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Conserved domains on  [gi|29145014|gb|AAH49097|]
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Lysosomal-associated membrane protein 1 [Mus musculus]

Protein Classification

lysosome-associated membrane glycoprotein( domain architecture ID 15859493)

lysosome-associated membrane glycoprotein (LAMP) may play roles in phagocytosis, autophagy, lipid transport, and aging; such as human LAMP1 that plays an important role in lysosome biogenesis, lysosomal pH regulation, autophagy and cholesterol homeostasis; contains a EGFR-like transmembrane domain

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Lamp pfam01299
Lysosome-associated membrane glycoprotein (Lamp);
208-354 4.71e-68

Lysosome-associated membrane glycoprotein (Lamp);


:

Pssm-ID: 460152  Cd Length: 148  Bit Score: 212.05  E-value: 4.71e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 29145014   208 PTVSKYNVTGNNGTCLLASMALQLNITYLKKDNKTVTRAFNISPNDT-SSGSCGINLVTLKVENKNRALELQFGMNASSS 286
Cdd:pfam01299   1 PEVGNYNVTNGNGTCLLAEMGLQLNVTYKKKDNKTVQRVFNINPNTTkASGSCGGQSATLLLNFENGTLTFTFTKNASEN 80
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 29145014   287 LFFLQGVRLNMTLPDALVPTFSISNHSLKALQATVGNSYKCNTEEHIFVSKMLSLNVFSVQVQAFKVD 354
Cdd:pfam01299  81 KFYLSEVNVSLTLPDAKGPTFSASNSSLSELQAPLGSSYMCNKEQSIQVSPAFSLNTFNLQVQAFKVE 148
TM_EGFR-like cd12087
Transmembrane domain of the Epidermal Growth Factor Receptor family of Protein Tyrosine ...
371-400 5.13e-04

Transmembrane domain of the Epidermal Growth Factor Receptor family of Protein Tyrosine Kinases; PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. They are receptor PTKs (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane (TM) helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. They are activated by ligand-induced dimerization, resulting in the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Collectively, they can recognize a variety of ligands including EGF, TGFalpha, and neuregulins, among others. All four subfamily members can form homo- or heterodimers. HER3 contains an impaired kinase domain and depends on its heterodimerization partner for activation. EGFR subfamily members are involved in signaling pathways leading to a broad range of cellular responses including cell proliferation, differentiation, migration, growth inhibition, and apoptosis. The TM domain not only serves as a membrane anchor, but also plays an important role in receptor dimerization and optimal activation. Mutations in the TM domain of EGFR family RTKs have been associated with increased breast cancer risk.


:

Pssm-ID: 213052  Cd Length: 38  Bit Score: 37.12  E-value: 5.13e-04
                        10        20        30
                ....*....|....*....|....*....|
gi 29145014 371 MLIPIAVGGALAGLVLIVLIAYLIGRKRSH 400
Cdd:cd12087   6 TSIAAGVVGGLLVLVILGLIVFLFRRRRHI 35
 
Name Accession Description Interval E-value
Lamp pfam01299
Lysosome-associated membrane glycoprotein (Lamp);
208-354 4.71e-68

Lysosome-associated membrane glycoprotein (Lamp);


Pssm-ID: 460152  Cd Length: 148  Bit Score: 212.05  E-value: 4.71e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 29145014   208 PTVSKYNVTGNNGTCLLASMALQLNITYLKKDNKTVTRAFNISPNDT-SSGSCGINLVTLKVENKNRALELQFGMNASSS 286
Cdd:pfam01299   1 PEVGNYNVTNGNGTCLLAEMGLQLNVTYKKKDNKTVQRVFNINPNTTkASGSCGGQSATLLLNFENGTLTFTFTKNASEN 80
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 29145014   287 LFFLQGVRLNMTLPDALVPTFSISNHSLKALQATVGNSYKCNTEEHIFVSKMLSLNVFSVQVQAFKVD 354
Cdd:pfam01299  81 KFYLSEVNVSLTLPDAKGPTFSASNSSLSELQAPLGSSYMCNKEQSIQVSPAFSLNTFNLQVQAFKVE 148
TM_EGFR-like cd12087
Transmembrane domain of the Epidermal Growth Factor Receptor family of Protein Tyrosine ...
371-400 5.13e-04

