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Conserved domains on  [gi|13542859|gb|AAH05626|]
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Prdx3 protein [Mus musculus]

Protein Classification

peroxiredoxin( domain architecture ID 10122432)

peroxiredoxin, also called thioredoxin peroxidase or alkyl hydroperoxide reductase, is a thiol-specific antioxidant protein that protects cells against reactive oxygen species

CATH:  3.40.30.10
EC:  1.11.1.-
Gene Ontology:  GO:0008379
SCOP:  4000042

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PRX_Typ2cys cd03015
Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant ...
66-236 7.94e-117

Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric interface in atypical 2-cys PRX and PRX5) at the opposite end of the monomer to form the stable decameric (pentamer of dimers) structure.


:

Pssm-ID: 239313  Cd Length: 173  Bit Score: 331.39  E-value: 7.94e-117
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13542859  66 VTQHAPYFKGTAVVN-GEFKELSLDDFKGKYLVLFFYPLDFTFVCPTEIVAFSDKANEFHDVNCEVVAVSVDSHFSHLAW 144
Cdd:cd03015   1 VGKKAPDFKATAVVPnGEFKEISLSDYKGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLAW 80
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13542859 145 INTPRKNGGLGHMNITLLSDITKQISRDYGVLLESAGIALRGLFIIDPNGVVKHLSVNDLPVGRSVEETLRLVKAFQFVE 224
Cdd:cd03015  81 RNTPRKEGGLGKINFPLLADPKKKISRDYGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDALQFVE 160
                       170
                ....*....|..
gi 13542859 225 THGEVCPANWTP 236
Cdd:cd03015 161 EHGEVCPANWKP 172
 
Name Accession Description Interval E-value
PRX_Typ2cys cd03015
Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant ...
66-236 7.94e-117

Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric interface in atypical 2-cys PRX and PRX5) at the opposite end of the monomer to form the stable decameric (pentamer of dimers) structure.


Pssm-ID: 239313  Cd Length: 173  Bit Score: 331.39  E-value: 7.94e-117
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13542859  66 VTQHAPYFKGTAVVN-GEFKELSLDDFKGKYLVLFFYPLDFTFVCPTEIVAFSDKANEFHDVNCEVVAVSVDSHFSHLAW 144
Cdd:cd03015   1 VGKKAPDFKATAVVPnGEFKEISLSDYKGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLAW 80
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13542859 145 INTPRKNGGLGHMNITLLSDITKQISRDYGVLLESAGIALRGLFIIDPNGVVKHLSVNDLPVGRSVEETLRLVKAFQFVE 224
Cdd:cd03015  81 RNTPRKEGGLGKINFPLLADPKKKISRDYGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDALQFVE 160
                       170
                ....*....|..
gi 13542859 225 THGEVCPANWTP 236
Cdd:cd03015 161 EHGEVCPANWKP 172
AhpC COG0450
Alkyl hydroperoxide reductase subunit AhpC (peroxiredoxin) [Defense mechanisms];
63-254 4.09e-107

Alkyl hydroperoxide reductase subunit AhpC (peroxiredoxin) [Defense mechanisms];


Pssm-ID: 440219  Cd Length: 196  Bit Score: 307.77  E-value: 4.09e-107
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13542859  63 TPAVTQHAPYFKGTAVVNGEFKELSLDDFKGKYLVLFFYPLDFTFVCPTEIVAFSDKANEFHDVNCEVVAVSVDSHFSHL 142
Cdd:COG0450   2 MPLIGDKAPDFTAEATHGGEFKKISLSDYKGKWVVLFFHPADFTFVCPTELGAFAKRYEEFKKLGVEVIGLSVDSVFSHK 81
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13542859 143 AWINTPRKNGGLGHMNITLLSDITKQISRDYGVLLESAGIALRGLFIIDPNGVVKHLSVNDLPVGRSVEETLRLVKAFQF 222
Cdd:COG0450  82 AWHETIKEKGGIVKIKFPIIADPTGKIARAYGMLHPEDGVAVRGVFIIDPDGKIRAIEVYPLSVGRNVDEILRVVDALQF 161
                       170       180       190
                ....*....|....*....|....*....|..
gi 13542859 223 VETHGEVCPANWTPESPTIKPSPTASKEYFEK 254
Cdd:COG0450 162 VDKHGEVCPANWKPGDKVIIPPPDLVGKALER 193
PTZ00253 PTZ00253
tryparedoxin peroxidase; Provisional
70-252 1.06e-98

tryparedoxin peroxidase; Provisional


Pssm-ID: 140280  Cd Length: 199  Bit Score: 286.80  E-value: 1.06e-98
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13542859   70 APYFKGTAVV-NGEFKELSLDDFKGKYLVLFFYPLDFTFVCPTEIVAFSDKANEFHDVNCEVVAVSVDSHFSHLAWINTP 148
Cdd:PTZ00253  12 APSFEEVALMpNGSFKKISLSSYKGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAHLQWTLQE 91
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13542859  149 RKNGGLGHMNITLLSDITKQISRDYGVLLESAGIALRGLFIIDPNGVVKHLSVNDLPVGRSVEETLRLVKAFQFVETHGE 228
Cdd:PTZ00253  92 RKKGGLGTMAIPMLADKTKSIARSYGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLLEAFQFVEKHGE 171
                        170       180
                 ....*....|....*....|....
gi 13542859  229 VCPANWTPESPTIKPSPTASKEYF 252
Cdd:PTZ00253 172 VCPANWKKGDPTMKPDPNKSKEGF 195
AhpC TIGR03137
peroxiredoxin; This peroxiredoxin (AhpC, alkylhydroperoxide reductase subunit C) is one ...
63-244 5.27e-68

peroxiredoxin; This peroxiredoxin (AhpC, alkylhydroperoxide reductase subunit C) is one subunit of a two-subunit complex with subunit F(TIGR03140). Usually these are found as an apparent operon. The gene has been characterized in Bacteroides fragilis, where it is important in oxidative stress defense. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue. [Cellular processes, Detoxification, Cellular processes, Adaptations to atypical conditions]


