|
Name |
Accession |
Description |
Interval |
E-value |
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
84-242 |
1.86e-27 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 110.87 E-value: 1.86e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 84 ADCLYNLGLCYMEEGNLQMAFDSFTKAVKANPDFAESFYQRGLCKVKLHK-DSSILDFNRAITLNPKHYQAYLSRVAFYG 162
Cdd:COG0457 8 AEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRyEEALADYEQALELDPDDAEALNNLGLALQ 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 163 LKGRYSKAILNCNKAIKIYPESVRAYLYRGVLKYYNKTYKLAITDLTTAISMDKNSYTAFYNRALCYTKIRELQMALTDY 242
Cdd:COG0457 88 ALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELL 167
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
111-283 |
7.78e-25 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 103.16 E-value: 7.78e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 111 VKANPDFAESFYQRGLCKVKLHK-DSSILDFNRAITLNPKHYQAYLSRVAFYGLKGRYSKAILNCNKAIKIYPESVRAYL 189
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRyEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 190 YRGVLKYYNKTYKLAITDLTTAISMDKNSYTAFYNRALCYTKIRELQMALTDYGIVLLLDATETVKLNtflNRGLIYVEL 269
Cdd:COG0457 81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALY---NLGIALEKL 157
|
170
....*....|....
gi 74353659 270 GQYGFALEDFKQAA 283
Cdd:COG0457 158 GRYEEALELLEKLE 171
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
257-421 |
1.38e-24 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 102.39 E-value: 1.38e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 257 NTFLNRGLIYVELGQYGFALEDFKQAALISRTNGSLCHATAMCHHRINEFEEAVNFFTWALKINPCFLDAYVGRGNSYME 336
Cdd:COG0457 9 EAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQA 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 337 YGHDEatkQAQKDFLKALHINPAYIKARISFGYNLQAQGKFQKAWNHFTIAIDTDPKNYLAYEGRAVVCLQMGNNFAAMQ 416
Cdd:COG0457 89 LGRYE---EALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALE 165
|
....*
gi 74353659 417 DINAA 421
Cdd:COG0457 166 LLEKL 170
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
178-421 |
5.11e-24 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 100.85 E-value: 5.11e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 178 IKIYPESVRAYLYRGVLKYYNKTYKLAITDLTTAISMDKNSYTAFYNRALCYTKIRELQMALTDYGIVLLLDATETVKLN 257
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 258 tflNRGLIYVELGQYGFALEDFKQAALISRTNGSLCHATAMCHHRINEFEEAVNFFTWALKINPCFLDAYVGRGNSYMEY 337
Cdd:COG0457 81 ---NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKL 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 338 G-HDEATKQAQKDFLKALHINPAYIKARISFGYNLQAQGKFQKAWNHFTIAIDTDPKNYLAYEGRAVVCLQMGNNFAAMQ 416
Cdd:COG0457 158 GrYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAA 237
|
....*
gi 74353659 417 DINAA 421
Cdd:COG0457 238 LALYQ 242
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
297-487 |
5.21e-23 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 98.16 E-value: 5.21e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 297 AMCHHRINEFEEAVNFFTWALKINPCFLDAYVGRGNSYMEYGHDEatkQAQKDFLKALHINPAYIKARISFGYNLQAQGK 376
Cdd:COG0457 15 GLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYE---EALADYEQALELDPDDAEALNNLGLALQALGR 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 377 FQKAWNHFTIAIDTDPKNYLAYEGRAVVCLQMGNNFAAMQDINAAMKIS-TTAEFLTNRGVIHEFMGHKQNAMKDYQDAI 455
Cdd:COG0457 92 YEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDpDDADALYNLGIALEKLGRYEEALELLEKLE 171
|
170 180 190
....*....|....*....|....*....|..
gi 74353659 456 TLNPKYSLAYFNAGNIYFHHRQFSQEESLGLA 487
Cdd:COG0457 172 AAALAALLAAALGEAALALAAAEVLLALLLAL 203
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
12-282 |
2.57e-22 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 96.72 E-value: 2.57e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 12 QQALIYSFCENHDKAIEVLDGISWNRAEMTMCAL-LAKVQMKAKRTKEAVEVLKKALdaishsdkgpDATAISADCLYNL 90
Cdd:COG2956 13 FKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLaLGNLYRRRGEYDRAIRIHQKLL----------ERDPDRAEALLEL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 91 GLCYMEEGNLQMAFDSFTKAVKANPDFAESFYQRGLCKVKLHK-DSSILDFNRAITLNPKHYQAYLSRVAFYGLKGRYSK 169
Cdd:COG2956 83 AQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDwEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDE 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 170 AILNCNKAIKIYPESVRAYLYRGVLKYYNKTYKLAITDLTTAISMDKNSYTAFYNRALCYTKIRELQMALTDYGIVLLLD 249
Cdd:COG2956 163 AIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELD 242
|
250 260 270
....*....|....*....|....*....|...
gi 74353659 250 ATETVKlntfLNRGLIYVELGQYGFALEDFKQA 282
Cdd:COG2956 243 PSDDLL----LALADLLERKEGLEAALALLERQ 271
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
46-284 |
3.80e-22 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 95.46 E-value: 3.80e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 46 LAKVQMKAKRTKEAVEVLKKALdaishsDKGPDataiSADCLYNLGLCYMEEGNLQMAFDSFTKAVKANPDFAESFYQRG 125
Cdd:COG0457 14 LGLAYRRLGRYEEAIEDYEKAL------ELDPD----DAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLG 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 126 LCKVKLHK-DSSILDFNRAITLNPKHYQAYLSRVAFYGLKGRYSKAILNCNKAIKIYPESVRAYLYRGVLKYYNKTYKLA 204
Cdd:COG0457 84 LALQALGRyEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEA 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 205 ITDLttaismDKNSYTAFYNRALCYTKIRELQMALTDYGIVLLLDATETVKLNTFLNRGLIYVELGQYGFALEDFKQAAL 284
Cdd:COG0457 164 LELL------EKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAA 237
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
44-227 |
1.37e-21 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 93.44 E-value: 1.37e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 44 ALLAKVQMKAKRTKEAVEVLKKALDAISHSDKGPDATAISADCLYNLGLCYMEEGNLQMAFDSFTKAVKANPDFAESFYQ 123
Cdd:COG4785 33 AVLALAIALADLALALAAAALAAAALAAERIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNN 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 124 RGLCKVKL-HKDSSILDFNRAITLNPKHYQAYLSR-VAFYGLkGRYSKAILNCNKAIKIYPESVRAYLYRGvLKYYNKTY 201
Cdd:COG4785 113 RGLAYLLLgDYDAALEDFDRALELDPDYAYAYLNRgIALYYL-GRYELAIADLEKALELDPNDPERALWLY-LAERKLDP 190
|
170 180 190
....*....|....*....|....*....|..
gi 74353659 202 KLAITDLTTAISM------DKNSYTAFYNRAL 227
Cdd:COG4785 191 EKALALLLEDWATayllqgDTEEARELFKLAL 222
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
45-320 |
5.05e-20 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 90.17 E-value: 5.05e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 45 LLAKVQMKAKRTKEAVEVLKKALDAISHSdkgpdataisADCLYNLGLCYMEEGNLQMAFDSFTKAVKANPDFAESFYQR 124
Cdd:COG2956 13 FKGLNYLLNGQPDKAIDLLEEALELDPET----------VEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLEL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 125 GLC--KVKLHkDSSILDFNRAITLNPKHYQAYLSRVAFYGLKGRYSKAILNCNKAIKIYPESVRAYLYRGVLKYYNKTYK 202
Cdd:COG2956 83 AQDylKAGLL-DRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYD 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 203 LAITDLTTAISMDKNSYTAFYNRALCYTKIRELQMALTDYGIVLLLDATetvKLNTFLNRGLIYVELGQYGFALEDFKQA 282
Cdd:COG2956 162 EAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPD---YLPALPRLAELYEKLGDPEEALELLRKA 238
|
250 260 270
....*....|....*....|....*....|....*...
