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Conserved domains on  [gi|15987670|gb|AAL12080|]
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NADH dehydrogenase subunit 1, partial (mitochondrion) [Myotis alcathoe]

Protein Classification

complex I subunit 1 family protein( domain architecture ID 103)

complex I subunit 1 family protein similar to NADH dehydrogenase subunit 1, which is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

EC:  7.1.1.-
Gene Ontology:  GO:0016655|GO:0016020
PubMed:  23417064|24059520
SCOP:  4005664

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK06076 super family cl00469
NADH-quinone oxidoreductase subunit NuoH;
1-267 3.68e-171

NADH-quinone oxidoreductase subunit NuoH;


The actual alignment was detected with superfamily member MTH00104:

Pssm-ID: 469782  Cd Length: 318  Bit Score: 474.88  E-value: 3.68e-171
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15987670    1 MYFINLLTMIIPILLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADAVKLFTKEPMQPLTSSLTLFIIAPTLALT 80
Cdd:MTH00104   1 MFMINILLLIIPILLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLRPLTSSTTMFIIAPILALT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15987670   81 LALMMWIPLPMPHPLINMNLSMLFMLALSSLAVYAILWSGWASNSKYALIGALRAVAQTISYEVTLAIIILSILLMNGSF 160
Cdd:MTH00104  81 LALTMWIPLPMPYPLINMNLGVLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSF 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15987670  161 TLTTLITTQEYIWLIIPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANIIMMNALTII 240
Cdd:MTH00104 161 TLSTLITTQEHLWLIFPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYANIIMMNALTTI 240

                        250       260
                 ....*....|....*....|....*..
gi 15987670  241 LFLGAYNNPIFSELYTTNFAIKTLLFT 267
Cdd:MTH00104 241 LFLGAFHNPYMPELYTTNFTIKTLLLT 267
 
Name Accession Description Interval E-value
ND1 MTH00104
NADH dehydrogenase subunit 1; Provisional
 1-267 3.68e-171

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177166  Cd Length: 318  Bit Score: 474.88  E-value: 3.68e-171
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15987670    1 MYFINLLTMIIPILLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADAVKLFTKEPMQPLTSSLTLFIIAPTLALT 80
Cdd:MTH00104   1 MFMINILLLIIPILLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLRPLTSSTTMFIIAPILALT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15987670   81 LALMMWIPLPMPHPLINMNLSMLFMLALSSLAVYAILWSGWASNSKYALIGALRAVAQTISYEVTLAIIILSILLMNGSF 160
Cdd:MTH00104  81 LALTMWIPLPMPYPLINMNLGVLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSF 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15987670  161 TLTTLITTQEYIWLIIPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANIIMMNALTII 240
Cdd:MTH00104 161 TLSTLITTQEHLWLIFPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYANIIMMNALTTI 240

                        250       260
                 ....*....|....*....|....*..
gi 15987670  241 LFLGAYNNPIFSELYTTNFAIKTLLFT 267
Cdd:MTH00104 241 LFLGAFHNPYMPELYTTNFTIKTLLLT 267
NADHdh pfam00146
NADH dehydrogenase;
6-266 6.11e-100

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 294.00  E-value: 6.11e-100
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15987670     6 LLTMIIPILLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADAVKLFTKEPMQPLTSSLTLFIIAPTLALTLALMM 85
Cdd:pfam00146   2 ILLLLVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLA 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15987670    86 WIPLPMPHPLI--NMNLSMLFMLALSSLAVYAILWSGWASNSKYALIGALRAVAQTISYEVTLAIIILSILLMNGSFTLT 163
Cdd:pfam00146  82 FAVIPFGPGLVlaDLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSLS 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15987670   164 TLITTQEYIWLIIPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANIIMMNALTIILFL 243
Cdd:pfam00146 162 EIVEAQAGGWFIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLFL 241

                         250       260
                  ....*....|....*....|...
gi 15987670   244 GAYNNPIFSeLYTTNFAIKTLLF 266
Cdd:pfam00146 242 GGWLGPFPL-PGLLWFLLKVFFV 263
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 1-266 2.59e-90

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 270.46  E-value: 2.59e-90
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15987670   1 MYFINLLTMIIPILLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADAVKLFTKEPMQPLTSSLTLFIIAPTLALT 80
Cdd:COG1005  10 ITLIKALVILVFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAPILAFI 89

