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Conserved domains on  [gi|23344946|gb|AAN17614|]
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corkscrew phosphatase splice variant B [Drosophila melanogaster]

Protein Classification

dual specificity protein phosphatase family protein; protein tyrosine phosphatase family protein( domain architecture ID 12968579)

dual specificity protein phosphatase family protein such as dual specificity phosphatases, which dephosphorylate phosphotyrosine, phosphoserine, and phosphothreonine residues, as well as tyrosine-specific protein phosphatases| protein tyrosine phosphatase family protein similar to Neisseria meningitidis NMA1982 that displays phosphatase activity

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PTPc-N11_6 cd14544
catalytic domain of tyrosine-protein phosphatase non-receptor type 11 and type 6; ...
 352-748 1.28e-149

catalytic domain of tyrosine-protein phosphatase non-receptor type 11 and type 6; Tyrosine-protein phosphatase non-receptor type 11 (PTPN11) and type 6 (PTPN6) belong to the family of classical tyrosine-specific protein tyrosine phosphatases (PTPs). PTPs (EC 3.1.3.48) catalyze the dephosphorylation of phosphotyrosine peptides. PTPN11 and PTPN6, are also called SH2 domain-containing tyrosine phosphatase 2 (SHP2) and 1 (SHP1), respectively. They contain two tandem SH2 domains: a catalytic PTP domain, and a C-terminal tail with regulatory properties. Although structurally similar, they have different localization and different roles in signal transduction. PTPN11/SHP2 is expressed ubiquitously and plays a positive role in cell signaling, leading to cell activation, while PTPN6/SHP1 expression is restricted mainly to hematopoietic and epithelial cells and functions as a negative regulator of signaling events.


:

Pssm-ID: 350392 [Multi-domain]  Cd Length: 251  Bit Score: 442.29  E-value: 1.28e-149
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 352 NRLKNRYRNILPYDHTRVKLLDVEHSVAGAEYINANYIRLPTDGDLYNMsssseslnssvpscpactaaqtqrncsncql 431
Cdd:cd14544   1 NKGKNRYKNILPFDHTRVILKDRDPNVPGSDYINANYIRNENEGPTTDE------------------------------- 49

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 432 qnktcvqcavksailpysncatcsrksdslskhkrsessassspssgsgsgpgssgtsgvssvngpgtptnltsgtagcl 511
Cdd:cd14544     --------------------------------------------------------------------------------

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 512 vgllkrhsndssgavsismaerererereMFKTYIATQGCLLtqqvNTVTDFWNMVWQENTRVIVMTTKEYERGKEKCAR 591
Cdd:cd14544  50 -----------------------------NAKTYIATQGCLE----NTVSDFWSMVWQENSRVIVMTTKEVERGKNKCVR 96

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 592 YWPDEGRSEQFGHARIQCVSENSTSDYTLREFLVSWRDQ--PARRIFHYHFQVWPDHGVPADPGCVLNFLQDVNTRQSHL 669
Cdd:cd14544  97 YWPDEGMQKQYGPYRVQNVSEHDTTDYTLRELQVSKLDQgdPIREIWHYQYLSWPDHGVPSDPGGVLNFLEDVNQRQESL 176

                       330       340       350       360       370       380       390
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 23344946 670 AQagekPGPICVHCSAGIGRTGTFIVIDMILDQIVRNGLDTEIDIQRTIQMVRSQRSGLVQTEAQYKFVYYAVQHYIQT 748
Cdd:cd14544 177 PH----AGPIVVHCSAGIGRTGTFIVIDMLLDQIKRKGLDCDIDIQKTIQMVRSQRSGMVQTEAQYKFIYVAVAQYIET 251
SH2_C-SH2_SHP_like cd09931
C-terminal Src homology 2 (C-SH2) domain found in SH2 domain Phosphatases (SHP) proteins; The ...
 211-307 2.19e-60