gi 74353659 283 ALISRTNgSLCHATAMCHHRINEFEEAVNFFTWALKIN 320
Cdd:COG2956 239 LELDPSD-DLLLALADLLERKEGLEAALALLERQLRRH 275
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
259-472 |
4.26e-19 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 87.48 E-value: 4.26e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 259 FLNRGLIYVELGQYGFALEDFKQAALISRTNGSLCHATAMCHHRINEFEEAVNFFTWALKINPCFLDAYVGRGNSYMEYG 338
Cdd:COG2956 11 WYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAG 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 339 HDEatkQAQKDFLKALHINPAYIKARISFGYNLQAQGKFQKAWNHFTIAIDTDPKNYLAYEGRAVVCLQMGNNFAAMQDI 418
Cdd:COG2956 91 LLD---RAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEAL 167
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 74353659 419 NAAMKIS-TTAEFLTNRGVIHEFMGHKQNAMKDYQDAITLNPKYSLAYFNAGNIY 472
Cdd:COG2956 168 EKALKLDpDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELY 222
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
113-233 |
4.68e-19 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 86.12 E-value: 4.68e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 113 ANPDFAESFYQRGLCKVKLHK-DSSILDFNRAITLNPKHYQAYLSRVAFYGLKGRYSKAILNCNKAIKIYPESVRAYLYR 191
Cdd:COG4785 68 ALPDLAQLYYERGVAYDSLGDyDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNR 147
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 74353659 192 GVLKYYNKTYKLAITDLTTAISMDKNSYTAFYNRALCYTKIR 233
Cdd:COG4785 148 GIALYYLGRYELAIADLEKALELDPNDPERALWLYLAERKLD 189
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
88-357 |
7.45e-19 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 86.71 E-value: 7.45e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 88 YNLGLCYMEEGNLQMAFDSFTKAVKANPDFAESFYQRGLCKVKL-HKDSSILDFNRAITLNPKHYQAYLSRVAFYGLKGR 166
Cdd:COG2956 12 YFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRgEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 167 YSKAILNCNKAIKIYPESVRAYLYRGVLKYYNKTYKLAITDLTTAISMDKNSYTAFYNRALCYTKIRELQMALTDYGIVL 246
Cdd:COG2956 92 LDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKAL 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 247 LLDATetvKLNTFLNRGLIYVELGQYGFALEDFKQAALISRTNGSLCHATAMCHHRINEFEEAVNFFTWALKINPCfLDA 326
Cdd:COG2956 172 KLDPD---CARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPS-DDL 247
|
250 260 270
....*....|....*....|....*....|.
gi 74353659 327 YVGRGNSYMEYGHDEAtkqAQKDFLKALHIN 357
Cdd:COG2956 248 LLALADLLERKEGLEA---ALALLERQLRRH 275
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
14-227 |
1.19e-18 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 85.44 E-value: 1.19e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 14 ALIYSFCENHDKAIEVLD-GISWNRAEMTMCALLAKVQMKAKRTKEAVEVLKKALDAishsdkGPDataiSADCLYNLGL 92
Cdd:COG0457 15 GLAYRRLGRYEEAIEDYEkALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALEL------DPD----DAEALNNLGL 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 93 CYMEEGNLQMAFDSFTKAVKANPDFAESFYQRGLCKVKL-HKDSSILDFNRAITLNPKHYQAYLSRVAFYGLKGRYSKAI 171
Cdd:COG0457 85 ALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELgRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEAL 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 74353659 172 LNCNKAIKIYPESVRAYLYRGVLKYYNKTYKLAITDLTTAISMDKNSYTAFYNRAL 227
Cdd:COG0457 165 ELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALA 220
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
354-480 |
1.02e-16 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 79.67 E-value: 1.02e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 354 LHINPAYIKARISFGYNLQAQGKFQKAWNHFTIAIDTDPKNYLAYEGRAVVCLQMGNNFAAMQDINAAMKI-STTAEFLT 432
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELdPDDAEALN 80
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 74353659 433 NRGVIHEFMGHKQNAMKDYQDAITLNPKYSLAYFNAGNIYFHHRQFSQ 480
Cdd:COG0457 81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDE 128
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
160-455 |
3.55e-16 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 78.62 E-value: 3.55e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 160 FYGLKGRYSKAILNCNKAIKIYPESVRAYLYRGVLKYYNKTYKLAITDLTTAISMDKNSYTAFYnralcytkirELqmal 239
Cdd:COG2956 17 NYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALL----------EL---- 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 240 tdygivllldatetvklntflnrGLIYVELGQYGFALEDFKQAALISRTNGSLCHATAMCHHRINEFEEAVNFFTWALKI 319
Cdd:COG2956 83 -----------------------AQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKL 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 320 NPCFLDAYVGRGNSYMEYGHdeaTKQAQKDFLKALHINPAYIKARISFGYNLQAQGKFQKAWNHFTIAIDTDPKNYLAYE 399
Cdd:COG2956 140 GPENAHAYCELAELYLEQGD---YDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALP 216
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 74353659 400 GRAVVCLQMGNNFAAMQDINAAMKISTTAEFLTNRGVIHEFMGHKQNAMKDYQDAI 455
Cdd:COG2956 217 RLAELYEKLGDPEEALELLRKALELDPSDDLLLALADLLERKEGLEAALALLERQL 272
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
295-480 |
8.80e-16 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 77.46 E-value: 8.80e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 295 ATAMCHHRINEFEEAVNFFTWALKINPCFLDAYVGRGNSYMEYGHdeaTKQAQKDFLKALHINPAYIKARISFGYNLQAQ 374
Cdd:COG2956 13 FKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGE---YDRAIRIHQKLLERDPDRAEALLELAQDYLKA 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 375 GKFQKAWNHFTIAIDTDPKNYLAYEGRAVVCLQMGNNFAAMQDINAAMKIS-TTAEFLTNRGVIHEFMGHKQNAMKDYQD 453
Cdd:COG2956 90 GLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGpENAHAYCELAELYLEQGDYDEAIEALEK 169
|
170 180
....*....|....*....|....*..
gi 74353659 454 AITLNPKYSLAYFNAGNIYFHHRQFSQ 480
Cdd:COG2956 170 ALKLDPDCARALLLLAELYLEQGDYEE 196
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
189-389 |
2.84e-15 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 74.95 E-value: 2.84e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 189 LYRGVLKYYNKTYKLAITDLTTAISM-----DKNSYTAFYNRALCYTKIRELQMALTDYGIVLLLDATETVKLNTFLNRG 263
Cdd:COG4785 1 LYALALALLLALALAAAAASKAAILLaallfAAVLALAIALADLALALAAAALAAAALAAERIDRALALPDLAQLYYERG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 264 LIYVELGQYGFALEDFKQAAlisrtngSLCHATA-------MCHHRINEFEEAVNFFTWALKINPCFLDAYVGRGNSYME 336
Cdd:COG4785 81 VAYDSLGDYDLAIADFDQAL-------ELDPDLAeaynnrgLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYY 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 74353659 337 YGHDEAtkqAQKDFLKALHINP----------------AYIKARISF----GYNLQAQGKFQKAWNHFTIAID 389
Cdd:COG4785 154 LGRYEL---AIADLEKALELDPndperalwlylaerklDPEKALALLledwATAYLLQGDTEEARELFKLALA 223
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
22-191 |
6.17e-15 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 77.73 E-value: 6.17e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 22 NHDKAIEVLDGISWNRAEMTMCALLAKVQMKAKRTKEAVEVLKKALDAishsdkGPDataiSADCLYNLGLCYMEEGNLQ 101
Cdd:COG3914 60 LALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALAL------NPD----NAEALFNLGNLLLALGRLE 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 102 MAFDSFTKAVKANPDFAESFYQRGLCKVKLHK-DSSILDFNRAITLNPKHYQAYLSRVAFYGLKGRYSKAILNCNKAIKI 180
Cdd:COG3914 130 EALAALRRALALNPDFAEAYLNLGEALRRLGRlEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALEL 209
|
170
....*....|.
