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Conserved domains on  [gi|9948375|gb|AAG05727|]
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probable binding-protein-dependent maltose/mannitol transport protein [Pseudomonas aeruginosa PAO1]

Protein Classification

carbohydrate ABC transporter permease( domain architecture ID 10003067)

carbohydrate ABC transporter permease is the transmembrane (TM) subunit of a periplasmic binding protein (PBP)-dependent ATP-binding cassette (ABC) transporter responsible for the translocation across the membrane of one or more from a variety of carbohydrate substrates including trehalose, lactose, arabinose, and maltodextrin

Gene Ontology:  GO:0042626|GO:0140359|GO:0008643|GO:0055085
PubMed:  25750732|24638992|30626703
TCDB:  3.A.1.1.-

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
27-304 1.86e-76

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


:

Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 235.80  E-value: 1.86e-76
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9948375   27 GWLLVSPSVALLLLWMIVPLGMTLYFSLIRYNLLYPGENaFVGLENFTFFVTDAGFLPGALNTLLLVGSVLAISVAFGVL 106
Cdd:COG1175  20 AYLFLLPALLLLLVFVLYPLLYTLYLSFTDWNLLGPPPE-FVGLDNYARLFTDPRFWNALGNTLLFTVVSVPLQLVLGLL 98

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9948375  107 IAALLEAGeFFGRGAVRVLLISPFFIMPTVSALLWKnLIFHPVSGILAAVWRLFGAEPVDWLA--HYPLLSIILIVSWQW 184
Cdd:COG1175  99 LALLLNRK-LRGRGFFRTLFFLPWVISPVVVALIWK-WLFNPDYGLLNALLGALGLEPINWLGdpSLALPAVIIVTVWKG 176

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9948375  185 LPFAILILMTAMQSLDQEQKEAARLDGAGPLAIFWHLTLPHLARPIAVVLMIETIFLLSVFAEIFTTTSGGPGYESTNLA 264
Cdd:COG1175 177 TGFNMLIFLAGLQSIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGALQVFDLVYVLTGGGPGNSTTTLV 256

                       250       260       270       280
                ....*....|....*....|....*....|....*....|
gi 9948375  265 YLIYNQALLQFDVGMASAGGLIAVLIANIAAIVLVRMIGK 304
Cdd:COG1175 257 LYIYQTAFQQFDFGYASAIAVVLFLIILVLTLLQLRLLRR 296
 
Name Accession Description Interval E-value
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
27-304 1.86e-76

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 235.80  E-value: 1.86e-76
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9948375   27 GWLLVSPSVALLLLWMIVPLGMTLYFSLIRYNLLYPGENaFVGLENFTFFVTDAGFLPGALNTLLLVGSVLAISVAFGVL 106
Cdd:COG1175  20 AYLFLLPALLLLLVFVLYPLLYTLYLSFTDWNLLGPPPE-FVGLDNYARLFTDPRFWNALGNTLLFTVVSVPLQLVLGLL 98

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9948375  107 IAALLEAGeFFGRGAVRVLLISPFFIMPTVSALLWKnLIFHPVSGILAAVWRLFGAEPVDWLA--HYPLLSIILIVSWQW 184
Cdd:COG1175  99 LALLLNRK-LRGRGFFRTLFFLPWVISPVVVALIWK-WLFNPDYGLLNALLGALGLEPINWLGdpSLALPAVIIVTVWKG 176

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9948375  185 LPFAILILMTAMQSLDQEQKEAARLDGAGPLAIFWHLTLPHLARPIAVVLMIETIFLLSVFAEIFTTTSGGPGYESTNLA 264
Cdd:COG1175 177 TGFNMLIFLAGLQSIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGALQVFDLVYVLTGGGPGNSTTTLV 256

                       250       260       270       280
                ....*....|....*....|....*....|....*....|
gi 9948375  265 YLIYNQALLQFDVGMASAGGLIAVLIANIAAIVLVRMIGK 304
Cdd:COG1175 257 LYIYQTAFQQFDFGYASAIAVVLFLIILVLTLLQLRLLRR 296
PRK10561 PRK10561
sn-glycerol-3-phosphate ABC transporter permease UgpA;
29-302 2.97e-18

sn-glycerol-3-phosphate ABC transporter permease UgpA;


Pssm-ID: 182550 [Multi-domain]  Cd Length: 280  Bit Score: 82.95  E-value: 2.97e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9948375    29 LLVSPSVALLLLWMIVPLGMTLYFSLIRYNLlYPGENAFVGLENFTFFVTDAGFLPGALNTLLLVGSVLAISVAFGVLIA 108
Cdd:PRK10561   1 LLVAPQLIITVIFFIWPAGEALWYSLQSVDP-FGFSSQFVGLDNFVALFHDSYYLDSFWTTIKFSTLVTVSGLLVSLFFA 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9948375   109 ALLEAgEFFGRGAVRVLLISPFFIMPTVSALLWKnLIFHPVSGILAAVWRLFGaepVDW-LAHYPLLSIILIV---SWQW 184
Cdd:PRK10561  80 ALVDY-VVRGSRFYQTLMLLPYAVAPAVAAVLWI-FLFNPGRGLITHFLAEFG---YDWnHAQNSGQAMFLVVfasVWKQ 154