Pssm-ID: 211789  Cd Length: 187  Bit Score: 208.41  E-value: 5.27e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13542859    63 TPAVTQHAPYFKGTAVVNGEFKELSLDDFKGKYLVLFFYPLDFTFVCPTEIVAFSDKANEFHDVNCEVVAVSVDSHFSHL 142
Cdd:TIGR03137   1 MSLINTEIKPFKATAYHNGEFVEVTDEDVKGKWSVFFFYPADFTFVCPTELEDLADNYAELKKLGVEVYSVSTDTHFVHK 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13542859   143 AWINTprkNGGLGHMNITLLSDITKQISRDYGVLLESAGIALRGLFIIDPNGVVKHLSVNDLPVGRSVEETLRLVKAFQF 222
Cdd:TIGR03137  81 AWHDT---SEAIGKITYPMLGDPTGVLTRNFGVLIEEAGLADRGTFVIDPEGVIQAVEIHDNGIGRDASELLRKIKAAQY 157
                         170       180
                  ....*....|....*....|...
gi 13542859   223 VETH-GEVCPANWTPESPTIKPS 244
Cdd:TIGR03137 158 VAAHpGEVCPAKWKEGAETLKPS 180
peroxi_PrxU NF040737
thioredoxin-dependent peroxiredoxin;
66-245 2.41e-57

thioredoxin-dependent peroxiredoxin;


Pssm-ID: 468701  Cd Length: 233  Bit Score: 182.55  E-value: 2.41e-57
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13542859   66 VTQHAPYFKGTAVVNGEFKELSLDDFKGKYLVLFFYPLDFTFVCPTEIVAFSDKANEFHDVNCEVVAVSVDSHFSHLAWI 145
Cdd:NF040737  38 VGKKAPDFTAPAYYKGGFTNVKLSDYLGKWVVLCFYPGDFTFVUATEISAVAEKHDEFQKLGVEVLSMSTDSVFVHKMWN 117
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13542859  146 NTPRKNGGLGHMNITLLSDITKQISRDYGVLLESAGIALRGLFIIDPNGVVKHLSVNDLPVGRSVEETLRLVKAFQFV-E 224
Cdd:NF040737 118 DEELSKMVTGGVPFPMLSDGGGKIGKAYGVYDEAAGVDIRGRFIIDPDGVIQAMEVLTPPVGRNVSETIRQIQAFQHVrE 197
                        170       180
                 ....*....|....*....|..
gi 13542859  225 THG-EVCPANWTPESPTIKPSP 245
Cdd:NF040737 198 TKGtEATPSGWQPGKPTLKPGP 219
AhpC-TSA pfam00578
AhpC/TSA family; This family contains proteins related to alkyl hydroperoxide reductase (AhpC) ...
66-198 3.09e-48

AhpC/TSA family; This family contains proteins related to alkyl hydroperoxide reductase (AhpC) and thiol specific antioxidant (TSA).


Pssm-ID: 425763 [Multi-domain]  Cd Length: 124  Bit Score: 155.46  E-value: 3.09e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13542859    66 VTQHAPYFKGTavvNGEFKELSLDDFKGKYLVLFFYPLDFTFVCPTEIVAFSDKANEFHDVNCEVVAVSVDSHFSHLAWI 145
Cdd:pfam00578   1 VGDKAPDFELP---DGDGGTVSLSDYRGKWVVLFFYPADWTPVCTTELPALADLYEEFKKLGVEVLGVSVDSPESHKAFA 77
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 13542859   146 NTPRkngglghMNITLLSDITKQISRDYGVLLESAGIALRGLFIIDPNGVVKH 198
Cdd:pfam00578  78 EKYG-------LPFPLLSDPDGEVARAYGVLNEEEGGALRATFVIDPDGKVRY 123
 
Name Accession Description Interval E-value
PRX_Typ2cys cd03015
Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant ...
66-236 7.94e-117

Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric interface in atypical 2-cys PRX and PRX5) at the opposite end of the monomer to form the stable decameric (pentamer of dimers) structure.


