|
Name |
Accession |
Description |
Interval |
E-value |
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
63-548 |
6.56e-17 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 84.99 E-value: 6.56e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 63 KQLLAAQGQLQSSTAQLQVELLQSQTKLSELEAQVRKLELERSQHRMLLESLQQRHQADLELIEDAH--RSHVKVLETSY 140
Cdd:COG1196 235 RELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEqdIARLEERRREL 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 141 QQREEQLRREKEVLSAQHASYCQEAERARTELVAQHQRQMAMAEQEKDQEVARLRELQ-----QASILEMRKDHEHQLQR 215
Cdd:COG1196 315 EERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAelaeaEEELEELAEELLEALRA 394
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 216 LKMLKDQEIDAVTSATSHTRSLNGIIEQMEKFSSSLNTLSSRVEASH--VTTSQERELGIRQQDEQLRALQERLGRQQRD 293
Cdd:COG1196 395 AAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEeaLEEAAEEEAELEEEEEALLELLAELLEEAAL 474
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 294 MEEERSRLQEVIGKMEVRLSEQSRLLEQERWRVAAEKSKAESAQRTLEEQRKIMVQQVAMEREELERAKSALLEEQKSVM 373
Cdd:COG1196 475 LEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVE 554
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 374 N-----KCGEERRRLAAEWAEFFTQQKLSKERAEREAERAMHADTQRESTIISLTKEQAELTVRACEL------RAKEEK 442
Cdd:COG1196 555 DdevaaAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLlgrtlvAARLEA 634
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 443 LIAEREALERERQELRLEKDRLHKASLRLQARAQEVEHMSKVASKKYEEGEQALQEARQMQTEQQGRLQVVQRQQEWLRQ 522
Cdd:COG1196 635 ALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEE 714
|
490 500
....*....|....*....|....*.
gi 197246877 523 QEQRVHQEHLSLAQQRLQLDRVRQEA 548
Cdd:COG1196 715 ERLEEELEEEALEEQLEAEREELLEE 740
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
62-530 |
3.50e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 66.50 E-value: 3.50e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 62 QKQLLAAQGQLQSSTAQLQVELLQSQTKLSELEAQVRKLELERSQHRMLLESLQQRHQADLELIEDAHRSHVKVLETSYQ 141
Cdd:COG1196 311 RRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLE 390
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 142 QREEQLRREKEVLSAqhasycQEAERARTELVAQHQRQMAmAEQEKDQEVARLRELQQASILEMRKDHEHQLQRLKMLKD 221
Cdd:COG1196 391 ALRAAAELAAQLEEL------EEAEEALLERLERLEEELE-ELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLE 463
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 222 QEIDAVTSATSHTRSLNGIIEQMEKFSSSLNTLSS-RVEASHVTTSQERELGIRQQDEQLRALQERLGRQQRDMEEERSR 300
Cdd:COG1196 464 LLAELLEEAALLEAALAELLEELAEAAARLLLLLEaEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAA 543
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 301 LQEVIGkmEVRLSEQSRLLEQERWRVAAEKSKAESAQRTLEEQRKIMV----QQVAMEREELERAKSALLEEQKSVMNKC 376
Cdd:COG1196 544 LAAALQ--NIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAaalaRGAIGAAVDLVASDLREADARYYVLGDT 621
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 377 GEERRRLAAEWAEFFTQQKLSKERAEREAERAMHADTQRESTIISLTKEQAELTVRACELRAKEEKLIAEREALERERQE 456
Cdd:COG1196 622 LLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLA 701
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 197246877 457 LRLEKDRLHKASLRLQARAQEVEHMSKVASKKYEEGEQALQEARQMQTEQQGRLQVVQRQQEWLRQQEQRVHQE 530
Cdd:COG1196 702 EEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLERE 775
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
273-570 |
2.05e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 64.19 E-value: 2.05e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 273 IRQQDEQLRALQERLGRQQRDMEEERSRLQEVIGKMEvRLSEQSRLLEQERWRVAAEKSKAESAQRTLEEQRKIMVQQVA 352
Cdd:COG1196 234 LRELEAELEELEAELEELEAELEELEAELAELEAELE-ELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRR 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 353 MEREELERAKSALlEEQKSVMNKCGEERRRLAAEWAEFFTQQKLSKERAEREAERAMHADTQRESTIisltKEQAELTVR 432
Cdd:COG1196 313 ELEERLEELEEEL-AELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAE----EELEELAEE 387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 433 ACELRAKEEKLIAEREALERERQELRLEKDRLHKASLRLQARAQEVEHMSKVASKKYEEGEQALQEARQMQTEQQGRLQV 512
Cdd:COG1196 388 LLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAE 467
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 197246877 513 VQRQQEWLRQQEQRVHQEHLSLAQQRLQLDRVRQEAPSSLPGLPPRAQGPAASSLDAV 570
Cdd:COG1196 468 LLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGA 525
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
257-525 |
1.50e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 61.31 E-value: 1.50e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 257 RVEASHVTTSQERELGIRQQDEQLRALQERLGRQQRDMEEERsRLQEVIGKMEVRLSEQSRLLEQERwrVAAEKSKAESA 336
Cdd:PTZ00121 1141 KAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAAR-KAEEVRKAEELRKAEDARKAEAAR--KAEEERKAEEA 1217
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 337 QRTLEEQRKIMVQQVAMEREELERAKSALLEEQKSVMNKCGEERRRLAAEWAEFFTQQKLSKERAEREAERAMHADTQR- 415
Cdd:PTZ00121 1218 RKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKk 1297
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 416 --ESTIISLTKEQAELTVRACELRAKEEKLIAEREALERERQELRLEKDRLHKASLRLQARAQEVEHMSKVASKKYEEGE 493
Cdd:PTZ00121 1298 aeEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAK 1377
|
250 260 270
....*....|....*....|....*....|..
gi 197246877 494 QALQEARQMQTEQQGRLQVVQRQQEWLRQQEQ 525
Cdd:PTZ00121 1378 KKADAAKKKAEEKKKADEAKKKAEEDKKKADE 1409
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
142-546 |
2.24e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 60.93 E-value: 2.24e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 142 QREEQLRREKEVLSAQHASYCQEAERARTELVAQHQRQmamAEQEKDQEVARLRElqqasilEMRKDHEHQLQRLKMLKD 221
Cdd:PTZ00121 1182 RKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARK---AEDAKKAEAVKKAE-------EAKKDAEEAKKAEEERNN 1251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 222 QEIdavtsatshtrslngiieqmEKFSSSLNTLSSRVEASHVTTSQERELGIRQQDEQLRALQERLGRQQRDMEEERSRl 301
Cdd:PTZ00121 1252 EEI--------------------RKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKK- 1310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 302 qevigkmevrlSEQSRLLEQERWRVAAEKSKAESAQRTLEEQRKimVQQVAMEREELERAKSALLEEQKSVMNKCGEERR 381
Cdd:PTZ00121 1311 -----------AEEAKKADEAKKKAEEAKKKADAAKKKAEEAKK--AAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAK 1377
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 382 RLAAEWAEFFTQQKLSKERAEREAERAMHAD----TQRESTIISLTKEQAELTVRACELRAK-EEKLIAE---REALERE 453
Cdd:PTZ00121 1378 KKADAAKKKAEEKKKADEAKKKAEEDKKKADelkkAAAAKKKADEAKKKAEEKKKADEAKKKaEEAKKADeakKKAEEAK 1457
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 454 RQELRLEKDRLHKASLRLQARAQEVEHMSKvASKKYEEGEQALQEARQMQTEQ----QGRLQVVQRQQEWLRQQEQRVHQ 529
Cdd:PTZ00121 1458 KAEEAKKKAEEAKKADEAKKKAEEAKKADE-AKKKAEEAKKKADEAKKAAEAKkkadEAKKAEEAKKADEAKKAEEAKKA 1536
|
410
....*....|....*..