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9948375   185 LPFAILILMTAMQSLDQEQKEAARLDGAGPLAIFWHLTLPHLARPIAVVLMIETIF-LLSVFAEIFTTTSGGPGYESTNL 263
Cdd:PRK10561 155 ISYNFLFFFAALQSIPRSLVEAAAIDGAGPIRRFFKLALPLIAPVSFFLLVVNLVYaFFDTFPVIDAATSGGPVQATTTL 234

                        250       260       270
                 ....*....|....*....|....*....|....*....
gi 9948375   264 AYLIYNQALLQFDVGMASAGGLIAVLIANIAAIVLVRMI 302
Cdd:PRK10561 235 IYKIYREGFTGLDLSSSAAQSVVLMFLVIVLTVVQFRYV 273
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 36-224 2.15e-12

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 67.40  E-value: 2.15e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9948375     36 ALLLLWMIVPLGMTLYFSLIryNLLYPGENAFVGLENFTFFVTDAGFLPGALNTLLLVGSVLAISVAFGVLIAALLEAGE 115
Cdd:TIGR03262   8 AGMILALLLFLLLPLLALLT--KSVYDSDGDFIGLANFAEYFATPGLLQSLGNSLTVSAIVTAIVVPLAFAFAYALTRSR 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9948375    116 FFGRGAVRVLLISPFF---IMPTVSALLWKNlifhpVSGILAAvwrLFGAEPVdwlahYPLLSIILIVSWQWLPFAILIL 192
Cdd:TIGR03262  86 IPGKGAFRLVALLPLLapsLLPAISLIYLFG-----NQGLLKG---LLGGFSI-----YGFWGIVIGEVFYTFPHALMIL 152

                         170       180       190
                  ....*....|....*....|....*....|..
gi 9948375    193 MTAMQSLDQEQKEAARLDGAGPLAIFWHLTLP 224
Cdd:TIGR03262 153 VTALSLADGRLYEAARAMGASPWRTFFTVTLP 184
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 86-290 2.25e-10

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 58.83  E-value: 2.25e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9948375   86 ALNTLLLVGSVLAISVAFGVLIAALLEAGEFFGRGAVRVLLISPFFImptvsallwknlifhPVSGILAAVWRLFGAEPV 165
Cdd:cd06261   1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSL---------------PSLVLGLLLVLLFGVLLG 65

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9948375  166 DWLAHYPLLSIILIVSWQWLPFAILILMTAMQSLDQEQKEAARLDGAGPLAIFWHLTLPHLARPIAVVLMIETIFLLSVF 245
Cdd:cd06261  66 WGILPGLGLPALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEF 145

                       170       180       190       200
                ....*....|....*....|....*....|....*....|....*
gi 9948375  246 AEIFTTTSGGPGYesTNLAYLIYNQALLQFDVGMASAGGLIAVLI 290
Cdd:cd06261 146 ALVSFLGGGEAPG--PGTGLLLIFAILFPGDLGVAAAVALILLLL 188
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 169-304 5.52e-08

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 51.92  E-value: 5.52e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9948375    169 AHYPLLSIILIVSWQWLPFAILILMTAMQSLDQEQKEAARLDGAGPLAIFWHLTLPHLARPIAVVLMIETIFLLSVFAEI 248
Cdd:pfam00528  48 LGHGILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLL 127

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 9948375    249 FTTTSGGPGYESTNLAYLIYNQALLQFdvgmASAGGLIAVLIANIAAIVLVRMIGK 304
Cdd:pfam00528 128 EFLGSWPGLGLLLIEAILGYDYPEIQG----PVLAAALILLLLNLLVDILQRLLDP 179
 
Name Accession Description Interval E-value
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
27-304 1.86e-76

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 235.80  E-value: 1.86e-76
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9948375   27 GWLLVSPSVALLLLWMIVPLGMTLYFSLIRYNLLYPGENaFVGLENFTFFVTDAGFLPGALNTLLLVGSVLAISVAFGVL 106
Cdd:COG1175  20 AYLFLLPALLLLLVFVLYPLLYTLYLSFTDWNLLGPPPE-FVGLDNYARLFTDPRFWNALGNTLLFTVVSVPLQLVLGLL 98

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9948375  107 IAALLEAGeFFGRGAVRVLLISPFFIMPTVSALLWKnLIFHPVSGILAAVWRLFGAEPVDWLA--HYPLLSIILIVSWQW 184
Cdd:COG1175  99 LALLLNRK-LRGRGFFRTLFFLPWVISPVVVALIWK-WLFNPDYGLLNALLGALGLEPINWLGdpSLALPAVIIVTVWKG 176