C-terminal Src homology 2 (C-SH2) domain found in SH2 domain Phosphatases (SHP) proteins; The SH2 domain phosphatases (SHP-1, SHP-2/Syp, Drosophila corkscrew (csw), and Caenorhabditis elegans Protein Tyrosine Phosphatase (Ptp-2)) are cytoplasmic signaling enzymes. They are both targeted and regulated by interactions of their SH2 domains with phosphotyrosine docking sites. These proteins contain two SH2 domains (N-SH2, C-SH2) followed by a tyrosine phosphatase (PTP) domain, and a C-terminal extension. Shp1 and Shp2 have two tyrosyl phosphorylation sites in their C-tails, which are phosphorylated differentially by receptor and nonreceptor PTKs. Csw retains the proximal tyrosine and Ptp-2 lacks both sites. Shp-binding proteins include receptors, scaffolding adapters, and inhibitory receptors. Some of these bind both Shp1 and Shp2 while others bind only one. Most proteins that bind a Shp SH2 domain contain one or more immuno-receptor tyrosine-based inhibitory motifs (ITIMs): [SIVL]xpYxx[IVL]. Shp1 N-SH2 domain blocks the catalytic domain and keeps the enzyme in the inactive conformation, and is thus believed to regulate the phosphatase activity of SHP-1. Its C-SH2 domain is thought to be involved in searching for phosphotyrosine activators. The SHP2 N-SH2 domain is a conformational switch; it either binds and inhibits the phosphatase, or it binds phosphoproteins and activates the enzyme. The C-SH2 domain contributes binding energy and specificity, but it does not have a direct role in activation. Csw SH2 domain function is essential, but either SH2 domain can fulfill this requirement. The role of the csw SH2 domains during Sevenless receptor tyrosine kinase (SEV) signaling is to bind Daughter of Sevenless rather than activated SEV. Ptp-2 acts in oocytes downstream of sheath/oocyte gap junctions to promote major sperm protein (MSP)-induced MAP Kinase (MPK-1) phosphorylation. Ptp-2 functions in the oocyte cytoplasm, not at the cell surface to inhibit multiple RasGAPs, resulting in sustained Ras activation. It is thought that MSP triggers PTP-2/Ras activation and ROS production to stimulate MPK-1 activity essential for oocyte maturation and that secreted MSP domains and Cu/Zn superoxide dismutases function antagonistically to control ROS and MAPK signaling. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.


:

Pssm-ID: 198185  Cd Length: 99  Bit Score: 200.20  E-value: 2.19e-60
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 211 WFHGNLSGKEAEKLILERGKNGSFLVRESQSKPGDFVLSVRTDD-KVTHVMIRWQDKKYDVGGGESFGTLSELIDHYKRN 289
Cdd:cd09931   2 WFHGHLSGKEAEKLLLEKGKPGSFLVRESQSKPGDFVLSVRTDDdKVTHIMIRCQGGKYDVGGGEEFDSLTDLVEHYKKN 81

                        90
                ....*....|....*...
gi 23344946 290 PMVETCGTVVHLRQPFNA 307
Cdd:cd09931  82 PMVETSGTVVHLKQPLNA 99
 
Name Accession Description Interval E-value
PTPc-N11_6 cd14544
catalytic domain of tyrosine-protein phosphatase non-receptor type 11 and type 6; ...
 352-748 1.28e-149

catalytic domain of tyrosine-protein phosphatase non-receptor type 11 and type 6; Tyrosine-protein phosphatase non-receptor type 11 (PTPN11) and type 6 (PTPN6) belong to the family of classical tyrosine-specific protein tyrosine phosphatases (PTPs). PTPs (EC 3.1.3.48) catalyze the dephosphorylation of phosphotyrosine peptides. PTPN11 and PTPN6, are also called SH2 domain-containing tyrosine phosphatase 2 (SHP2) and 1 (SHP1), respectively. They contain two tandem SH2 domains: a catalytic PTP domain, and a C-terminal tail with regulatory properties. Although structurally similar, they have different localization and different roles in signal transduction. PTPN11/SHP2 is expressed ubiquitously and plays a positive role in cell signaling, leading to cell activation, while PTPN6/SHP1 expression is restricted mainly to hematopoietic and epithelial cells and functions as a negative regulator of signaling events.