gi 197246877 530 EHLSLAQQRLQLDRVRQ 546
Cdd:PTZ00121 1537 DEAKKAEEKKKADELKK 1553
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
67-547 |
2.36e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 60.93 E-value: 2.36e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 67 AAQGQLQSSTAQLQVELLQSQTKLSELEAQVRKLELERSQHRMLLESLQQRHQADLELIEDAHRSHVKVLETSYQQREEQ 146
Cdd:PTZ00121 1324 AEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEED 1403
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 147 LRREKEVLSAQHASYCQEAERARTELVAQHQRQMAMAEQEKDQEVARLRELQQASILEMRKDHEHQlqrlkmlkdQEIDA 226
Cdd:PTZ00121 1404 KKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEA---------KKADE 1474
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 227 VTSATSHTRSLNGIIEQMEKFSSSLNTLSSRVEAshvttsqerelgiRQQDEQLRALQERLGRQQRDMEEERSRLQEVIG 306
Cdd:PTZ00121 1475 AKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEA-------------KKKADEAKKAEEAKKADEAKKAEEAKKADEAKK 1541
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 307 KMEVRLSEQSRllEQERWRVAAEKSKAESAQRtlEEQRKIMVQQVAmerEELERAKSALLEEqksvMNKCGEERRRLAAE 386
Cdd:PTZ00121 1542 AEEKKKADELK--KAEELKKAEEKKKAEEAKK--AEEDKNMALRKA---EEAKKAEEARIEE----VMKLYEEEKKMKAE 1610
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 387 waefftqqKLSKERAEREAERAMHADTQRESTIISLTKEQAELTVRACELRAKEEKLIAEREALERER-------QELRL 459
Cdd:PTZ00121 1611 --------EAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAeedkkkaEEAKK 1682
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 460 EKDRLHKASLRLQARAQEVEHMSKVASKKYEEGEQAlQEARQMQTEQQGRLQVVQRQQEWLRQ--QEQRVHQEHLSLAQQ 537
Cdd:PTZ00121 1683 AEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKA-EELKKAEEENKIKAEEAKKEAEEDKKkaEEAKKDEEEKKKIAH 1761
|
490
....*....|
gi 197246877 538 RLQLDRVRQE 547
Cdd:PTZ00121 1762 LKKEEEKKAE 1771
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
257-534 |
6.63e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 59.30 E-value: 6.63e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 257 RVEASHVTTSQERELG-----IRQQDEQLRALQ---ERLGRQQRDMEEERSRLQEVIGKMEVRLSEQSRLLEQERWRVAA 328
Cdd:TIGR02168 665 SAKTNSSILERRREIEeleekIEELEEKIAELEkalAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQ 744
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 329 EKSKAESAQRTLEE---QRKIMVQQVAMEREELERAKSALLEEQKSV---MNKCGEERRRLAAEWAEFF-TQQKLSKERA 401
Cdd:TIGR02168 745 LEERIAQLSKELTEleaEIEELEERLEEAEEELAEAEAEIEELEAQIeqlKEELKALREALDELRAELTlLNEEAANLRE 824
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 402 EREAERAMHADTQR-----ESTIISLTKEQAELTVRACELRAKEEKLIAEREALERERQELRLekdRLHKASLRLQARAQ 476
Cdd:TIGR02168 825 RLESLERRIAATERrledlEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEE---ALALLRSELEELSE 901
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 197246877 477 EVEHMSKVASKKYEEGEQALQEARQMQTEQQGRLQVVQRQQEWLRQQEQRVHQEHLSL 534
Cdd:TIGR02168 902 ELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEAL 959
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
62-507 |
1.78e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 57.84 E-value: 1.78e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 62 QKQLLAAQGQLQSSTAQLQVELLQSQTKLSELEAQVRKLELERSQHRMLLESLQQRHQADleliedahrsHVKVLETSYQ 141
Cdd:PTZ00121 1349 KAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKAD----------ELKKAAAAKK 1418
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 142 QREEQLRREKEVLSAQHASYCQEAERARTELVAQHQRQMAMAEQEKDQEVARLRELQQASILEMRKDHEHQlQRLKMLKD 221
Cdd:PTZ00121 1419 KADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAK-KKAEEAKK 1497
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 222 QEIDAVTSATSHTRSLNGIIEQMEKFSSSLNTLSSRVEASHVTTSQERELG--IRQQDEQLRALQERLGRQQRDMEEERS 299
Cdd:PTZ00121 1498 KADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKAdeLKKAEELKKAEEKKKAEEAKKAEEDKN 1577
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 300 ---RLQEVIGKME-VRLSEQSRLLEQERWRVAAEKSKAESAQ------RTLEEQRKIMVQQVAMEREELERAKSALLEEQ 369
Cdd:PTZ00121 1578 malRKAEEAKKAEeARIEEVMKLYEEEKKMKAEEAKKAEEAKikaeelKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEE 1657
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 370 KSVMNKCGEERRrlaAEWAEFFTQQKLSKERAEREAERAMHADTQRESTIISLTKEQAELTVRACELRAKEEKLIAEREA 449
Cdd:PTZ00121 1658 ENKIKAAEEAKK---AEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEE 1734
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 197246877 450 LERERQE-------LRLEKDRLHKASLRLQARAQEVEHMSKVASKKYEEGEQALQEARQMQTEQQ 507
Cdd:PTZ00121 1735 AKKEAEEdkkkaeeAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKK 1799
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
63-344 |
1.80e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 57.76 E-value: 1.80e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 63 KQLLAAQGQLQSSTAQLQVELLQSQTKLSELEAQVRKLELERSQHRMLLESLQQRHQADLELIEDahrshVKVLETSYQQ 142
Cdd:TIGR02168 235 EELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISR-----LEQQKQILRE 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 143 REEQLRREKEVLSAQHASYCQEAERARTELVAQhqrqmamaeQEKDQEVARLRELQQASILEMRKDHEHQLQRLKMLKDQ 222
Cdd:TIGR02168 310 RLANLERQLEELEAQLEELESKLDELAEELAEL---------EEKLEELKEELESLEAELEELEAELEELESRLEELEEQ 380
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 223 EIDAVTSATSHTRSLNGIIEQMEKFSSSLNTLSSRVEAshvTTSQERELGIRQQDEQLRALQERLGRQQRDMEEERSRLQ 302
Cdd:TIGR02168 381 LETLRSKVAQLELQIASLNNEIERLEARLERLEDRRER---LQQEIEELLKKLEEAELKELQAELEELEEELEELQEELE 457
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 197246877 303 EVIGKMEvRLSEQSRLLEQERWRVAAEKSKAESAQRTLEEQR 344
Cdd:TIGR02168 458 RLEEALE-ELREELEEAEQALDAAERELAQLQARLDSLERLQ 498
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
143-553 |
2.27e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 57.25 E-value: 2.27e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 143 REEQLRREKEVLSAQHASYCQEAERARTELvAQHQRQMAMAEQEKDQEVARLRELQQAsILEMRKDHEHQLQRLKMLKDQ 222
Cdd:COG1196 219 KEELKELEAELLLLKLRELEAELEELEAEL-EELEAELEELEAELAELEAELEELRLE-LEELELELEEAQAEEYELLAE 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 223 EIDAVTSATSHTRSLNGIIEQMEKFSSSLNTLssrveashvttsQERELGIRQQDEQLRALQERLGRQQRDMEEERSRLQ 302
Cdd:COG1196 297 LARLEQDIARLEERRRELEERLEELEEELAEL------------EEELEELEEELEELEEELEEAEEELEEAEAELAEAE 364
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 303 EVIGKMEVRLSEQSRLLEqERWRVAAEKSKAESAQRTLEEQRKIMVQQVAMEREELERAKSALLEEQKSVMNKCGEERRR 382
Cdd:COG1196 365 EALLEAEAELAEAEEELE-ELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEA 443
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 383 LAAEWAEfftqqklskeraereaeramhaDTQRESTIISLTKEQAELTVRACELRAKEEKLIAEREALeRERQELRLEKD 462
Cdd:COG1196 444 LEEAAEE----------------------EAELEEEEEALLELLAELLEEAALLEAALAELLEELAEA-AARLLLLLEAE 500
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 463 RLHKASLRLQARAQEVEHMSKVASKKYEEGEQALQEARQMQTEQQGRLQVVQRQQEWLRQQEQRVHQEHLSLAQQRLQLD 542
Cdd:COG1196 501 ADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLD 580
|
410
....*....|.