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9948375  185 LPFAILILMTAMQSLDQEQKEAARLDGAGPLAIFWHLTLPHLARPIAVVLMIETIFLLSVFAEIFTTTSGGPGYESTNLA 264
Cdd:COG1175 177 TGFNMLIFLAGLQSIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGALQVFDLVYVLTGGGPGNSTTTLV 256

                       250       260       270       280
                ....*....|....*....|....*....|....*....|
gi 9948375  265 YLIYNQALLQFDVGMASAGGLIAVLIANIAAIVLVRMIGK 304
Cdd:COG1175 257 LYIYQTAFQQFDFGYASAIAVVLFLIILVLTLLQLRLLRR 296
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 27-304 3.27e-26

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 104.84  E-value: 3.27e-26
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9948375   27 GWLLVSPSVALLLLWMIVPLGMTLYFSLIRYNLLYPGENAFvGLENFTFFVTDAGFLPGALNTLLLVGSVLAISVAFGVL 106
Cdd:COG1176  11 PLLLLLPALLWLLLFFVLPLLLLLVYSFTTRDPYGGVVPGF-TLENYARLFTDPLYLKVLLRTLWIALLTTLICLLLGYP 89

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9948375  107 IAALLEAGEFFGRGAVRVLLISPFFIMPTVSALLWKNLIFHpvSGILAAVWRLFG--AEPVDWLahYPLLSIILIVSWQW 184
Cdd:COG1176  90 IAYFLARAPPRWRNLLLLLVILPFWTSFLVRTYAWIVLLGR--NGLLNSLLLALGliDEPLRLL--YTEFAVVIGLVYVY 165

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9948375  185 LPFAILILMTAMQSLDQEQKEAARLDGAGPLAIFWHLTLPHLARPIAVVLMIETIFLLSVFAeiftTTS--GGPgyESTN 262
Cdd:COG1176 166 LPFMVLPLYAALEKIDPSLLEAARDLGASPWQTFRRVILPLSLPGIIAGSLLVFIPALGAFV----TPAllGGG--KVLM 239

                       250       260       270       280
                ....*....|....*....|....*....|....*....|..
gi 9948375  263 LAYLIYNQALLQFDVGMASAGGLIAVLIANIAAIVLVRMIGK 304
Cdd:COG1176 240 IGNLIYQQFLSALNWPLAAALAVVLLLIVLLVLLLYLRLLRR 281
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
26-304 5.14e-23

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 98.69  E-value: 5.14e-23
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9948375   26 PGWLLVSPSVALLLLWMIVPLGMTLYFSLirynllypgenaFVGLENFTFFVTDAGFLPGALNTLLLVGSVLAISVAFGV 105
Cdd:COG1178   8 RPRLLLLLLALLLALLVLLPLLALLLRAF------------TDGLANFWALLSDPYLWRALGNTLLLALLVTLLSLLLGV 75

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9948375  106 LIAALLEAGEFFGRGAVRVLLISPFFIMPTVSALLWKNLiFHPvSGILAAVWR-LFGAEPVDWlahYPLLSIILIVSWQW 184
Cdd:COG1178  76 PLAWLLARTDFPGRRLLRWLLLLPLALPPYVVALAWIAL-FGP-NGLLNTLLRaLFGLEPPDI---YGLGGIILVLVLFN 150

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9948375  185 LPFAILILMTAMQSLDQEQKEAARLDGAGPLAIFWHLTLPHLARPIAVVLMIETIFLLSVFA--EIFtttsggpGYESTN 262
Cdd:COG1178 151 YPYVYLLLRAALRSIDASLEEAARSLGASPWRAFRRVTLPLLRPAIAAGALLVFLLCLADFGtpLVL-------GGGYTT 223

                       250       260       270       280
                ....*....|....*....|....*....|....*....|..
gi 9948375  263 LAYLIYNQALLQFDVGMASAGGLIAVLIANIAAIVLVRMIGK 304
Cdd:COG1178 224 LTTAIYQAWLGDFDLGAAAALALVLLLLVLLLLLLERRLRRR 265
LplB COG4209
ABC-type polysaccharide transport system, permease component [Carbohydrate transport and ...
 28-292 1.84e-22

ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 443357 [Multi-domain]  Cd Length: 316  Bit Score: 95.16  E-value: 1.84e-22
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9948375   28 WLLVSPSVALLLLWMIVPL-GMTLYFSliRYNLLYP-GENAFVGLENFTFFVTDAGFLPGALNTLLLvgSVLAISVAFGV 105
Cdd:COG4209  30 YLMLLPGLIYLLIFSYLPMyGIVIAFK--DYNPFKGiFGSPWVGLKNFKFLFSSPDFWRVLRNTLLI--SLLKLVFGFPL 105