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15987670  81 LALMMWIPLPM--PHPLINMNLSMLFMLALSSLAVYAILWSGWASNSKYALIGALRAVAQTISYEVTLAIIILSILLMNG 158
Cdd:COG1005  90 PALLAFAVIPFgpGLVLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLLGVVLLAG 169

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15987670 159 SFTLTTLITTQE-YIWLIIPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANIIMMNAL 237
Cdd:COG1005 170 SLNLSEIVEAQAgGLWFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYANMFLVSAL 249

                       250       260       270
                ....*....|....*....|....*....|....
gi 15987670 238 TIILFLGAYNNPIFSELYTT-----NFAIKTLLF 266
Cdd:COG1005 250 ATTLFLGGWLGPFPILPLGGlpgilWFLLKTLFF 283
 
Name Accession Description Interval E-value
ND1 MTH00104
NADH dehydrogenase subunit 1; Provisional
 1-267 3.68e-171

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177166  Cd Length: 318  Bit Score: 474.88  E-value: 3.68e-171
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15987670    1 MYFINLLTMIIPILLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADAVKLFTKEPMQPLTSSLTLFIIAPTLALT 80
Cdd:MTH00104   1 MFMINILLLIIPILLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLRPLTSSTTMFIIAPILALT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15987670   81 LALMMWIPLPMPHPLINMNLSMLFMLALSSLAVYAILWSGWASNSKYALIGALRAVAQTISYEVTLAIIILSILLMNGSF 160
Cdd:MTH00104  81 LALTMWIPLPMPYPLINMNLGVLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSF 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15987670  161 TLTTLITTQEYIWLIIPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANIIMMNALTII 240
Cdd:MTH00104 161 TLSTLITTQEHLWLIFPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYANIIMMNALTTI 240

                        250       260
                 ....*....|....*....|....*..
gi 15987670  241 LFLGAYNNPIFSELYTTNFAIKTLLFT 267
Cdd:MTH00104 241 LFLGAFHNPYMPELYTTNFTIKTLLLT 267
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
 1-267 1.15e-157

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214422  Cd Length: 323  Bit Score: 440.87  E-value: 1.15e-157
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15987670    1 MYFINLLTMIIPILLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADAVKLFTKEPMQPLTSSLTLFIIAPTLALT 80
Cdd:MTH00111   6 LNLINPLLYIIPILIAVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPIRPSTSSPILFTLTPILALL 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15987670   81 LALMMWIPLPMPHPLINMNLSMLFMLALSSLAVYAILWSGWASNSKYALIGALRAVAQTISYEVTLAIIILSILLMNGSF 160
Cdd:MTH00111  86 LALTIWTPLPMPFPLADLNLGLLFLLAMSSMAVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLILLSGGY 165

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15987670  161 TLTTLITTQEYIWLIIPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANIIMMNALTII 240
Cdd:MTH00111 166 TLQTLATTQEPLWLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILLMNTLTTI 245

                        250       260
                 ....*....|....*....|....*..
gi 15987670  241 LFLGAYNNPIFSELYTTNFAIKTLLFT 267
Cdd:MTH00111 246 LFLNPSTLNLPPELFTINLMTKTLLLT 272
ND1 MTH00071
NADH dehydrogenase subunit 1; Provisional
 1-267 4.49e-154

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214418  Cd Length: 322  Bit Score: 432.12  E-value: 4.49e-154
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15987670    1 MYFINLLTMIIPILLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADAVKLFTKEPMQPLTSSLTLFIIAPTLALT 80
Cdd:MTH00071   6 SLIINPLLYIIPVLLAVAFLTLVERKVLGYMQLRKGPNIVGPMGLLQPIADGLKLFIKEPIRPSTSSQILFILMPTMALT 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15987670   81 LALMMWIPLPMPHPLINMNLSMLFMLALSSLAVYAILWSGWASNSKYALIGALRAVAQTISYEVTLAIIILSILLMNGSF 160
Cdd:MTH00071  86 LALIIWTPLPMPNNLSNLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVTLGLILLCLILLTGGF 165

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15987670  161 TLTTLITTQEYIWLIIPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANIIMMNALTII 240
Cdd:MTH00071 166 SLMNFNTTQEFMWLIIPAWPMAAMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILMMNTLSTI 245

                        250       260
                 ....*....|....*....|....*..
gi 15987670  241 LFLGAYNNPIFSELYTTNFAIKTLLFT 267
Cdd:MTH00071 246 LFLGSTYNHLQPELSTMNLMIKASILS 272
ND1 MTH00134
NADH dehydrogenase subunit 1; Provisional
 1-265 8.27e-152

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177192  Cd Length: 324  Bit Score: 426.33  E-value: 8.27e-152
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15987670    1 MYFINLLTMIIPILLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADAVKLFTKEPMQPLTSSLTLFIIAPTLALT 80
Cdd:MTH00134   7 THIINPLAYIVPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLATPMLALT 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15987670   81 LALMMWIPLPMPHPLINMNLSMLFMLALSSLAVYAILWSGWASNSKYALIGALRAVAQTISYEVTLAIIILSILLMNGSF 160
Cdd:MTH00134  87 LALTLWAPMPMPYPVTDLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLSVIIFTGGF 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15987670  161 TLTTLITTQEYIWLIIPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANIIMMNALTII 240
Cdd:MTH00134 167 TLQTFNTAQESIWLLLPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTLSAI 246

                        250       260
                 ....*....|....*....|....*
gi 15987670  241 LFLGAYNNPIFSELYTTNFAIKTLL 265
Cdd:MTH00134 247 LFLGASHIPTLPELTTINLMTKAAL 271
ND1 MTH00218
NADH dehydrogenase subunit 1; Provisional
 2-257 3.45e-126

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214463  Cd Length: 311  Bit Score: 360.76  E-value: 3.45e-126
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15987670    2 YFINLLTMIIPILLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADAVKLFTKEPMQPLTSSLTLFIIAPTLALTL 81
Cdd:MTH00218   4 SLINLLLYILPVLLAVAFLTLLERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIKEPIRPSTSSPFLFLLAPILALTL 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15987670   82 ALMMWIPLPMPHPLINMNLSMLFMLALSSLAVYAILWSGWASNSKYALIGALRAVAQTISYEVTLAIIILSILLMNGSFT 161
Cdd:MTH00218  84 ALLLWMPLPLPFSLINLNLGVLFILAISSLGVYSILWSGWASNSKYALMGALRAVAQTISYEVSLGLIILSLIILTGGFS 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15987670  162 LTTLITTQEYIWLIIPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANIIMMNALTIIL 241
Cdd:MTH00218 164 LEGFNLTQETIWLLIPEWPLALMWFISTLAETNRAPFDLTEGESELVSGFNVEYSGGPFALFFLAEYMNILFMNTLSVIL 243

                        250
                 ....*....|....*.
gi 15987670  242 FLGAYNNPIFSELYTT 257
Cdd:MTH00218 244 FLGTSLTTINLMLKAT 259
ND1 MTH00040
NADH dehydrogenase subunit 1; Validated
 1-265 5.29e-121

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 214409  Cd Length: 323  Bit Score: 348.12  E-value: 5.29e-121
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15987670    1 MYFINLLTMIIPILLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADAVKLFTKEPMQPLTSSLTLFIIAPTLALT 80
Cdd:MTH00040   5 LFLINLLSFIVPVLLAVAFLTLVERKVLGYMQFRKGPNVVGPYGLLQPFADGLKLFIKETLKPSNASPYLFFFSPVLFLF 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15987670   81 LALMMWIPLPMPHPLINMNLSMLFMLALSSLAVYAILWSGWASNSKYALIGALRAVAQTISYEVTLAIIILSILLMNGSF 160
Cdd:MTH00040  85 LALLLWSLIPVPTPTLNVNLSLLLVLGLSSLSVYALLGSGWASNSKYSLLGAIRAVAQTISYEISLGLILLSLVIFSGSF 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15987670  161 TLTTLITTQEYIWLIIPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANIIMMNALTII 240
Cdd:MTH00040 165 SLSSISNSQNGSWLLFPCLPLFYIWFISTLAETNRAPFDLTEGESELVSGYNVEYAGGPFALFFIAEYANIIFMNLLSVI 244