gi 197246877 543 RVRQEAPSSLP 553
Cdd:COG1196 581 KIRARAALAAA 591
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
237-518 |
3.25e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.99 E-value: 3.25e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 237 LNGIIEQMEKFSSSLNTLSSRVEASHVTTSQERELGI-------RQQDEQLRALQERLGRQQRDMEEERSRLQEVIGKME 309
Cdd:TIGR02168 191 LEDILNELERQLKSLERQAEKAERYKELKAELRELELallvlrlEELREELEELQEELKEAEEELEELTAELQELEEKLE 270
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 310 ------VRLSEQSRLLEQERWRVAAEKSKAESAQRTLEEQRKIMVQQVAMEREELERAKS---------ALLEEQKSVMN 374
Cdd:TIGR02168 271 elrlevSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESkldelaeelAELEEKLEELK 350
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 375 KCGEERRRLAAEWAEFFTQQKLSKERAEREAERAMHADTQRESTIISLTKEQAELTVRACELRAKEEKLIAEREALERER 454
Cdd:TIGR02168 351 EELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKL 430
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 197246877 455 QELRLEK-----DRLHKASLRLQARAQEVEHMSKVASKKYEEGEQALQEARQMQTEQQGRLQVVQRQQE 518
Cdd:TIGR02168 431 EEAELKElqaelEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQE 499
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
94-546 |
5.67e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 56.30 E-value: 5.67e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 94 EAQVRKLELERSQHRML-LESLQQRHQADLELIEDAH--RSHVKVLETSYQQREEQLRREKEVLSAQHASYCQEAERART 170
Cdd:PTZ00121 1239 AEEAKKAEEERNNEEIRkFEEARMAHFARRQAAIKAEeaRKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKAD 1318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 171 ELV--AQHQRQMAMA------EQEKDQEVARLRELQQASILEMRKDHEHQLQRLKMLKDQEIDAVTSATSHTRSLNGIIE 242
Cdd:PTZ00121 1319 EAKkkAEEAKKKADAakkkaeEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKK 1398
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 243 QMEKFSSSLNTLSSRVEASHVTTSQERELGIRQQDEQLR--ALQERLGRQQRDMEEERSRLQEVIGKME--------VRL 312
Cdd:PTZ00121 1399 KAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKkkAEEAKKADEAKKKAEEAKKAEEAKKKAEeakkadeaKKK 1478
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 313 SEQSRLLEQERWRVAAEKSKAESAQRTLEEQRKIMVQQVAMEREELERAKSALLEEQKSVMNKCGEERR----RLAAEW- 387
Cdd:PTZ00121 1479 AEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKadelKKAEELk 1558
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 388 -------AEFFTQQKLSKERAEREAERAMHADTQRESTIISLTKE----QAELTVRACELRAKEEKLIAEREALERERQE 456
Cdd:PTZ00121 1559 kaeekkkAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEekkmKAEEAKKAEEAKIKAEELKKAEEEKKKVEQL 1638
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 457 LRLEKDRLHKASlrlQARAQEVEHMSKVA--SKKYEEGEQALQEARQMQTEQQGRLQVVQRQQEWLRQQEQ--RVHQEHL 532
Cdd:PTZ00121 1639 KKKEAEEKKKAE---ELKKAEEENKIKAAeeAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEElkKKEAEEK 1715
|
490
....*....|....
gi 197246877 533 SLAQQRLQLDRVRQ 546
Cdd:PTZ00121 1716 KKAEELKKAEEENK 1729
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
90-372 |
7.98e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.83 E-value: 7.98e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 90 LSELEAQVRKLELERSQHRMLLESLQQRHQADLELI------EDAHRSHVKVLETSYQQREEQLRREKEVLSAQHA---S 160
Cdd:TIGR02168 195 LNELERQLKSLERQAEKAERYKELKAELRELELALLvlrleeLREELEELQEELKEAEEELEELTAELQELEEKLEelrL 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 161 YCQEAERARTELVA---QHQRQMAMAEQEKDQEVARLRELQQaSILEMRKDHEHQLQRLKMLKDQEIDAVTSATSHTRSL 237
Cdd:TIGR02168 275 EVSELEEEIEELQKelyALANEISRLEQQKQILRERLANLER-QLEELEAQLEELESKLDELAEELAELEEKLEELKEEL 353
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 238 NGIIEQMEKFSSSLNTLSSRVEAS--HVTTSQERELGIRQQDEQLRALQERLGRQQRDMEEERSRLQEVIGkmevrlSEQ 315
Cdd:TIGR02168 354 ESLEAELEELEAELEELESRLEELeeQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIE------ELL 427
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 197246877 316 SRLLEQERWRVAAEKSKAESAQRTLEEQRKIMVQQVAMEREELERAKSALLEEQKSV 372
Cdd:TIGR02168 428 KKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAEREL 484
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
269-551 |
2.01e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 51.22 E-value: 2.01e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 269 RELGIRQQDEQLRALQErLGRQQRDMEEERSRLQEVIGKMEVRLSEQSRLLEQ--ERWRVAAEKSKAESAQRTLEEQRKI 346
Cdd:TIGR02169 218 KEKREYEGYELLKEKEA-LERQKEAIERQLASLEEELEKLTEEISELEKRLEEieQLLEELNKKIKDLGEEEQLRVKEKI 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 347 mvQQVAMEREELERAKSALLEEQKSVMN---KCGEERRRLAAEWAEFFTQQklskERAEREAERAMHADTQRESTIISLT 423
Cdd:TIGR02169 297 --GELEAEIASLERSIAEKERELEDAEErlaKLEAEIDKLLAEIEELEREI----EEERKRRDKLTEEYAELKEELEDLR 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 424 KEQAELTVRACELRAKEEKLIAEREALERERQELRLEKDRLHKASLRLQARAQEVEHMSKVASKKYEEGEQALQEARQMQ 503
Cdd:TIGR02169 371 AELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEI 450
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 197246877 504 TEQQGRLQVVQRQQEWLRQQ-----------EQRVHQEHLSLAQQRLQLDRVRQEAPSS 551
Cdd:TIGR02169 451 KKQEWKLEQLAADLSKYEQElydlkeeydrvEKELSKLQRELAEAEAQARASEERVRGG 509
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
177-368 |
2.78e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 50.68 E-value: 2.78e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 177 QRQMAMAEQEKDQEVARLRELQQAsiLEMRKDHEHQLQRLKMLKDQEIDaVTSATSHTRSLNGIIEQMEKFSSSLNTLSS 256
Cdd:COG4913 616 EAELAELEEELAEAEERLEALEAE--LDALQERREALQRLAEYSWDEID-VASAEREIAELEAELERLDASSDDLAALEE 692
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 257 RVEAShvttsQERELGIRQQDEQLRALQERLGRQQRDMEEERSRLQEVIGKMEVRLSEQSRLLEQERWRVAAEKSKAESA 336
Cdd:COG4913 693 QLEEL-----EAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVEREL 767
|
170 180 190
....*....|....*....|....*....|..
