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Conserved domains on  [gi|25304092|gb|AAH40161|]
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Zinc finger protein 70 [Homo sapiens]

Protein Classification

C2H2-type zinc finger protein( domain architecture ID 11472214)

Cys2His2 (C2H2)-type zinc finger protein may be involved in transcriptional regulation

CATH:  3.30.160.60
Gene Ontology:  GO:0008270|GO:0003677
PubMed:  11361095|22803940
SCOP:  4003583

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
COG5048 COG5048
FOG: Zn-finger [General function prediction only];
138-442 3.43e-08

FOG: Zn-finger [General function prediction only];


:

Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 55.47  E-value: 3.43e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25304092 138 KPYACRECGKAFSQSSHLLRHLVIHTGEKPYEC--CECGKAFSQSSHLLRHQIIHTGEKPYECR---------------- 199
Cdd:COG5048  32 RPDSCPNCTDSFSRLEHLTRHIRSHTGEKPSQCsySGCDKSFSRPLELSRHLRTHHNNPSDLNSkslplsnskassssls 111

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25304092 200 ECGKAFRQSSALTQH--------QKIHTGKRPYECREC---------------------------GKDFSRSSSLRKHER 244
Cdd:COG5048 112 SSSSNSNDNNLLSSHslppssrdPQLPDLLSISNLRNNplpgnnsssvntpqsnslhpplpanslSKDPSSNLSLLISSN 191

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25304092 245 IHTGERPYQCKECGKSFN-----------------------------------QSSGLSQHRKIHTLKKPHECDlcGKAF 289
Cdd:COG5048 192 VSTSIPSSSENSPLSSSYsipssssdqnlensssslplttnsqlspksllsqsPSSLSSSDSSSSASESPRSSL--PTAS 269

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25304092 290 CHRSHLIRH-QRIHTGK-KPYKCDECGKAFSQSSNLIEHRKT--HTGE--KPYKC--QKCGKAFSQSSSLIEHQRIHTGE 361
Cdd:COG5048 270 SQSSSPNESdSSSEKGFsLPIKSKQCNISFSRSSPLTRHLRSvnHSGEslKPFSCpySLCGKLFSRNDALKRHILLHTSI 349

                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25304092 362 KPYECC--QCGKAF------CHSSALIQHQRIHTGKKPYTC--ECGKAFRHRSALIEHYKTHTREKPYVCN--LCGKSFR 429
Cdd:COG5048 350 SPAKEKllNSSSKFspllnnEPPQSLQQYKDLKNDKKSETLsnSCIRNFKRDSNLSLHIITHLSFRPYNCKnpPCSKSFN 429

                       410
                ....*....|...
gi 25304092 430 GSSHLIRHQKIHS 442
Cdd:COG5048 430 RHYNLIPHKKIHT 442
 
Name Accession Description Interval E-value
COG5048 COG5048
FOG: Zn-finger [General function prediction only];
138-442 3.43e-08

FOG: Zn-finger [General function prediction only];


Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 55.47  E-value: 3.43e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25304092 138 KPYACRECGKAFSQSSHLLRHLVIHTGEKPYEC--CECGKAFSQSSHLLRHQIIHTGEKPYECR---------------- 199
Cdd:COG5048  32 RPDSCPNCTDSFSRLEHLTRHIRSHTGEKPSQCsySGCDKSFSRPLELSRHLRTHHNNPSDLNSkslplsnskassssls 111

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25304092 200 ECGKAFRQSSALTQH--------QKIHTGKRPYECREC---------------------------GKDFSRSSSLRKHER 244
Cdd:COG5048 112 SSSSNSNDNNLLSSHslppssrdPQLPDLLSISNLRNNplpgnnsssvntpqsnslhpplpanslSKDPSSNLSLLISSN 191

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25304092 245 IHTGERPYQCKECGKSFN-----------------------------------QSSGLSQHRKIHTLKKPHECDlcGKAF 289
Cdd:COG5048 192 VSTSIPSSSENSPLSSSYsipssssdqnlensssslplttnsqlspksllsqsPSSLSSSDSSSSASESPRSSL--PTAS 269