Pssm-ID: 239313  Cd Length: 173  Bit Score: 331.39  E-value: 7.94e-117
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13542859  66 VTQHAPYFKGTAVVN-GEFKELSLDDFKGKYLVLFFYPLDFTFVCPTEIVAFSDKANEFHDVNCEVVAVSVDSHFSHLAW 144
Cdd:cd03015   1 VGKKAPDFKATAVVPnGEFKEISLSDYKGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLAW 80
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13542859 145 INTPRKNGGLGHMNITLLSDITKQISRDYGVLLESAGIALRGLFIIDPNGVVKHLSVNDLPVGRSVEETLRLVKAFQFVE 224
Cdd:cd03015  81 RNTPRKEGGLGKINFPLLADPKKKISRDYGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDALQFVE 160
                       170
                ....*....|..
gi 13542859 225 THGEVCPANWTP 236
Cdd:cd03015 161 EHGEVCPANWKP 172
AhpC COG0450
Alkyl hydroperoxide reductase subunit AhpC (peroxiredoxin) [Defense mechanisms];
63-254 4.09e-107

Alkyl hydroperoxide reductase subunit AhpC (peroxiredoxin) [Defense mechanisms];


Pssm-ID: 440219  Cd Length: 196  Bit Score: 307.77  E-value: 4.09e-107
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13542859  63 TPAVTQHAPYFKGTAVVNGEFKELSLDDFKGKYLVLFFYPLDFTFVCPTEIVAFSDKANEFHDVNCEVVAVSVDSHFSHL 142
Cdd:COG0450   2 MPLIGDKAPDFTAEATHGGEFKKISLSDYKGKWVVLFFHPADFTFVCPTELGAFAKRYEEFKKLGVEVIGLSVDSVFSHK 81
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13542859 143 AWINTPRKNGGLGHMNITLLSDITKQISRDYGVLLESAGIALRGLFIIDPNGVVKHLSVNDLPVGRSVEETLRLVKAFQF 222
Cdd:COG0450  82 AWHETIKEKGGIVKIKFPIIADPTGKIARAYGMLHPEDGVAVRGVFIIDPDGKIRAIEVYPLSVGRNVDEILRVVDALQF 161
                       170       180       190
                ....*....|....*....|....*....|..
gi 13542859 223 VETHGEVCPANWTPESPTIKPSPTASKEYFEK 254
Cdd:COG0450 162 VDKHGEVCPANWKPGDKVIIPPPDLVGKALER 193
PTZ00253 PTZ00253
tryparedoxin peroxidase; Provisional
70-252 1.06e-98

tryparedoxin peroxidase; Provisional


Pssm-ID: 140280  Cd Length: 199  Bit Score: 286.80  E-value: 1.06e-98
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13542859   70 APYFKGTAVV-NGEFKELSLDDFKGKYLVLFFYPLDFTFVCPTEIVAFSDKANEFHDVNCEVVAVSVDSHFSHLAWINTP 148
Cdd:PTZ00253  12 APSFEEVALMpNGSFKKISLSSYKGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAHLQWTLQE 91
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13542859  149 RKNGGLGHMNITLLSDITKQISRDYGVLLESAGIALRGLFIIDPNGVVKHLSVNDLPVGRSVEETLRLVKAFQFVETHGE 228
Cdd:PTZ00253  92 RKKGGLGTMAIPMLADKTKSIARSYGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLLEAFQFVEKHGE 171
                        170       180
                 ....*....|....*....|....
gi 13542859  229 VCPANWTPESPTIKPSPTASKEYF 252
Cdd:PTZ00253 172 VCPANWKKGDPTMKPDPNKSKEGF 195
AhpC TIGR03137
peroxiredoxin; This peroxiredoxin (AhpC, alkylhydroperoxide reductase subunit C) is one ...
63-244 5.27e-68

peroxiredoxin; This peroxiredoxin (AhpC, alkylhydroperoxide reductase subunit C) is one subunit of a two-subunit complex with subunit F(TIGR03140). Usually these are found as an apparent operon. The gene has been characterized in Bacteroides fragilis, where it is important in oxidative stress defense. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue. [Cellular processes, Detoxification, Cellular processes, Adaptations to atypical conditions]


Pssm-ID: 211789  Cd Length: 187  Bit Score: 208.41  E-value: 5.27e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13542859    63 TPAVTQHAPYFKGTAVVNGEFKELSLDDFKGKYLVLFFYPLDFTFVCPTEIVAFSDKANEFHDVNCEVVAVSVDSHFSHL 142
Cdd:TIGR03137   1 MSLINTEIKPFKATAYHNGEFVEVTDEDVKGKWSVFFFYPADFTFVCPTELEDLADNYAELKKLGVEVYSVSTDTHFVHK 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13542859   143 AWINTprkNGGLGHMNITLLSDITKQISRDYGVLLESAGIALRGLFIIDPNGVVKHLSVNDLPVGRSVEETLRLVKAFQF 222
Cdd:TIGR03137  81 AWHDT---SEAIGKITYPMLGDPTGVLTRNFGVLIEEAGLADRGTFVIDPEGVIQAVEIHDNGIGRDASELLRKIKAAQY 157
                         170       180
                  ....*....|....*....|...
gi 13542859   223 VETH-GEVCPANWTPESPTIKPS 244
Cdd:TIGR03137 158 VAAHpGEVCPAKWKEGAETLKPS 180
PTZ00137 PTZ00137
2-Cys peroxiredoxin; Provisional
48-254 2.77e-60