Pssm-ID: 350392 [Multi-domain]  Cd Length: 251  Bit Score: 442.29  E-value: 1.28e-149
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 352 NRLKNRYRNILPYDHTRVKLLDVEHSVAGAEYINANYIRLPTDGDLYNMsssseslnssvpscpactaaqtqrncsncql 431
Cdd:cd14544   1 NKGKNRYKNILPFDHTRVILKDRDPNVPGSDYINANYIRNENEGPTTDE------------------------------- 49

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 432 qnktcvqcavksailpysncatcsrksdslskhkrsessassspssgsgsgpgssgtsgvssvngpgtptnltsgtagcl 511
Cdd:cd14544     --------------------------------------------------------------------------------

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 512 vgllkrhsndssgavsismaerererereMFKTYIATQGCLLtqqvNTVTDFWNMVWQENTRVIVMTTKEYERGKEKCAR 591
Cdd:cd14544  50 -----------------------------NAKTYIATQGCLE----NTVSDFWSMVWQENSRVIVMTTKEVERGKNKCVR 96

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 592 YWPDEGRSEQFGHARIQCVSENSTSDYTLREFLVSWRDQ--PARRIFHYHFQVWPDHGVPADPGCVLNFLQDVNTRQSHL 669
Cdd:cd14544  97 YWPDEGMQKQYGPYRVQNVSEHDTTDYTLRELQVSKLDQgdPIREIWHYQYLSWPDHGVPSDPGGVLNFLEDVNQRQESL 176

                       330       340       350       360       370       380       390
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 23344946 670 AQagekPGPICVHCSAGIGRTGTFIVIDMILDQIVRNGLDTEIDIQRTIQMVRSQRSGLVQTEAQYKFVYYAVQHYIQT 748
Cdd:cd14544 177 PH----AGPIVVHCSAGIGRTGTFIVIDMLLDQIKRKGLDCDIDIQKTIQMVRSQRSGMVQTEAQYKFIYVAVAQYIET 251
PTPc smart00194
Protein tyrosine phosphatase, catalytic domain;
326-744 1.99e-88

Protein tyrosine phosphatase, catalytic domain;


Pssm-ID: 214550 [Multi-domain]  Cd Length: 259  Bit Score: 282.63  E-value: 1.99e-88
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946    326 GFWEEFESLQQDSRDTFSRNEGYKQENRLKNRYRNILPYDHTRVKLLDVEHSVAGaeYINANYIRLPTDGdlynmsssse 405
Cdd:smart00194   1 GLEEEFEKLDRLKPDDESCTVAAFPENRDKNRYKDVLPYDHTRVKLKPPPGEGSD--YINASYIDGPNGP---------- 68

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946    406 slnssvpscpactaaqtqrncsncqlqnktcvqcavksailpysncatcsrksdslskhkrsessassspssgsgsgpgs 485
Cdd:smart00194     --------------------------------------------------------------------------------

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946    486 sgtsgvssvngpgtptnltsgtagclvgllkrhsndssgavsismaererereremfKTYIATQGCLltqqVNTVTDFWN 565
Cdd:smart00194  69 ---------------------------------------------------------KAYIATQGPL----PSTVEDFWR 87

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946    566 MVWQENTRVIVMTTKEYERGKEKCARYWPDE-GRSEQFGHARIQCVSENSTSDYTLREFLVSWRDQP-ARRIFHYHFQVW 643
Cdd:smart00194  88 MVWEQKVTVIVMLTELVEKGREKCAQYWPDEeGEPLTYGDITVTLKSVEKVDDYTIRTLEVTNTGCSeTRTVTHYHYTNW 167