gi 197246877 337 QRTLEEQRKIMVQQVAMEREELERAKSALLEE 368
Cdd:COG4913 768 RENLEERIDALRARLNRAEEELERAMRAFNRE 799
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
139-464 |
4.03e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 50.06 E-value: 4.03e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 139 SYQQREEQLRREKEVLSAQHASYCQEAERARTEL--VAQHQRQMAMAEQEKDQEVARLRElqqaSILEMRKDHEHQLQRL 216
Cdd:TIGR02168 674 ERRREIEELEEKIEELEEKIAELEKALAELRKELeeLEEELEQLRKELEELSRQISALRK----DLARLEAEVEQLEERI 749
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 217 KMLKDQEIDAVTSATSHTRSLNGIIEQMEKFSSSLNTLSSRVEASHVTTSQERElGIRQQDEQLRALQERLGRQQRDMEE 296
Cdd:TIGR02168 750 AQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALRE-ALDELRAELTLLNEEAANLRERLES 828
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 297 ERSRLQEvIGKMEVRLSEQSRLLEQERWRVAAEKSKAESAQRTLEEQRKIMVQQVAMEREELERAKSALlEEQKSVMNKC 376
Cdd:TIGR02168 829 LERRIAA-TERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSEL-EELSEELREL 906
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 377 GEERRRLAAEWAEffTQQKLSKERAEREAERamhadtQRESTIISLTKEQAELTVRacELRAKEEKLIAEREALERERQE 456
Cdd:TIGR02168 907 ESKRSELRRELEE--LREKLAQLELRLEGLE------VRIDNLQERLSEEYSLTLE--EAEALENKIEDDEEEARRRLKR 976
|
....*...
gi 197246877 457 LRLEKDRL 464
Cdd:TIGR02168 977 LENKIKEL 984
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
275-518 |
5.30e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 49.75 E-value: 5.30e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 275 QQDEQLRALQERLGRQQRDMEEERSRLQEVIGKMEVRLSEQSRLLEQERW----------RVAAEKSKAESAQRTLEEQR 344
Cdd:PTZ00121 1104 KKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRveiarkaedaRKAEEARKAEDAKKAEAARK 1183
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 345 KIMVQQV-----AMEREELERAKSALLEEQKSVMNKCGEERRRLAAEWAEfFTQQKLSKERAEREAERAMHADTQRESTI 419
Cdd:PTZ00121 1184 AEEVRKAeelrkAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAE-EAKKDAEEAKKAEEERNNEEIRKFEEARM 1262
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 420 ISLTKEQ----AELTVRACELRAKEEKLIAE--REALERERQELRLEKDRLHKASLRLQARAQEVEHMSKVASKKYEEGE 493
Cdd:PTZ00121 1263 AHFARRQaaikAEEARKADELKKAEEKKKADeaKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAK 1342
|
250 260
....*....|....*....|....*
gi 197246877 494 QALQEARQMQTEQQGRLQVVQRQQE 518
Cdd:PTZ00121 1343 KAAEAAKAEAEAAADEAEAAEEKAE 1367
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
89-451 |
6.21e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 49.68 E-value: 6.21e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 89 KLSELEAQVRKLELERSQHRMLLESLQQRHQADLELIEDAHRSHVKvLETSYQQREEQLRREKEVLsAQHASYCQEAERA 168
Cdd:TIGR02169 675 ELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGE-IEKEIEQLEQEEEKLKERL-EELEEDLSSLEQE 752
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 169 RTElvaqhqrqmamAEQEKDQEVARLRELQqASILEMRKDHEHQLQRLKMLKDQEIDAVTSATSHTRS-LNGIIEQMEKF 247
Cdd:TIGR02169 753 IEN-----------VKSELKELEARIEELE-EDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSrIEARLREIEQK 820
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 248 SSSLnTLSSRVEASHVTTSQERELGIRQQDEQLRALQERLGRQQRDMEEERSRLQEVIGKMEVRLSEqsrlLEQERWRVA 327
Cdd:TIGR02169 821 LNRL-TLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGD----LKKERDELE 895
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 328 AEKSKAESAQRTLEEQRKIMVQQVamerEELERAKSALLEEQKSVmnkcGEERRRLAAEWAEFFTQQKLSKERAEreaer 407
Cdd:TIGR02169 896 AQLRELERKIEELEAQIEKKRKRL----SELKAKLEALEEELSEI----EDPKGEDEEIPEEELSLEDVQAELQR----- 962
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 197246877 408 aMHADTQRESTIISLTKEQAELTV-RACELRAKEEKLIAEREALE 451
Cdd:TIGR02169 963 -VEEEIRALEPVNMLAIQEYEEVLkRLDELKEKRAKLEEERKAIL 1006
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
63-308 |
5.63e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 46.59 E-value: 5.63e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 63 KQLLAAQGQLQSSTAQLQVELLQSQTKLSELEAQVRKLELERSQHRMLLESLQQRHQADLELIEDAHRSHVKVLET---- 138
Cdd:TIGR02168 778 AEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDiesl 857
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 139 -----SYQQREEQLRREKEVLSAQHASYCQEAERARTELVAQhQRQMAMAEQEKDQEVARLRELQqasilEMRKDHEHQL 213
Cdd:TIGR02168 858 aaeieELEELIEELESELEALLNERASLEEALALLRSELEEL-SEELRELESKRSELRRELEELR-----EKLAQLELRL 931
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 214 QRLKMLKDQEIDAVTSatSHTRSLNGIIEQMEKFSSSLNTLSSRVEAshvTTSQERELGIRQQD--EQLRALQER---LG 288
Cdd:TIGR02168 932 EGLEVRIDNLQERLSE--EYSLTLEEAEALENKIEDDEEEARRRLKR---LENKIKELGPVNLAaiEEYEELKERydfLT 1006
|
250 260
....*....|....*....|
gi 197246877 289 RQQRDMEEERSRLQEVIGKM 308
Cdd:TIGR02168 1007 AQKEDLTEAKETLEEAIEEI 1026
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
57-533 |
6.85e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.91 E-value: 6.85e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 57 PGSGFQKQLLAAQGQLQSSTAQLQvELLQSQTKLSELEAQVRKLELERSQHRMLLESLQQRHQA-DLELIEDAHRSHVKV 135
Cdd:COG4717 65 KPELNLKELKELEEELKEAEEKEE-EYAELQEELEELEEELEELEAELEELREELEKLEKLLQLlPLYQELEALEAELAE 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 136 LETSYQQREEQLRREKEvLSAQHASYCQEAERARTELVAQHQRQMAMAEQEKDQEVARLRELQQAsiLEMRKDHEHQLQR 215
Cdd:COG4717 144 LPERLEELEERLEELRE-LEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQR--LAELEEELEEAQE 220
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 216 LKMLKDQEIDAVTSATSHTRSLNGIIEQMEKFSSSLNTLSSRVEASHVTTSQERELGIRQQDEQLRALQ-ERLGRQQRDM 294
Cdd:COG4717 221 ELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLfLLLAREKASL 300
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 295 EEERSRLQEVIGKMEVRLSEQSRLLEQERWRVAAEKSKAESAQRTLEEQRKIMVQqvaMEREELERAKSALLEEQKSVMN 374
Cdd:COG4717 301 GKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLRE---AEELEEELQLEELEQEIAALLA 377
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 375 KCGEERRRLAAEWAEFFTQQKlskeraereaeramhaDTQRESTIISLTKEQAELTVRACELRAKEEKLIAEREALERER 454
Cdd:COG4717 378 EAGVEDEEELRAALEQAEEYQ----------------ELKEELEELEEQLEELLGELEELLEALDEEELEEELEELEEEL 441
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 197246877 455 QELRLEKDRLHKASLRLQARAQEVEHmskvaSKKYEEGEQALQEARQMQTEQQGRLQVVQRQQEWLRQQEQRVHQEHLS 533
Cdd:COG4717 442 EELEEELEELREELAELEAELEQLEE-----DGELAELLQELEELKAELRELAEEWAALKLALELLEEAREEYREERLP 515
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
274-474 |
1.08e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 45.68 E-value: 1.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 274 RQQDEQLRALQErLGRQQRDMEEERSRLQEVIGKMEV-RLSEQSRLLEQERWRVAAEKSKAESAQRTLEEQRKIMVQQVA 352
Cdd:COG4913 248 REQIELLEPIRE-LAERYAAARERLAELEYLRAALRLwFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELD 326
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 353 MEREELERAKSALLEEQKSVMNKCGEERRRLAAEWAEFftQQKLSKERAEREAERAMHADTQRE--STIISLTKEQAELT 430
Cdd:COG4913 327 ELEAQIRGNGGDRLEQLEREIERLERELEERERRRARL--EALLAALGLPLPASAEEFAALRAEaaALLEALEEELEALE 404
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 197246877 431 VRACELRAKEEKLIAEREALERERQELRLEKDRLHKASLRLQAR 474
Cdd:COG4913 405 EALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLALRDA 448
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
426-506 |
1.32e-04 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 44.77 E-value: 1.32e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 426 QAELTVRACELRAKEEKLIAEREALERERQELRLEKDRLHKASLRLQARAQEVEHMSKVASKKYEEGEQALQEARQMQTE 505
Cdd:PRK12704 74 EKELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLTAE 153
|
.