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25304092 290 CHRSHLIRH-QRIHTGK-KPYKCDECGKAFSQSSNLIEHRKT--HTGE--KPYKC--QKCGKAFSQSSSLIEHQRIHTGE 361
Cdd:COG5048 270 SQSSSPNESdSSSEKGFsLPIKSKQCNISFSRSSPLTRHLRSvnHSGEslKPFSCpySLCGKLFSRNDALKRHILLHTSI 349

                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25304092 362 KPYECC--QCGKAF------CHSSALIQHQRIHTGKKPYTC--ECGKAFRHRSALIEHYKTHTREKPYVCN--LCGKSFR 429
Cdd:COG5048 350 SPAKEKllNSSSKFspllnnEPPQSLQQYKDLKNDKKSETLsnSCIRNFKRDSNLSLHIITHLSFRPYNCKnpPCSKSFN 429

                       410
                ....*....|...
gi 25304092 430 GSSHLIRHQKIHS 442
Cdd:COG5048 430 RHYNLIPHKKIHT 442
zf-H2C2_2 pfam13465
Zinc-finger double domain;
294-319 4.89e-05

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 40.05  E-value: 4.89e-05
                          10        20
                  ....*....|....*....|....*.
gi 25304092   294 HLIRHQRIHTGKKPYKCDECGKAFSQ 319
Cdd:pfam13465   1 NLKRHMRTHTGEKPYKCPECGKSFKS 26
 
Name Accession Description Interval E-value
COG5048 COG5048
FOG: Zn-finger [General function prediction only];
138-442 3.43e-08

FOG: Zn-finger [General function prediction only];


Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 55.47  E-value: 3.43e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25304092 138 KPYACRECGKAFSQSSHLLRHLVIHTGEKPYEC--CECGKAFSQSSHLLRHQIIHTGEKPYECR---------------- 199
Cdd:COG5048  32 RPDSCPNCTDSFSRLEHLTRHIRSHTGEKPSQCsySGCDKSFSRPLELSRHLRTHHNNPSDLNSkslplsnskassssls 111

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25304092 200 ECGKAFRQSSALTQH--------QKIHTGKRPYECREC---------------------------GKDFSRSSSLRKHER 244
Cdd:COG5048 112 SSSSNSNDNNLLSSHslppssrdPQLPDLLSISNLRNNplpgnnsssvntpqsnslhpplpanslSKDPSSNLSLLISSN 191

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25304092 245 IHTGERPYQCKECGKSFN-----------------------------------QSSGLSQHRKIHTLKKPHECDlcGKAF 289
Cdd:COG5048 192 VSTSIPSSSENSPLSSSYsipssssdqnlensssslplttnsqlspksllsqsPSSLSSSDSSSSASESPRSSL--PTAS 269

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25304092 290 CHRSHLIRH-QRIHTGK-KPYKCDECGKAFSQSSNLIEHRKT--HTGE--KPYKC--QKCGKAFSQSSSLIEHQRIHTGE 361
Cdd:COG5048 270 SQSSSPNESdSSSEKGFsLPIKSKQCNISFSRSSPLTRHLRSvnHSGEslKPFSCpySLCGKLFSRNDALKRHILLHTSI 349

                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25304092 362 KPYECC--QCGKAF------CHSSALIQHQRIHTGKKPYTC--ECGKAFRHRSALIEHYKTHTREKPYVCN--LCGKSFR 429
Cdd:COG5048 350 SPAKEKllNSSSKFspllnnEPPQSLQQYKDLKNDKKSETLsnSCIRNFKRDSNLSLHIITHLSFRPYNCKnpPCSKSFN 429

                       410
                ....*....|...
gi 25304092 430 GSSHLIRHQKIHS 442
Cdd:COG5048 430 RHYNLIPHKKIHT 442
COG5048 COG5048
FOG: Zn-finger [General function prediction only];
171-437 1.52e-07

FOG: Zn-finger [General function prediction only];


Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 53.55  E-value: 1.52e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25304092 171 CECGKAFSQSSHLLRHQIIHTGEKPYECRECGKAFRQSSALTqHQKIHTGKRPYECRECGKDFSRSSSLRKHERIHTGER 250
Cdd:COG5048 175 SLSKDPSSNLSLLISSNVSTSIPSSSENSPLSSSYSIPSSSS-DQNLENSSSSLPLTTNSQLSPKSLLSQSPSSLSSSDS 253

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25304092 251 PYQCKECGKSFNQSSGLSQHRKIHTL-------KKPHECDLCGKAFCHRSHLIRHQR--IHTGK--KPYKCDE--CGKAF 317
Cdd:COG5048 254 SSSASESPRSSLPTASSQSSSPNESDsssekgfSLPIKSKQCNISFSRSSPLTRHLRsvNHSGEslKPFSCPYslCGKLF 333

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25304092 318 SQSSNLIEHRKTHTGEKPYKC--QKCGKAFSQSS-----SLIEHQRIHTGEKPYECC-QCGKAFCHSSALIQHQRI-HTG 388
Cdd:COG5048 334 SRNDALKRHILLHTSISPAKEklLNSSSKFSPLLnneppQSLQQYKDLKNDKKSETLsNSCIRNFKRDSNLSLHIItHLS 413

                       250       260       270       280       290
                ....*....|....*....|....*....|....*....|....*....|..
gi 25304092 389 KKPYTCE---CGKAFRHRSALIEHYKTHTREKPYVCNLCgKSFRGSSHLIRH 437
Cdd:COG5048 414 FRPYNCKnppCSKSFNRHYNLIPHKKIHTNHAPLLCSIL-KSFRRDLDLSNH 464
COG5048 COG5048
FOG: Zn-finger [General function prediction only];
166-446 1.13e-06

FOG: Zn-finger [General function prediction only];


Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 50.85  E-value: 1.13e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25304092 166 KPYECCECGKAFSQSSHLLRHQIIHTGEKPYECR--ECGKAFRQSSALTQHQKIHTGKRPYECRECGKDFSRSSSLRKHE 243
Cdd:COG5048  32 RPDSCPNCTDSFSRLEHLTRHIRSHTGEKPSQCSysGCDKSFSRPLELSRHLRTHHNNPSDLNSKSLPLSNSKASSSSLS 111

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25304092 244 RIHTgERPYQCKECGKSFNQSSGLSQHRKIHTLKKPHECDLcgkafcHRSHLIRHQRIHTGKKPYKCD---ECGKAFSQS 320
Cdd:COG5048 112 SSSS-NSNDNNLLSSHSLPPSSRDPQLPDLLSISNLRNNPL------PGNNSSSVNTPQSNSLHPPLPansLSKDPSSNL 184

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25304092 321 SNLIEHRKTHTGEKPYKCQKCGKAFSQSSSLIEHQRIH-TGEKPYECCQCGKAfCHSSALIQHQRIHTGKKPYTCEC--- 396
Cdd:COG5048 185 SLLISSNVSTSIPSSSENSPLSSSYSIPSSSSDQNLENsSSSLPLTTNSQLSP-KSLLSQSPSSLSSSDSSSSASESprs 263

                       250       260       270       280       290
                ....*....|....*....|....*....|....*....|....*....|....*.
gi 25304092 397 --GKAFRHRSALIEHY--KTHTREKPYVCNLCGKSFRGSSHLIRHQ--KIHSGEKL 446
Cdd:COG5048 264 slPTASSQSSSPNESDssSEKGFSLPIKSKQCNISFSRSSPLTRHLrsVNHSGESL 319
COG5048 COG5048
FOG: Zn-finger [General function prediction only];
277-350 9.32e-06

FOG: Zn-finger [General function prediction only];


Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 47.77  E-value: 9.32e-06
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 25304092 277 KKPHECDLCGKAFCHRSHLIRHQRIHTGKKPYKC--DECGKAFSQSSNLIEHRKTHTGEKPYKCQKCGKAFSQSSS 350
Cdd:COG5048  31 PRPDSCPNCTDSFSRLEHLTRHIRSHTGEKPSQCsySGCDKSFSRPLELSRHLRTHHNNPSDLNSKSLPLSNSKAS 106
zf-H2C2_2 pfam13465
Zinc-finger double domain;
294-319 4.89e-05