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946    644 PDHGVPADPGCVLNFLQDVNTRQSHLAqagekpGPICVHCSAGIGRTGTFIVIDMILDQIVRNGldtEIDIQRTIQMVRS 723
Cdd:smart00194 168 PDHGVPESPESILDLIRAVRKSQSTST------GPIVVHCSAGVGRTGTFIAIDILLQQLEAGK---EVDIFEIVKELRS 238

                          410       420
                   ....*....|....*....|.
gi 23344946    724 QRSGLVQTEAQYKFVYYAVQH 744
Cdd:smart00194 239 QRPGMVQTEEQYIFLYRAILE 259
Y_phosphatase pfam00102
Protein-tyrosine phosphatase;
352-742 2.83e-76

Protein-tyrosine phosphatase;


Pssm-ID: 459674 [Multi-domain]  Cd Length: 234  Bit Score: 249.08  E-value: 2.83e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946   352 NRLKNRYRNILPYDHTRVKLLDVEHSvagAEYINANYIRlptdgdlynmsssseslnssvpscpactaaqtqrncsncql 431
Cdd:pfam00102   1 NLEKNRYKDVLPYDHTRVKLTGDPGP---SDYINASYID----------------------------------------- 36

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946   432 qnktcvqcavksailpysncatcsrksdslskhkrsessassspssgsgsgpgssgtsgvssvnGPGTPtnltsgtagcl 511
Cdd:pfam00102  37 ----------------------------------------------------------------GYKKP----------- 41

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946   512 vgllkrhsndssgavsismaererereremfKTYIATQGCLltqqVNTVTDFWNMVWQENTRVIVMTTKEYERGKEKCAR 591
Cdd:pfam00102  42 -------------------------------KKYIATQGPL----PNTVEDFWRMVWEEKVTIIVMLTELEEKGREKCAQ 86

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946   592 YWPDE-GRSEQFGHARIQCVSENS-TSDYTLREFLVSWRDQPA-RRIFHYHFQVWPDHGVPADPGCVLNFLQDVNTRQSH 668
Cdd:pfam00102  87 YWPEEeGESLEYGDFTVTLKKEKEdEKDYTVRTLEVSNGGSEEtRTVKHFHYTGWPDHGVPESPNSLLDLLRKVRKSSLD 166

                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 23344946   669 laqagEKPGPICVHCSAGIGRTGTFIVIDMILDQIVRNGldtEIDIQRTIQMVRSQRSGLVQTEAQYKFVYYAV 742
Cdd:pfam00102 167 -----GRSGPIVVHCSAGIGRTGTFIAIDIALQQLEAEG---EVDIFQIVKELRSQRPGMVQTLEQYIFLYDAI 232
SH2_C-SH2_SHP_like cd09931
C-terminal Src homology 2 (C-SH2) domain found in SH2 domain Phosphatases (SHP) proteins; The ...
 211-307 2.19e-60

