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Conserved domains on  [gi|21619786|gb|AAH32706|]
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C6orf223 protein [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF5550 super family cl39235
Family of unknown function (DUF5550); This is a family of unknown function found in primates.
 5-103 2.80e-42

Family of unknown function (DUF5550); This is a family of unknown function found in primates.


The actual alignment was detected with superfamily member pfam17704:

Pssm-ID: 465464  Cd Length: 123  Bit Score: 139.22  E-value: 2.80e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21619786     5 FHQKTPRHKQPTLLMVRASRRSGKTSAVLKAGRQSVSGRKNSTSKDLVTLGASSLREERGHPLHPRHRKAVHLRTRGRTR 84
Cdd:pfam17704  25 LRRKTPRHKQPILLMVRASRRSGETSAVLKAGRQSVSGRKNSTSKDLVTLGASSLREERGHPLHPRHGKAVHLRTRGRTR 104

                          90
                  ....*....|....*....
gi 21619786    85 GWVQTLARMSRRTRGPVER 103
Cdd:pfam17704 105 GWVQTLARMSRRTRGPAER 123
 
Name Accession Description Interval E-value
DUF5550 pfam17704
Family of unknown function (DUF5550); This is a family of unknown function found in primates.
 5-103 2.80e-42

Family of unknown function (DUF5550); This is a family of unknown function found in primates.


Pssm-ID: 465464  Cd Length: 123  Bit Score: 139.22  E-value: 2.80e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21619786     5 FHQKTPRHKQPTLLMVRASRRSGKTSAVLKAGRQSVSGRKNSTSKDLVTLGASSLREERGHPLHPRHRKAVHLRTRGRTR 84
Cdd:pfam17704  25 LRRKTPRHKQPILLMVRASRRSGETSAVLKAGRQSVSGRKNSTSKDLVTLGASSLREERGHPLHPRHGKAVHLRTRGRTR 104

                          90
                  ....*....|....*....
gi 21619786    85 GWVQTLARMSRRTRGPVER 103
Cdd:pfam17704 105 GWVQTLARMSRRTRGPAER 123
 
Name Accession Description Interval E-value
DUF5550 pfam17704
Family of unknown function (DUF5550); This is a family of unknown function found in primates.
 5-103 2.80e-42

Family of unknown function (DUF5550); This is a family of unknown function found in primates.


Pssm-ID: 465464  Cd Length: 123  Bit Score: 139.22  E-value: 2.80e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21619786     5 FHQKTPRHKQPTLLMVRASRRSGKTSAVLKAGRQSVSGRKNSTSKDLVTLGASSLREERGHPLHPRHRKAVHLRTRGRTR 84
Cdd:pfam17704  25 LRRKTPRHKQPILLMVRASRRSGETSAVLKAGRQSVSGRKNSTSKDLVTLGASSLREERGHPLHPRHGKAVHLRTRGRTR 104

                          90
                  ....*....|....*....
gi 21619786    85 GWVQTLARMSRRTRGPVER 103
Cdd:pfam17704 105 GWVQTLARMSRRTRGPAER 123
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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