gi 197246877 506 Q 506
Cdd:PRK12704 154 E 154
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
63-552 |
3.55e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 43.89 E-value: 3.55e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 63 KQLLAAQGQLQSSTAQLQVELLQSQTKLSELEAQVRKLELERSQHRMLLESLQQRHQADLELIEDAHRSHVKVLETSYQQ 142
Cdd:TIGR02168 361 EELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQA 440
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 143 REEQLRREKEVLSAQHASYCQEAERARtELVAQHQRQMAMAEQEKDQEVARLRELQQasileMRKDHEHQLQRLKMLKDQ 222
Cdd:TIGR02168 441 ELEELEEELEELQEELERLEEALEELR-EELEEAEQALDAAERELAQLQARLDSLER-----LQENLEGFSEGVKALLKN 514
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 223 EIDAvtsaTSHTRSLNGIIEQMEKFSSSLNT-LSSRVEASHVTTSQERELGI------------------------RQQD 277
Cdd:TIGR02168 515 QSGL----SGILGVLSELISVDEGYEAAIEAaLGGRLQAVVVENLNAAKKAIaflkqnelgrvtflpldsikgteiQGND 590
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 278 EQLRALQERLGRQQRDMEEERSRLQEVIGKMEVRLS---------EQSRLLEQE-------------RWRVAAEKSKAES 335
Cdd:TIGR02168 591 REILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLvvddldnalELAKKLRPGyrivtldgdlvrpGGVITGGSAKTNS 670
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 336 AQ-------RTLEEQRKIMVQQVAMEREELERAKSALLEeqksvMNKCGEERRRLAAEWAEFFTQQKLSKERAEREAERA 408
Cdd:TIGR02168 671 SIlerrreiEELEEKIEELEEKIAELEKALAELRKELEE-----LEEELEQLRKELEELSRQISALRKDLARLEAEVEQL 745
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 409 MHADTQRESTIISLTKEQAELTVRACELRAKEEKLIAEREALE-------RERQELRLEKDRLHKASLRLQARAQEVEHM 481
Cdd:TIGR02168 746 EERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEaqieqlkEELKALREALDELRAELTLLNEEAANLRER 825
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 197246877 482 SKVASKKYEEGEQALQEARQMQTEQQGRLQVVQRQQEWLRQQEQRVHQEHLSLAQQRLQLDRVRQEAPSSL 552
Cdd:TIGR02168 826 LESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSEL 896
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
54-359 |
3.58e-04 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 43.89 E-value: 3.58e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 54 SLLPG--SGFQKQLLAAQGQLQS----STAQLQVELLQSQTKLSELEAQVRKLELERsqhrmLLESLQQrhqadlELIed 127
Cdd:PRK10929 140 SQLPQqqTEARRQLNEIERRLQTlgtpNTPLAQAQLTALQAESAALKALVDELELAQ-----LSANNRQ------ELA-- 206
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 128 ahRSHVKVLETSYQQREEQLRREKEVLSAQHAsycQEAERA--RTELvaqhqrqmaMAEQEKDQEVARLRELQQASilEM 205
Cdd:PRK10929 207 --RLRSELAKKRSQQLDAYLQALRNQLNSQRQ---REAERAleSTEL---------LAEQSGDLPKSIVAQFKINR--EL 270
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 206 RKDHEHQLQRLKMLKDQEIDAVTSATSHTRSLNGIIEQMEKFSSSlNTLSsrveashvttsqerelgirqqdEQLRALQE 285
Cdd:PRK10929 271 SQALNQQAQRMDLIASQQRQAASQTLQVRQALNTLREQSQWLGVS-NALG----------------------EALRAQVA 327
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 197246877 286 RLGR----QQRDMEEERSRLQevigkmevRLSEQSrLLEQERwrvAAEKSKAESAQRTLEEQRKIMVQQVAMEREELE 359
Cdd:PRK10929 328 RLPEmpkpQQLDTEMAQLRVQ--------RLRYED-LLNKQP---QLRQIRQADGQPLTAEQNRILDAQLRTQRELLN 393
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
328-569 |
5.82e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 43.12 E-value: 5.82e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 328 AEKSKAESAQRTLEEQRKIMVQQVAMEREELERAKSALLEEQKSVMNKCGEERRRLAAewaeffTQQKLSKERAEREAER 407
Cdd:TIGR02168 207 RQAEKAERYKELKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQE------LEEKLEELRLEVSELE 280
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 408 AMHADTQREstIISLTKEQAELTVRACELRAKEEKLIAEREALERERQELRLEKDRLHKASLRLQARAQEVEHMSKVASK 487
Cdd:TIGR02168 281 EEIEELQKE--LYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEA 358
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 488 KYEEGEQALQEARQMQTEQQGRLQVVQRQQEWLRQQEQRVHQEHLSLAQQRLQLDRVRQEAPSSLPGLPPRAQGPAASSL 567
Cdd:TIGR02168 359 ELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKEL 438
|
..
