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Conserved domains on  [gi|51859197|gb|AAH81998|]
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NEDD4 binding protein 2-like 2 [Rattus norvegicus]

Protein Classification

ATP-binding protein( domain architecture ID 12153064)

ATP-binding protein with an AAA (ATPases Associated with various cellular Activities) domain ; similar to Homo sapiens NEDD4-binding protein 2-like 1/2

CATH:  3.40.50.300
Gene Ontology:  GO:0005524|GO:0016887
PubMed:  15037234|18208389|17897320|18466635|16072036|11916378|15037233
SCOP:  2000039

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
AAA_33 pfam13671
AAA domain; This family of domains contain only a P-loop motif, that is characteriztic of the ...
 395-528 2.33e-20

AAA domain; This family of domains contain only a P-loop motif, that is characteriztic of the AAA superfamily. Many of the proteins in this family are just short fragments so there is no Walker B motif.


:

Pssm-ID: 463952 [Multi-domain]  Cd Length: 143  Bit Score: 87.37  E-value: 2.33e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51859197   395 LILLRGLPGSGKTTLSRILLGQsRDGIVFSTDDYF-----HHQDGYRYNVNQLGDAHDWNQNRAKQAIDQGRsPVIIDNT 469
Cdd:pfam13671   1 LILLVGLPGSGKSTLARRLLEE-LGAVRLSSDDERkrlfgEGRPSISYYTDATDRTYERLHELARIALRAGR-PVILDAT 78

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 51859197   470 NTQAWEMKPYVEMAIGKGYRVEFHEPETwwkfDPEELEKRNK---------HGVSRKKIAQMLDRYEF 528
Cdd:pfam13671  79 NLRRDERARLLALAREYGVPVRIVVFEA----PEEVLRERLAararaggdpSDVPEEVLDRQKARFEP 142
 
Name Accession Description Interval E-value
AAA_33 pfam13671
AAA domain; This family of domains contain only a P-loop motif, that is characteriztic of the ...
 395-528 2.33e-20

AAA domain; This family of domains contain only a P-loop motif, that is characteriztic of the AAA superfamily. Many of the proteins in this family are just short fragments so there is no Walker B motif.


Pssm-ID: 463952 [Multi-domain]  Cd Length: 143  Bit Score: 87.37  E-value: 2.33e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51859197   395 LILLRGLPGSGKTTLSRILLGQsRDGIVFSTDDYF-----HHQDGYRYNVNQLGDAHDWNQNRAKQAIDQGRsPVIIDNT 469
Cdd:pfam13671   1 LILLVGLPGSGKSTLARRLLEE-LGAVRLSSDDERkrlfgEGRPSISYYTDATDRTYERLHELARIALRAGR-PVILDAT 78

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 51859197   470 NTQAWEMKPYVEMAIGKGYRVEFHEPETwwkfDPEELEKRNK---------HGVSRKKIAQMLDRYEF 528
Cdd:pfam13671  79 NLRRDERARLLALAREYGVPVRIVVFEA----PEEVLRERLAararaggdpSDVPEEVLDRQKARFEP 142
COG4639 COG4639
Predicted kinase [General function prediction only];
395-527 1.45e-16

Predicted kinase [General function prediction only];


Pssm-ID: 443677 [Multi-domain]  Cd Length: 145  Bit Score: 76.79  E-value: 1.45e-16
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51859197 395 LILLRGLPGSGKTTLSRILLgqsRDGIVFSTDDyFHHQ--DGYRYNVNQlGDAHDWNQNRAKQAIDQGRsPVIIDNTNTQ 472
Cdd:COG4639   4 LVVLIGLPGSGKSTFARRLF---APTEVVSSDD-IRALlgGDENDQSAW-GDVFQLAHEIARARLRAGR-LTVVDATNLQ 77

