56.05 E-value: 1.61e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7243701 68 LAGHTKAVSAVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTIS-------GH--KLGISDVAWSSDSrLLVSGSDDKT 137
Cdd:PTZ00421 71 LLGQEGPIIDVAFNPfDPQKLFTASEDGTIMGWGIPEEGLTQNISdpivhlqGHtkKVGIVSFHPSAMN-VLASAGADMV 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7243701 138 LKVWELSTGKSLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVS--AVHFNRDGSLI-- 213
Cdd:PTZ00421 150 VNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSqrCLWAKRKDLIItl 229
|
170 180 190
....*....|....*....|....*....|....*..
gi 7243701 214 -VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 249
Cdd:PTZ00421 230 gCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPF 266
|
|
| WD40 |
pfam00400 |
WD domain, G-beta repeat; |
104-142 |
1.93e-08 |
|
WD domain, G-beta repeat;
Pssm-ID: 459801 [Multi-domain] Cd Length: 39 Bit Score: 49.65 E-value: 1.93e-08
10 20 30
....*....|....*....|....*....|....*....
gi 7243701 104 GKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKVWE 142
Cdd:pfam00400 1 GKLLKTLEGHTGSVTSLAFSPDGKLLASGSDDGTVKVWD 39
|
|
| WD40 |
pfam00400 |
WD domain, G-beta repeat; |
63-99 |
2.70e-08 |
|
WD domain, G-beta repeat;
Pssm-ID: 459801 [Multi-domain] Cd Length: 39 Bit Score: 49.27 E-value: 2.70e-08
10 20 30
....*....|....*....|....*....|....*..
gi 7243701 63 TLKFTLAGHTKAVSAVKFSPNGEWLASSSADKLIKIW 99
Cdd:pfam00400 2 KLLKTLEGHTGSVTSLAFSPDGKLLASGSDDGTVKVW 38
|
|
| WD40 |
smart00320 |
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ... |
61-99 |
4.33e-08 |
|
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Pssm-ID: 197651 [Multi-domain] Cd Length: 40 Bit Score: 48.85 E-value: 4.33e-08
10 20 30
....*....|....*....|....*....|....*....
gi 7243701 61 NYTLKFTLAGHTKAVSAVKFSPNGEWLASSSADKLIKIW 99
Cdd:smart00320 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39
|
|
| NBCH_WD40 |
pfam20426 |
Neurobeachin beta propeller domain; This entry represents the beta propeller domain found at ... |
103-344 |
1.21e-07 |
|
Neurobeachin beta propeller domain; This entry represents the beta propeller domain found at the C-terminus of neurobeachin-like proteins.
Pssm-ID: 466575 [Multi-domain] Cd Length: 350 Bit Score: 52.77 E-value: 1.21e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7243701 103 DGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKVWELSTGKSLKTLKGHSNYVFccnfnPQSNLIVSGSfdeSVRI 182
Cdd:pfam20426 113 DGRMVQSIRQHKDVVSCVAVTSDGSILATGSYDTTVMVWEVLRGRSSEKRSRNTQTEF-----PRKDHVIAET---PFHI 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7243701 183 wdvrtgkclktLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAtlD 262
Cdd:pfam20426 185 -----------LCGHDDIITCLYVSVELDIVISGSKDGTCIFHTLREGRYVRSIRHPSGCPLSKLVASRHGRIVLYA--D 251
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7243701 263 NTLKLWDYS-KGKCLKTYT--GHKNekyCIfaNFSvTGGKWIVSGSEDNMVYIWNLQSKEVVQKLQGHTDTVLCTACHPT 339
Cdd:pfam20426 252 DDLSLHLYSiNGKHIASSEsnGRLN---CI--ELS-SCGEFLVCAGDQGQIVVRSMNSLEVVRRYNGIGKIITSLTVTPE 325
|
....*
gi 7243701 340 ENIIA 344
Cdd:pfam20426 326 ECFLA 330
|
|
| PTZ00420 |
