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Conserved domains on  [gi|12654081|gb|AAH00850|]
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FBXW5 protein [Homo sapiens]

Protein Classification

WD40 repeat domain-containing protein( domain architecture ID 1000017)

WD40 repeat domain-containing protein folds into a beta-propeller structure and functions as a scaffold, providing a platform for the interaction and assembly of several proteins into a signalosome; similar to a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly

CATH:  2.130.10.10
Gene Ontology:  GO:0005515
PubMed:  10322433|8090199|30069656|29026209
SCOP:  4002744

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
WD40 super family cl29593
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ...
 40-131 2.01e-11

WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.


The actual alignment was detected with superfamily member cd00200:

Pssm-ID: 475233 [Multi-domain]  Cd Length: 289  Bit Score: 60.43  E-value: 2.01e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12654081  40 VFDLKTmREVRRALRAHRAYtpndeCFFIFLDVSRDFVASGAEDRHGYIWDRHYNICLARLR-HEDVVNSVVFSPQEQEl 118
Cdd:cd00200 119 VWDVET-GKCLTTLRGHTDW-----VNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTgHTGEVNSVAFSPDGEK- 191

                        90
                ....*....|...
gi 12654081 119 LLTASDDATIKAW 131
Cdd:cd00200 192 LLSSSSDGTIKLW 204
 
Name Accession Description Interval E-value
WD40 cd00200
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ...
 40-131 2.01e-11

WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.


Pssm-ID: 238121 [Multi-domain]  Cd Length: 289  Bit Score: 60.43  E-value: 2.01e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12654081  40 VFDLKTmREVRRALRAHRAYtpndeCFFIFLDVSRDFVASGAEDRHGYIWDRHYNICLARLR-HEDVVNSVVFSPQEQEl 118
Cdd:cd00200 119 VWDVET-GKCLTTLRGHTDW-----VNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTgHTGEVNSVAFSPDGEK- 191

                        90
                ....*....|...
gi 12654081 119 LLTASDDATIKAW 131
Cdd:cd00200 192 LLSSSSDGTIKLW 204
WD40 COG2319
WD40 repeat [General function prediction only];
40-132 4.10e-11

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 59.92  E-value: 4.10e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12654081  40 VFDLKTmREVRRALRAHR------AYTPNDEcffifldvsrdFVASGAEDRHGYIWDRHYNICLARLR-HEDVVNSVVFS 112
Cdd:COG2319 314 LWDLAT-GKLLRTLTGHTgavrsvAFSPDGK-----------TLASGSDDGTVRLWDLATGELLRTLTgHTGAVTSVAFS 381

                        90       100
                ....*....|....*....|
gi 12654081 113 PQEQeLLLTASDDATIKAWR 132
Cdd:COG2319 382 PDGR-TLASGSADGTVRLWD 400
WD40 smart00320
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ...
 96-131 4.95e-05

WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.


Pssm-ID: 197651 [Multi-domain]  Cd Length: 40  Bit Score: 38.83  E-value: 4.95e-05
                           10        20        30
                   ....*....|....*....|....*....|....*..
gi 12654081     96 CLARLR-HEDVVNSVVFSPQEQeLLLTASDDATIKAW 131
Cdd:smart00320   4 LLKTLKgHTGPVTSVAFSPDGK-YLASGSDDGTIKLW 39
WD40 pfam00400
WD domain, G-beta repeat;
96-131 1.51e-04

WD domain, G-beta repeat;


Pssm-ID: 459801 [Multi-domain]  Cd Length: 39  Bit Score: 37.32  E-value: 1.51e-04
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 12654081    96 CLARLR-HEDVVNSVVFSPQEQeLLLTASDDATIKAW 131
Cdd:pfam00400   3 LLKTLEgHTGSVTSLAFSPDGK-LLASGSDDGTVKVW 38
 
Name Accession Description Interval E-value
WD40 cd00200
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ...
 40-131 2.01e-11

WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.