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 51859197 473 AWEMKPYVEMAIGKGYRVE---FHEPEtwwkfdpEELEKRNK---HGVSRKKIAQMLDRYE 527
Cdd:COG4639  78 REARRRLLALARAYGALVVavvLDVPL-------EVCLARNAardRQVPEEVIRRMLRRLR 131
pseT PHA02530
polynucleotide kinase; Provisional
 395-511 5.29e-09

polynucleotide kinase; Provisional


Pssm-ID: 222856 [Multi-domain]  Cd Length: 300  Bit Score: 57.72  E-value: 5.29e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51859197  395 LILLRGLPGSGKTTLSRILLGQSRDGIVFSTDDY----FHHQ--DGYRYNVNQLGDAHDWNQNRAKQAIDQGRSpVIIDN 468
Cdd:PHA02530   4 IILTVGVPGSGKSTWAREFAAKNPKAVNVNRDDLrqslFGHGewGEYKFTKEKEDLVTKAQEAAALAALKSGKS-VIISD 82

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 51859197  469 TNTQAWEMKPYVEMAigKGYRVEFHepETWWKFDPEELEKRNK 511
Cdd:PHA02530  83 TNLNPERRRKWKELA--KELGAEFE--EKVFDVPVEELVKRNR 121
PNK-3'Pase TIGR01663
polynucleotide 5'-kinase 3'-phosphatase; This model represents the metazoan 5 ...
 362-487 1.45e-03

polynucleotide 5'-kinase 3'-phosphatase; This model represents the metazoan 5'-polynucleotide-kinase-3'-phosphatase, PNKP, which is believed to be involved in repair of oxidative DNA damage. Removal of 3' phosphates is essential for the further processing of the break by DNA polymerases. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is replaced by a conserved arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Very close relatives of this domain are also found separate from the N- and C-terminal domains seen here, as in the 3'-phosphatase found in plants. The larger family of these domains is described by TIGR01664. Outside of the phosphatase domain is a P-loop ATP-binding motif associated with the kinase activity. The entry for the mouse homolog appears to be missing a large piece of sequence corresponding to the first conserved catalytic motif of the phosphatase domain as well as the conserved threonine of the second motif. Either this is a sequencing artifact or this may represent a pseudo- or non-functional gene. Note that the EC number for the kinase function is: 2.7.1.78


Pssm-ID: 130724 [Multi-domain]  Cd Length: 526  Bit Score: 41.55  E-value: 1.45e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51859197   362 ECWQDPSMDMHNEADRfVNQCFQEDR-LNKLQKLLILLRGLPGSGKTTLSRILLgQSRdgivfstddyfhhqdGYRY-NV 439
Cdd:TIGR01663 338 AGFEKPAFDPRSVQDQ-GPLCDPDDLaLDDAPCEMVIAVGFPGAGKSHFCKKFF-QPA---------------GYKHvNA 400

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 51859197   440 NQLGDahdWNQ--NRAKQAIDQGRSpVIIDNTNTQAWEMKPYVEMAIGKG 487
Cdd:TIGR01663 401 DTLGS---TQNclTACERALDQGKR-CAIDNTNPDAASRAKFLQCARAAG 446
AAA smart00382
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ...
 396-468 1.96e-03

ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.


Pssm-ID: 214640 [Multi-domain]  Cd Length: 148  Bit Score: 38.89  E-value: 1.96e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51859197    396 ILLRGLPGSGKTTLSRILLGQ----SRDGIVFSTDDYFHHQDGYRYNVNQLGDAHDWNQ-NRAKQAIDQGRSP----VII 466
Cdd:smart00382   5 ILIVGPPGSGKTTLARALARElgppGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGeLRLRLALALARKLkpdvLIL 84


                   ..
gi 51859197    467 DN 468
Cdd:smart00382  85 DE 86
 
Name Accession Description Interval E-value
AAA_33 pfam13671
AAA domain; This family of domains contain only a P-loop motif, that is characteriztic of the ...
 395-528 2.33e-20

AAA domain; This family of domains contain only a P-loop motif, that is characteriztic of the AAA superfamily. Many of the proteins in this family are just short fragments so there is no Walker B motif.