gi 197246877 568 DA 569
Cdd:TIGR02168 439 QA 440
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
71-347 |
1.21e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 42.03 E-value: 1.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 71 QLQSSTAQLQVELLQSQTKLSELE--AQVRKLELERSQHRMLLESLQQRHQADLElIEDAHRSHVKVLETSYQQREEQLR 148
Cdd:pfam17380 317 KLEEAEKARQAEMDRQAAIYAEQErmAMERERELERIRQEERKRELERIRQEEIA-MEISRMRELERLQMERQQKNERVR 395
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 149 REkevLSAQHASYCQEAERARTELVAQHQRQMAMAEQE--KDQEVARLRELQQASILEMRKDHEHQLQRLKMLKDQEIDA 226
Cdd:pfam17380 396 QE---LEAARKVKILEEERQRKIQQQKVEMEQIRAEQEeaRQREVRRLEEERAREMERVRLEEQERQQQVERLRQQEEER 472
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 227 VTSATSHTRSLNGIIEQMEKFSSSLNTLSSRVEASHVTTSQERELGIRQQDEQLRALQERlgRQQRDMEEERSRLQEVig 306
Cdd:pfam17380 473 KRKKLELEKEKRDRKRAEEQRRKILEKELEERKQAMIEEERKRKLLEKEMEERQKAIYEE--ERRREAEEERRKQQEM-- 548
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 197246877 307 kmevrlsEQSRLLEQERWRVAAEKSKAESAQRTLEEQRKIM 347
Cdd:pfam17380 549 -------EERRRIQEQMRKATEERSRLEAMEREREMMRQIV 582
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
49-557 |
1.79e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 41.75 E-value: 1.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 49 ESMMQSLLPGSGFQKQLLAAQGQLQSSTAQLQVELLQSQTKLSELEAQVRKLELERSQHRMLLESLQQRHQADLELIEDA 128
Cdd:pfam12128 251 NTLESAELRLSHLHFGYKSDETLIASRQEERQETSAELNQLLRTLDDQWKEKRDELNGELSAADAAVAKDRSELEALEDQ 330
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 129 HRSHVKVLETSYQQREEQL---RREKEVLSAQHASYcqeaERARTELVAQHQRQMAMAEQEKDQEVARLRELQQASILEM 205
Cdd:pfam12128 331 HGAFLDADIETAAADQEQLpswQSELENLEERLKAL----TGKHQDVTAKYNRRRSKIKEQNNRDIAGIKDKLAKIREAR 406
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 206 RKDHEHQLQRLKMLKDQEIDavtsatSHTRSLNGIIEQMEKFSSSLNTLSSRVEAshVTTSQERELGIRQQDEQLRALQE 285
Cdd:pfam12128 407 DRQLAVAEDDLQALESELRE------QLEAGKLEFNEEEYRLKSRLGELKLRLNQ--ATATPELLLQLENFDERIERARE 478
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 286 RLGRQQRdmeeERSRLQEVIGKMEVRLSEQSRLLEQERWRVAAEKSKAESAQRTLEEQRKIMVQ----QVAMEREELER- 360
Cdd:pfam12128 479 EQEAANA----EVERLQSELRQARKRRDQASEALRQASRRLEERQSALDELELQLFPQAGTLLHflrkEAPDWEQSIGKv 554
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 361 AKSALL----------EEQKSVMNKCGEERRRLAA----EWAeFFTQQKLSKERAEREAERAMHADTQRESTIISLTKEQ 426
Cdd:pfam12128 555 ISPELLhrtdldpevwDGSVGGELNLYGVKLDLKRidvpEWA-ASEEELRERLDKAEEALQSAREKQAAAEEQLVQANGE 633
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 427 AELTVRACELRAKEEKliAEREALERERQELRLEKDRLHKASLRLQARAQE----VEHMSKVASKKYEEGEQALQE-ARQ 501
Cdd:pfam12128 634 LEKASREETFARTALK--NARLDLRRLFDEKQSEKDKKNKALAERKDSANErlnsLEAQLKQLDKKHQAWLEEQKEqKRE 711
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*..
gi 197246877 502 MQTEQQGRLQVVqrqQEWLRQQEQRVHQEHLSL-AQQRLQLDRVRQEAPSSLPGLPP 557
Cdd:pfam12128 712 ARTEKQAYWQVV---EGALDAQLALLKAAIAARrSGAKAELKALETWYKRDLASLGV 765
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
63-260 |
2.48e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.52 E-value: 2.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 63 KQLLAAQGQLQSSTAQLQVELLQSQTKLSELEAQVRKLELERSQHRMLLESLQQRHQADLELIEDAHRSHVKVLETSYqq 142
Cdd:COG4942 37 AELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAELLRALY-- 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 143 REEQLRREKEVLSAQHASycqEAERARTEL--VAQHQRQMAMAEQEKDQEVARLREL---QQASILEMRKDHEHQLQRLK 217
Cdd:COG4942 115 RLGRQPPLALLLSPEDFL---DAVRRLQYLkyLAPARREQAEELRADLAELAALRAEleaERAELEALLAELEEERAALE 191
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 197246877 218 MLKDQEIDAVTSATSHTRSLNGIIEQMEKFSSSLNTLSSRVEA 260
Cdd:COG4942 192 ALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEA 234
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
273-371 |
3.07e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 40.53 E-value: 3.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 273 IRQQDEQLRALQERLGRQQRDMEEERSRLQEVIGKMEVRLSEQSRLLEQERWRVAAEKSKAESAQRTLEEQRKIMVQQVA 352
Cdd:PRK12704 59 LLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIE 138
|
90 100
....*....|....*....|....*..
gi 197246877 353 MEREELER--------AKSALLEEQKS 371
Cdd:PRK12704 139 EQLQELERisgltaeeAKEILLEKVEE 165
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
62-216 |
3.18e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 40.77 E-value: 3.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 62 QKQLLAAQGQL-----QSSTAQLQVELLQSQTKLSELEAQVRKLELERSQHRMLLESLQQRHQADLELIEDAHRS-HVKV 135
Cdd:COG3206 188 RKELEEAEAALeefrqKNGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPELLQSpVIQQ 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 136 LETSYQQREEQLRREKEVLSAQHASYcQEAERARTELVAQHQRQMAMAEQEKDQEVARLRElQQASILEMRKDHEHQLQR 215
Cdd:COG3206 268 LRAQLAELEAELAELSARYTPNHPDV-IALRAQIAALRAQLQQEAQRILASLEAELEALQA-REASLQAQLAQLEARLAE 345
|
.
gi 197246877 216 L 216
Cdd:COG3206 346 L 346
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
62-458 |
3.44e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 40.69 E-value: 3.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 62 QKQLLAAQGQLQSSTAQLQVELLQSQTKLSELEAQVRKLELERSQHRMLLESLQQRHQADLELIEDAHRSHVKVLETSYQ 141
Cdd:COG1196 395 AAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAAL 474
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 142 QREEQLRREKEVLSAQHASYCQEAERARTELVAQHQRQMAMAEQ--------------EKDQEVARLRELQQASILEMRK 207
Cdd:COG1196 475 LEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGlrglagavavligvEAAYEAALEAALAAALQNIVVE 554
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 208 DHEHQLQRLKMLKDQEIDAVTSATSHTRSLngiieqmEKFSSSLNTLSSRVEASHVTTSQERELGIRQQDEQLRALQERL 287
Cdd:COG1196 555 DDEVAAAAIEYLKAAKAGRATFLPLDKIRA-------RAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTL 627
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 288 GRQQRDMEEERS-----RLQEVIGKMEVRLSEQSRLLEQERWRVAAEKSKAESAQRTLEEQRK--IMVQQVAMEREELER 360
Cdd:COG1196 628 VAARLEAALRRAvtlagRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEeeLELEEALLAEEEEER 707
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 361 AKSALLEEQKSVMNKCGEERRRLAAEWAEFFTQQKLSKERAEREAERAMHADTQR---ESTIISLTKEQAEL-TV--RAC 434
Cdd:COG1196 708 ELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLeelERELERLEREIEALgPVnlLAI 787
|
410 420
....*....|....*....|....*...