                        250       260
                 ....*....|....*....|....*...
gi 15987670  241 LFLGAyNNPiFSELYTTN---FAIKTLL 265
Cdd:MTH00040 245 LFLGG-GSP-FNEIFPINiiiVGIKTTF 270
ND1 MTH00193
NADH dehydrogenase subunit 1; Provisional
 1-251 1.59e-101

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177241  Cd Length: 306  Bit Score: 298.22  E-value: 1.59e-101
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15987670    1 MYFINLLTMIIPILLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADAVKLFTKEPMQPLTSSLTLFIIAPTLALT 80
Cdd:MTH00193   3 MMLINFLLLIICVLVSVAFLTLLERKVLGYIQIRKGPNKVGFMGILQPFSDAIKLFTKEQTYPLMSNYLLYYFSPVFSLF 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15987670   81 LALMMWIPLPMPHPLINMNLSMLFMLALSSLAVYAILWSGWASNSKYALIGALRAVAQTISYEVTLAIIILSILLMNGSF 160
Cdd:MTH00193  83 LSLLIWLIYPYLFNLISFNLGILFFLCCSSLGVYTVMIAGWSSNSKYSLLGSLRSVAQTISYEVSLALILLSFIFLIGSF 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15987670  161 TLTTLITTQEYIWLIIPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANIIMMNALTII 240
Cdd:MTH00193 163 NLLDFMNYQKYIWFIFFSFPLFLIWFVSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYSSILFMSMLFVL 242

                        250
                 ....*....|.
gi 15987670  241 LFLGAYNNPIF 251
Cdd:MTH00193 243 MFLGGDLLSLL 253
ND1 MTH00195
NADH dehydrogenase subunit 1; Provisional
 1-251 1.88e-101

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214452  Cd Length: 307  Bit Score: 298.19  E-value: 1.88e-101
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15987670    1 MYFINLLTMIIPILLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADAVKLFTKEPMQPLTSSLTLFIIAPTLALT 80
Cdd:MTH00195   3 ISVIHFLIQIVPVLLAVAFFTLLERKILGYIQLRKGPNKVGPYGLLQPIADAVKLFIKEPVKPSTSSLWLFFFAPVLALA 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15987670   81 LALMMWIPLPMPHPLINMNLSMLFMLALSSLAVYAILWSGWASNSKYALIGALRAVAQTISYEVTLAIIILSILLMNGSF 160
Cdd:MTH00195  83 LALILWVPIPSPFGFSSINLSVLFFLCVSSLSVYSILGSGWASNSKYALLGAIRAVAQTISYEVSMGLIILCPICLAGSF 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15987670  161 TLTTLITTQEYIWLIIPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANIIMMNALTII 240
Cdd:MTH00195 163 DFTIMVISQGFSWVILLCPPISFMWYVSTLAETNRAPFDFAEGESELVSGFNVEYAGGPFALIFMAEYSNIIFMSVLTTI 242

                        250
                 ....*....|.
gi 15987670  241 LFLGAYNNPIF 251
Cdd:MTH00195 243 LFLGGGGTIIV 253
ND1 MTH00143
NADH dehydrogenase subunit 1; Provisional
 13-266 2.98e-100

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177201  Cd Length: 307  Bit Score: 294.86  E-value: 2.98e-100
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15987670   13 ILLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADAVKLFTKEPMQPLTSSLTLFIIAPTLALTLALMMWIPLPMP 92
Cdd:MTH00143  14 VLLAVAFFTLLERKGLGYFQIRKGPNKVGLMGLPQPLADAVKLFTKEFVKPTMSNKFPFFLAPCLSLILALLLWQLYPSY 93

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15987670   93 HPLINMNLSMLFMLALSSLAVYAILWSGWASNSKYALIGALRAVAQTISYEVTLAIIILSILLMNGSFTLTTLITTQEYI 172
Cdd:MTH00143  94 FSSSYFGWGLLFFLCVSSLNVYGVLLAGWSSNSKYALLGAVRAVAQTISYEVSMSLILLFPLFLSGSFSFIEISESQFSV 173

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15987670  173 WLIIPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANIIMMNALTIILFLGayNNPIFS 252
Cdd:MTH00143 174 WLGFLMFPVFLMWFVSCLAETNRAPFDFAEGESELVSGFNVEYGGGGFALLFLAEYANILFMSLLTVVLFFG--GSSVLF 251