Pssm-ID: 463952 [Multi-domain]  Cd Length: 143  Bit Score: 87.37  E-value: 2.33e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51859197   395 LILLRGLPGSGKTTLSRILLGQsRDGIVFSTDDYF-----HHQDGYRYNVNQLGDAHDWNQNRAKQAIDQGRsPVIIDNT 469
Cdd:pfam13671   1 LILLVGLPGSGKSTLARRLLEE-LGAVRLSSDDERkrlfgEGRPSISYYTDATDRTYERLHELARIALRAGR-PVILDAT 78

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 51859197   470 NTQAWEMKPYVEMAIGKGYRVEFHEPETwwkfDPEELEKRNK---------HGVSRKKIAQMLDRYEF 528
Cdd:pfam13671  79 NLRRDERARLLALAREYGVPVRIVVFEA----PEEVLRERLAararaggdpSDVPEEVLDRQKARFEP 142
COG4639 COG4639
Predicted kinase [General function prediction only];
395-527 1.45e-16

Predicted kinase [General function prediction only];


Pssm-ID: 443677 [Multi-domain]  Cd Length: 145  Bit Score: 76.79  E-value: 1.45e-16
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51859197 395 LILLRGLPGSGKTTLSRILLgqsRDGIVFSTDDyFHHQ--DGYRYNVNQlGDAHDWNQNRAKQAIDQGRsPVIIDNTNTQ 472
Cdd:COG4639   4 LVVLIGLPGSGKSTFARRLF---APTEVVSSDD-IRALlgGDENDQSAW-GDVFQLAHEIARARLRAGR-LTVVDATNLQ 77

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 51859197 473 AWEMKPYVEMAIGKGYRVE---FHEPEtwwkfdpEELEKRNK---HGVSRKKIAQMLDRYE 527
Cdd:COG4639  78 REARRRLLALARAYGALVVavvLDVPL-------EVCLARNAardRQVPEEVIRRMLRRLR 131
COG0645 COG0645
Predicted kinase, contains AAA domain [General function prediction only];
395-509 3.08e-11

Predicted kinase, contains AAA domain [General function prediction only];


Pssm-ID: 440410 [Multi-domain]  Cd Length: 164  Bit Score: 61.85  E-value: 3.08e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51859197 395 LILLRGLPGSGKTTLSRIlLGQSRDGIVFSTD--------DYFHHQDGYRyNVNQLGDAHDWnqNRAKQAIDQGRSpVII 466
Cdd:COG0645   1 LILVCGLPGSGKSTLARA-LAERLGAVRLRSDvvrkrlfgAGLAPLERSP-EATARTYARLL--ALARELLAAGRS-VIL 75

                        90       100       110       120
                ....*....|....*....|....*....|....*....|...
gi 51859197 467 DNTNTQAWEMKPYVEMAIGKGYRVEFHEPETwwkfDPEELEKR 509
Cdd:COG0645  76 DATFLRRAQREAFRALAEEAGAPFVLIWLDA----PEEVLRER 114
pseT PHA02530
polynucleotide kinase; Provisional
 395-511 5.29e-09

polynucleotide kinase; Provisional


Pssm-ID: 222856 [Multi-domain]  Cd Length: 300  Bit Score: 57.72  E-value: 5.29e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51859197  395 LILLRGLPGSGKTTLSRILLGQSRDGIVFSTDDY----FHHQ--DGYRYNVNQLGDAHDWNQNRAKQAIDQGRSpVIIDN 468
Cdd:PHA02530   4 IILTVGVPGSGKSTWAREFAAKNPKAVNVNRDDLrqslFGHGewGEYKFTKEKEDLVTKAQEAAALAALKSGKS-VIISD 82