2-Cys peroxiredoxin; Provisional


Pssm-ID: 173427  Cd Length: 261  Bit Score: 191.31  E-value: 2.77e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13542859   48 SAQGKSAFSTSS-SFHT---PAVTQHAPYFKGTAVVNGEFKEL-SLDDFKGKYLVLFFYPLDFTFVCPTEIVAFSDKANE 122
Cdd:PTZ00137  48 SVNGVRNYSTSEgLCNTvtsSLVGKLMPSFKGTALLNDDLVQFnSSDYFKDSYGLLVFYPLDFTFVCPSELLGFSERLKE 127
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13542859  123 FHDVNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNITLLSDITKQISRDYGvLLESAGIALRGLFIIDPNGVVKHLSVN 202
Cdd:PTZ00137 128 FEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVSKSFG-LLRDEGFSHRASVLVDKAGVVKHVAVY 206
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|..
gi 13542859  203 DLPVGRSVEETLRLVKAFQFVETHGEVCPANWTPESPTIKPSPTASKEYFEK 254
Cdd:PTZ00137 207 DLGLGRSVDETLRLFDAVQFAEKTGNVCPVNWKQGDQAMKPDSQSVKQYLSN 258
PRK15000 PRK15000
peroxiredoxin C;
66-252 9.59e-60

peroxiredoxin C;


Pssm-ID: 184962  Cd Length: 200  Bit Score: 187.96  E-value: 9.59e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13542859   66 VTQHAPYFKGTAVV-NGEFKELSldDFK----GKYLVLFFYPLDFTFVCPTEIVAFSDKANEFHDVNCEVVAVSVDSHFS 140
Cdd:PRK15000   4 VTRQAPDFTAAAVLgSGEIVDKF--NFKqhtnGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFV 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13542859  141 HLAWINTPRKNGGLGHMNITLLSDITKQISRDYGVLLESAGIALRGLFIIDPNGVVKHLSVNDLPVGRSVEETLRLVKAF 220
Cdd:PRK15000  82 HNAWRNTPVDKGGIGPVKYAMVADVKREIQKAYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDAL 161
                        170       180       190
                 ....*....|....*....|....*....|..
gi 13542859  221 QFVETHGEVCPANWTPESPTIKPSPTASKEYF 252
Cdd:PRK15000 162 QFHEEHGDVCPAQWEKGKEGMNASPDGVAKYL 193
peroxi_PrxU NF040737
thioredoxin-dependent peroxiredoxin;
66-245 2.41e-57

thioredoxin-dependent peroxiredoxin;


Pssm-ID: 468701  Cd Length: 233  Bit Score: 182.55  E-value: 2.41e-57
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13542859   66 VTQHAPYFKGTAVVNGEFKELSLDDFKGKYLVLFFYPLDFTFVCPTEIVAFSDKANEFHDVNCEVVAVSVDSHFSHLAWI 145
Cdd:NF040737  38 VGKKAPDFTAPAYYKGGFTNVKLSDYLGKWVVLCFYPGDFTFVUATEISAVAEKHDEFQKLGVEVLSMSTDSVFVHKMWN 117
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13542859  146 NTPRKNGGLGHMNITLLSDITKQISRDYGVLLESAGIALRGLFIIDPNGVVKHLSVNDLPVGRSVEETLRLVKAFQFV-E 224
Cdd:NF040737 118 DEELSKMVTGGVPFPMLSDGGGKIGKAYGVYDEAAGVDIRGRFIIDPDGVIQAMEVLTPPVGRNVSETIRQIQAFQHVrE 197
                        170       180
                 ....*....|....*....|..
gi 13542859  225 THG-EVCPANWTPESPTIKPSP 245
Cdd:NF040737 198 TKGtEATPSGWQPGKPTLKPGP 219
PRX_family cd02971
Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins ...
70-214 6.55e-57

Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a cysteine sulfenic acid intermediate. The second step of the reaction, the resolution of the intermediate, distinguishes the different types of PRXs. The presence or absence of a second cysteine (the resolving cysteine) classifies PRXs as either belonging to the 2-cys or 1-cys type. The resolving cysteine of 2-cys PRXs is either on the same chain (atypical) or on the second chain (typical) of a functional homodimer. Structural and motif analysis of this growing family supports the need for a new classification system. The peroxidase activity of PRXs is regulated in vivo by irreversible cysteine over-oxidation into a sulfinic acid, phosphorylation and limited proteolysis.


Pssm-ID: 239269 [Multi-domain]  Cd Length: 140  Bit Score: 178.13  E-value: 6.55e-57
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13542859  70 APYFKGTAVVngeFKELSLDDFKGKYLVLFFYPLDFTFVCPTEIVAFSDKANEFHDVNCEVVAVSVDSHFSHLAWINTpr 149
Cdd:cd02971   2 APDFTLPATD---GGEVSLSDFKGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEK-- 76
                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 13542859 150 knggLGHMNITLLSDITKQISRDYGVLLE---SAGIALRGLFIIDPNGVVKHLSVNDLPVGRSVEETL 214
Cdd:cd02971  77 ----EGGLNFPLLSDPDGEFAKAYGVLIEksaGGGLAARATFIIDPDGKIRYVEVEPLPTGRNAEELL 140
PRK10382 PRK10382
alkyl hydroperoxide reductase subunit C; Provisional
67-244 6.24e-50

alkyl hydroperoxide reductase subunit C; Provisional


Pssm-ID: 182423  Cd Length: 187  Bit Score: 162.08  E-value: 6.24e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13542859   67 TQHAPyFKGTAVVNGEFKELSLDDFKGKYLVLFFYPLDFTFVCPTEIVAFSDKANEFHDVNCEVVAVSVDSHFSHLAWIN 146
Cdd:PRK10382   6 TKIKP-FKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHS 84
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13542859  147 TPRKnggLGHMNITLLSDITKQISRDYGVLLESAGIALRGLFIIDPNGVVKHLSVNDLPVGRSVEETLRLVKAFQFVETH 226
Cdd:PRK10382  85 SSET---IAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQYVASH 161
                        170
                 ....*....|....*....
gi 13542859  227 -GEVCPANWTPESPTIKPS 244
Cdd:PRK10382 162 pGEVCPAKWKEGEATLAPS 180
AhpC-TSA pfam00578
AhpC/TSA family; This family contains proteins related to alkyl hydroperoxide reductase (AhpC) ...
66-198 3.09e-48

AhpC/TSA family; This family contains proteins related to alkyl hydroperoxide reductase (AhpC) and thiol specific antioxidant (TSA).