                        250
                 ....*....|....
gi 15987670  253 ELYTTNFAIKTLLF 266
Cdd:MTH00143 252 LLGGVVFMFKVLFF 265
NADHdh pfam00146
NADH dehydrogenase;
6-266 6.11e-100

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 294.00  E-value: 6.11e-100
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15987670     6 LLTMIIPILLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADAVKLFTKEPMQPLTSSLTLFIIAPTLALTLALMM 85
Cdd:pfam00146   2 ILLLLVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLA 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15987670    86 WIPLPMPHPLI--NMNLSMLFMLALSSLAVYAILWSGWASNSKYALIGALRAVAQTISYEVTLAIIILSILLMNGSFTLT 163
Cdd:pfam00146  82 FAVIPFGPGLVlaDLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSLS 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15987670   164 TLITTQEYIWLIIPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANIIMMNALTIILFL 243
Cdd:pfam00146 162 EIVEAQAGGWFIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLFL 241

                         250       260
                  ....*....|....*....|...
gi 15987670   244 GAYNNPIFSeLYTTNFAIKTLLF 266
Cdd:pfam00146 242 GGWLGPFPL-PGLLWFLLKVFFV 263
ND1 MTH00225
NADH dehydrogenase subunit 1; Provisional
 1-267 3.88e-92

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214465  Cd Length: 305  Bit Score: 274.22  E-value: 3.88e-92
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15987670    1 MYFINLLTMIIPILLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADAVKLFTKEPMQPLTSSLTLFIIAPTLALT 80
Cdd:MTH00225   2 SFLLKFLIMLICLLLSVAFYTLLERKVLGYIQLRKGPNKVGLMGLPQPFADALKLFTKEQTKPQLSNKLPYYIAPILSLI 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15987670   81 LALMMWIPLPMPHPLINMNLSMLFMLALSSLAVYAILWSGWASNSKYALIGALRAVAQTISYEVTLAIIILSILLMNGSF 160
Cdd:MTH00225  82 LSLILWSLYPSMFSIYSFKFGILFFLCISSLNVYTILLAGWSSNSKYALLGALRAVAQTISYEVSMALILLSIVFLVLTY 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15987670  161 TLTTLITTQEYIWLIIPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANIIMMNALTII 240
Cdd:MTH00225 162 NLFDFSYNQKYFWFMFVLFPLFFCWMISMLAETNRAPFDFAEGESELVSGFNIEYSSGGFALIFMAEYGSILFMSMLTSI 241

                        250       260
                 ....*....|....*....|....*..
gi 15987670  241 LFLGAYNNPIFSELYttnfaIKTLLFT 267
Cdd:MTH00225 242 LFFGGFFVTIDLFLI-----LKIMLLA 263
ND1 MTH00054
NADH dehydrogenase subunit 1; Provisional
 1-259 6.26e-92

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177127  Cd Length: 324  Bit Score: 274.30  E-value: 6.26e-92
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15987670    1 MYFINLLTMIIPILLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADAVKLFTKEPMQPLTSSLTLFIIAPTLALT 80
Cdd:MTH00054   3 IIIIKILAILVPLLISIAYLTLAERKVLGYIQCRKGPNVVGVYGLLQPLADGLKLFTKEIIIPNHANIFIYIMAPILSLT 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15987670   81 LALMMW--IPLPMPHPLINMNLSMLFMLALSSLAVYAILWSGWASNSKYALIGALRAVAQTISYEVTLAIIILSILLMNG 158
Cdd:MTH00054  83 LAFIAWgvIPYGEGVVLSDLGIGILYLFAVSSISVYAVLMSGWSSNSKYAFLGAIRAAAQMISYEVSIGLIIISVVLCVG 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15987670  159 SFTLTTLITTQEYIWLIIPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANIIMMNALT 238
Cdd:MTH00054 163 SLNLTEIVLAQKNIWFIFPLFPAAIMFFVSALAETNRVPFDLTEGESELVSGFNVEYSSMSFALFFLAEYCHIILMSTFG 242