PTZ00420 |
coronin; Provisional |
110-189 |
1.28e-06 |
|
coronin; Provisional
Pssm-ID: 240412 [Multi-domain] Cd Length: 568 Bit Score: 49.95 E-value: 1.28e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7243701 110 ISGHKLGISDVAWSS-DSRLLVSGSDDKTLKVWEL----STGKSLK----TLKGHSNYVFCCNFNPQSNLIV-SGSFDES 179
Cdd:PTZ00420 70 LKGHTSSILDLQFNPcFSEILASGSEDLTIRVWEIphndESVKEIKdpqcILKGHKKKISIIDWNPMNYYIMcSSGFDSF 149
|
90
....*....|
gi 7243701 180 VRIWDVRTGK 189
Cdd:PTZ00420 150 VNIWDIENEK 159
|
|
| YncE |
COG3391 |
DNA-binding beta-propeller fold protein YncE [General function prediction only]; |
88-220 |
9.77e-06 |
|
DNA-binding beta-propeller fold protein YncE [General function prediction only];
Pssm-ID: 442618 [Multi-domain] Cd Length: 237 Bit Score: 46.23 E-value: 9.77e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7243701 88 ASSSADKLIKIWGAYDGKFEKTISGHKlGISDVAWSSD-SRLLVSGSDDKTLKVWELSTGKSLKTLKGhSNYVFCCNFNP 166
Cdd:COG3391 84 VANSGSGRVSVIDLATGKVVATIPVGG-GPRGLAVDPDgGRLYVADSGNGRVSVIDTATGKVVATIPV-GAGPHGIAVDP 161
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 7243701 167 QSN-LIVSGSFDES----VRIWDVRTGKCLKTLPAHSDPVsAVHFNRDGS-LIVSSSYDG 220
Cdd:COG3391 162 DGKrLYVANSGSNTvsviVSVIDTATGKVVATIPVGGGPV-GVAVSPDGRrLYVANRGSN 220
|
|
| CDC55 |
COG5170 |
Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]; |
113-308 |
1.19e-05 |
|
Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms];
Pssm-ID: 227498 [Multi-domain] Cd Length: 460 Bit Score: 46.95 E-value: 1.19e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7243701 113 HKLGISDVAWSSDSRLLVSgSDDKTLKVWELSTGK---SLKTLKGH--SNYVFCCN---FNPQ-SNLIVSGSFDESVRIW 183
Cdd:COG5170 171 HPYHINSISFNSDKETLLS-ADDLRINLWNLEIIDgsfNIVDIKPHnmEELTEVITsaeFHPEmCNVFMYSSSKGEIKLN 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7243701 184 DVR-TGKCL---KTLPAHSDPVSAVHFnrdgSLIVSSsydglcriwdtasgqclktlidddnppVSFVKFSPNGKYILAA 259
Cdd:COG5170 250 DLRqSALCDnskKLFELTIDGVDVDFF----EEIVSS---------------------------ISDFKFSDNGRYILSR 298
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 7243701 260 TLdNTLKLWDYSKGK-CLKTYTGHKN---------EKYCIFANFSVT---GGKWIVSGSEDN 308
Cdd:COG5170 299 DY-LTVKIWDVNMAKnPIKTIPMHCDlmdelndvyENDAIFDKFEISfsgDDKHVLSGSYSN 359
|
|
| WD40 |
smart00320 |
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ... |
317-358 |
2.18e-05 |
|
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Pssm-ID: 197651 [Multi-domain] Cd Length: 40 Bit Score: 41.14 E-value: 2.18e-05
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 7243701 317 SKEVVQKLQGHTDTVLCTACHPTENIIASAAleNDKTIKLWK 358
Cdd:smart00320 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGS--DDGTIKLWD 40
|
|
| PTZ00420 |
PTZ00420 |
coronin; Provisional |
152-226 |
5.60e-05 |
|
coronin; Provisional
Pssm-ID: 240412 [Multi-domain] Cd Length: 568 Bit Score: 44.94 E-value: 5.60e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7243701 152 LKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVRTG----------KCLktLPAHSDPVSAVHFNRDGSLIV-SSSYD 219
Cdd:PTZ00420 70 LKGHTSSILDLQFNPcFSEILASGSEDLTIRVWEIPHNdesvkeikdpQCI--LKGHKKKISIIDWNPMNYYIMcSSGFD 147
|
....*..