Pssm-ID: 425763 [Multi-domain]  Cd Length: 124  Bit Score: 155.46  E-value: 3.09e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13542859    66 VTQHAPYFKGTavvNGEFKELSLDDFKGKYLVLFFYPLDFTFVCPTEIVAFSDKANEFHDVNCEVVAVSVDSHFSHLAWI 145
Cdd:pfam00578   1 VGDKAPDFELP---DGDGGTVSLSDYRGKWVVLFFYPADWTPVCTTELPALADLYEEFKKLGVEVLGVSVDSPESHKAFA 77
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 13542859   146 NTPRkngglghMNITLLSDITKQISRDYGVLLESAGIALRGLFIIDPNGVVKH 198
Cdd:pfam00578  78 EKYG-------LPFPLLSDPDGEVARAYGVLNEEEGGALRATFVIDPDGKVRY 123
PRK13190 PRK13190
putative peroxiredoxin; Provisional
68-255 1.21e-43

putative peroxiredoxin; Provisional


Pssm-ID: 106159  Cd Length: 202  Bit Score: 146.54  E-value: 1.21e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13542859   68 QHAPYFKgtavVNGEFKELSLDDFKGKYLVLFFYPLDFTFVCPTEIVAFSDKANEFHDVNCEVVAVSVDSHFSHLAWINT 147
Cdd:PRK13190   6 QKAPDFT----VNTTKGPIDLSKYKGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRD 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13542859  148 PRKNGGLgHMNITLLSDITKQISRDYGVLLESAGIALRGLFIIDPNGVVKHLSVNDLPVGRSVEETLRLVKAFQFVETHG 227
Cdd:PRK13190  82 IEERFGI-KIPFPVIADIDKELAREYNLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKALQVNWKRK 160
                        170       180
                 ....*....|....*....|....*...
gi 13542859  228 EVCPANWTPESPTIKPSPTASKEYFEKV 255
Cdd:PRK13190 161 VATPANWQPGQEGIVPAPSTLDEAEMRI 188
PRK13189 PRK13189
peroxiredoxin; Provisional
70-250 5.05e-42

peroxiredoxin; Provisional


Pssm-ID: 237297  Cd Length: 222  Bit Score: 142.81  E-value: 5.05e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13542859   70 APYFKgtavVNGEFKELSL-DDFKGKYLVLFFYPLDFTFVCPTEIVAFSDKANEFHDVNCEVVAVSVDSHFSHLAWINTP 148
Cdd:PRK13189  15 FPEFE----VKTTHGPIKLpDDYKGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWVEWI 90
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13542859  149 RKNGGLghmNIT--LLSDITKQISRDYGVLLESAG-IALRGLFIIDPNGVVKHLSVNDLPVGRSVEETLRLVKAFQFVET 225
Cdd:PRK13189  91 KEKLGV---EIEfpIIADDRGEIAKKLGMISPGKGtNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKALQTSDE 167
                        170       180
                 ....*....|....*....|....*....
gi 13542859  226 HGEVCPANWTP----ESPTIKPSPTASKE 250
Cdd:PRK13189 168 KGVATPANWPPndliKDKVIVPPASSVEE 196
PRX_1cys cd03016
Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one ...
87-250 1.43e-39

Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes and lung. The seed-specific plant 1-cys PRXs protect tissues from reactive oxygen species during desiccation and are also called rehydrins.


Pssm-ID: 239314  Cd Length: 203  Bit Score: 136.13  E-value: 1.43e-39
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13542859  87 SLDDFKG-KYLVLFFYPLDFTFVCPTEIVAFSDKANEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGlGHMNITLLSDI 165
Cdd:cd03016  18 KFHDYLGdSWGILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKWIEDIEEYTG-VEIPFPIIADP 96
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13542859 166 TKQISRDYGVLLESAGIAL--RGLFIIDPNGVVKhLSVNdLP--VGRSVEETLRLVKAFQFVETHGEVCPANWTPESPTI 241
Cdd:cd03016  97 DREVAKLLGMIDPDAGSTLtvRAVFIIDPDKKIR-LILY-YPatTGRNFDEILRVVDALQLTDKHKVATPANWKPGDDVI 174

                ....*....
gi 13542859 242 KPsPTASKE 250
Cdd:cd03016 175 VP-PSVSDE 182
PRK13191 PRK13191
putative peroxiredoxin; Provisional
89-257 9.09e-36

putative peroxiredoxin; Provisional


Pssm-ID: 183885  Cd Length: 215  Bit Score: 126.50  E-value: 9.09e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13542859   89 DDFKGKYLVLFFYPLDFTFVCPTEIVAFSDKANEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGLgHMNITLLSDITKQ 168
Cdd:PRK13191  29 DDYKGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWVMWIEKNLKV-EVPFPIIADPMGN 107
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13542859  169 ISRDYGVL-LESAGIALRGLFIIDPNGVVKHLSVNDLPVGRSVEETLRLVKAFQFVETHGEVCPANWtPESPTI-----K 242
Cdd:PRK13191 108 VAKRLGMIhAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRALQLVDKAGVVTPANW-PNNELIgdkviN 186
                        170
                 ....*....|....*
gi 13542859  243 PSPTASKEYFEKVHQ 257
Cdd:PRK13191 187 PAPRTIKDAKMRLGQ 201
PRX_AhpE_like cd03018
Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium ...
70-209 9.14e-33

Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.