gi 197246877 435 E----LRAKEEKLIAEREALERERQELR 458
Cdd:COG1196 788 EeyeeLEERYDFLSEQREDLEEARETLE 815
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
204-470 |
3.97e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.13 E-value: 3.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 204 EMRKDHEHQLQRLKmlkdQEIDAVTSATSHTRS-LNGIIEQMEKFSSSLNTLSSRVeashvttsQERELGIRQQDEQLRA 282
Cdd:COG4942 20 DAAAEAEAELEQLQ----QEIAELEKELAALKKeEKALLKQLAALERRIAALARRI--------RALEQELAALEAELAE 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 283 LQERLGRQQRDMEEERSRLQEVIGKMEvRLSEQSRLLEQERWRVAAEKSKAESAQRTLEEQRKIMVQQVAMEREELERAK 362
Cdd:COG4942 88 LEKEIAELRAELEAQKEELAELLRALY-RLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALR 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 363 SALLEEQKSVMNKCGEERRRlaaewaefftQQKLSKERaereaeramhadTQRESTIISLTKEQAELTVRACELRAKEEK 442
Cdd:COG4942 167 AELEAERAELEALLAELEEE----------RAALEALK------------AERQKLLARLEKELAELAAELAELQQEAEE 224
|
250 260
....*....|....*....|....*...
gi 197246877 443 LIAEREALERERQELRLEKDRLHKASLR 470
Cdd:COG4942 225 LEALIARLEAEAAAAAERTPAAGFAALK 252
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
92-536 |
4.20e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 40.32 E-value: 4.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 92 ELEAQVRKLELERSQHRMLLESLQQ--RHQADLELIEDAHRSHVKVLETSYQQREEQLRREKEVLSAQHASYCQEAERA- 168
Cdd:COG3096 293 ELFGARRQLAEEQYRLVEMARELEElsARESDLEQDYQAASDHLNLVQTALRQQEKIERYQEDLEELTERLEEQEEVVEe 372
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 169 RTELVAQHQRQMAMAEQEKDQEVARLRELQQAsiLEMRKDHEHQLQrlkmlkdQEIDAVTSAtshtRSLNGiieqmekfs 248
Cdd:COG3096 373 AAEQLAEAEARLEAAEEEVDSLKSQLADYQQA--LDVQQTRAIQYQ-------QAVQALEKA----RALCG--------- 430
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 249 ssLNTLSSRVEASHVTTSQERElgiRQQDEQLRALQERLgrqqRDMEEERSRLQEVIGKMEVRLSEQSRlleQERWRVAA 328
Cdd:COG3096 431 --LPDLTPENAEDYLAAFRAKE---QQATEEVLELEQKL----SVADAARRQFEKAYELVCKIAGEVER---SQAWQTAR 498
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 329 EKSKAESAQRTLEEQrkimVQQVAMEREELERaksaLLEEQKSVmnkcgeerRRLAAEWAefftqQKLSKERAEREAERA 408
Cdd:COG3096 499 ELLRRYRSQQALAQR----LQQLRAQLAELEQ----RLRQQQNA--------ERLLEEFC-----QRIGQQLDAAEELEE 557
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 409 MHAdtQRESTIISLTKEQAELTVRACELRAkeekliaEREALERERQELRLEKDRLHKASLRLQA-RAQEVEHMskvask 487
Cdd:COG3096 558 LLA--ELEAQLEELEEQAAEAVEQRSELRQ-------QLEQLRARIKELAARAPAWLAAQDALERlREQSGEAL------ 622
|
410 420 430 440
....*....|....*....|....*....|....*....|....*....
gi 197246877 488 kyeEGEQALQEARQMQTEqqgRLQVVQRQQEWLRQQEQRVHQEHLSLAQ 536
Cdd:COG3096 623 ---ADSQEVTAAMQQLLE---REREATVERDELAARKQALESQIERLSQ 665
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
290-518 |
4.33e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 39.75 E-value: 4.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 290 QQRDMEEERSRLQEVIGKMEvRLSEQSRLLEQERWRVAAEKSKAESAQRTLEEQRKIMVQQVAMEREELERAKSALLEEQ 369
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIA-ELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 370 KSVMNKCGEERRRLAAewaefftqqkLSKERAEREAERAMHAD--TQRESTIISLTKEQAELTVRACELRAKEEKLIAER 447
Cdd:COG4942 97 AELEAQKEELAELLRA----------LYRLGRQPPLALLLSPEdfLDAVRRLQYLKYLAPARREQAEELRADLAELAALR 166
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 197246877 448 EALERERQELRLEKDRLHKASLRLQARAQEVEHMSKVASKKYEEGEQALQEARQMQTEQQGRLQVVQRQQE 518
Cdd:COG4942 167 AELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAA 237
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
71-340 |
4.38e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 40.32 E-value: 4.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 71 QLQSSTAQLQVELLQSQTKLSELEAQVRKLELERSQHRMLLESLQQRHQADLELIEDAHRShVKVLET---SYQQREEQL 147
Cdd:COG3096 344 RQQEKIERYQEDLEELTERLEEQEEVVEEAAEQLAEAEARLEAAEEEVDSLKSQLADYQQA-LDVQQTraiQYQQAVQAL 422
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 148 RREKEV-----LSAQHASYCQEAERAR----TELVAQHQRQMAMAEQEKDQ-------------EVARLRELQQA-SILE 204
Cdd:COG3096 423 EKARALcglpdLTPENAEDYLAAFRAKeqqaTEEVLELEQKLSVADAARRQfekayelvckiagEVERSQAWQTArELLR 502
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 205 MRKDHEHQLQRLKMLK----------DQEIDAVTSATSHTRSLNGIIEQMEKFSSSLNTLSSRVE--ASHVTTSQERELG 272
Cdd:COG3096 503 RYRSQQALAQRLQQLRaqlaeleqrlRQQQNAERLLEEFCQRIGQQLDAAEELEELLAELEAQLEelEEQAAEAVEQRSE 582
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 273 IRQQDEQLRA--------------LQERLGRQQRDMEEERSRLQEVIGKMEvRLSEQSRLLEQERWRVAAEKSKAESAQR 338
Cdd:COG3096 583 LRQQLEQLRArikelaarapawlaAQDALERLREQSGEALADSQEVTAAMQ-QLLEREREATVERDELAARKQALESQIE 661
|
..
gi 197246877 339 TL 340
Cdd:COG3096 662 RL 663
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
210-467 |
4.65e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 40.05 E-value: 4.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 210 EHQLQRLKMLKDQEIDAVTSATSHTRS-LNGIIEQMEKFSSSLNTLSSRVEAshvTTSQERELGIRQQDeqLRALQERLG 288
Cdd:PRK03918 188 TENIEELIKEKEKELEEVLREINEISSeLPELREELEKLEKEVKELEELKEE---IEELEKELESLEGS--KRKLEEKIR 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 289 RQQRDMEEERSRLQEVigKMEVRLSEQSRLLEQERWRVAAEKSKAESAQRTLEEQRKIMVQQVAMEREELERaksalLEE 368
Cdd:PRK03918 263 ELEERIEELKKEIEEL--EEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKE-----LEE 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 369 QKSVMNKCGEERRRLAAEWAEFFTQQKLSKERAEREAERAMHADTQRESTIISLTKEQAELTVRACELRAKEEKLIAERE 448
Cdd:PRK03918 336 KEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIG 415
|
250
....*....|....*....
