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Conserved domains on  [gi|58476537|gb|AAH89925|]
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Sf3b1 protein [Rattus norvegicus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
HSH155 super family cl26678
U2 snRNP spliceosome subunit [RNA processing and modification];
4-74 3.88e-18

U2 snRNP spliceosome subunit [RNA processing and modification];


The actual alignment was detected with superfamily member COG5181:

Pssm-ID: 227508 [Multi-domain]  Cd Length: 975  Bit Score: 76.53  E-value: 3.88e-18
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 58476537   4 LEGLRVAIGPCRMLQYCLQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYPrIYNDDKNTYIRyELDYIL 74
Cdd:COG5181 907 MESFATVLGSGAMMKYVQQGLFHPSSTVRKRYWTVYNIMYVFDSDAMVPCYP-VEEDLNPELAR-TLHICI 975
 
Name Accession Description Interval E-value
HSH155 COG5181
U2 snRNP spliceosome subunit [RNA processing and modification];
4-74 3.88e-18

U2 snRNP spliceosome subunit [RNA processing and modification];


Pssm-ID: 227508 [Multi-domain]  Cd Length: 975  Bit Score: 76.53  E-value: 3.88e-18
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 58476537   4 LEGLRVAIGPCRMLQYCLQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYPrIYNDDKNTYIRyELDYIL 74
Cdd:COG5181 907 MESFATVLGSGAMMKYVQQGLFHPSSTVRKRYWTVYNIMYVFDSDAMVPCYP-VEEDLNPELAR-TLHICI 975
 
Name Accession Description Interval E-value
HSH155 COG5181
U2 snRNP spliceosome subunit [RNA processing and modification];
4-74 3.88e-18

U2 snRNP spliceosome subunit [RNA processing and modification];


Pssm-ID: 227508 [Multi-domain]  Cd Length: 975  Bit Score: 76.53  E-value: 3.88e-18
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 58476537   4 LEGLRVAIGPCRMLQYCLQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYPrIYNDDKNTYIRyELDYIL 74
Cdd:COG5181 907 MESFATVLGSGAMMKYVQQGLFHPSSTVRKRYWTVYNIMYVFDSDAMVPCYP-VEEDLNPELAR-TLHICI 975
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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