gi 74353659 181 YPESVRAYLYR 191
Cdd:COG3914 210 DPDNADAHSNL 220
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
321-501 |
1.88e-14 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 72.64 E-value: 1.88e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 321 PCFLDAYVGRGNSYMEYGHDEATKQAQKDFLKALH-INPAYIKARISFGYNLQA-----QGKFQKAWNHFTIAIDTDPKN 394
Cdd:COG4785 27 AALLFAAVLALAIALADLALALAAAALAAAALAAErIDRALALPDLAQLYYERGvaydsLGDYDLAIADFDQALELDPDL 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 395 YLAYEGRAVVCLQMGNNFAAMQDINAAMKISTT-AEFLTNRGVIHEFMGHKQNAMKDYQDAITLNPKYSLAYFNAGNIYF 473
Cdd:COG4785 107 AEAYNNRGLAYLLLGDYDAALEDFDRALELDPDyAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALWLYLAER 186
|
170 180
....*....|....*....|....*...
gi 74353659 474 HHRQFSQEESLGLAWSLSLDSFLRTGGA 501
Cdd:COG4785 187 KLDPEKALALLLEDWATAYLLQGDTEEA 214
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
94-261 |
2.78e-14 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 75.80 E-value: 2.78e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 94 YMEEGNLQMAFDSFTKAVKANPDFAESFYQRGLCKVKLHK-DSSILDFNRAITLNPKHYQAYLSRVAFYGLKGRYSKAIL 172
Cdd:COG3914 88 LQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRlEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIA 167
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 173 NCNKAIKIYPESVRAYLYRGVLKYYNKTYKLAITDLTTAISMDKNSYTAFYNRALCYTKIRELQMALTDYGIVLLLDATE 252
Cdd:COG3914 168 ALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRFEELLAALARGP 247
|
....*....
gi 74353659 253 TVKLNTFLN 261
Cdd:COG3914 248 SELSPFALL 256
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
295-425 |
1.32e-13 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 67.91 E-value: 1.32e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 295 ATAMCHHRINEFEEAVNFFTWALKINPCFLDAYVGRGNSYMEYGHDEatkQAQKDFLKALHINPAYIKARISFGYNLQAQ 374
Cdd:COG4783 9 ALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLD---EAIVLLHEALELDPDEPEARLNLGLALLKA 85
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 74353659 375 GKFQKAWNHFTIAIDTDPKNYLAYEGRAVVCLQMGNNFAAMQDINAAMKIS 425
Cdd:COG4783 86 GDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELD 136
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
281-490 |
2.37e-13 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 72.72 E-value: 2.37e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 281 QAALISRTNGSLCHATAMCHHRINEFEEAVNFFTWALKINPCFLDAYVGRGNSYMEYGHDEAtkQAQKDFLKALHINPAY 360
Cdd:COG3914 5 ALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGE--AAAAAAALLLLAALLE 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 361 IKARIsfgynLQAQGKFQKAWNHFTIAIDTDPKNYLAYEGRAVVCLQMGNNFAAMQDINAAMKIS-TTAEFLTNRGVIHE 439
Cdd:COG3914 83 LAALL-----LQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNpDFAEAYLNLGEALR 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 74353659 440 FMGHKQNAMKDYQDAITLNPKYSLAYFNAGNIYFHHRQFSQ-EESLGLAWSL 490
Cdd:COG3914 158 RLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEaIAAYRRALEL 209
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
46-184 |
2.47e-13 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 67.14 E-value: 2.47e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 46 LAKVQMKAKRTKEAVEVLKKALDAishSDKGPDAtaisadcLYNLGLCYMEEGNLQMAFDSFTKAVKANPDFAESFYQRG 125
Cdd:COG4783 10 LAQALLLAGDYDEAEALLEKALEL---DPDNPEA-------FALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLG 79
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 126 LCKVKLHK-DSSILDFNRAITLNPKHYQAYLSRVAFYGLKGRYSKAILNCNKAIKIYPES 184
Cdd:COG4783 80 LALLKAGDyDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
262-398 |
5.19e-13 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 71.56 E-value: 5.19e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 262 RGLIYVELGQYGFALEDFKQAALISRTNGSLCHATAMCHHRINEFEEAVNFFTWALKINPCFLDAYVGRGNSYMEYG-HD 340
Cdd:COG3914 84 AALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGrLE 163
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 74353659 341 EATKQAQkdflKALHINPAYIKARISFGYNLQAQGKFQKAWNHFTIAIDTDPKNYLAY 398
Cdd:COG3914 164 EAIAALR----RALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAH 217
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
45-471 |
6.53e-13 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 71.65 E-value: 6.53e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 45 LLAKVQMKAKRTKEAVEVLKKAldaisHSDKGPDATAIsadcLYNLGLCYMEEGNLQMAFDSFTKAVKANPDFAESfyQR 124
Cdd:TIGR02917 95 LLARAYLLQGKFQQVLDELPGK-----TLLDDEGAAEL----LALRGLAYLGLGQLELAQKSYEQALAIDPRSLYA--KL 163
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 125 GLCKVKLHK---DSSILDFNRAITLNPKHYQAYLSRVAFYGLKGRYSKAILNCNKAIKIYPESVRAYLYRGVLKYYNKTY 201
Cdd:TIGR02917 164 GLAQLALAEnrfDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEF 243
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 202 KLAITDLTTAISMDKNSYTAFYNRALCYTKIRELQMALTdygivlllDATETVKLNT-FLNR----GLIYVELGQYGFAL 276
Cdd:TIGR02917 244 EEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARE--------TLQDALKSAPeYLPAlllaGASEYQLGNLEQAY 315
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 277 EDFKQAALISRTNGSLCHATAMCHHRINEFEEAVNFFTWALKINPCFLDAYVGRGNSYMEYGhdeATKQAQKDFLKALHI 356
Cdd:TIGR02917 316 QYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALG---DFEKAAEYLAKATEL 392
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 357 NPAYIKARISFGYNLQAQGKFQKAWNHFTIAIDTDPKNylayeGRAVVCLQmgnnFAAMQ--DINAAMKISttAEFLTN- 433
Cdd:TIGR02917 393 DPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPEL-----GRADLLLI----LSYLRsgQFDKALAAA--KKLEKKq 461
|
410 420 430 440
....*....|....*....|....*....|....*....|....*..
gi 74353659 434 ---------RGVIHEFMGHKQNAMKDYQDAITLNPKYSLAYFNAGNI 471
Cdd:TIGR02917 462 pdnaslhnlLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARI 508
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
118-252 |
1.22e-12 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 65.21 E-value: 1.22e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 118 AESFYQRGLCKVKLHK-DSSILDFNRAITLNPKHYQAYLSRVAFYGLKGRYSKAILNCNKAIKIYPESVRAYLYRGVLKY 196
Cdd:COG4783 4 AEALYALAQALLLAGDyDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 74353659 197 YNKTYKLAITDLTTAISMDKNSYTAFYNRALCYTKIRELQMALTDYGIVLLLDATE 252
Cdd:COG4783 84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
189-483 |
1.57e-12 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 70.50 E-value: 1.57e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 189 LYRGVLKYYNK-TYKLAITDLTTAISMDKNSYTAFYNRALCYTKIRELQMALTDYGIVLLLDAtETVKLNTFLNRglIYV 267
Cdd:TIGR02917 25 LIEAAKSYLQKnKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGY-PKNQVLPLLAR--AYL 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 268 ELGQYGFALEDFKQAALISRTNGSLCHAT-AMCHHRINEFEEAVNFFTWALKINPCFLDAYVGRGNSYMEYGHDEatkQA 346
Cdd:TIGR02917 102 LQGKFQQVLDELPGKTLLDDEGAAELLALrGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFD---EA 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 347 QKDFLKALHINPAYIKARISFGYNLQAQGKFQKAWNHFTIAIDTDPKNYLAYEGRAVVCLQMGNNFAAMQDINAAMKI-- 424
Cdd:TIGR02917 179 RALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKap 258
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 425 -STTAEFLtnRGVIHEFMGHKQNAMKDYQDAITLNPKYSLAYFNAGNIYFHHRQFSQEES 483
Cdd:TIGR02917 259 nSPLAHYL--KALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQ 316
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
109-318 |
2.29e-12 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 66.48 E-value: 2.29e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 109 KAVKANPDFAESFYQRGLCKVKLHKDSSILDFNRAITLNPKHYQAYLSRVAFYGLKGRYSKAILNCNKAIKIYPESVRAY 188
Cdd:COG4785 31 FAAVLALAIALADLALALAAAALAAAALAAERIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAY 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 189 LYRGVLKYYNKTYKLAITDLTTAISMDKNSYTAFYNRALCYTKIRELQMALTDYGIVLLLDateTVKLNTFLNRGLIYVE 268
Cdd:COG4785 111 NNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELD---PNDPERALWLYLAERK 187
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 74353659 269 LGQYGfALEDFKQaalisrtngslchATAMCHHRINEFEEAVNFFTWALK 318
Cdd:COG4785 188 LDPEK-ALALLLE-------------DWATAYLLQGDTEEARELFKLALA 223
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
255-394 |
4.36e-12 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 63.67 E-value: 4.36e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 255 KLNTFLNRGLIYVELGQYGFALEDFKQAALISRTNGSLCHATAMCHHRINEFEEAVNFFTWALKINPCFLDAYVGRGNSY 334
Cdd:COG4783 3 CAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLAL 82
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 335 MEYGHdeaTKQAQKDFLKALHINPAYIKARISFGYNLQAQGKFQKAWNHFTIAIDTDPKN 394
Cdd:COG4783 83 LKAGD---YDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
93-186 |
4.74e-12 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 62.11 E-value: 4.74e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 93 CYMEEGNLQMAFDSFTKAVKANPDFAESFYQRGLCKVKLHKDSSILDFNRAITLNPKHYQAYLSRVAFYGLKGRYSKAIL 172
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIALEKALKLDPNNAEALLNLAELLLELGDYDEALA 80
|
90
....*....|....