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9948375  106 LIA-ALL--EAGEFFGRGAVRVLLISPFFIMPTVSALLWKNLiFHPVSGILAAVWRLFGAEPVDWLA---HYPLLsIILI 179
Cdd:COG4209 106 PIIlALLlnELRSKRFKKTVQTISYLPHFLSWVVVAGIVYQF-LSPDTGLVNQLLRALGGEPINFLTepkYFRPI-YVFS 183

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9948375  180 VSWQWLPFAILILMTAMQSLDQEQKEAARLDGAGPLAIFWHLTLPHLaRPIAVVLMIETI-FLLSVFAEIFTTTSGGPGY 258
Cdd:COG4209 184 GIWKEAGWGSIIYLAAITGIDPELYEAAAIDGAGRWQQIWHITLPGI-RPTIVILLILNIgNILNVGFEQIYLLYNPLNY 262

                       250       260       270       280
                ....*....|....*....|....*....|....*....|..
gi 9948375  259 ESTN-LAYLIYNQALLQFDVGMASAGGL-------IAVLIAN 292
Cdd:COG4209 263 STSDvIDTYVYRIGLQNGDYSYATAVGLfksvvglILVLIAN 304
PRK10561 PRK10561
sn-glycerol-3-phosphate ABC transporter permease UgpA;
29-302 2.97e-18

sn-glycerol-3-phosphate ABC transporter permease UgpA;


Pssm-ID: 182550 [Multi-domain]  Cd Length: 280  Bit Score: 82.95  E-value: 2.97e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9948375    29 LLVSPSVALLLLWMIVPLGMTLYFSLIRYNLlYPGENAFVGLENFTFFVTDAGFLPGALNTLLLVGSVLAISVAFGVLIA 108
Cdd:PRK10561   1 LLVAPQLIITVIFFIWPAGEALWYSLQSVDP-FGFSSQFVGLDNFVALFHDSYYLDSFWTTIKFSTLVTVSGLLVSLFFA 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9948375   109 ALLEAgEFFGRGAVRVLLISPFFIMPTVSALLWKnLIFHPVSGILAAVWRLFGaepVDW-LAHYPLLSIILIV---SWQW 184
Cdd:PRK10561  80 ALVDY-VVRGSRFYQTLMLLPYAVAPAVAAVLWI-FLFNPGRGLITHFLAEFG---YDWnHAQNSGQAMFLVVfasVWKQ 154

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9948375   185 LPFAILILMTAMQSLDQEQKEAARLDGAGPLAIFWHLTLPHLARPIAVVLMIETIF-LLSVFAEIFTTTSGGPGYESTNL 263
Cdd:PRK10561 155 ISYNFLFFFAALQSIPRSLVEAAAIDGAGPIRRFFKLALPLIAPVSFFLLVVNLVYaFFDTFPVIDAATSGGPVQATTTL 234

                        250       260       270
                 ....*....|....*....|....*....|....*....
gi 9948375   264 AYLIYNQALLQFDVGMASAGGLIAVLIANIAAIVLVRMI 302
Cdd:PRK10561 235 IYKIYREGFTGLDLSSSAAQSVVLMFLVIVLTVVQFRYV 273
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 35-309 2.71e-15

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 73.99  E-value: 2.71e-15
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9948375   35 VALLLLWMIVPLGMTLYFSLIRYNLLYPGENAFvGLENFTFFVTDAGFLPGALNTLLLVGSVLAISVAFGVLIAALLEAG 114
Cdd:COG1177  13 LALVLLFLYLPILVLVLYSFNDSWFLTFPPEGF-TLRWYAELFSDPRLLDALLNSLLIALLSTLLATVLGTPAALALARY 91

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9948375  115 EFFGRGAVRVLLISPFFIMPTVSAL-LwknLIFHPVSGILAAVWRLfgaepvdWLAHypllsIILIvswqwLPFAILILM 193
Cdd:COG1177  92 RFRGRRLLLALLLLPLVVPGIVLGVaL---LLLFSALGLSGGLWGL-------ILAH-----VVFT-----LPFVVLVVL 151

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9948375  194 TAMQSLDQEQKEAARLDGAGPLAIFWHLTLPHLARPIAVVLMIetIFLLSVFAEIFTTTSGGPGYesTNLAYLIYNQALL 273
Cdd:COG1177 152 ARLQGFDPSLEEAARDLGASPWQTFRRVTLPLIAPGILAGALL--AFTLSFDEFVITLFLAGPGV--TTLPVYIYSMIRR 227

                       250       260       270
                ....*....|....*....|....*....|....*.
gi 9948375  274 QFDvGMASAGGLIAVLIANIAAIVLVRMIGKNLTER 309
Cdd:COG1177 228 GIS-PEINALSTLLILLSLLLLLLAERLRRRGERRR 262
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
28-305 3.85e-14

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 72.50  E-value: 3.85e-14
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9948375   28 WLLVSPSVALLLLWMIVPLGMTLYFSLIRYNllypgeNAFVGLENFTFFVTDAGFLPGALNTLLLVGSVLAISVAFGVLI 107
Cdd:COG1178 288 WLALALCLLLVLLGLLLPLLALLLWSLTKAL------DDNLTLDNYRFVLLDPSLLRALLNSLLLALLAALLAVLLALLL 361