gi 7243701 220 GLCRIWD 226
Cdd:PTZ00420 148 SFVNIWD 154
|
|
| WD40 |
pfam00400 |
WD domain, G-beta repeat; |
273-314 |
9.18e-05 |
|
WD domain, G-beta repeat;
Pssm-ID: 459801 [Multi-domain] Cd Length: 39 Bit Score: 39.25 E-value: 9.18e-05
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 7243701 273 GKCLKTYTGHKNEKYCIFANFSvtgGKWIVSGSEDNMVYIWN 314
Cdd:pfam00400 1 GKLLKTLEGHTGSVTSLAFSPD---GKLLASGSDDGTVKVWD 39
|
|
| ANAPC4_WD40 |
pfam12894 |
Anaphase-promoting complex subunit 4 WD40 domain; Apc4 contains an N-terminal propeller-shaped ... |
120-207 |
9.38e-05 |
|
Anaphase-promoting complex subunit 4 WD40 domain; Apc4 contains an N-terminal propeller-shaped WD40 domain.The N-terminus of Afi1 serves to stabilize the union between Apc4 and Apc5, both of which lie towards the bottom-front of the APC,
Pssm-ID: 403945 [Multi-domain] Cd Length: 91 Bit Score: 40.72 E-value: 9.38e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7243701 120 VAWSSDSRLLVSGSDDKTL--------KVWELSTGKslktlkgHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCL 191
Cdd:pfam12894 1 MSWCPTMDLIALATEDGELllhrlnwqRVWTLSPDK-------EDLEVTSLAWRPDGKLLAVGYSDGTVRLLDAENGKIV 73
|
90
....*....|....*.
gi 7243701 192 KTLPAHSDPVSAVHFN 207
Cdd:pfam12894 74 HHFSAGSDLITCLGWG 89
|
|
| WD40 |
smart00320 |
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ... |
229-269 |
1.11e-04 |
|
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Pssm-ID: 197651 [Multi-domain] Cd Length: 40 Bit Score: 39.22 E-value: 1.11e-04
10 20 30 40
....*....|....*....|....*....|....*....|.
gi 7243701 229 SGQCLKTLIDDDNPpVSFVKFSPNGKYILAATLDNTLKLWD 269
Cdd:smart00320 1 SGELLKTLKGHTGP-VTSVAFSPDGKYLASGSDDGTIKLWD 40
|
|
| WD40 |
pfam00400 |
WD domain, G-beta repeat; |
230-269 |
1.77e-04 |
|
WD domain, G-beta repeat;
Pssm-ID: 459801 [Multi-domain] Cd Length: 39 Bit Score: 38.48 E-value: 1.77e-04
10 20 30 40
....*....|....*....|....*....|....*....|
gi 7243701 230 GQCLKTLIDDDNPpVSFVKFSPNGKYILAATLDNTLKLWD 269
Cdd:pfam00400 1 GKLLKTLEGHTGS-VTSLAFSPDGKLLASGSDDGTVKVWD 39
|
|
| YvrE |
COG3386 |
Sugar lactone lactonase YvrE [Carbohydrate transport and metabolism]; Sugar lactone lactonase ... |
164-253 |
2.43e-04 |
|
Sugar lactone lactonase YvrE [Carbohydrate transport and metabolism]; Sugar lactone lactonase YvrE is part of the Pathway/BioSystem: Non-phosphorylated Entner-Doudoroff pathway
Pssm-ID: 442613 [Multi-domain] Cd Length: 266 Bit Score: 42.19 E-value: 2.43e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7243701 164 FNPQSNLIVSGSFDESVRIWDVRTGKcLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRiWDTASGQcLKTLIDDDNPP 243
Cdd:COG3386 15 WDPDGRLYWVDIPGGRIHRYDPDGGA-VEVFAEPSGRPNGLAFDPDGRLLVADHGRGLVR-FDPADGE-VTVLADEYGKP 91
|
90
....*....|...