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 40.05  E-value: 4.89e-05
                          10        20
                  ....*....|....*....|....*.
gi 25304092   294 HLIRHQRIHTGKKPYKCDECGKAFSQ 319
Cdd:pfam13465   1 NLKRHMRTHTGEKPYKCPECGKSFKS 26
zf-H2C2_2 pfam13465
Zinc-finger double domain;
238-263 6.19e-05

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 39.66  E-value: 6.19e-05
                          10        20
                  ....*....|....*....|....*.
gi 25304092   238 SLRKHERIHTGERPYQCKECGKSFNQ 263
Cdd:pfam13465   1 NLKRHMRTHTGEKPYKCPECGKSFKS 26
COG5048 COG5048
FOG: Zn-finger [General function prediction only];
305-371 8.21e-05

FOG: Zn-finger [General function prediction only];


Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 44.69  E-value: 8.21e-05
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 25304092 305 KKPYKCDECGKAFSQSSNLIEHRKTHTGEKPYKC--QKCGKAFSQSSSLIEHQRIHTGEKPYECCQCGK 371
Cdd:COG5048  31 PRPDSCPNCTDSFSRLEHLTRHIRSHTGEKPSQCsySGCDKSFSRPLELSRHLRTHHNNPSDLNSKSLP 99
SFP1 COG5189
Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division ...
 248-331 1.73e-04

Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning];


Pssm-ID: 227516 [Multi-domain]  Cd Length: 423  Bit Score: 43.55  E-value: 1.73e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25304092 248 GERPYQCK--ECGKSFNQSSGLSQHRKI-HTLKKPHEcdlcgkafchRSHLIRHQRIHTGKKPYKCDECGKAFSQSSNLI 324
Cdd:COG5189 346 DGKPYKCPveGCNKKYKNQNGLKYHMLHgHQNQKLHE----------NPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLK 415


                ....*..
gi 25304092 325 EHRKTHT 331
Cdd:COG5189 416 YHRKHSH 422
zf-H2C2_2 pfam13465
Zinc-finger double domain;
322-347 3.34e-04

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 37.74  E-value: 3.34e-04
                          10        20
                  ....*....|....*....|....*.
gi 25304092   322 NLIEHRKTHTGEKPYKCQKCGKAFSQ 347
Cdd:pfam13465   1 NLKRHMRTHTGEKPYKCPECGKSFKS 26
zf-H2C2_2 pfam13465
Zinc-finger double domain;
182-207 3.44e-04

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 37.74  E-value: 3.44e-04
                          10        20
                  ....*....|....*....|....*.
gi 25304092   182 HLLRHQIIHTGEKPYECRECGKAFRQ 207
Cdd:pfam13465   1 NLKRHMRTHTGEKPYKCPECGKSFKS 26
SFP1 COG5189
Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division ...
 192-276 4.64e-04

Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning];


Pssm-ID: 227516 [Multi-domain]  Cd Length: 423  Bit Score: 42.40  E-value: 4.64e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25304092 192 GEKPYECR--ECGKAFRQSSALTQHqKIHTgkrpyecrECGKDFSRSSSLRKHERIHTGERPYQCKECGKSFNQSSGLSQ 269
Cdd:COG5189 346 DGKPYKCPveGCNKKYKNQNGLKYH-MLHG--------HQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKY 416


                ....*..
gi 25304092 270 HRKIHTL 276
Cdd:COG5189 417 HRKHSHD 423
zf-H2C2_2 pfam13465
Zinc-finger double domain;
210-235 1.46e-03

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 35.81  E-value: 1.46e-03
                          10        20
                  ....*....|....*....|....*.
gi 25304092   210 ALTQHQKIHTGKRPYECRECGKDFSR 235
Cdd:pfam13465   1 NLKRHMRTHTGEKPYKCPECGKSFKS 26
zf-C2H2 pfam00096
Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two ...
 308-330 2.86e-03

Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter.


Pssm-ID: 395048 [Multi-domain]  Cd Length: 23  Bit Score: 34.97  E-value: 2.86e-03
                          10        20
                  ....*....|....*....|...
gi 25304092   308 YKCDECGKAFSQSSNLIEHRKTH 330
Cdd:pfam00096   1 YKCPDCGKSFSRKSNLKRHLRTH 23
zf-C2H2 pfam00096
Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two ...
 280-302 4.28e-03

Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter.