Pssm-ID: 238121 [Multi-domain]  Cd Length: 289  Bit Score: 60.43  E-value: 2.01e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12654081  40 VFDLKTmREVRRALRAHRAYtpndeCFFIFLDVSRDFVASGAEDRHGYIWDRHYNICLARLR-HEDVVNSVVFSPQEQEl 118
Cdd:cd00200 119 VWDVET-GKCLTTLRGHTDW-----VNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTgHTGEVNSVAFSPDGEK- 191

                        90
                ....*....|...
gi 12654081 119 LLTASDDATIKAW 131
Cdd:cd00200 192 LLSSSSDGTIKLW 204
WD40 COG2319
WD40 repeat [General function prediction only];
40-132 4.10e-11

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 59.92  E-value: 4.10e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12654081  40 VFDLKTmREVRRALRAHR------AYTPNDEcffifldvsrdFVASGAEDRHGYIWDRHYNICLARLR-HEDVVNSVVFS 112
Cdd:COG2319 314 LWDLAT-GKLLRTLTGHTgavrsvAFSPDGK-----------TLASGSDDGTVRLWDLATGELLRTLTgHTGAVTSVAFS 381

                        90       100
                ....*....|....*....|
gi 12654081 113 PQEQeLLLTASDDATIKAWR 132
Cdd:COG2319 382 PDGR-TLASGSADGTVRLWD 400
WD40 COG2319
WD40 repeat [General function prediction only];
40-156 9.94e-11

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 58.77  E-value: 9.94e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12654081  40 VFDLKTMREVRRaLRAHRAYtpndecfFIFLDVSRD--FVASGAEDRHGYIWDRHYNICLARLR-HEDVVNSVVFSPQEQ 116
Cdd:COG2319 230 LWDLATGKLLRT-LTGHSGS-------VRSVAFSPDgrLLASGSADGTVRLWDLATGELLRTLTgHSGGVNSVAFSPDGK 301

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*..
gi 12654081 117 eLLLTASDDATIKAW--RSPRTMRVLQAPRPRPRTF-FS----WLAS 156
Cdd:COG2319 302 -LLASGSDDGTVRLWdlATGKLLRTLTGHTGAVRSVaFSpdgkTLAS 347
WD40 COG2319
WD40 repeat [General function prediction only];
4-156 1.72e-09

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 55.30  E-value: 1.72e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12654081   4 SPDNRYLYVNSRawpNGAVvadpmqpppiaeeidlLVFDLKTMREVRRaLRAHR------AYTPNDEcffifldvsrdFV 77
Cdd:COG2319 171 SPDGKLLASGSD---DGTV----------------RLWDLATGKLLRT-LTGHTgavrsvAFSPDGK-----------LL 219

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12654081  78 ASGAEDRHGYIWDRHYNICLARLR-HEDVVNSVVFSPQEQeLLLTASDDATIKAWR--SPRTMRVLQAPRPRPRTF-FS- 152
Cdd:COG2319 220 ASGSADGTVRLWDLATGKLLRTLTgHSGSVRSVAFSPDGR-LLASGSADGTVRLWDlaTGELLRTLTGHSGGVNSVaFSp 298


                ....*..
gi 12654081 153 ---WLAS 156
Cdd:COG2319 299 dgkLLAS 305
WD40 COG2319
WD40 repeat [General function prediction only];
21-156 5.39e-09

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 53.76  E-value: 5.39e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12654081  21 AVVADPMQPPPIAEEIDLLVFDLKTmREVRRALRAHRAYTPNdecffifLDVSRD--FVASGAEDRHGYIWDRHYNICLA 98
Cdd:COG2319  85 AFSPDGRLLASASADGTVRLWDLAT-GLLLRTLTGHTGAVRS-------VAFSPDgkTLASGSADGTVRLWDLATGKLLR 156

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 12654081  99 RLR-HEDVVNSVVFSPQEQeLLLTASDDATIKAW--RSPRTMRVLQAPRPRPRTF-FS----WLAS 156
Cdd:COG2319 157 TLTgHSGAVTSVAFSPDGK-LLASGSDDGTVRLWdlATGKLLRTLTGHTGAVRSVaFSpdgkLLAS 221
WD40 cd00200
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ...
 40-132 7.01e-09

WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.


Pssm-ID: 238121 [Multi-domain]  Cd Length: 289  Bit Score: 53.11  E-value: 7.01e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12654081  40 VFDLKTMREVRRaLRAHraytpNDECFFIFLDVSRDFVASGAEDRHGYIWDRHYNICLARLR-HEDVVNSVVFSPQEQeL 118
Cdd:cd00200 203 LWDLSTGKCLGT-LRGH-----ENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSgHTNSVTSLAWSPDGK-R 275

                        90
                ....*....|....
gi 12654081 119 LLTASDDATIKAWR 132
Cdd:cd00200 276 LASGSADGTIRIWD 289
WD40 cd00200
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ...
 40-146 1.08e-08

WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.