Pssm-ID: 239316 [Multi-domain]  Cd Length: 149  Bit Score: 116.60  E-value: 9.14e-33
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13542859  70 APYFkgtAVVNGEFKELSLDDFKG-KYLVLFFYPLDFTFVCPTEIVAFSDKANEFHDVNCEVVAVSVDSHFSHLAWIntp 148
Cdd:cd03018   7 APDF---ELPDQNGQEVRLSEFRGrKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWA--- 80
                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 13542859 149 RKNGglghMNITLLSD--ITKQISRDYGVLLESAGIALRGLFIIDPNGVVKHLSVNDLPVGRS 209
Cdd:cd03018  81 EENG----LTFPLLSDfwPHGEVAKAYGVFDEDLGVAERAVFVIDRDGIIRYAWVSDDGEPRD 139
PRK13599 PRK13599
peroxiredoxin;
89-242 2.92e-29

peroxiredoxin;


Pssm-ID: 106544 [Multi-domain]  Cd Length: 215  Bit Score: 109.80  E-value: 2.92e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13542859   89 DDFKGKYLVLFFYPLDFTFVCPTEIVAFSDKANEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGLgHMNITLLSDITKQ 168
Cdd:PRK13599  24 EDYAGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDNTNI-AIPFPVIADDLGK 102
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 13542859  169 ISRDYGVLLESAGI-ALRGLFIIDPNGVVKHLSVNDLPVGRSVEETLRLVKAFQFVETHGEVCPANWtPESPTIK 242
Cdd:PRK13599 103 VSNQLGMIHPGKGTnTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKALQTADQYGVALPEKW-PNNYLIK 176
Bcp COG1225
Peroxiredoxin [Posttranslational modification, protein turnover, chaperones];
70-215 7.41e-29

Peroxiredoxin [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440838 [Multi-domain]  Cd Length: 136  Bit Score: 106.10  E-value: 7.41e-29
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13542859  70 APYFKGTAVvNGefKELSLDDFKGKYLVLFFYPlDFTFVCPTEIVAFSDKANEFHDVNCEVVAVSVDSHFSHLAWIntpR 149
Cdd:COG1225   1 APDFTLPDL-DG--KTVSLSDLRGKPVVLYFYA-TWCPGCTAELPELRDLYEEFKDKGVEVLGVSSDSDEAHKKFA---E 73
                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 13542859 150 KNGglghMNITLLSDITKQISRDYGVLlesagiALRGLFIIDPNGVVKHLSVNDLPVGRSVEETLR 215
Cdd:COG1225  74 KYG----LPFPLLSDPDGEVAKAYGVR------GTPTTFLIDPDGKIRYVWVGPVDPRPHLEEVLE 129
PRX_BCP cd03017
Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of ...
68-215 8.53e-29

Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), which functions as an alkyl-hydroperoxide reductase during post-diauxic growth.


Pssm-ID: 239315  Cd Length: 140  Bit Score: 106.09  E-value: 8.53e-29
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13542859  68 QHAPYFKGTavvNGEFKELSLDDFKGKYLVLFFYPLDFTFVCPTEIVAFSDKANEFHDVNCEVVAVSVDSHFSHLAWINt 147
Cdd:cd03017   1 DKAPDFTLP---DQDGETVSLSDLRGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAE- 76
                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 13542859 148 prKNGglghMNITLLSDITKQISRDYGVLLE---SAGIALRGLFIIDPNGVVKHLSVNDLPVGrSVEETLR 215
Cdd:cd03017  77 --KYG----LPFPLLSDPDGKLAKAYGVWGEkkkKYMGIERSTFLIDPDGKIVKVWRKVKPKG-HAEEVLE 140
PRX_Atyp2cys cd03014
Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing ...
65-198 1.01e-18

Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based interface (A-type for alternate), in contrast with the B-type interface of typical 2-cys and 1-cys PRXs.


Pssm-ID: 239312 [Multi-domain]  Cd Length: 143  Bit Score: 79.94  E-value: 1.01e-18
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13542859  65 AVTQHAPYFKgtaVVNGEFKELSLDDFKGKYLVLFFYP-LDfTFVCPTEIVAFSDKANEFHDVNceVVAVSVDSHFSHLA 143
Cdd:cd03014   1 KVGDKAPDFT---LVTSDLSEVSLADFAGKVKVISVFPsID-TPVCATQTKRFNKEAAKLDNTV--VLTISADLPFAQKR 74
                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*.
gi 13542859 144 WINTPrkngglGHMNITLLSD-ITKQISRDYGVLLESAGIALRGLFIIDPNGVVKH 198
Cdd:cd03014  75 WCGAE------GVDNVTTLSDfRDHSFGKAYGVLIKDLGLLARAVFVIDENGKVIY 124
Redoxin pfam08534
Redoxin; This family of redoxins includes peroxiredoxin, thioredoxin and glutaredoxin proteins.
65-205 1.64e-15

Redoxin; This family of redoxins includes peroxiredoxin, thioredoxin and glutaredoxin proteins.