gi 74353659 173 NCNKAIKIYPESVR 186
Cdd:COG3063 81 YLERALELDPSALR 94
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
196-484 |
5.78e-12 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 68.09 E-value: 5.78e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 196 YYNKTYKLAITDLTTAISMDKNSytAFY-NRALCYTKIRELQMALTDYGIVLLLDATETVKLNtflNRGLIYVELGQYGF 274
Cdd:TIGR00990 138 YRNKDFNKAIKLYSKAIECKPDP--VYYsNRAACHNALGDWEKVVEDTTAALELDPDYSKALN---RRANAYDGLGKYAD 212
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 275 ALEDFKQAALISRTNGSlcHATAMCHHRINEFEEA------------------VNFFTWALKINPCF--------LDAYV 328
Cdd:TIGR00990 213 ALLDLTASCIIDGFRNE--QSAQAVERLLKKFAESkakeiletkpenlpsvtfVGNYLQSFRPKPRPagledsneLDEET 290
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 329 GRGNS-----YMEYGHDEATKQAQKDFLKALHINPayIKARISFGYNLQA-----QGKFQKAWNHFTIAIDTDPKNYLAY 398
Cdd:TIGR00990 291 GNGQLqlglkSPESKADESYEEAARAFEKALDLGK--LGEKEAIALNLRGtfkclKGKHLEALADLSKSIELDPRVTQSY 368
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 399 EGRAVVCLQMGNNFAAMQDINAAMKI-STTAEFLTNRGVIHEFMGHKQNAMKDYQDAITLNPKYSLAYFNAGNIYFHHRQ 477
Cdd:TIGR00990 369 IKRASMNLELGDPDKAEEDFDKALKLnSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGS 448
|
....*..
gi 74353659 478 FSQEESL 484
Cdd:TIGR00990 449 IASSMAT 455
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
14-471 |
5.95e-12 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 68.57 E-value: 5.95e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 14 ALIYSFCENH--DKAIEVLDgiSWnRAEMTMCA----LLAKVQMKAKRTKEAVEVLKKALdaISHSDkgpDATAISadcl 87
Cdd:TIGR02917 436 LLILSYLRSGqfDKALAAAK--KL-EKKQPDNAslhnLLGAIYLGKGDLAKAREAFEKAL--SIEPD---FFPAAA---- 503
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 88 yNLGLCYMEEGNLQMAFDSFTKAVKANPDFAESFyqRGLCKVKL---HKDSSILDFNRAITLNPKHYQAYLSRVAFYGLK 164
Cdd:TIGR02917 504 -NLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAI--LALAGLYLrtgNEEEAVAWLEKAAELNPQEIEPALALAQYYLGK 580
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 165 GRYSKAILNCNKAIKIYPESVRAYLYRGVLKYYNKTYKLAITDLTTAISMDKNSYTAFYNRALCYTKIRELQMALTDYGI 244
Cdd:TIGR02917 581 GQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKR 660
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 245 VLLLDATETVKLntfLNRGLIYVELGQYGFALEDFKQ-------AALISRTNGSLchatamcHHRINEFEEAVNFFTWAL 317
Cdd:TIGR02917 661 ALELKPDNTEAQ---IGLAQLLLAAKRTESAKKIAKSlqkqhpkAALGFELEGDL-------YLRQKDYPAAIQAYRKAL 730
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 318 KINPcfLDAYVGRGNSYmeYGHDEATKQAQKDFLKALHINPAYIKARISFGYNLQAQGKFQKAWNHFTIAIDTDPKN--- 394
Cdd:TIGR02917 731 KRAP--SSQNAIKLHRA--LLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNavv 806
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 395 -----YLAYEGRAVVCLQMGNNFAAMQDINAAMkISTTAEFLTNRGVIHEFMGHKQNAMKDYQDAITLNPKYSLAYFNAG 469
Cdd:TIGR02917 807 lnnlaWLYLELKDPRALEYAERALKLAPNIPAI-LDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATG 885
|
..
gi 74353659 470 NI 471
Cdd:TIGR02917 886 RK 887
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
58-195 |
2.03e-11 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 61.56 E-value: 2.03e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 58 EAVEVLKKALDAIshsdkgPDataiSADCLYNLGLCYMEEGNLQMAFDSFTKAVKANPDFAESFYQRGLCKVKLHK-DSS 136
Cdd:COG4235 1 EAIARLRQALAAN------PN----DAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDtEEA 70
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 74353659 137 ILDFNRAITLNPKHYQAYLSRVAFYGLKGRYSKAILNCNKAIKIYPESVRAYLYRGVLK 195
Cdd:COG4235 71 EELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEASIA 129
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
363-478 |
5.17e-11 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 60.59 E-value: 5.17e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 363 ARISFGYNLQAQGKFQKAWNHFTIAIDTDPKNYLAYEGRAVVCLQMGNNFAAMQDINAAMKIS-TTAEFLTNRGVIHEFM 441
Cdd:COG4783 6 ALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDpDEPEARLNLGLALLKA 85
|
90 100 110
....*....|....*....|....*....|....*..