Pssm-ID: 238121 [Multi-domain]  Cd Length: 289  Bit Score: 52.72  E-value: 1.08e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12654081  40 VFDLKTMREVRRaLRAHraytpNDECFFI-FLDVSRDFVASGAeDRHGYIWDRHYNICLARLR-HEDVVNSVVFSPQeQE 117
Cdd:cd00200 161 LWDLRTGKCVAT-LTGH-----TGEVNSVaFSPDGEKLLSSSS-DGTIKLWDLSTGKCLGTLRgHENGVNSVAFSPD-GY 232

                        90       100       110
                ....*....|....*....|....*....|.
gi 12654081 118 LLLTASDDATIKAW--RSPRTMRVLQAPRPR 146
Cdd:cd00200 233 LLASGSEDGTIRVWdlRTGECVQTLSGHTNS 263
WD40 cd00200
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ...
 50-131 1.14e-08

WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.


Pssm-ID: 238121 [Multi-domain]  Cd Length: 289  Bit Score: 52.34  E-value: 1.14e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12654081  50 RRALRAHRaytpnDECFFIFLDVSRDFVASGAEDRHGYIWDRHYNICLARLR-HEDVVNSVVFSPQeQELLLTASDDATI 128
Cdd:cd00200   2 RRTLKGHT-----GGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKgHTGPVRDVAASAD-GTYLASGSSDKTI 75


                ...
gi 12654081 129 KAW 131
Cdd:cd00200  76 RLW 78
WD40 cd00200
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ...
 38-131 6.27e-07

WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.


Pssm-ID: 238121 [Multi-domain]  Cd Length: 289  Bit Score: 47.33  E-value: 6.27e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12654081  38 LLVFDLKTMREVRRaLRAHraytpNDECFFIFLDVSRDFVASGAEDRHGYIWDRHYNICLARLR-HEDVVNSVVFSPQEQ 116
Cdd:cd00200  33 IKVWDLETGELLRT-LKGH-----TGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTgHTSYVSSVAFSPDGR 106

                        90
                ....*....|....*
gi 12654081 117 eLLLTASDDATIKAW 131
Cdd:cd00200 107 -ILSSSSRDKTIKVW 120
WD40 smart00320
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ...
 96-131 4.95e-05

WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.


Pssm-ID: 197651 [Multi-domain]  Cd Length: 40  Bit Score: 38.83  E-value: 4.95e-05
                           10        20        30
                   ....*....|....*....|....*....|....*..
gi 12654081     96 CLARLR-HEDVVNSVVFSPQEQeLLLTASDDATIKAW 131
Cdd:smart00320   4 LLKTLKgHTGPVTSVAFSPDGK-YLASGSDDGTIKLW 39
WD40 pfam00400
WD domain, G-beta repeat;
96-131 1.51e-04

WD domain, G-beta repeat;


Pssm-ID: 459801 [Multi-domain]  Cd Length: 39  Bit Score: 37.32  E-value: 1.51e-04
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 12654081    96 CLARLR-HEDVVNSVVFSPQEQeLLLTASDDATIKAW 131
Cdd:pfam00400   3 LLKTLEgHTGSVTSLAFSPDGK-LLASGSDDGTVKVW 38
WD40 cd00200
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ...
 102-132 9.45e-04

WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.


Pssm-ID: 238121 [Multi-domain]  Cd Length: 289  Bit Score: 38.08  E-value: 9.45e-04
                        10        20        30
                ....*....|....*....|....*....|.
gi 12654081 102 HEDVVNSVVFSPQeQELLLTASDDATIKAWR 132
Cdd:cd00200   8 HTGGVTCVAFSPD-GKLLATGSGDGTIKVWD 37
WD40 COG2319
WD40 repeat [General function prediction only];
47-156 7.76e-03

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 35.66  E-value: 7.76e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12654081  47 REVRRALRAHRAYTPNDECFFIFLDVSRDFVASGAEDRHGYIWDRHYNICLARLR-HEDVVNSVVFSPQEQeLLLTASDD 125
Cdd:COG2319  21 LAAALGALLLLLLGLAAAVASLAASPDGARLAAGAGDLTLLLLDAAAGALLATLLgHTAAVLSVAFSPDGR-LLASASAD 99

                        90       100       110
                ....*....|....*....|....*....|....*...
gi 12654081 126 ATIKAWR--SPRTMRVLQAPRPRPRTF-FS----WLAS 156
Cdd:COG2319 100 GTVRLWDlaTGLLLRTLTGHTGAVRSVaFSpdgkTLAS 137
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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