Pssm-ID: 400717 [Multi-domain]  Cd Length: 148  Bit Score: 71.63  E-value: 1.64e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13542859    65 AVTQHAPYFKGTAVvNGEFKELSLDDFKGKYLVLFFYPLDFTFVCPTEIVAFSDKANEFHDVNCEVVAVSVDSH-FSHLA 143
Cdd:pfam08534   1 KAGDKAPDFTLPDA-ATDGNTVSLSDFKGKKVVLNFWPGAFCPTCSAEHPYLEKLNELYKEKGVDVVAVNSDNDaFFVKR 79
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 13542859   144 WINTPrkngglgHMNITLLSDITKQISRDYGVLLE---SAGIALRGLFIIDPNGVVKHLSVNDLP 205
Cdd:pfam08534  80 FWGKE-------GLPFPFLSDGNAAFTKALGLPIEedaSAGLRSPRYAVIDEDGKVVYLFVGPEP 137
tpx PRK00522
thiol peroxidase;
64-198 1.10e-13

thiol peroxidase;


Pssm-ID: 179055  Cd Length: 167  Bit Score: 66.85  E-value: 1.10e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13542859   64 PAVTQHAPYFKgtaVVNGEFKELSLDDFKGKYLVLFFYP-LDfTFVCPTEIVAFSDKANEFHDVNceVVAVSVDSHFSHL 142
Cdd:PRK00522  18 PQVGDKAPDFT---LVANDLSDVSLADFAGKRKVLNIFPsID-TGVCATSVRKFNQEAAELDNTV--VLCISADLPFAQK 91
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 13542859  143 AWIntprknGGLGHMNITLLSDI-TKQISRDYGVLLES---AGIALRGLFIIDPNGVVKH 198
Cdd:PRK00522  92 RFC------GAEGLENVITLSDFrDHSFGKAYGVAIAEgplKGLLARAVFVLDENNKVVY 145
1-cysPrx_C pfam10417
C-terminal domain of 1-Cys peroxiredoxin; This is the C-terminal domain of 1-Cys peroxiredoxin ...
219-254 2.23e-11

C-terminal domain of 1-Cys peroxiredoxin; This is the C-terminal domain of 1-Cys peroxiredoxin (1-cysPrx), a member of the peroxiredoxin superfamily which protect cells against membrane oxidation through glutathione (GSH)-dependent reduction of phospholipid hydroperoxides to corresponding alcohols. The C-terminal domain is crucial for providing the extra cysteine necessary for dimerization of the whole molecule. Loss of the enzyme's peroxidase activity is associated with oxidation of the catalytic cysteine, upstream of this domain; and glutathionylation, presumably through its disruption of protein structure, facilitates access for GSH, resulting in spontaneous reduction of the mixed disulfide to the sulfhydryl and consequent activation of the enzyme. The domain is associated with family AhpC-TSA, pfam00578, which carries the catalytic cysteine.


Pssm-ID: 431271  Cd Length: 40  Bit Score: 57.21  E-value: 2.23e-11
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 13542859   219 AFQFVETHGEVCPANWTPESPTIKPSPT----ASKEYFEK 254
Cdd:pfam10417   1 ALQFVDKHGVVCPANWRPGDKVIVPPPAtqeeAVKRYLEG 40
bcp PRK09437
thioredoxin-dependent thiol peroxidase; Reviewed
80-199 5.27e-09

thioredoxin-dependent thiol peroxidase; Reviewed


Pssm-ID: 181857  Cd Length: 154  Bit Score: 53.79  E-value: 5.27e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13542859   80 NGEfkELSLDDFKGKYLVLFFYPLDFTFVCPTEIVAFSDKANEFHDVNCEVVAVSVD-----SHFSHlawintpRKNggl 154
Cdd:PRK09437  19 DGE--QVSLTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDkpeklSRFAE-------KEL--- 86
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 13542859  155 ghMNITLLSDITKQISRDYGVLLESA-------GIAlRGLFIIDPNGVVKHL 199
Cdd:PRK09437  87 --LNFTLLSDEDHQVAEQFGVWGEKKfmgktydGIH-RISFLIDADGKIEHV 135
TrxA COG0526
Thiol-disulfide isomerase or thioredoxin [Posttranslational modification, protein turnover, ...
65-198 5.52e-08

Thiol-disulfide isomerase or thioredoxin [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440292 [Multi-domain]  Cd Length: 139  Bit Score: 50.46  E-value: 5.52e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13542859  65 AVTQHAPYFKGTAVvngEFKELSLDDFKGKYLVLFFY-----PldftfvCPTEIVAFSDKANEFHDVncEVVAVSVDSHF 139
Cdd:COG0526   3 AVGKPAPDFTLTDL---DGKPLSLADLKGKPVLVNFWatwcpP------CRAEMPVLKELAEEYGGV--VFVGVDVDENP 71
                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 13542859 140 ShlAWINTPRKNGglghMNITLLSDITKQISRDYGVllesagialRGL---FIIDPNGVVKH 198
Cdd:COG0526  72 E--AVKAFLKELG----LPYPVLLDPDGELAKAYGV---------RGIpttVLIDKDGKIVA 118
TlpA_like_family cd02966
TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are ...
82-198 5.14e-06

TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.