gi 197246877 449 ALERERQELRLEKDRLHKA 467
Cdd:PRK03918 416 ELKKEIKELKKAIEELKKA 434
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
260-475 |
5.33e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 39.36 E-value: 5.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 260 ASHVTTSQEREL-GIRQQDEQLRALQERLGRQQRDMEEERSRLQEVIGKMEVRLSEQSRLLEQERWRVAAEKSKAESAQR 338
Cdd:COG4942 18 QADAAAEAEAELeQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 339 TLEEQRKIMVQQVAMEREELERAKSALLEEQKSV---------MNKCGEERRRLAAEWAEFFTQQKLSKERAEREAERAM 409
Cdd:COG4942 98 ELEAQKEELAELLRALYRLGRQPPLALLLSPEDFldavrrlqyLKYLAPARREQAEELRADLAELAALRAELEAERAELE 177
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 197246877 410 HADTQRESTIISLTKEQAELTVRACELRAKEEKLIAEREALERERQELRLEKDRLHKASLRLQARA 475
Cdd:COG4942 178 ALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERT 243
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
145-547 |
5.51e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 39.75 E-value: 5.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 145 EQLRREKEVLSAQHASYCQEAERartelvaQHQRQMAMAEQEKDQEVARlRELQQASILEMRKDHEHQLQRLKMLKDQEI 224
Cdd:COG4717 74 KELEEELKEAEEKEEEYAELQEE-------LEELEEELEELEAELEELR-EELEKLEKLLQLLPLYQELEALEAELAELP 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 225 DAVTSATSHTRSLNGIIEQMEKFSSSLNTLSSRVEASHVTTSQERELGIRQQDEQLRALQERLGRQQRDMEEERSRLQEV 304
Cdd:COG4717 146 ERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEEL 225
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 305 IGKMEVRLSEQSRLLEQERWR--------------VAAEKSKAESAQRTLEEQRKIMVQQVAMEREELERAKSALLEEQK 370
Cdd:COG4717 226 EEELEQLENELEAAALEERLKearlllliaaallaLLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAE 305
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 371 SVMNKCGEERRRlAAEWAEFFTQQKLSKERAEREAERAMHADTQRESTIISLTKEQAELTVRACELRAKE------EKLI 444
Cdd:COG4717 306 ELQALPALEELE-EEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAAllaeagVEDE 384
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 445 AEREALERERQELRLEKDRLHKASLRLQARAQEVEHMSKVASKkyEEGEQALQEARQMQTEQQGRLQVVQRQQEWLRQQE 524
Cdd:COG4717 385 EELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDE--EELEEELEELEEELEELEEELEELREELAELEAEL 462
|
410 420
....*....|....*....|...
gi 197246877 525 QRVHQEHlSLAQQRLQLDRVRQE 547
Cdd:COG4717 463 EQLEEDG-ELAELLQELEELKAE 484
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
63-552 |
6.31e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 39.95 E-value: 6.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 63 KQLLAAQGQLQSSTAQLQVEL------LQSQTKLSELEAQVRKLELERSQHRMLLESLQQRHQADLELIEDAHRSHVKvl 136
Cdd:TIGR00618 229 KHLREALQQTQQSHAYLTQKReaqeeqLKKQQLLKQLRARIEELRAQEAVLEETQERINRARKAAPLAAHIKAVTQIE-- 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 137 etsyQQREEQLRREKEvlsaqhasycQEAERARtelvAQHQRQMAMAEQEKDQEVARLRELQQASILEMRKDHEHQLQRL 216
Cdd:TIGR00618 307 ----QQAQRIHTELQS----------KMRSRAK----LLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIR 368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 217 KMLKDQeidavTSATSHTRSLNGIIEQMEKFSSSLNTLSSRVEASHVTtsqerelgIRQQDEQLRALQERLGRQQRDMEE 296
Cdd:TIGR00618 369 EISCQQ-----HTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQAT--------IDTRTSAFRDLQGQLAHAKKQQEL 435
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 297 ErsrlQEVIGKMEVRLSEQSRLLEQERwRVAAEKSKAESAQRTLEEQRKIMVQQVAMEREELERAKSALLEEQKSVMNKC 376
Cdd:TIGR00618 436 Q----QRYAELCAAAITCTAQCEKLEK-IHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSC 510
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 377 GEERRRLAAEWAEFFTQQKLSKERAEREAERAMHADTQREstIISLTKEQAELTVRACELRAKEEKLIAEREALERERQE 456
Cdd:TIGR00618 511 IHPNPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQ--LTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPN 588
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 457 LRLEKDRLHK---ASLRLQARAQEVEHMSKVASKKYEEGEQALQEARQMQTEQQGRLQVVQRQQEWLRQQEQRVHQehLS 533
Cdd:TIGR00618 589 LQNITVRLQDlteKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHA--LS 666
|
490
....*....|....*....
gi 197246877 534 LAQQRLQLDRVRQEAPSSL 552
Cdd:TIGR00618 667 IRVLPKELLASRQLALQKM 685
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
67-543 |
6.59e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 39.72 E-value: 6.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 67 AAQGQLQSSTAQLQVELLQSQTK---------LSELEAQVRKLELE-RSQHRMLLESLQQRHQ----ADLELIE-----D 127
Cdd:pfam15921 287 ASSARSQANSIQSQLEIIQEQARnqnsmymrqLSDLESTVSQLRSElREAKRMYEDKIEELEKqlvlANSELTEarterD 366
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 128 AHRSHVKVLETSYQQREEQL-RREKEV-LSAQHASYCQEAERARTELVAQHQRQMamaeQEKDQEVARLRELQQASILEM 205
Cdd:pfam15921 367 QFSQESGNLDDQLQKLLADLhKREKELsLEKEQNKRLWDRDTGNSITIDHLRREL----DDRNMEVQRLEALLKAMKSEC 442
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 206 RKDHEHQLQRLKMlKDQEIDAVTSATSHTRSLNGIIEQ-MEKFSSSLNTL-SSRVEASHVTTS-QERELGIRQQDEQLRA 282
Cdd:pfam15921 443 QGQMERQMAAIQG-KNESLEKVSSLTAQLESTKEMLRKvVEELTAKKMTLeSSERTVSDLTASlQEKERAIEATNAEITK 521
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 283 LQERLGRQQRDM------EEERSRLQEVIGKMEVRLSEQSRLLEQERWRVAAEKSKAESAQRTleeQRKIMVQQVAMERE 356
Cdd:pfam15921 522 LRSRVDLKLQELqhlkneGDHLRNVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRT---AGAMQVEKAQLEKE 598
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 357 ELERAKSalLEEQKSVMNKCGEERRRLAAEWAEFftqqklskeraEREAERAMHADTQRESTIISLTKEQAELTVRACEL 436
Cdd:pfam15921 599 INDRRLE--LQEFKILKDKKDAKIRELEARVSDL-----------ELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTS 665
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 437 RAKEEKLIAEREALERE-RQELRLEKDRLHKASLRLQARAQEVEHMSKVASKKYEEGEQALQEARQMQ---TEQQGRLQV 512
Cdd:pfam15921 666 RNELNSLSEDYEVLKRNfRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQkqiTAKRGQIDA 745
|
490 500 510
....*....|....*....|....*....|.
gi 197246877 513 VQRQQEWLRQQEQRVHQEHLSLAQQRLQLDR 543
Cdd:pfam15921 746 LQSKIQFLEEAMTNANKEKHFLKEEKNKLSQ 776
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
422-543 |
9.96e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 39.13 E-value: 9.96e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197246877 422 LTKEQAELTVRACELRAKEEKLIAER--------EALERERQELRLEKDRLHKASLRLQARAQEVEHMSKVASKKYEEGE 493
Cdd:COG4913 307 LEAELERLEARLDALREELDELEAQIrgnggdrlEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALR 386
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 197246877 494 QALQEARQMQTEQQGRLQVVQ----RQQEWLRQQEQRVHQEHLSLAQQRLQLDR 543
Cdd:COG4913 387 AEAAALLEALEEELEALEEALaeaeAALRDLRRELRELEAEIASLERRKSNIPA 440
|
|
| |