gi 74353659 442 GHKQNAMKDYQDAITLNPKYSLAYFNAGNIYFHHRQF 478
Cdd:COG4783 86 GDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRP 122
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
275-394 |
5.49e-11 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 60.40 E-value: 5.49e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 275 ALEDFKQAALISRTNGSLCHATAMCHHRINEFEEAVNFFTWALKINPCFLDAYVGRGNSYMEYGHDEatkQAQKDFLKAL 354
Cdd:COG4235 2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTE---EAEELLERAL 78
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 74353659 355 HINPAYIKARISFGYNLQAQGKFQKAWNHFTIAIDTDPKN 394
Cdd:COG4235 79 ALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPAD 118
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
234-380 |
8.68e-11 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 64.63 E-value: 8.68e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 234 ELQMALTDYGIVLLLDATETVKLNtflNRGLIYVELGQYGFALEDFKQAALISRTNGSLCHATAMCHHRINEFEEAVNFF 313
Cdd:COG3914 93 RYEEALALYRRALALNPDNAEALF---NLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAAL 169
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 74353659 314 TWALKINPCFLDAYVGRGNSYMEYGHDEatkQAQKDFLKALHINPAYIKARISFGYNLQAQGKFQKA 380
Cdd:COG3914 170 RRALELDPDNAEALNNLGNALQDLGRLE---EAIAAYRRALELDPDNADAHSNLLFALRQACDWEVY 233
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
11-150 |
2.72e-10 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 58.66 E-value: 2.72e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 11 MQQALIYSFCENHDKAIEVLD-GISWNRAEMTMCALLAKVQMKAKRTKEAVEVLKKALdaishsDKGPDATAIsadcLYN 89
Cdd:COG4783 8 YALAQALLLAGDYDEAEALLEkALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEAL------ELDPDEPEA----RLN 77
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 74353659 90 LGLCYMEEGNLQMAFDSFTKAVKANPDFAESFYQRGLCKVKL-HKDSSILDFNRAITLNPKH 150
Cdd:COG4783 78 LGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALgRPDEAIAALEKALELDPDD 139
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
165-320 |
1.04e-09 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 61.16 E-value: 1.04e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 165 GRYSKAILNCNKAIKIYPESVRAYLYRGVLKYYNKTYKLAITDLTTAISMDKNSYTAFYNRALCYTKIRELQMALTDYGI 244
Cdd:COG3914 92 GRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRR 171
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 74353659 245 VLLLDATEtvkLNTFLNRGLIYVELGQYGFALEDFKQAALISRTNGSLCHATAMCHHRINEFEEAVNFFTWALKIN 320
Cdd:COG3914 172 ALELDPDN---AEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRFEELLAALA 244
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
103-215 |
1.32e-09 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 56.17 E-value: 1.32e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 103 AFDSFTKAVKANPDFAESFYQRGLCKVKLHK-DSSILDFNRAITLNPKHYQAYLSRVAFYGLKGRYSKAILNCNKAIKIY 181
Cdd:COG4235 2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRyDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALD 81
|
90 100 110
....*....|....*....|....*....|....
gi 74353659 182 PESVRAYLYRGVLKYYNKTYKLAITDLTTAISMD 215
Cdd:COG4235 82 PDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALL 115
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
320-427 |
2.22e-09 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 57.62 E-value: 2.22e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 320 NPCFLDAYVGRGNSYMEYG-HDEAtkqaQKDFLKALHINPAYIKARISFGYNLQAQGKFQKAWNHFTIAIDTDPKNYLAY 398
Cdd:COG4785 69 LPDLAQLYYERGVAYDSLGdYDLA----IADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAY 144
|
90 100
....*....|....*....|....*....
gi 74353659 399 EGRAVVCLQMGNNFAAMQDINAAMKISTT 427
Cdd:COG4785 145 LNRGIALYYLGRYELAIADLEKALELDPN 173
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
299-395 |
2.73e-09 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 54.41 E-value: 2.73e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 299 CHHRINEFEEAVNFFTWALKINPCFLDAYVGRGNSYMEYG-HDEAtkqaqKDFLKALHINPAYIKARISFGYNLQAQGKF 377
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGrYDEA-----IALEKALKLDPNNAEALLNLAELLLELGDY 75
|
90
....*....|....*...
gi 74353659 378 QKAWNHFTIAIDTDPKNY 395
Cdd:COG3063 76 DEALAYLERALELDPSAL 93
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
345-465 |
2.73e-09 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 55.40 E-value: 2.73e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 345 QAQKDFLKALHINPAYIKARISFGYNLQAQGKFQKAWNHFTIAIDTDPKNYLAYEGRAVVCLQMGNNFAAMQDINAAMKI 424
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 74353659 425 -STTAEFLTNRGVIHEFMGHKQNAMKDYQDAITLNPKYSLAY 465
Cdd:COG4235 81 dPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPAR 122
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
83-465 |
3.03e-09 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 59.71 E-value: 3.03e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 83 SADCLYNLGLCYMEEGNLQMAFDSFTKAVKANPDFAESFYQRGLCKVKLHKDSS-ILDFNRAITLNPKHYQAYLSRVAFY 161
Cdd:TIGR02917 21 SPEELIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAaEKELRKALSLGYPKNQVLPLLARAY 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 162 GLKGRYSKAI-LNCNKAIKIYPESVRAYLYRGVLKYYNKTYKLAITDLTTAISMD-KNSYTAFynrALCYTKI--RELQM 237
Cdd:TIGR02917 101 LLQGKFQQVLdELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDpRSLYAKL---GLAQLALaeNRFDE 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 238 ALTDYGIVLLLDATETVKLNtfLNRGLIYVeLGQYGFALEDFKQAALISRTNGSLCHATAMCHHRINEFEEAVNFFTWAL 317
Cdd:TIGR02917 178 ARALIDEVLTADPGNVDALL--LKGDLLLS-LGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALL 254
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 318 KINP-----CFLDAYVgrgnSYMEYGHDEATKQAQkdflKALHINPAYIKARISFGYNLQAQGKFQKAWNHFTIAIDTDP 392
Cdd:TIGR02917 255 KKAPnsplaHYLKALV----DFQKKNYEDARETLQ----DALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAP 326
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 74353659 393 KNYLAYEGRAVVCLQMGNNFAAMQDINAAMKISTT-AEFLTNRGVIHEFMGHKQNAMKDYQDAITLNPKYSLAY 465
Cdd:TIGR02917 327 NSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDdPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAAR 400
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
337-428 |
5.61e-09 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 53.25 E-value: 5.61e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 337 YGHDEATKQAQKDFLKALHINPAYIKARISFGYNLQAQGKFQKAWNhFTIAIDTDPKNYLAYEGRAVVCLQMGNNFAAMQ 416
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALA 80
|
90
....*....|..
gi 74353659 417 DINAAMKISTTA 428
Cdd:COG3063 81 YLERALELDPSA 92
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
337-474 |
1.46e-08 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 55.31 E-value: 1.46e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 337 YGHDEATKQAQKDFLKALHINPAYIKARISFGYNLQAQGKFQKAwnhfTIAIDTD---PKNYLAYEGRAVVCLQMGNNFA 413
Cdd:COG4785 16 AAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALA----AERIDRAlalPDLAQLYYERGVAYDSLGDYDL 91
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 74353659 414 AMQDINAAMKIS-TTAEFLTNRGVIHEFMGHKQNAMKDYQDAITLNPKYSLAYFNAGNIYFH 474
Cdd:COG4785 92 AIADFDQALELDpDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYY 153
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
141-249 |
1.73e-08 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 53.81 E-value: 1.73e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 141 NRAITLNPKHYQAYLSRVAFYGLKGRYSKAILNCNKAIKIYPESVRAYLYRGVLKYYNKTYKLAITDLTTAISMDKNSYT 220
Cdd:COG5010 44 AAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPN 123
|
90 100
....*....|....*....|....*....
gi 74353659 221 AFYNRALCYTKIRELQMALTDYGIVLLLD 249
Cdd:COG5010 124 AYSNLAALLLSLGQDDEAKAALQRALGTS 152
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
137-246 |
1.89e-08 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 53.09 E-value: 1.89e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 137 ILDFNRAITLNPKHYQAYLSRVAFYGLKGRYSKAILNCNKAIKIYPESVRAYLYRGVLKYYNKTYKLAITDLTTAISMDK 216
Cdd:COG4235 3 IARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDP 82
|
90 100 110
....*....|....*....|....*....|
gi 74353659 217 NSYTAFYNRALCYTKIRELQMALTDYGIVL 246
Cdd:COG4235 83 DNPEALYLLGLAAFQQGDYAEAIAAWQKLL 112
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
316-459 |
2.35e-08 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 53.43 E-value: 2.35e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 316 ALKINPCFLDAYVGRGNSYMEYGHDEATKQAQKDFLKALHINPAYIKARISFGYNLQAQGKFQKAWNHFTIAIDTDPKNY 395
Cdd:COG5010 9 RLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNP 88
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 74353659 396 LAYEGRAVVCLQMGNNFAAMQDINAAMKIS-TTAEFLTNRGVIHEFMGHKQNAMKDYQDAITLNP 459
Cdd:COG5010 89 ELYYNLALLYSRSGDKDEAKEYYEKALALSpDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
139-219 |
2.47e-08 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 51.71 E-value: 2.47e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 139 DFNRAITLNPKHYQAYLSRVAFYGLKGRYSKAIlNCNKAIKIYPESVRAYLYRGVLKYYNKTYKLAITDLTTAISMDKNS 218
Cdd:COG3063 14 YYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEALAYLERALELDPSA 92
|
.