C-terminal Src homology 2 (C-SH2) domain found in SH2 domain Phosphatases (SHP) proteins; The SH2 domain phosphatases (SHP-1, SHP-2/Syp, Drosophila corkscrew (csw), and Caenorhabditis elegans Protein Tyrosine Phosphatase (Ptp-2)) are cytoplasmic signaling enzymes. They are both targeted and regulated by interactions of their SH2 domains with phosphotyrosine docking sites. These proteins contain two SH2 domains (N-SH2, C-SH2) followed by a tyrosine phosphatase (PTP) domain, and a C-terminal extension. Shp1 and Shp2 have two tyrosyl phosphorylation sites in their C-tails, which are phosphorylated differentially by receptor and nonreceptor PTKs. Csw retains the proximal tyrosine and Ptp-2 lacks both sites. Shp-binding proteins include receptors, scaffolding adapters, and inhibitory receptors. Some of these bind both Shp1 and Shp2 while others bind only one. Most proteins that bind a Shp SH2 domain contain one or more immuno-receptor tyrosine-based inhibitory motifs (ITIMs): [SIVL]xpYxx[IVL]. Shp1 N-SH2 domain blocks the catalytic domain and keeps the enzyme in the inactive conformation, and is thus believed to regulate the phosphatase activity of SHP-1. Its C-SH2 domain is thought to be involved in searching for phosphotyrosine activators. The SHP2 N-SH2 domain is a conformational switch; it either binds and inhibits the phosphatase, or it binds phosphoproteins and activates the enzyme. The C-SH2 domain contributes binding energy and specificity, but it does not have a direct role in activation. Csw SH2 domain function is essential, but either SH2 domain can fulfill this requirement. The role of the csw SH2 domains during Sevenless receptor tyrosine kinase (SEV) signaling is to bind Daughter of Sevenless rather than activated SEV. Ptp-2 acts in oocytes downstream of sheath/oocyte gap junctions to promote major sperm protein (MSP)-induced MAP Kinase (MPK-1) phosphorylation. Ptp-2 functions in the oocyte cytoplasm, not at the cell surface to inhibit multiple RasGAPs, resulting in sustained Ras activation. It is thought that MSP triggers PTP-2/Ras activation and ROS production to stimulate MPK-1 activity essential for oocyte maturation and that secreted MSP domains and Cu/Zn superoxide dismutases function antagonistically to control ROS and MAPK signaling. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.


Pssm-ID: 198185  Cd Length: 99  Bit Score: 200.20  E-value: 2.19e-60
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 211 WFHGNLSGKEAEKLILERGKNGSFLVRESQSKPGDFVLSVRTDD-KVTHVMIRWQDKKYDVGGGESFGTLSELIDHYKRN 289
Cdd:cd09931   2 WFHGHLSGKEAEKLLLEKGKPGSFLVRESQSKPGDFVLSVRTDDdKVTHIMIRCQGGKYDVGGGEEFDSLTDLVEHYKKN 81

                        90
                ....*....|....*...
gi 23344946 290 PMVETCGTVVHLRQPFNA 307
Cdd:cd09931  82 PMVETSGTVVHLKQPLNA 99
PHA02738 PHA02738
hypothetical protein; Provisional
 543-747 7.34e-36

hypothetical protein; Provisional


Pssm-ID: 222923 [Multi-domain]  Cd Length: 320  Bit Score: 138.52  E-value: 7.34e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946  543 KTYIATQGCLLtqqvNTVTDFWNMVWQENTRVIVMTTKEYERGKEKCARYWPD-EGRSEQFGHARIQCVSENSTSDYTLR 621
Cdd:PHA02738  90 KKFICGQAPTR----QTCYDFYRMLWMEHVQIIVMLCKKKENGREKCFPYWSDvEQGSIRFGKFKITTTQVETHPHYVKS 165

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946  622 EFLVSWRDQPARRIFHYHFQVWPDHGVPADPGCVLNFLQDVNTRQSHLA----QAGEK---PGPICVHCSAGIGRTGTFI 694
Cdd:PHA02738 166 TLLLTDGTSATQTVTHFNFTAWPDHDVPKNTSEFLNFVLEVRQCQKELAqeslQIGHNrlqPPPIVVHCNAGLGRTPCYC 245

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|...
gi 23344946  695 VIDMildQIVRNGLDTEIDIQRTIQMVRSQRSGLVQTEAQYKFVYYAVQHYIQ 747
Cdd:PHA02738 246 VVDI---SISRFDACATVSIPSIVSSIRNQRYYSLFIPFQYFFCYRAVKRYVN 295
SH2 pfam00017
SH2 domain;
211-286 1.69e-32

SH2 domain;