gi 7243701 244 VSF---VKFSPNG 253
Cdd:COG3386 92 LNRpndGVVDPDG 104
|
|
| WD40 |
smart00320 |
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ... |
272-314 |
3.62e-04 |
|
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Pssm-ID: 197651 [Multi-domain] Cd Length: 40 Bit Score: 37.68 E-value: 3.62e-04
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 7243701 272 KGKCLKTYTGHKNEKYCIFANFSvtgGKWIVSGSEDNMVYIWN 314
Cdd:smart00320 1 SGELLKTLKGHTGPVTSVAFSPD---GKYLASGSDDGTIKLWD 40
|
|
| WD40 |
pfam00400 |
WD domain, G-beta repeat; |
318-357 |
4.18e-04 |
|
WD domain, G-beta repeat;
Pssm-ID: 459801 [Multi-domain] Cd Length: 39 Bit Score: 37.32 E-value: 4.18e-04
10 20 30 40
....*....|....*....|....*....|....*....|
gi 7243701 318 KEVVQKLQGHTDTVLCTACHPTENIIASAAleNDKTIKLW 357
Cdd:pfam00400 1 GKLLKTLEGHTGSVTSLAFSPDGKLLASGS--DDGTVKVW 38
|
|
| TolB |
COG0823 |
Periplasmic component TolB of the Tol biopolymer transport system [Intracellular trafficking, ... |
128-260 |
9.41e-04 |
|
Periplasmic component TolB of the Tol biopolymer transport system [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440585 [Multi-domain] Cd Length: 158 Bit Score: 39.27 E-value: 9.41e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7243701 128 LLVSGSDDKTLKVWELS-TGKSLKTLKGHSNYVFCCNFNPQSNLIV-----SGSFDesVRIWDVRTGKcLKTLPAHSDPV 201
Cdd:COG0823 1 LAFTLSRDGNSDIYVVDlDGGEPRRLTNSPGIDTSPAWSPDGRRIAftsdrGGGPQ--IYVVDADGGE-PRRLTFGGGYN 77
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 7243701 202 SAVHFNRDGSLIVSSSY-DGLCRIW--DTASGQcLKTLIDDDNPPVsfvkFSPNGKYILAAT 260
Cdd:COG0823 78 ASPSWSPDGKRLAFVSRsDGRFDIYvlDLDGGA-PRRLTDGPGSPS----WSPDGRRIVFSS 134
|
|
| YvrE |
COG3386 |
Sugar lactone lactonase YvrE [Carbohydrate transport and metabolism]; Sugar lactone lactonase ... |
120-271 |
1.17e-03 |
|
Sugar lactone lactonase YvrE [Carbohydrate transport and metabolism]; Sugar lactone lactonase YvrE is part of the Pathway/BioSystem: Non-phosphorylated Entner-Doudoroff pathway
Pssm-ID: 442613 [Multi-domain] Cd Length: 266 Bit Score: 40.26 E-value: 1.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7243701 120 VAWSSDSRLLVSGSDDKTLKVWELSTGKsLKTLKGHSNYVFCCNFNPQSNLIVsGSFDESVRIWDVRTGKcLKTLPAHSD 199
Cdd:COG3386 13 PVWDPDGRLYWVDIPGGRIHRYDPDGGA-VEVFAEPSGRPNGLAFDPDGRLLV-ADHGRGLVRFDPADGE-VTVLADEYG 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7243701 200 PvSAVHFN-----RDGSLIVSSSYD-----GLCRIwdTASGQcLKTLIDDdnppVSF---VKFSPNGKY-ILAATLDNTL 265
Cdd:COG3386 90 K-PLNRPNdgvvdPDGRLYFTDMGEylptgALYRV--DPDGS-LRVLADG----LTFpngIAFSPDGRTlYVADTGAGRI 161
|
....*.