gi 74353659 219 Y 219
Cdd:COG3063 93 L 93
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
45-479 |
2.57e-08 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 56.63 E-value: 2.57e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 45 LLAKVQMKAKRTKEAVEVLKKALDaishsdKGPDATAIsadcLYNLGLCYMEEGNLQMAFDSFTKAVKANPDFAESFYQR 124
Cdd:TIGR02917 334 LLASIQLRLGRVDEAIATLSPALG------LDPDDPAA----LSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQL 403
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 125 GLCKVKLHKDSS-ILDFNRAITLNPKHYQAYLSrVAFYGLK-GRYSKAILNCNKAIKIYPESVRAYLYRGVLKYYNKTYK 202
Cdd:TIGR02917 404 GISKLSQGDPSEaIADLETAAQLDPELGRADLL-LILSYLRsGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLA 482
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 203 LAITDLTTAISMDKNSYTAFYNRA-LCYTK------IRELQMALTDY-----------GIVLLLDATETVK--------- 255
Cdd:TIGR02917 483 KAREAFEKALSIEPDFFPAAANLArIDIQEgnpddaIQRFEKVLTIDpknlrailalaGLYLRTGNEEEAVawlekaael 562
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 256 ----LNTFLNRGLIYVELGQYGFALEDFKQAALISRTNGSLCHATAMCHHRINEFEEAVNFFTWALKINPCFLDAYVGRG 331
Cdd:TIGR02917 563 npqeIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLA 642
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 332 NSYMEYghdEATKQAQKDFLKALHINPAYIKARISFGYNLQAQGKFQKAWNHFTIAIDTDPKNYLAYEGRAVVCLQMGNN 411
Cdd:TIGR02917 643 DAYAVM---KNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDY 719
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 74353659 412 FAAMQDINAAMKISTTAEFLTNRGVIHEFMGHKQNAMKDYQDAITLNPKYSLAYFNAGNIYFHHRQFS 479
Cdd:TIGR02917 720 PAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYD 787
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
316-425 |
2.95e-08 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 52.32 E-value: 2.95e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 316 ALKINPCFLDAYVGRGNSYMEYGHdeaTKQAQKDFLKALHINPAYIKARISFGYNLQAQGKFQKAWNHFTIAIDTDPKNY 395
Cdd:COG4235 9 ALAANPNDAEGWLLLGRAYLRLGR---YDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNP 85
|
90 100 110
....*....|....*....|....*....|
gi 74353659 396 LAYEGRAVVCLQMGNNFAAMQDINAAMKIS 425
Cdd:COG4235 86 EALYLLGLAAFQQGDYAEAIAAWQKLLALL 115
|
|
| type_IV_pilW |
TIGR02521 |
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ... |
325-488 |
5.05e-08 |
|
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Pssm-ID: 131573 [Multi-domain] Cd Length: 234 Bit Score: 53.88 E-value: 5.05e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 325 DAYVGRGNSYMEYGHdeaTKQAQKDFLKALHINPAYIKARISFGYNLQAQGKFQKAWNHFTIAIDTDPKNYLAYEGRAVV 404
Cdd:TIGR02521 32 KIRVQLALGYLEQGD---LEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTF 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 405 CLQMGNNFAAMQDINAAMK---ISTTAEFLTNRGVIHEFMGHKQNAMKDYQDAITLNPKYSLA-------YFNAGNI--- 471
Cdd:TIGR02521 109 LCQQGKYEQAMQQFEQAIEdplYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESllelaelYYLRGQYkda 188
|
170 180
....*....|....*....|..
gi 74353659 472 -----YFHHRQFSQEESLGLAW 488
Cdd:TIGR02521 189 rayleRYQQTYNQTAESLWLGI 210
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
265-359 |
1.03e-07 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 49.78 E-value: 1.03e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 265 IYVELGQYGFALEDFKQAALISRTNGSLCHATAMCHHRINEFEEAVNfFTWALKINPCFLDAYVGRGNSYMEYGHdeaTK 344
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGD---YD 76
|
90
....*....|....*
gi 74353659 345 QAQKDFLKALHINPA 359
Cdd:COG3063 77 EALAYLERALELDPS 91
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
371-460 |
1.59e-07 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 49.40 E-value: 1.59e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 371 LQAQGKFQKAWNHFTIAIDTDPKNYLAYEGRAVVCLQMGNNFAAMQdINAAMKI-STTAEFLTNRGVIHEFMGHKQNAMK 449
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLdPNNAEALLNLAELLLELGDYDEALA 80
|
90
....*....|.
gi 74353659 450 DYQDAITLNPK 460
Cdd:COG3063 81 YLERALELDPS 91
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
161-250 |
2.83e-07 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 48.63 E-value: 2.83e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 161 YGLKGRYSKAILNCNKAIKIYPESVRAYLYRGVLKYYNKTYKLAItDLTTAISMDKNSYTAFYNRALCYTKIRELQMALT 240
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEALA 80
|
90
....*....|
gi 74353659 241 DYGIVLLLDA 250
Cdd:COG3063 81 YLERALELDP 90
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
58-196 |
3.51e-07 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 53.06 E-value: 3.51e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 58 EAVEVLKKALDAishSDKGPdATAISadclYNL-GLCYMEEGNLQMAFDSFTKAVKANPDFAESFYQRGLCKVKL-HKDS 135
Cdd:TIGR00990 312 EAARAFEKALDL---GKLGE-KEAIA----LNLrGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELgDPDK 383
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 74353659 136 SILDFNRAITLNPKHYQAYLSRVAFYGLKGRYSKAILNCNKAIKIYPESVRAYLYRGVLKY 196
Cdd:TIGR00990 384 AEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQY 444
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
44-155 |
6.47e-07 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 48.46 E-value: 6.47e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 44 ALLAKVQMKAKRTKEAVEVLKKALDAishsdKGPDATAisadcLYNLGLCYMEEGNLQMAFDSFTKAVKANPDFAESFYQ 123
Cdd:COG4235 21 LLLGRAYLRLGRYDEALAAYEKALRL-----DPDNADA-----LLDLAEALLAAGDTEEAEELLERALALDPDNPEALYL 90
|
90 100 110
....*....|....*....|....*....|...
gi 74353659 124 RGLCKVKLHK-DSSILDFNRAITLNPKHYQAYL 155
Cdd:COG4235 91 LGLAAFQQGDyAEAIAAWQKLLALLPADAPARL 123
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
357-478 |
6.74e-07 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 50.30 E-value: 6.74e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 357 NPAYIKARISFGYNLQAQGKFQKAWNHFTIAIDTDPKNYLAYEGRAVVCLQMGNNFAAMQDINAAMKISTTAEFLTNRGV 436
Cdd:COG4785 2 YALALALLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRALALPDLAQLYYERGV 81
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 74353659 437 IHEFMGHKQNAMKDYQDAITLNPKYSLAYFNAGNIYFHHRQF 478
Cdd:COG4785 82 AYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDY 123
|
|
| type_IV_pilW |
TIGR02521 |
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ... |
89-239 |
9.02e-07 |
|
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Pssm-ID: 131573 [Multi-domain] Cd Length: 234 Bit Score: 50.03 E-value: 9.02e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 89 NLGLCYMEEGNLQMAFDSFTKAVKANPDFAESFYQRGLCKVKLHKDSSILD-FNRAITLNPKHYQAYLSRVAFYGLKGRY 167
Cdd:TIGR02521 36 QLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDsFRRALTLNPNNGDVLNNYGTFLCQQGKY 115
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 74353659 168 SKAILNCNKAIK--IYPESVRAYLYRGVLKYYNKTYKLAITDLTTAISMDKNSYTAFYNRALCYTKIRELQMAL 239
Cdd:TIGR02521 116 EQAMQQFEQAIEdpLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDAR 189
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
51-157 |
1.50e-06 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 46.91 E-value: 1.50e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 51 MKAKRTKEAVEVLKKALDAISHSDKGPDAtaisadcLYNLGLCYMEEGNLQMAFDSFTKAVKANPD---FAESFYQRGLC 127
Cdd:COG1729 4 LKAGDYDEAIAAFKAFLKRYPNSPLAPDA-------LYWLGEAYYALGDYDEAAEAFEKLLKRYPDspkAPDALLKLGLS 76
|
90 100 110
....*....|....*....|....*....|.