                        250       260
                 ....*....|....*....|.
gi 15987670  239 IILFLGAYNNPIFSELYTTNF 259
Cdd:MTH00054 243 VILFLGGWLVISGPTSYFSNF 263
ND1 MTH00216
NADH dehydrogenase subunit 1; Provisional
 2-250 6.35e-92

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 164761  Cd Length: 327  Bit Score: 274.69  E-value: 6.35e-92
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15987670    2 YFINLLTMIIPILLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADAVKLFTKEPMQPLTSSLTLFIIAPTLALTL 81
Cdd:MTH00216   8 YLIKILIIIVPLLIAVAYLTLAERKVLGYMQARKGPNVVGVYGLLQPFADGVKLFTKEMVIPHHANLFVYIVAPVLSFTL 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15987670   82 ALMMWIPLPMPHPLI--NMNLSMLFMLALSSLAVYAILWSGWASNSKYALIGALRAVAQTISYEVTLAIIILSILLMNGS 159
Cdd:MTH00216  88 ALIVWGVIPYERGVLisDFKIGILYILAISSISVYAILMSGWGSNSKYAFLGAIRAAAQMISYEVSIGLIIISVLLCVGS 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15987670  160 FTLTTLITTQ-EYIWLIIPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANIIMMNALT 238
Cdd:MTH00216 168 LSITEIVLAQnNGIWFFFPLFPVAIMFFASALAETNRAPFDLTEGESELVSGYNVEYASMSFALFFLAEYAHIILMSCLT 247

                        250
                 ....*....|..
gi 15987670  239 IILFLGAYNNPI 250
Cdd:MTH00216 248 TILFLGGWLSPI 259
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 1-266 2.59e-90

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 270.46  E-value: 2.59e-90
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15987670   1 MYFINLLTMIIPILLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADAVKLFTKEPMQPLTSSLTLFIIAPTLALT 80
Cdd:COG1005  10 ITLIKALVILVFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAPILAFI 89

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15987670  81 LALMMWIPLPM--PHPLINMNLSMLFMLALSSLAVYAILWSGWASNSKYALIGALRAVAQTISYEVTLAIIILSILLMNG 158
Cdd:COG1005  90 PALLAFAVIPFgpGLVLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLLGVVLLAG 169

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15987670 159 SFTLTTLITTQE-YIWLIIPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANIIMMNAL 237
Cdd:COG1005 170 SLNLSEIVEAQAgGLWFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYANMFLVSAL 249

                       250       260       270
                ....*....|....*....|....*....|....
gi 15987670 238 TIILFLGAYNNPIFSELYTT-----NFAIKTLLF 266
Cdd:COG1005 250 ATTLFLGGWLGPFPILPLGGlpgilWFLLKTLFF 283
PRK06076 PRK06076
NADH-quinone oxidoreductase subunit NuoH;
1-266 1.42e-87

NADH-quinone oxidoreductase subunit NuoH;


Pssm-ID: 235692  Cd Length: 322  Bit Score: 263.21  E-value: 1.42e-87
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15987670    1 MYFINLLTMIIPILLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADAVKLFTKEPMQPLTSSLTLFIIAPTLALT 80
Cdd:PRK06076  11 LILLKAVVILVVVLLCVAFLIWFERKVLARMQLRYGPNRVGPFGLLQLVADGIKLLFKEDIIPAGADKVLFLLAPVIAFI 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15987670   81 LALMMWIPLPM-PH-PLINMNLSMLFMLALSSLAVYAILWSGWASNSKYALIGALRAVAQTISYEVTLAIIILSILLMNG 158
Cdd:PRK06076  91 PAFLAWAVIPFgPElVIADLNVGILYILAISSLGVYGVILAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAG 170

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15987670  159 SFTLTTLITTQEYIWLIIPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANIIMMNALT 238
Cdd:PRK06076 171 SLNLSDIVEAQFLSWNIIPQPPAFVVFFIAAVAETNRHPFDLPEAESELVAGYHTEYSGMKFGLFFLGEYINMILVSALI 250

                        250       260       270
                 ....*....|....*....|....*....|.
gi 15987670  239 IILFLGAYNNPIFSELYTTN---FAIKTLLF 266
Cdd:PRK06076 251 TTLFLGGWLPPFPLGGGIPGaiwFVLKVAFF 281
ND1 MTH00029
NADH dehydrogenase subunit 1; Provisional
 4-252 1.16e-76