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9948375  108 AALLEAGEFFGRGAVRVLLISPFFIMPTVSALlwknlifhpvsGILaavwrLFGAEPVDWLAHYPLLSIILIVSWQWLPF 187
Cdd:COG1178 362 AYLVRRRRGRLARLLDRLAMLPYAVPGIVLGL-----------GLL-----LLFNRPLPLLLYGTLAILVLAYVVRFLPF 425

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9948375  188 AILILMTAMQSLDQEQKEAARLDGAGPLAIFWHLTLPHLARPIAVVLMIetifllsVFAEIFTTTS-----GGPGYEStn 262
Cdd:COG1178 426 ALRSLEAALAQIDPSLEEAARSLGASPLRTLRRVTLPLLRPGLLAAALL-------VFVTSMKELSatlllRPPGFET-- 496

                       250       260       270       280
                ....*....|....*....|....*....|....*....|...
gi 9948375  263 LAYLIYNQAlLQFDVGMASAGGLIAVLIANIAAIVLVRMIGKN 305
Cdd:COG1178 497 LAVLIYQLA-SSGRYGEAAALALLLVLVSLLPVLLLERLLGRR 538
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 35-307 5.49e-14

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 70.89  E-value: 5.49e-14
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9948375   35 VALLLLWMIVPLGMTLYFSLIRYNLLYPGENAFV----GLENFTFFVTDAGFLPGALNTLLLVGSVLAISVAFGVLIAAL 110
Cdd:COG0395  21 LILLALLFLFPLYWMVVTSFKPPAEIFSGPPSLLpsefTLENYRAAFTDGPFGRYLLNSLIVAVVSTVLSLLLSSLAAYA 100

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9948375  111 LEAGEFFGRGAVRVLLISPFFIMPTVSA----LLWKNLifhpvsgilaavwrlfgaepvDWLAHYPLLSIILIVswQWLP 186
Cdd:COG0395 101 LARFRFRGRKLLFLLILATLMIPGQVLLiplyLLFRQL---------------------GLLNTYWGLILPYLA--FGLP 157

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9948375  187 FAILILMTAMQSLDQEQKEAARLDGAGPLAIFWHLTLPhLARPIAVVLMIETiFLLS----VFAEIFTTTSggpgyESTN 262
Cdd:COG0395 158 FGIFLLRQFFRSIPRELEEAARIDGASEFRIFWRIVLP-LSKPALATVAIFT-FIGAwndfLWPLILLTSP-----DLRT 230

                       250       260       270       280
                ....*....|....*....|....*....|....*....|....*.
gi 9948375  263 LAYLIYN-QALLQFDVGMASAGGLIAVLIANIAAIVLVRMIGKNLT 307
Cdd:COG0395 231 LPVGLASfQGQYGTDWGLLMAAAVIATLPVLILFLFLQRYFVRGLT 276
malF PRK10999
maltose ABC transporter permease MalF;
58-256 1.96e-13

maltose ABC transporter permease MalF;


Pssm-ID: 236816 [Multi-domain]  Cd Length: 520  Bit Score: 70.37  E-value: 1.96e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9948375    58 NLLYPGENAFVGLENFTFFVTDAG----FLPGALNTLLLVGSVLAISVAFGVLIAALLEAGEFFGRGAVRVLLISPFFIM 133
Cdd:PRK10999 255 EKLSPGFTVTIGWKNFTRVFTDEGiqkpFIAIFIWTVVFSLLTVVLTVAVGMVLACLVQWEALKGKAVYRVLLILPYAVP 334

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9948375   134 PTVSALLWKNLI---FHPVSGILAAvwrLFGAEPvDWLAHyPLL--SIILIV-SWQWLPFAILILMTAMQSLDQEQKEAA 207
Cdd:PRK10999 335 SFISILIFKGLFnqsFGEINMMLSA---LFGIKP-AWFSD-PTLakTMILIVnTWLGYPYMMILCMGLLKAIPDDLYEAS 409

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*....
gi 9948375   208 RLDGAGPLAIFWHLTLPHLARPIAVVLMIETIFLLSVFAEIFTTTSGGP 256
Cdd:PRK10999 410 AMDGAGPFQNFFKITLPLLIKPLTPLMIASFAFNFNNFVLIQLLTNGGP 458
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 36-224 2.15e-12

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 67.40  E-value: 2.15e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9948375     36 ALLLLWMIVPLGMTLYFSLIryNLLYPGENAFVGLENFTFFVTDAGFLPGALNTLLLVGSVLAISVAFGVLIAALLEAGE 115
Cdd:TIGR03262   8 AGMILALLLFLLLPLLALLT--KSVYDSDGDFIGLANFAEYFATPGLLQSLGNSLTVSAIVTAIVVPLAFAFAYALTRSR 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9948375    116 FFGRGAVRVLLISPFF---IMPTVSALLWKNlifhpVSGILAAvwrLFGAEPVdwlahYPLLSIILIVSWQWLPFAILIL 192
Cdd:TIGR03262  86 IPGKGAFRLVALLPLLapsLLPAISLIYLFG-----NQGLLKG---LLGGFSI-----YGFWGIVIGEVFYTFPHALMIL 152