gi 74353659 128 KVKL-HKDSSILDFNRAITLNPKHYQAYLSR 157
Cdd:COG1729 77 YLELgDYDKARATLEELIKKYPDSEAAKEAR 107
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
134-216 |
2.17e-06 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 47.65 E-value: 2.17e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 134 DSSILDFNRAITLNPKHYQAYLSRVAFYGLKGRYSKAILNCNKAIKIYPESVRAYLYRGVLKYYNKTYKLAITDLTTAIS 213
Cdd:COG5010 71 EESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALG 150
|
...
gi 74353659 214 MDK 216
Cdd:COG5010 151 TSP 153
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
264-358 |
3.43e-06 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 47.26 E-value: 3.43e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 264 LIYVELGQYGFALEDFKQAALISRTNGSLCHATAMCHHRINEFEEAVNFFTWALKINPCFLDAYVGRGNSYMEYGHDEat 343
Cdd:COG5010 62 NLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDD-- 139
|
90
....*....|....*
gi 74353659 344 kQAQKDFLKALHINP 358
Cdd:COG5010 140 -EAKAALQRALGTSP 153
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
342-484 |
5.36e-06 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 46.49 E-value: 5.36e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 342 ATKQAQKDFLKALHINPAYIKARISFGYNLQAQGKFQKAWNHFTIAIDTDPKNYLAYEGRAVVCLQMGNNFAAMQDINAA 421
Cdd:COG5010 1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 74353659 422 MKIS-TTAEFLTNRGVIHEFMGHKQNAMKDYQDAITLNPKYSLAYFNAGNIYFHHRQFSQEESL 484
Cdd:COG5010 81 LQLDpNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAA 144
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
44-148 |
1.15e-05 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 45.72 E-value: 1.15e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 44 ALLAKVQMKAKRTKEAVEVLKKALDAishsdkGPDataiSADCLYNLGLCYMEEGNLQMAFDSFTKAVKANPDFAESFYQ 123
Cdd:COG5010 58 SPSDNLYNKLGDFEESLALLEQALQL------DPN----NPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSN 127
|
90 100
....*....|....*....|....*.
gi 74353659 124 RGLCKVKL-HKDSSILDFNRAITLNP 148
Cdd:COG5010 128 LAALLLSLgQDDEAKAALQRALGTSP 153
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
142-282 |
1.26e-05 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 45.34 E-value: 1.26e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 142 RAITLNPKHYQAYLSRVAFYGLKGRYSKAILNCNKAIKIYPESVRAYLYRGVLKYYNKTYKLAITDLTTAISMDKNSYTA 221
Cdd:COG5010 11 PLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPEL 90
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 74353659 222 FYNRALCYTKIRELQMALTDYGIVLLLDATETvklNTFLNRGLIYVELGQYGFALEDFKQA 282
Cdd:COG5010 91 YYNLALLYSRSGDKDEAKEYYEKALALSPDNP---NAYSNLAALLLSLGQDDEAKAALQRA 148
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
84-117 |
2.56e-05 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 41.28 E-value: 2.56e-05
10 20 30
....*....|....*....|....*....|....
gi 74353659 84 ADCLYNLGLCYMEEGNLQMAFDSFTKAVKANPDF 117
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
84-117 |
2.79e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 41.25 E-value: 2.79e-05
10 20 30
....*....|....*....|....*....|....
gi 74353659 84 ADCLYNLGLCYMEEGNLQMAFDSFTKAVKANPDF 117
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
397-484 |
6.27e-05 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 42.87 E-value: 6.27e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 397 AYEGRAVVCLQMGNNFAAMQDINAAMKISTT-AEFLTNRGVIHEFMGHKQNAMKDYQDAITLNPKYSLAYFNAGNIYFHH 475
Cdd:COG4783 6 ALYALAQALLLAGDYDEAEALLEKALELDPDnPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKA 85
|
....*....
gi 74353659 476 RQFSQEESL 484
Cdd:COG4783 86 GDYDEALAL 94
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
103-439 |
1.20e-04 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 44.97 E-value: 1.20e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 103 AFDSFTKAVKANPDfaESFY-QRGLCKVKLHK-DSSILDFNRAITLNPKHYQAYLSRVAFYGLKGRYSKAILNC------ 174
Cdd:TIGR00990 146 AIKLYSKAIECKPD--PVYYsNRAACHNALGDwEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLtascii 223
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 175 ---------------------NKAIKIY-------PESVRAYLYRGVLKYynktyKLAITDLTTAISMDK---NSYTAFY 223
Cdd:TIGR00990 224 dgfrneqsaqaverllkkfaeSKAKEILetkpenlPSVTFVGNYLQSFRP-----KPRPAGLEDSNELDEetgNGQLQLG 298
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 224 NRAL------CYTKIRELQMALTDYGivlLLDATETVKLNtflNRGLIYVELGQYGFALEDFKQA-ALISRTNGSLCHAT 296
Cdd:TIGR00990 299 LKSPeskadeSYEEAARAFEKALDLG---KLGEKEAIALN---LRGTFKCLKGKHLEALADLSKSiELDPRVTQSYIKRA 372
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 297 AMCHHRiNEFEEAVNFFTWALKINPCFLDAYVGRGNSYMEYGHdeaTKQAQKDFLKALHINPAYIKARISFG-------- 368
Cdd:TIGR00990 373 SMNLEL-GDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGE---FAQAGKDYQKSIDLDPDFIFSHIQLGvtqykegs 448
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 369 ---------------------YN-----LQAQGKFQKAWNHFTIAID----TDP--KNYLAYEGRAVVCLQMGNNFA-AM 415
Cdd:TIGR00990 449 iassmatfrrckknfpeapdvYNyygelLLDQNKFDEAIEKFDTAIElekeTKPmyMNVLPLINKALALFQWKQDFIeAE 528
|
410 420 430
....*....|....*....|....*....|..
gi 74353659 416 QDINAAMKI--------STTAEFLTNRGVIHE 439
Cdd:TIGR00990 529 NLCEKALIIdpecdiavATMAQLLLQQGDVDE 560
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
225-321 |
1.93e-04 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 41.87 E-value: 1.93e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 225 RALCYTKIRELQMALTDYGIVLLLDATETVKLNtflNRGLIYVELGQYGFALEDFKQAALISRTNGSLCHATAMCHHRIN 304
Cdd:COG5010 60 SDNLYNKLGDFEESLALLEQALQLDPNNPELYY---NLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLG 136
|
90
....*....|....*..
gi 74353659 305 EFEEAVNFFTWALKINP 321
Cdd:COG5010 137 QDDEAKAALQRALGTSP 153
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
169-282 |
1.97e-04 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 41.53 E-value: 1.97e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 169 KAILNCNKAIKIYPESVRAYLYRGVLKYYNKTYKLAITDLTTAISMDKNSYTAFYNRALCYTKIRELQMALTDYGIVLLL 248
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110
....*....|....*....|....*....|....