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177108  Cd Length: 343  Bit Score: 236.07  E-value: 1.16e-76
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15987670    4 INLLTMIIPILLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADAVKLFTKEPMQPLTSSLTLFIIAPTLALTLAL 83
Cdd:MTH00029  11 IKLLIIFVPLLLSVAYLTLAERKVLGLMQNRKGPAIVGPWGLVQPIADGVKLLTKELIIPSQANKFLYYIAPIISFTLAI 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15987670   84 MMWIPLPMPHP--LINMNLSMLFMLALSSLAVYAILWSGWASNSKYALIGALRAVAQTISYEVTLAIIILSILLMNGSFT 161
Cdd:MTH00029  91 LAWAIVTMDQGvfLSDLDVGVLYFLAISSLSVYAILLSGWASNSRYPFLGAIRCAAQMISYEVAIGLIIISVILCVGSLN 170

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15987670  162 LTTLITTQEYIWLIIPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANIIMMNALTIIL 241
Cdd:MTH00029 171 ISEIVISQRSVWLIIPLFPAAIMFMVASLAETARAPFDLTEGESELVSGFNVEYSSLSFALFFLAEYSNIILMSCMMTIF 250

                        250
                 ....*....|.
gi 15987670  242 FLGAYNNPIFS 252
Cdd:MTH00029 251 FLGGWLSPLDG 261
ND1 MTH00010
NADH dehydrogenase subunit 1; Validated
 2-254 2.19e-76

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 164586  Cd Length: 311  Bit Score: 234.29  E-value: 2.19e-76
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15987670    2 YFINLLTMIIPILLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADAVKLFTKEPMQPLTSSLTLFIIAPTLALTL 81
Cdd:MTH00010   5 FFISILLSYVMALLAMAFYTLLERKALGYFQLRKGPNKVGLAGIPQPFADAIKLFTKEQTKPSPANITPFLGAPMMSLIL 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15987670   82 ALMMWIPLPMPHPLINMNLSMLFMLALSSLAVYAILWSGWASNSKYALIGALRAVAQTISYEVTLAIIILSILLMNGSFT 161
Cdd:MTH00010  85 ALLLWSLYPHKHPSFFLKFSILLFLCVSSMNVYTTLGAGWTSNSKYALLGALRSVAQTISYEVSMSLILLSALLILQTFS 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15987670  162 LTTLITTQeYIWLIIPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANIIMMNALTIIL 241
Cdd:MTH00010 165 FSKIIMSQ-YSWILLMIIPLTVSWFITNLAETNRTPFDFAEGESELVSGFNVEYSSGLFALIFMAEYANILIMSLFTSVF 243

                        250
                 ....*....|...
gi 15987670  242 FLGAYNNPIFSEL 254
Cdd:MTH00010 244 FTSFIPSIFISDL 256
ND1 MTH00090
NADH dehydrogenase subunit 1; Provisional
 5-244 1.18e-55

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177153  Cd Length: 284  Bit Score: 180.48  E-value: 1.18e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15987670    5 NLLTMIIPILLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADAVKLFTKEPMQPLTSSLTLFIIAPTLALTLALM 84
Cdd:MTH00090   1 MLLLMMIFILQAIAFITLYERHLLGSSQNRLGPNKVSFMGVLQALLDGVKLLKKEQMLPLNSSDLSFLLVPGVSFVVMYL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15987670   85 MWIPLPMPHPLINMNLSMLFMLALSSLAVYAILWSGWASNSKYALIGALRAVAQTISYEVTLAIIILSILLMNGSFTLtt 164
Cdd:MTH00090  81 EWFVLPYFFDFLSFEYSLLFFLCLIGFSVYTTLISGIVSKSKYGFLGALRASSQSISYEIAFSLYLLSIMLHNNSFSF-- 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15987670  165 liTTQEYIWLIIpswpLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANIIMMNALTIILFLG 244
Cdd:MTH00090 159 --VSSFSLSLFV----IYLPFLIMIIAELNRAPFDFSEGESELVSGYNVEYSSVAFVLLFLSEYGSLIFFSVLTSVLFFK 232
ND1 MTH00058
NADH dehydrogenase subunit 1; Provisional
 2-244 3.12e-46