                         170       180       190
                  ....*....|....*....|....*....|..
gi 9948375    193 MTAMQSLDQEQKEAARLDGAGPLAIFWHLTLP 224
Cdd:TIGR03262 153 VTALSLADGRLYEAARAMGASPWRTFFTVTLP 184
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 86-290 2.25e-10

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 58.83  E-value: 2.25e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9948375   86 ALNTLLLVGSVLAISVAFGVLIAALLEAGEFFGRGAVRVLLISPFFImptvsallwknlifhPVSGILAAVWRLFGAEPV 165
Cdd:cd06261   1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSL---------------PSLVLGLLLVLLFGVLLG 65

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9948375  166 DWLAHYPLLSIILIVSWQWLPFAILILMTAMQSLDQEQKEAARLDGAGPLAIFWHLTLPHLARPIAVVLMIETIFLLSVF 245
Cdd:cd06261  66 WGILPGLGLPALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEF 145

                       170       180       190       200
                ....*....|....*....|....*....|....*....|....*
gi 9948375  246 AEIFTTTSGGPGYesTNLAYLIYNQALLQFDVGMASAGGLIAVLI 290
Cdd:cd06261 146 ALVSFLGGGEAPG--PGTGLLLIFAILFPGDLGVAAAVALILLLL 188
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 40-307 3.68e-09

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 56.30  E-value: 3.68e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9948375   40 LWMIVPLgmtLYFSLIrynLLYP-----GENAFVGLENFTFFVTDAGFLPGALNTLLLVGSVLAISVAFGVLIAALLEAG 114
Cdd:COG0555  11 LTLGLTL---LYLSLI---VLLPlaalvLKAAGLGWAEFWAVLTSPRVLAALKLSLGTALIAALINLVFGLPLAWVLVRY 84

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9948375  115 EFFGRGAVRVLLISPFfIMPTVsallwknlifhpVSGI-LAAvwrLFGAEPV--DWLAH------YPLLSIILIVSWQWL 185
Cdd:COG0555  85 RFPGKRLVDALVDLPF-ALPTA------------VAGIaLLL---LFGPNGWlgQLLAPlgikvaFTPLGIVLAQTFVSL 148

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9948375  186 PFAILILMTAMQSLDQEQKEAARLDGAGPLAIFWHLTLPHLARPIAvvlmieTIFLLSvFAE--------IFttTSGGPG 257
Cdd:COG0555 149 PFVVRTVQPVLEELDPELEEAAATLGASRWQTFRRVILPLLLPALL------TGFALA-FARalgefgavIF--IAGNLP 219

                       250       260       270       280       290
                ....*....|....*....|....*....|....*....|....*....|
gi 9948375  258 YESTNLAYLIYnQALLQFDVGMASAGGLIAVLIAnIAAIVLVRMIGKNLT 307
Cdd:COG0555 220 MKTEILPLLIY-LKLEEGDYAGATAIALVLLLIS-FLLLLLINLLQRRSR 267
ModB COG4149
ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and ...
 89-229 6.60e-09

ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, permease component ModB is part of the Pathway/BioSystem: Molybdopterin biosynthesis


Pssm-ID: 443320 [Multi-domain]  Cd Length: 223  Bit Score: 55.05  E-value: 6.60e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9948375   89 TLLLVGSVLAISVAFGVLIAALLEAGEFFGRGAVRVLLISPFFIMPTVS--ALLwknLIFHPVSGILAAVWRLFGAEPV- 165
Cdd:COG4149  12 SLKVALIATLLLLLLGIPLAWWLARTRFRGKGLLEALVTLPLVLPPTVLgfYLL---LLFGRNGPLGQLLEELFGISLVf 88

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 9948375  166 DWLAhypllsIIL---IVSwqwLPFAILILMTAMQSLDQEQKEAARLDGAGPLAIFWHLTLPhLARP 229
Cdd:COG4149  89 TWTG------AVLasvVVS---LPLMVQPLRAAFEAVDPRLEEAARTLGASPWRVFFRVTLP-LAKP 145
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 169-304 5.52e-08

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 51.92  E-value: 5.52e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9948375    169 AHYPLLSIILIVSWQWLPFAILILMTAMQSLDQEQKEAARLDGAGPLAIFWHLTLPHLARPIAVVLMIETIFLLSVFAEI 248
Cdd:pfam00528  48 LGHGILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLL 127