gi 74353659 249 DATEtvkLNTFLNRGLIYVELGQYGFALEDFKQA 282
Cdd:COG4235 81 DPDN---PEALYLLGLAAFQQGDYAEAIAAWQKL 111
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
45-116 |
2.13e-04 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 40.75 E-value: 2.13e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 74353659 45 LLAKVQMKAKRTKEAVEVLKKALDAISHSDKGPDAtaisadcLYNLGLCYMEEGNLQMAFDSFTKAVKANPD 116
Cdd:COG1729 35 WLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPDA-------LLKLGLSYLELGDYDKARATLEELIKKYPD 99
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
404-480 |
4.71e-04 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 39.38 E-value: 4.71e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 74353659 404 VCLQMGNNFAAMQDINAAMKIS-TTAEFLTNRGVIHEFMGHKQNAMKdYQDAITLNPKYSLAYFNAGNIYFHHRQFSQ 480
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDpDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDE 77
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
87-389 |
4.76e-04 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 43.05 E-value: 4.76e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 87 LYNLGLCYMEegnlQMAFDSFTKAVKA----------NPDFAESFYQRGLCKVKLHKDSSIL-DFNRAITLNPKHYQAYL 155
Cdd:TIGR00990 294 QLQLGLKSPE----SKADESYEEAARAfekaldlgklGEKEAIALNLRGTFKCLKGKHLEALaDLSKSIELDPRVTQSYI 369
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 156 SRVAFYGLKGRYSKAILNCNKAIKIYPESVRAYLYRGVLKYYNKTYKLAITDLTTAISMDKNSYTAFynralcytkireL 235
Cdd:TIGR00990 370 KRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSH------------I 437
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 236 QMALTDYgivllldatetvKLNTFLNRGLIYVElgqygfALEDFKQAALISRTNGSLCHATamchhriNEFEEAVNFFTW 315
Cdd:TIGR00990 438 QLGVTQY------------KEGSIASSMATFRR------CKKNFPEAPDVYNYYGELLLDQ-------NKFDEAIEKFDT 492
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 316 AL----KINPCFLDA--YVGRGNSYMEYGHD--EATKQAQkdflKALHINPAYIKARISFGYNLQAQGKFQKAWNHFTIA 387
Cdd:TIGR00990 493 AIelekETKPMYMNVlpLINKALALFQWKQDfiEAENLCE----KALIIDPECDIAVATMAQLLLQQGDVDEALKLFERA 568
|
..
gi 74353659 388 ID 389
Cdd:TIGR00990 569 AE 570
|
|
| PLN03088 |
PLN03088 |
SGT1, suppressor of G2 allele of SKP1; Provisional |
102-157 |
5.12e-04 |
|
SGT1, suppressor of G2 allele of SKP1; Provisional
Pssm-ID: 215568 [Multi-domain] Cd Length: 356 Bit Score: 42.47 E-value: 5.12e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 74353659 102 MAFDSFTKAVKANPDFAESFYQRGLCKVKL-HKDSSILDFNRAITLNPKHYQAYLSR 157
Cdd:PLN03088 20 LAVDLYTQAIDLDPNNAELYADRAQANIKLgNFTEAVADANKAIELDPSLAKAYLRK 76
|
|
| TPR_2 |
pfam07719 |
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ... |
84-116 |
5.74e-04 |
|
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 37.50 E-value: 5.74e-04
10 20 30
....*....|....*....|....*....|...
gi 74353659 84 ADCLYNLGLCYMEEGNLQMAFDSFTKAVKANPD 116
Cdd:pfam07719 1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
|
|
| PRK11189 |
PRK11189 |
lipoprotein NlpI; Provisional |
118-225 |
1.07e-03 |
|
lipoprotein NlpI; Provisional
Pssm-ID: 236875 [Multi-domain] Cd Length: 296 Bit Score: 41.03 E-value: 1.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 118 AESFYQRGLCKvklhkDS------SILDFNRAITLNPKHYQAYLSRVAFYGLKGRYSKAILNCNKAIKIYPESVRAYLYR 191
Cdd:PRK11189 64 AQLHYERGVLY-----DSlglralARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNR 138
|
90 100 110
....*....|....*....|....*....|....
gi 74353659 192 GVLKYYNKTYKLAITDLttaismdknsyTAFYNR 225
Cdd:PRK11189 139 GIALYYGGRYELAQDDL-----------LAFYQD 161
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
256-319 |
1.29e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 37.75 E-value: 1.29e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 74353659 256 LNTFLNRGLIYVELGQYGFALEDFKQA-ALISRTNGSLCHATA-------MCHHRINEFEEAVNFFTWALKI 319
Cdd:pfam13424 3 ATALNNLAAVLRRLGRYDEALELLEKAlEIARRLLGPDHPLTAttllnlgRLYLELGRYEEALELLERALAL 74
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
428-461 |
1.71e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 35.86 E-value: 1.71e-03
10 20 30
....*....|....*....|....*....|....
gi 74353659 428 AEFLTNRGVIHEFMGHKQNAMKDYQDAITLNPKY 461
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
437-493 |
1.73e-03 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 37.84 E-value: 1.73e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 74353659 437 IHEFMGHKQNAMKDYQDAITLNPKYSLAYFNAGNIYFHHRQFsqEESLGLAWSLSLD 493
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRY--DEAIALEKALKLD 55
|
|
| type_IV_pilW |
TIGR02521 |
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ... |
84-122 |
1.84e-03 |
|
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Pssm-ID: 131573 [Multi-domain] Cd Length: 234 Bit Score: 40.01 E-value: 1.84e-03
10 20 30
....*....|....*....|....*....|....*....
gi 74353659 84 ADCLYNLGLCYMEEGNLQMAFDSFTKAVKANPDFAESFY 122
Cdd:TIGR02521 135 ARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLL 173
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
164-246 |
1.85e-03 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 38.05 E-value: 1.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 164 KGRYSKAILNCNKAIKIYPESV---RAYLYRGVLKYYNKTYKLAITDLTTAISMDKNSY---TAFYNRALCYTKIRELQM 237
Cdd:COG1729 6 AGDYDEAIAAFKAFLKRYPNSPlapDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPkapDALLKLGLSYLELGDYDK 85
|
....*....
gi 74353659 238 ALTDYGIVL 246
Cdd:COG1729 86 ARATLEELI 94
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
45-116 |
2.65e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 36.98 E-value: 2.65e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 74353659 45 LLAKVQMKAKRTKEAVEVLKKALdAISHSDKGPDATAIsADCLYNLGLCYMEEGNLQMAFDSFTKAVKANPD 116
Cdd:pfam13424 8 NLAAVLRRLGRYDEALELLEKAL-EIARRLLGPDHPLT-ATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| PLN03088 |
PLN03088 |
SGT1, suppressor of G2 allele of SKP1; Provisional |
140-193 |
2.90e-03 |
|
SGT1, suppressor of G2 allele of SKP1; Provisional
Pssm-ID: 215568 [Multi-domain] Cd Length: 356 Bit Score: 40.16 E-value: 2.90e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 74353659 140 FNRAITLNPKHYQAYLSRVAFYGLKGRYSKAILNCNKAIKIYPESVRAYLYRGV 193
Cdd:PLN03088 25 YTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGT 78
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
201-282 |
3.69e-03 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 37.07 E-value: 3.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74353659 201 YKLAITDLTTAISMDKNSYTAFYNRALCYTKIRELQMALtDYGIVLLLDATETvklNTFLNRGLIYVELGQYGFALEDFK 280
Cdd:COG3063 8 LEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNA---EALLNLAELLLELGDYDEALAYLE 83
|
..
gi 74353659 281 QA 282
Cdd:COG3063 84 RA 85
|
|
| TPR_8 |
pfam13181 |
Tetratricopeptide repeat; |
84-116 |
5.09e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 404131 [Multi-domain] Cd Length: 33 Bit Score: 34.68 E-value: 5.09e-03
10 20 30
....*....|....*....|....*....|...
gi 74353659 84 ADCLYNLGLCYMEEGNLQMAFDSFTKAVKANPD 116
Cdd:pfam13181 1 AEAYYNLGLIYLKLGDYEEAKEYYEKALELDPD 33
|
|
| TPR_16 |
pfam13432 |
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
45-116 |
8.19e-03 |
|
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 35.00 E-value: 8.19e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 74353659 45 LLAKVQMKAKRTKEAVEVLKKALDAishSDKGPDAtaisADCLYNLGLCYMEEGNLQMAFDSFTKAVKANPD 116
Cdd:pfam13432 2 ALARAALRAGDYDDAAAALEAALAR---FPESPDA----AAALLLLGLAALRQGRLAEAAAAYRAALRAAPG 66
|
|
| |