gi 7243701 266 KLWDYS 271
Cdd:COG3386 162 YRFDLD 167
|
|
| TolB |
COG0823 |
Periplasmic component TolB of the Tol biopolymer transport system [Intracellular trafficking, ... |
170-268 |
1.39e-03 |
|
Periplasmic component TolB of the Tol biopolymer transport system [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440585 [Multi-domain] Cd Length: 158 Bit Score: 38.88 E-value: 1.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7243701 170 LIVSGSFDESVRIW--DVRTGKcLKTLPAHSDPVSAVHFNRDGSLIV-SSSYDGLCRIW--DTASGQclKTLIDDDNPPV 244
Cdd:COG0823 1 LAFTLSRDGNSDIYvvDLDGGE-PRRLTNSPGIDTSPAWSPDGRRIAfTSDRGGGPQIYvvDADGGE--PRRLTFGGGYN 77
|
90 100
....*....|....*....|....*
gi 7243701 245 SFVKFSPNGKYIL-AATLDNTLKLW 268
Cdd:COG0823 78 ASPSWSPDGKRLAfVSRSDGRFDIY 102
|
|
| NBCH_WD40 |
pfam20426 |
Neurobeachin beta propeller domain; This entry represents the beta propeller domain found at ... |
166-230 |
1.54e-03 |
|
Neurobeachin beta propeller domain; This entry represents the beta propeller domain found at the C-terminus of neurobeachin-like proteins.
Pssm-ID: 466575 [Multi-domain] Cd Length: 350 Bit Score: 40.06 E-value: 1.54e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 7243701 166 PQSN-LIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 230
Cdd:pfam20426 91 PSENfLISCGNWENSFQVISLNDGRMVQSIRQHKDVVSCVAVTSDGSILATGSYDTTVMVWEVLRG 156
|
|
| eIF2A |
pfam08662 |
Eukaryotic translation initiation factor eIF2A; This is a family of eukaryotic translation ... |
103-271 |
2.21e-03 |
|
Eukaryotic translation initiation factor eIF2A; This is a family of eukaryotic translation initiation factors.
Pssm-ID: 462552 [Multi-domain] Cd Length: 194 Bit Score: 38.79 E-value: 2.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7243701 103 DGKFEKTISGHKLG-ISDVAWSSDSR--LLVSGSDDKTLKVWELSTGKSLKTLKGHSNYVFccnFNPQSNLIVSGSFDE- 178
Cdd:pfam08662 47 TGGPDCVVELDKEGpIHDVAWSPNGKefAVIYGYMPAKVSFFDLKGNVIHSFGEQPRNTIF---WSPFGRLVLLAGFGNl 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7243701 179 --SVRIWDVRTGKCLKTlpahsdpvsAVHFNrdgslivsssydglcriwdtasgqclktlidddnppVSFVKFSPNGKYI 256
Cdd:pfam08662 124 agDIEFWDVVNKKKIAT---------AEASN------------------------------------ATLCEWSPDGRYF 158
|
170 180
....*....|....*....|.
gi 7243701 257 LAATL------DNTLKLWDYS 271
Cdd:pfam08662 159 LTATTaprlrvDNGFKIWHYN 179
|
|
| COG5354 |
COG5354 |
Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]; |
235-321 |
2.26e-03 |
|
Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only];
Pssm-ID: 227657 [Multi-domain] Cd Length: 561 Bit Score: 39.86 E-value: 2.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7243701 235 TLIDDDNPPVSFVKFSPNGKYILAATLDNtLKLWDY-SKGKCLKTYtgHKNEKYCIFAnfsvTGGKWIVSGS-------- 305
Cdd:COG5354 26 TRFESENWPVAYVSESPLGTYLFSEHAAG-VECWGGpSKAKLVRFR--HPDVKYLDFS----PNEKYLVTWSrepiiepe 98
|
90 100
....*....|....*....|...
gi 7243701 306 -------EDNMVYIWNLQSKEVV 321
Cdd:COG5354 99 ieispftSKNNVFVWDIASGMIV 121
|
|
| COG4946 |
COG4946 |
Uncharacterized N-terminal domain of tricorn protease, contains WD40 repeats [Function unknown] ... |
65-148 |
2.96e-03 |
|
Uncharacterized N-terminal domain of tricorn protease, contains WD40 repeats [Function unknown];
Pssm-ID: 443973 [Multi-domain] Cd Length: 1072 Bit Score: 39.64 E-value: 2.96e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7243701 65 KFTLAGHTKaVSAVKFSPNGEWLASSSADKLIKIwgaYD---GKfEKTI--SGHKLGISDVAWSSDSRLLV-SGSDDKTL 138
Cdd:COG4946 382 QLTLGDLGR-VFNPVWSPDGKKIAFTDNRGRLWV---VDlasGK-VRKVdtDGYGDGISDLAWSPDSKWLAySKPGPNQL 456
|
90
....*....|...