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 9948375    249 FTTTSGGPGYESTNLAYLIYNQALLQFdvgmASAGGLIAVLIANIAAIVLVRMIGK 304
Cdd:pfam00528 128 EFLGSWPGLGLLLIEAILGYDYPEIQG----PVLAAALILLLLNLLVDILQRLLDP 179
MalG COG3833
ABC-type maltose transport system, permease component MalG [Carbohydrate transport and ...
 36-236 3.96e-07

ABC-type maltose transport system, permease component MalG [Carbohydrate transport and metabolism];


Pssm-ID: 443045 [Multi-domain]  Cd Length: 282  Bit Score: 50.53  E-value: 3.96e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9948375   36 ALLLLWMIVPLGMTLYFSLIRYNLLYPGENAF--VGLENFTFFVTDAGFLPGALNTLLLVGSVLAISVAFGVLIAALLEA 113
Cdd:COG3833  23 IILAIIALFPILWVVSASFNPGGSLYSSSLIPenFTLENYKKLFTETPFLRWFLNSLIVAVVTAIISVFLAALAAYAFSR 102

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9948375  114 GEFFGR-GAVRVLLISPFFimPTVSALLwknlifhPVSGILAAVwRLFGAepvdwlahypLLSIILIVSWQWLPFAILIL 192
Cdd:COG3833 103 FRFKGRkAGLLALLLLQMF--PAFLALV-------ALYLLLSAL-GLLNT----------LLGLILVYLGGAIPFNTWLM 162

                       170       180       190       200
                ....*....|....*....|....*....|....*....|....
gi 9948375  193 MTAMQSLDQEQKEAARLDGAGPLAIFWHLTLPhLARPIAVVLMI 236
Cdd:COG3833 163 KGYFDTIPKELDEAAKIDGASHFQIFFRIILP-LAKPILAVVAL 205
modB_ABC TIGR02141
molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, ...
 89-304 5.43e-07

molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, of the molybdate ABC transporter. This system has been characterized in E. coli, Staphylococcus carnosus, Rhodobacter capsulatus and Azotobacter vinlandii. Molybdate is chemically similar to sulfate, thiosulfate, and selenate. These related substrates, and sometimes molybdate itself, can be transported by the homologous sulfate receptor. Some apparent molybdenum transport operons include a permease related to this ModB, although less similar than some sulfate permease proteins and not included in this model. [Transport and binding proteins, Anions]


Pssm-ID: 273993 [Multi-domain]  Cd Length: 208  Bit Score: 49.16  E-value: 5.43e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9948375     89 TLLLVGSVLAISVAFGVLIAALLEAGEFFGRGAVRVLLISPFFIMPTVSALLWknLIFHPVSGILAAVWRLFGAEPVDWL 168
Cdd:TIGR02141   3 SLKVAVIATLLLLPLGIPVAWLLARSRFRGKPLLEVLVTLPLVLPPTVLGFYL--LIAFGPNGPIGKLLELFGISLVFTF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9948375    169 AHYPLLSIIliVSwqwLPFAILILMTAMQSLDQEQKEAARLDGAGPLAIFWHLTLPHLARPIAVVLMIETIFLLSVFAEI 248
Cdd:TIGR02141  81 TGAVLASVI--VS---FPLMVQPIRAAFEAVDPDLEEAARTLGASESQTFLKVTLPLAFPGLLAGAVLSFARALGEFGAT 155

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 9948375    249 FTTTSGGPGYESTnLAYLIYNQalLQFDVGMASAGGLIAVLIAnIAAIVLVRMIGK 304
Cdd:TIGR02141 156 LMFAGNIPGETQT-IPLAIYDA--VESDYELAHQLSLVLLAIS-LIVLLLVELLNK 207
3a0106s02 TIGR00969
sulfate ABC transporter, permease protein; This model describes a subfamily of both CysT and ...
 41-299 6.41e-07

sulfate ABC transporter, permease protein; This model describes a subfamily of both CysT and CysW, paralogous and generally tandemly encoded permease proteins of the sulfate ABC transporter. [Transport and binding proteins, Anions]


Pssm-ID: 273370  Cd Length: 271  Bit Score: 49.66  E-value: 6.41e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9948375     41 WMIVPLGMTL-YFSLIrynLLYPGENAFV-----GLENFTFFVTDAGFLPGALNTLLLVGSVLAISVAFGVLIAALLEAG 114
Cdd:TIGR00969  14 WGKLSLGIALlYVFLI---LILPVAALFVqafskGLGQFWQNATDPIAVSAYNLTLLMALIAVPLNGVFGLLIAWVLTRY 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9948375    115 EFFGRGAVRVLLISPFFIMPTVSALLWknLIFHPVSGILAAVWRLFGAEPVdwlahYPLLSIILIVSWQWLPFAILILMT 194
Cdd:TIGR00969  91 QFPGRKLLDALIDLPFALSPVVAGLTL--ALLYGSNGWLGSWLASFGIQII-----FTWPGMALAMIFVSLPFVVREVQP 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9948375    195 AMQSLDQEQKEAARLDGAGPLAIFWHLTLPHLARPIAVVLMIETIFLLSVFAEIFTTTSGGPGYESTnLAYLIYnQALLQ 274
Cdd:TIGR00969 164 VLEELGTEAEEAAATLGASGWQTFWRVTLPSIRWALLYGVVLTFARALGEFGAVVVVSGNIPGKTLT-LPLLIE-ERLEQ 241