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 51859197  469 TNTQAWEMKPYVEMAigKGYRVEFHepETWWKFDPEELEKRNK 511
Cdd:PHA02530  83 TNLNPERRRKWKELA--KELGAEFE--EKVFDVPVEELVKRNR 121
Kti12 COG4088
tRNA uridine 5-carbamoylmethylation protein Kti12 (Killer toxin insensitivity protein) ...
 395-474 3.54e-07

tRNA uridine 5-carbamoylmethylation protein Kti12 (Killer toxin insensitivity protein) [Translation, ribosomal structure and biogenesis, Defense mechanisms];


Pssm-ID: 443264 [Multi-domain]  Cd Length: 179  Bit Score: 50.50  E-value: 3.54e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51859197 395 LILLRGLPGSGKTTLSRILLGQ----SRDGIVFSTDDYFHHQdgyrYNVNQLGDAH-----DWNQNRAKQAIDQGRSpVI 465
Cdd:COG4088   6 LLILTGPPGSGKTTFAKALAQRlyaeGIAVALLHSDDFRRFL----VNESFPKETYeevveDVRTTTADNALDNGYS-VI 80


                ....*....
gi 51859197 466 IDNTNTQAW 474
Cdd:COG4088  81 VDGTFYYRS 89
KTI12 pfam08433
Chromatin associated protein KTI12; This is a family of chromatin associated proteins which ...
 395-527 2.80e-05

Chromatin associated protein KTI12; This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II. The Elongator complex has histone acetyltransferase activity.


Pssm-ID: 400643  Cd Length: 269  Bit Score: 46.13  E-value: 2.80e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51859197   395 LILLRGLPGSGKTT----LSRILLGQSRDGIVFSTDDYFHHQDGYRyNVNQLGDAHDWNQNRAKQAIDQGRSpVIIDNTN 470
Cdd:pfam08433   1 LVLLTGLPSSGKSTrakqLAKYLEESNYDVIVISDESLGIEKDDYK-DSAKEKFLRGSLRSAVKRDLSKNTI-VIVDSLN 78

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 51859197   471 tqawemkpYVemaigKGYRVEFH-----------------EPETWWKFDPEELEkrnKHGVSRKKIAQMLDRYE 527
Cdd:pfam08433  79 --------YI-----KGFRYELYciakaarttycvihckaPLDLCRKWNEERGQ---KSRYPDELLDALIQRYE 136
Zeta_toxin pfam06414
Zeta toxin; This family consists of several bacterial zeta toxin proteins. Zeta toxin is ...
 392-501 3.28e-05

Zeta toxin; This family consists of several bacterial zeta toxin proteins. Zeta toxin is thought to be part of a postregulational killing system in bacteria. It relies on antitoxin/toxin systems that secure stable inheritance of low and medium copy number plasmids during cell division and kill cells that have lost the plasmid.


Pssm-ID: 428926  Cd Length: 192  Bit Score: 45.05  E-value: 3.28e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51859197   392 QKLLILLRGLPGSGKTTLSRIL---LGQSRDGIVFSTDDY--FH-------HQDGYRYNVNQLGDAHDWNQNRAKQAIDQ 459
Cdd:pfam06414  10 RPKAILLGGQPGAGKTELARALldeLGRQGNVVRIDPDDFreLHphyrelqAADPKTASEYTQPDASRWVEKLLQHAIEN 89

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 51859197   460 GRSpVIIDNTNTQAWEMKPYVEMAIGKGYRVEFH----EPETWWKF 501
Cdd:pfam06414  90 GYN-IILEGTLRSPDVAKKIARALKAAGYRVEVAavaaPPELSWLG 134
AAA_18 pfam13238
AAA domain;
396-519 1.96e-04

AAA domain;