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177130  Cd Length: 293  Bit Score: 156.24  E-value: 3.12e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15987670    2 YFINLLTMIIPILLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADAVKLFTKEPMQPLTSSLTLFIIAPTLALTL 81
Cdd:MTH00058   3 GLVSGLEGLLIILLLVAFFILGERKILGYIQLRKGPNKVGIVGLLQSFADLLKLVVKFKVYGFQSRSWFSLFGVFLLVLL 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15987670   82 ALMMWIPLPMPHPLINMNLSMLFMLALSSLAVYAILWSGWASNSKYALIGALRAVAQTISYEVTLAIIILSILLMNGSFT 161
Cdd:MTH00058  83 VVFYCFIYGSYYSGSYSSLSLLWFLVVTSFSSYSLLCVGWGSYNKYSLLSSIRSAFGSVSFEACFMCIVIFCGLCYGSYS 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15987670  162 LTTLITTQEYIWLIIPswPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANIIMMNALTIIL 241
Cdd:MTH00058 163 LVDFYYSGWLSVLLFP--LIYILWLVCILCETNRTPFDYGESESELVSGFNTEYSGIYFTCLFACEYLIIFIFSWLGSVL 240


                 ...
gi 15987670  242 FLG 244
Cdd:MTH00058 241 FFG 243
ndhA CHL00032
NADH dehydrogenase subunit 1
 3-258 1.56e-42

NADH dehydrogenase subunit 1


Pssm-ID: 214341  Cd Length: 363  Bit Score: 148.56  E-value: 1.56e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15987670    3 FINLLTMIIPILLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADAVKLFTKEPMQPLTSSLTLFIIAPTLALTLA 82
Cdd:CHL00032  30 LVPILTLVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKEDLLPSRGDIRLFSIGPSIAVISI 109

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15987670   83 LMMWIPLPMPHPLI--NMNLSMLFMLALSSLAVYAILWSGWASNSKYALIGALRAVAQTISYEVTLAIIILSILLMNGSF 160
Cdd:CHL00032 110 LLSYLVIPFGYHLVlaDLSIGVFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLLSNSL 189

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15987670  161 TLTTLITTQ-EY-IWliipSWPL------AMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANII 232
Cdd:CHL00032 190 STVDIVEAQsKYgFW----GWNLwrqpigFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLL 265

                        250       260       270
                 ....*....|....*....|....*....|
gi 15987670  233 MMNALTIILFLGAYNNPI----FSELYTTN 258
Cdd:CHL00032 266 VSSLFVTVLYLGGWNLSIpyifIPELFEIN 295
HyfC COG0650
Formate hydrogenlyase subunit HyfC [Energy production and conversion];
1-244 2.00e-25

Formate hydrogenlyase subunit HyfC [Energy production and conversion];


Pssm-ID: 440415  Cd Length: 303  Bit Score: 101.80  E-value: 2.00e-25
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15987670   1 MYFINLLTMIIPILLAVAFLTLLERKVLGYMQLRKGPnivgpyGLLQPIADAVKLFTKEPMQPLTSSLtLFIIAPTLAL- 79
Cdd:COG0650   2 MLILLALLQLLLALLLAPLLLGIIRKVKARLQGRRGP------PILQPYYDLLKLLRKETVVPETASW-LFRAAPYVALa 74

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15987670  80 -TLALMMWIPLPMPHPLINMNLSMLFMLALSSLAVYAILWSGWASNSKYALIGALRAVAQTISYEVTLAIIILSILLMNG 158
Cdd:COG0650  75 aMLLAALLVPVLTTGPPLSFSGDLIVLVYLLALARFFLALAGLDSGSPFGGIGASREMTLSALAEPPLLLVLFALALLAG 154

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15987670 159 SFTLTTLITTQE---YIWLIIPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANIIMMN 235
Cdd:COG0650 155 STSLSDIVAYQAahgPLLLSPSLLLAAIAFFIVLLAETGRIPFDIPETHLELHEGMLLEYSGRHLALLELAAALKLFVLL 234


                ....*....
gi 15987670 236 ALTIILFLG 244
Cdd:COG0650 235 SLFVNLFLP 243
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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