                         250       260
                  ....*....|....*....|....*
gi 9948375    275 FDVGMASAgglIAVLIANIAAIVLV 299
Cdd:TIGR00969 242 YDYPGAYV---IAAVLLLVSLVTLF 263
cysW PRK11602
sulfate/thiosulfate ABC transporter permease CysW;
41-226 1.25e-06

sulfate/thiosulfate ABC transporter permease CysW;


Pssm-ID: 183225  Cd Length: 283  Bit Score: 48.98  E-value: 1.25e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9948375    41 WMIVPLGMTLYFSLIRYNLLYPGENAFV-GLENFTFFVTDAGFLPGALNTLLLVGSVLAISVAFGVLIAALLEAGEFFGR 119
Cdd:PRK11602  20 WFLIGIGMLVSAFILVVPMIYIFVQAFSkGLMPVLQNLADPDMLHAIWLTVLIALIAVPVNLVFGILLAWLVTRFNFPGR 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9948375   120 GAVRVLLISPFFIMPTVSALLWknLIFHPVSGILAavwrlfgaepvDWLAHYpllSIILIVSWQWL---------PFAIL 190
Cdd:PRK11602 100 QLLLTLLDIPFAVSPVVAGLVY--LLFYGSNGPLG-----------GWLDEH---NLQLMFSWPGMvlvtifvtcPFVVR 163

                        170       180       190
                 ....*....|....*....|....*....|....*.
gi 9948375   191 ILMTAMQSLDQEQKEAARLDGAGPLAIFWHLTLPHL 226
Cdd:PRK11602 164 ELVPVMLSQGSQEDEAAILLGASGWQMFRRVTLPNI 199
PRK15050 PRK15050
2-aminoethylphosphonate transport system permease PhnU; Provisional
 26-310 5.17e-06

2-aminoethylphosphonate transport system permease PhnU; Provisional


Pssm-ID: 237888 [Multi-domain]  Cd Length: 296  Bit Score: 47.31  E-value: 5.17e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9948375    26 PGWLLVSPSVALLLLWMIVPLGMTLYFSLirynllypGENAFVGLENFTFFVTDAGFLPGALNTLLLVGSVLAISVAFGV 105
Cdd:PRK15050  23 RPLLWLLLPLLVLAPLVVYPLVRVVLQSL--------TGEHGLGLATYRAVLGSPDFRGALLTTLQIAFASTAGCLVLGV 94

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9948375   106 LIAALLEAGEFFGRGAVrVLLISPFFIMPTVSALLWKNLIFHPVSGILAAVWRLFGAE--PVDWLahYPLLSIILIVSWQ 183
Cdd:PRK15050  95 LLALVLAFVPFPGASLV-GRFIDTFVAFPSFLITLAFTFLYGSAGSVNIALQRLFGLEapPLDFL--YSPGGVILAEITF 171

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9948375   184 WLPFAILILMTAMQSLDQEQKEAARLDGAGPLAIFWHLTLPhLARPiAVVLMIETIFLLSV--FAEIFTTTSGGpgyeST 261
Cdd:PRK15050 172 YTPFVVRPLLAAFAQLDARQLEAAASLGASPWRVARRVILP-EAWP-ALAAGGSLCLLLTLneFGIVLFTGAKD----VV 245

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*....
gi 9948375   262 NLAYLIYNQALLQFDVGMASAGGLIAVLIAnIAAIVLVRMIGKNLTERS 310
Cdd:PRK15050 246 TLPVLIYSKAIVDFDYPTACAIAVVNLALS-LGLYALYRRVNRRAGGGS 293
cysT CHL00187
sulfate transport protein; Provisional
 103-226 4.91e-03

sulfate transport protein; Provisional


Pssm-ID: 214388 [Multi-domain]  Cd Length: 237  Bit Score: 37.69  E-value: 4.91e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9948375   103 FGVLIAALLEAGEFFGRGAVRVLLISPFFIMPTVSALLWKNLifHPVSGILAAVWRLFGAEPVdwlahYPLLSIILIVSW 182
Cdd:CHL00187  74 FGLLIAWVLVRYNFPGKRLLDAAVDLPFALPTSVAGLTLATV--YGDNGWIGHLLSHLGIQIV-----FTKLGVLLAMIF 146

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 9948375   183 QWLPFAILILMTAMQSLDQEQKEAARLDGAGPLAIFWHLTLPHL 226
Cdd:CHL00187 147 VSFPFVVRTIQPVLQEIEKELEEAAWSLGASPWQTFWKVIFPPL 190
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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