gi 7243701 139 ---KVWELSTGKS 148
Cdd:COG4946 457 sqiFLYDVETGKT 469
|
|
| ANAPC4_WD40 |
pfam12894 |
Anaphase-promoting complex subunit 4 WD40 domain; Apc4 contains an N-terminal propeller-shaped ... |
65-125 |
3.49e-03 |
|
Anaphase-promoting complex subunit 4 WD40 domain; Apc4 contains an N-terminal propeller-shaped WD40 domain.The N-terminus of Afi1 serves to stabilize the union between Apc4 and Apc5, both of which lie towards the bottom-front of the APC,
Pssm-ID: 403945 [Multi-domain] Cd Length: 91 Bit Score: 36.49 E-value: 3.49e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 7243701 65 KFTLAGHTKAVSAVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 125
Cdd:pfam12894 31 TLSPDKEDLEVTSLAWRPDGKLLAVGYSDGTVRLLDAENGKIVHHFSAGSDLITCLGWGEN 91
|
|
| COG4946 |
COG4946 |
Uncharacterized N-terminal domain of tricorn protease, contains WD40 repeats [Function unknown] ... |
78-257 |
3.91e-03 |
|
Uncharacterized N-terminal domain of tricorn protease, contains WD40 repeats [Function unknown];
Pssm-ID: 443973 [Multi-domain] Cd Length: 1072 Bit Score: 39.25 E-value: 3.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7243701 78 VKFSPNGEWLASSS-ADKLIKIW--GAYDGKFEKTISghKLGISDV---AWSSDSRLLVSGSDDKTLKVWELSTGKS--- 148
Cdd:COG4946 348 PAWSPDGKSIAYFSdASGEYELYiaPADGSGEPKQLT--LGDLGRVfnpVWSPDGKKIAFTDNRGRLWVVDLASGKVrkv 425
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7243701 149 LKTLKGHSNYVFccNFNPQSNLIV----SGSFDESVRIWDVRTGkclKTLPAhSDPVSavhfnrdgslivsssydglcri 224
Cdd:COG4946 426 DTDGYGDGISDL--AWSPDSKWLAyskpGPNQLSQIFLYDVETG---KTVQL-TDGRY---------------------- 477
|
170 180 190
....*....|....*....|....*....|...
gi 7243701 225 wdtasgqclktliDDDNPpvsfvKFSPNGKYIL 257
Cdd:COG4946 478 -------------DDGSP-----AFSPDGKYLY 492
|
|
| COG4946 |
COG4946 |
Uncharacterized N-terminal domain of tricorn protease, contains WD40 repeats [Function unknown] ... |
209-274 |
6.87e-03 |
|
Uncharacterized N-terminal domain of tricorn protease, contains WD40 repeats [Function unknown];
Pssm-ID: 443973 [Multi-domain] Cd Length: 1072 Bit Score: 38.48 E-value: 6.87e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 7243701 209 DGSLIVSSSYDGlcRIW--DTASGQClkTLIDDD--NPPVSFVKFSPNGKYIL-AATLDNTL---KLWDYSKGK 274
Cdd:COG4946 399 DGKKIAFTDNRG--RLWvvDLASGKV--RKVDTDgyGDGISDLAWSPDSKWLAySKPGPNQLsqiFLYDVETGK 468
|
|
| COG4946 |
COG4946 |
Uncharacterized N-terminal domain of tricorn protease, contains WD40 repeats [Function unknown] ... |
248-322 |
9.23e-03 |
|
Uncharacterized N-terminal domain of tricorn protease, contains WD40 repeats [Function unknown];
Pssm-ID: 443973 [Multi-domain] Cd Length: 1072 Bit Score: 38.10 E-value: 9.23e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 7243701 248 KFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYcIFANFSvTGGKWIV-SGSEDNM---VYIWNLQSKEVVQ 322
Cdd:COG4946 395 VWSPDGKKIAFTDNRGRLWVVDLASGKVRKVDTDGYGDGI-SDLAWS-PDSKWLAySKPGPNQlsqIFLYDVETGKTVQ 471
|
|
|