Pssm-ID: 239264 [Multi-domain]  Cd Length: 116  Bit Score: 44.53  E-value: 5.14e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13542859  82 EFKELSLDDFKGKYLVLFFY-----PldftfvCPTEIVAFSDKANEFHDVNCEVVAVSVDSHFSH--LAWIntpRKNGgl 154
Cdd:cd02966   8 DGKPVSLSDLKGKVVLVNFWaswcpP------CRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAavKAFL---KKYG-- 76
                        90       100       110       120
                ....*....|....*....|....*....|....*....|....
gi 13542859 155 ghMNITLLSDITKQISRDYGVllesagIALRGLFIIDPNGVVKH 198
Cdd:cd02966  77 --ITFPVLLDPDGELAKAYGV------RGLPTTFLIDRDGRIRA 112
PRX5_like cd03013
Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, ...
79-201 1.90e-04

Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases, it is assumed that the oxidized cysteine is directly resolved by an external small-molecule or protein reductant, typical of a 1-cys PRX. In the case of the H. influenza PRX5 hybrid, the resolving glutaredoxin domain is on the same protein chain as PRX. PRX5 homodimers show an A-type interface, similar to atypical 2-cys PRXs.


Pssm-ID: 239311 [Multi-domain]  Cd Length: 155  Bit Score: 40.62  E-value: 1.90e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13542859  79 VNGEFKELSLDD-FKGKYLVLFFYPLDFTFVCP-TEIVAFSDKANEFHD--VNcEVVAVSVDSHFSHLAWintPRKNGGL 154
Cdd:cd03013  14 VPGPPNPVNLSElFKGKKVVIFGVPGAFTPTCSaQHLPGYVENADELKAkgVD-EVICVSVNDPFVMKAW---GKALGAK 89
                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|..
gi 13542859 155 GHmnITLLSDITKQISRDYGVLLESAGIAL-----RGLFIIDpNGVVKHLSV 201
Cdd:cd03013  90 DK--IRFLADGNGEFTKALGLTLDLSAAGGgirskRYALIVD-DGKVKYLFV 138
Thioredoxin_8 pfam13905
Thioredoxin-like; Thioredoxins are small enzymes that participate in redox reactions, via the ...
93-196 2.50e-04

Thioredoxin-like; Thioredoxins are small enzymes that participate in redox reactions, via the reversible oxidation of an active centre disulfide bond.


Pssm-ID: 464033 [Multi-domain]  Cd Length: 95  Bit Score: 39.21  E-value: 2.50e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13542859    93 GKYLVLFFYPLDftfvCPtEIVAFSDKANEFHDV-----NCEVVAVSVDShfSHLAWINTPRKNGGlGHMNITLLSDITK 167
Cdd:pfam13905   1 GKVVLLYFGASW----CK-PCRRFTPLLKELYEKlkkkkNVEIVFVSLDR--DLEEFKDYLKKMPK-DWLSVPFDDDERN 72
                          90       100
                  ....*....|....*....|....*....
gi 13542859   168 QISRDYGVLlesagiALRGLFIIDPNGVV 196
Cdd:pfam13905  73 ELKRKYGVN------AIPTLVLLDPNGEV 95
Sco1 COG1999
Cytochrome oxidase Cu insertion factor, SCO1/SenC/PrrC family [Posttranslational modification, ...
84-219 3.06e-04

Cytochrome oxidase Cu insertion factor, SCO1/SenC/PrrC family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 441602  Cd Length: 156  Bit Score: 40.27  E-value: 3.06e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13542859  84 KELSLDDFKGKYLVLFFyplDFTF---VCPTEIVAFSD-----KANEFHDVNceVVAVSVDSHF-------SHLAWINTP 148
Cdd:COG1999  11 KPVTLADLRGKPVLVFF---GYTScpdVCPTTLANLAQvqealGEDGGDDVQ--VLFISVDPERdtpevlkAYAEAFGAP 85
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13542859 149 rkngglghmNITLLS---DITKQISRDYGVLLE-----------SAGIalrglFIIDPNGVVKHLsvndLPVGRSVEETL 214
Cdd:COG1999  86 ---------RWIGLTgdpEEIAALAKAFGVYYEkvpdgdytfdhSAAV-----YLVDPDGRLRGY----YPAGEDPEELA 147

                ....*
gi 13542859 215 RLVKA 219
Cdd:COG1999 148 ADLKA 152
SCO cd02968
SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to ...
84-196 8.79e-04

SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properties of Sco1 implies that it participates in signaling events rather than functioning as a chaperone that transfers copper to COX II.


Pssm-ID: 239266  Cd Length: 142  Bit Score: 38.74  E-value: 8.79e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13542859  84 KELSLDDFKGKYLVLFFYpldFTF---VCPTEIVAFSD-----KANEFHDVncEVVAVSVD-------------SHFsHL 142
Cdd:cd02968  13 RPVTLSDLKGKPVLVYFG---YTHcpdVCPTTLANLAQalkqlGADGGDDV--QVVFISVDperdtpevlkayaKAF-GP 86
                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 13542859 143 AWIntprkngGLghmniTLLSDITKQISRDYGVLLESAGIALRG--------LFIIDPNGVV 196
Cdd:cd02968  87 GWI-------GL-----TGTPEEIEALAKAFGVYYEKVPEDDGDylvdhsaaIYLVDPDGKL 136
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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