Pssm-ID: 395048 [Multi-domain]  Cd Length: 23  Bit Score: 34.58  E-value: 4.28e-03
                          10        20
                  ....*....|....*....|...
gi 25304092   280 HECDLCGKAFCHRSHLIRHQRIH 302
Cdd:pfam00096   1 YKCPDCGKSFSRKSNLKRHLRTH 23
zf-C2H2 pfam00096
Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two ...
 336-358 4.86e-03

Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter.


Pssm-ID: 395048 [Multi-domain]  Cd Length: 23  Bit Score: 34.20  E-value: 4.86e-03
                          10        20
                  ....*....|....*....|...
gi 25304092   336 YKCQKCGKAFSQSSSLIEHQRIH 358
Cdd:pfam00096   1 YKCPDCGKSFSRKSNLKRHLRTH 23
zf-H2C2_2 pfam13465
Zinc-finger double domain;
154-179 5.27e-03

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 34.27  E-value: 5.27e-03
                          10        20
                  ....*....|....*....|....*.
gi 25304092   154 HLLRHLVIHTGEKPYECCECGKAFSQ 179
Cdd:pfam13465   1 NLKRHMRTHTGEKPYKCPECGKSFKS 26
SFP1 COG5189
Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division ...
 360-442 5.35e-03

Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning];


Pssm-ID: 227516 [Multi-domain]  Cd Length: 423  Bit Score: 38.93  E-value: 5.35e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25304092 360 GEKPYEC--CQCGKAFCHSSALIQHqRIHTGKKPYTCECGKAFRHRSALIEhykthtrEKPYVCNLCGKSFRGSSHLIRH 437
Cdd:COG5189 346 DGKPYKCpvEGCNKKYKNQNGLKYH-MLHGHQNQKLHENPSPEKMNIFSAK-------DKPYRCEVCDKRYKNLNGLKYH 417


                ....*
gi 25304092 438 QKiHS 442
Cdd:COG5189 418 RK-HS 421
zf-C2H2 pfam00096
Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two ...
 419-441 6.03e-03

Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter.


Pssm-ID: 395048 [Multi-domain]  Cd Length: 23  Bit Score: 34.20  E-value: 6.03e-03
                          10        20
                  ....*....|....*....|...
gi 25304092   419 YVCNLCGKSFRGSSHLIRHQKIH 441
Cdd:pfam00096   1 YKCPDCGKSFSRKSNLKRHLRTH 23
COG5048 COG5048
FOG: Zn-finger [General function prediction only];
221-442 8.61e-03

FOG: Zn-finger [General function prediction only];


Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 38.52  E-value: 8.61e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25304092 221 KRPYECRECGKDFSRSSSLRKHERIHTGERPYQC--KECGKSFNQSSGLSQHRKIHTLKKPHEC-DLCGKAFCHRSHLIR 297
Cdd:COG5048  31 PRPDSCPNCTDSFSRLEHLTRHIRSHTGEKPSQCsySGCDKSFSRPLELSRHLRTHHNNPSDLNsKSLPLSNSKASSSSL 110

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25304092 298 HQRIHTGKKPYKCDECGKAFSQSSNLIEHRKTHTGEKPYKCQKCGKAF--SQSSSLIEHQRIHTgekpyecCQCGKAFCH 375
Cdd:COG5048 111 SSSSSNSNDNNLLSSHSLPPSSRDPQLPDLLSISNLRNNPLPGNNSSSvnTPQSNSLHPPLPAN-------SLSKDPSSN 183

                       170       180       190       200       210       220
                ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 25304092 376 SSALIQHQRIHTGKKPYTCECGKAFRHRSALIEHYKTHTREKPYVCNLCGKSFRGSSHLIRHQKIHS 442
Cdd:COG5048 184 LSLLISSNVSTSIPSSSENSPLSSSYSIPSSSSDQNLENSSSSLPLTTNSQLSPKSLLSQSPSSLSS 250
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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