Transmembrane domain of the Epidermal Growth Factor Receptor family of Protein Tyrosine Kinases; PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. They are receptor PTKs (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane (TM) helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. They are activated by ligand-induced dimerization, resulting in the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Collectively, they can recognize a variety of ligands including EGF, TGFalpha, and neuregulins, among others. All four subfamily members can form homo- or heterodimers. HER3 contains an impaired kinase domain and depends on its heterodimerization partner for activation. EGFR subfamily members are involved in signaling pathways leading to a broad range of cellular responses including cell proliferation, differentiation, migration, growth inhibition, and apoptosis. The TM domain not only serves as a membrane anchor, but also plays an important role in receptor dimerization and optimal activation. Mutations in the TM domain of EGFR family RTKs have been associated with increased breast cancer risk.


Pssm-ID: 213052  Cd Length: 38  Bit Score: 37.12  E-value: 5.13e-04
                        10        20        30
                ....*....|....*....|....*....|
gi 29145014 371 MLIPIAVGGALAGLVLIVLIAYLIGRKRSH 400
Cdd:cd12087   6 TSIAAGVVGGLLVLVILGLIVFLFRRRRHI 35
 
Name Accession Description Interval E-value
Lamp pfam01299
Lysosome-associated membrane glycoprotein (Lamp);
208-354 4.71e-68

Lysosome-associated membrane glycoprotein (Lamp);


Pssm-ID: 460152  Cd Length: 148  Bit Score: 212.05  E-value: 4.71e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 29145014   208 PTVSKYNVTGNNGTCLLASMALQLNITYLKKDNKTVTRAFNISPNDT-SSGSCGINLVTLKVENKNRALELQFGMNASSS 286
Cdd:pfam01299   1 PEVGNYNVTNGNGTCLLAEMGLQLNVTYKKKDNKTVQRVFNINPNTTkASGSCGGQSATLLLNFENGTLTFTFTKNASEN 80
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 29145014   287 LFFLQGVRLNMTLPDALVPTFSISNHSLKALQATVGNSYKCNTEEHIFVSKMLSLNVFSVQVQAFKVD 354
Cdd:pfam01299  81 KFYLSEVNVSLTLPDAKGPTFSASNSSLSELQAPLGSSYMCNKEQSIQVSPAFSLNTFNLQVQAFKVE 148
TM_EGFR-like cd12087
Transmembrane domain of the Epidermal Growth Factor Receptor family of Protein Tyrosine ...
371-400 5.13e-04

Transmembrane domain of the Epidermal Growth Factor Receptor family of Protein Tyrosine Kinases; PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. They are receptor PTKs (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane (TM) helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. They are activated by ligand-induced dimerization, resulting in the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Collectively, they can recognize a variety of ligands including EGF, TGFalpha, and neuregulins, among others. All four subfamily members can form homo- or heterodimers. HER3 contains an impaired kinase domain and depends on its heterodimerization partner for activation. EGFR subfamily members are involved in signaling pathways leading to a broad range of cellular responses including cell proliferation, differentiation, migration, growth inhibition, and apoptosis. The TM domain not only serves as a membrane anchor, but also plays an important role in receptor dimerization and optimal activation. Mutations in the TM domain of EGFR family RTKs have been associated with increased breast cancer risk.


Pssm-ID: 213052  Cd Length: 38  Bit Score: 37.12  E-value: 5.13e-04
                        10        20        30
                ....*....|....*....|....*....|
gi 29145014 371 MLIPIAVGGALAGLVLIVLIAYLIGRKRSH 400
Cdd:cd12087   6 TSIAAGVVGGLLVLVILGLIVFLFRRRRHI 35
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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