Pssm-ID: 433052 [Multi-domain]  Cd Length: 128  Bit Score: 41.65  E-value: 1.96e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51859197   396 ILLRGLPGSGKTTLSRILlgQSRDGIVFSTDDYFHHQDGYRYNVNQLGDAHDWNQNRAKQAIDqgrspviidntntqawE 475
Cdd:pfam13238   1 ILITGTPGVGKTTLAKEL--SKRLGFGDNVRDLALENGLVLGDDPETRESKRLDEDKLDRLLD----------------L 62

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 51859197   476 MKPYVEMAIGKGYRVEFH----EPETWWKF-------DPEELEKRNKH-GVSRKKI 519
Cdd:pfam13238  63 LEENAALEEGGNLIIDGHlaelEPERAKDLvgivlraSPEELLERLEKrGYEEAKI 118
Udk COG0572
Uridine kinase [Nucleotide transport and metabolism]; Uridine kinase is part of the Pathway ...
 394-448 2.88e-04

Uridine kinase [Nucleotide transport and metabolism]; Uridine kinase is part of the Pathway/BioSystem: Pyrimidine salvage


Pssm-ID: 440337 [Multi-domain]  Cd Length: 206  Bit Score: 42.13  E-value: 2.88e-04
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 51859197 394 LLILLRGLPGSGKTTLSRILLGQ--SRDGIVFSTDDYFHHQDGY----RYNVNQLG-DAHDW 448
Cdd:COG0572   8 RIIGIAGPSGSGKTTFARRLAEQlgADKVVVISLDDYYKDREHLpldeRGKPNFDHpEAFDL 69
PNK-3'Pase TIGR01663
polynucleotide 5'-kinase 3'-phosphatase; This model represents the metazoan 5 ...
 362-487 1.45e-03

polynucleotide 5'-kinase 3'-phosphatase; This model represents the metazoan 5'-polynucleotide-kinase-3'-phosphatase, PNKP, which is believed to be involved in repair of oxidative DNA damage. Removal of 3' phosphates is essential for the further processing of the break by DNA polymerases. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is replaced by a conserved arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Very close relatives of this domain are also found separate from the N- and C-terminal domains seen here, as in the 3'-phosphatase found in plants. The larger family of these domains is described by TIGR01664. Outside of the phosphatase domain is a P-loop ATP-binding motif associated with the kinase activity. The entry for the mouse homolog appears to be missing a large piece of sequence corresponding to the first conserved catalytic motif of the phosphatase domain as well as the conserved threonine of the second motif. Either this is a sequencing artifact or this may represent a pseudo- or non-functional gene. Note that the EC number for the kinase function is: 2.7.1.78


Pssm-ID: 130724 [Multi-domain]  Cd Length: 526  Bit Score: 41.55  E-value: 1.45e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51859197   362 ECWQDPSMDMHNEADRfVNQCFQEDR-LNKLQKLLILLRGLPGSGKTTLSRILLgQSRdgivfstddyfhhqdGYRY-NV 439
Cdd:TIGR01663 338 AGFEKPAFDPRSVQDQ-GPLCDPDDLaLDDAPCEMVIAVGFPGAGKSHFCKKFF-QPA---------------GYKHvNA 400

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 51859197   440 NQLGDahdWNQ--NRAKQAIDQGRSpVIIDNTNTQAWEMKPYVEMAIGKG 487
Cdd:TIGR01663 401 DTLGS---TQNclTACERALDQGKR-CAIDNTNPDAASRAKFLQCARAAG 446
AAA smart00382
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ...
 396-468 1.96e-03

ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.


Pssm-ID: 214640 [Multi-domain]  Cd Length: 148  Bit Score: 38.89  E-value: 1.96e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51859197    396 ILLRGLPGSGKTTLSRILLGQ----SRDGIVFSTDDYFHHQDGYRYNVNQLGDAHDWNQ-NRAKQAIDQGRSP----VII 466
Cdd:smart00382   5 ILIVGPPGSGKTTLARALARElgppGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGeLRLRLALALARKLkpdvLIL 84


                   ..
gi 51859197    467 DN 468
Cdd:smart00382  85 DE 86
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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