Pssm-ID: 425423 [Multi-domain]  Cd Length: 77  Bit Score: 120.40  E-value: 1.69e-32
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 23344946   211 WFHGNLSGKEAEKLILERGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRWQDK-KYDVGGGESFGTLSELIDHY 286
Cdd:pfam00017   1 WYHGKISRQEAERLLLNGKPDGTFLVRESESTPGGYTLSVRDDGKVKHYKIQSTDNgGYYISGGVKFSSLAELVEHY 77
SH2 smart00252
Src homology 2 domains; Src homology 2 domains bind phosphotyrosine-containing polypeptides ...
 211-290 1.55e-29

Src homology 2 domains; Src homology 2 domains bind phosphotyrosine-containing polypeptides via 2 surface pockets. Specificity is provided via interaction with residues that are distinct from the phosphotyrosine. Only a single occurrence of a SH2 domain has been found in S. cerevisiae.


Pssm-ID: 214585 [Multi-domain]  Cd Length: 84  Bit Score: 112.32  E-value: 1.55e-29
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946    211 WFHGNLSGKEAEKLiLERGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRWQDK-KYDVGGGESFGTLSELIDHYKRN 289
Cdd:smart00252   3 WYHGFISREEAEKL-LKNEGDGDFLVRDSESSPGDYVLSVRVKGKVKHYRIRRNEDgKFYLEGGRKFPSLVELVEHYQKN 81


                   .
gi 23344946    290 P 290
Cdd:smart00252  82 S 82
COG5599 COG5599
Protein tyrosine phosphatase [Signal transduction mechanisms];
543-749 5.09e-29

Protein tyrosine phosphatase [Signal transduction mechanisms];


Pssm-ID: 444335 [Multi-domain]  Cd Length: 282  Bit Score: 117.50  E-value: 5.09e-29
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 543 KTYIATQGCLLTQQVntvtDFWNMVWQENTRVIVMTT--KEYERGKEKCARYWPDEGRseqfgHARIQCVSENSTSDY-- 618
Cdd:COG5599  77 HRYIATQYPLEEQLE----DFFQMLFDNNTPVLVVLAsdDEISKPKVKMPVYFRQDGE-----YGKYEVSSELTESIQlr 147

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 619 ---TLREFLVSWRD--QPARRIFHYHFQVWPDHGvPADPGCVLNFLQDVNtrqsHLAQAGEKP-GPICVHCSAGIGRTGT 692
Cdd:COG5599 148 dgiEARTYVLTIKGtgQKKIEIPVLHVKNWPDHG-AISAEALKNLADLID----KKEKIKDPDkLLPVVHCRAGVGRTGT 222

                       170       180       190       200       210
                ....*....|....*....|....*....|....*....|....*....|....*....
gi 23344946 693 FIVIdMILDQIVRNGLDTEIDIQRT-IQMVRSQRSGLVQTEAQY-KFVYYAVQHYIQTL 749
Cdd:COG5599 223 LIAC-LALSKSINALVQITLSVEEIvIDMRTSRNGGMVQTSEQLdVLVKLAEQQIRPLL 280
 
Name Accession Description Interval E-value
PTPc-N11_6 cd14544
catalytic domain of tyrosine-protein phosphatase non-receptor type 11 and type 6; ...
 352-748 1.28e-149

catalytic domain of tyrosine-protein phosphatase non-receptor type 11 and type 6; Tyrosine-protein phosphatase non-receptor type 11 (PTPN11) and type 6 (PTPN6) belong to the family of classical tyrosine-specific protein tyrosine phosphatases (PTPs). PTPs (EC 3.1.3.48) catalyze the dephosphorylation of phosphotyrosine peptides. PTPN11 and PTPN6, are also called SH2 domain-containing tyrosine phosphatase 2 (SHP2) and 1 (SHP1), respectively. They contain two tandem SH2 domains: a catalytic PTP domain, and a C-terminal tail with regulatory properties. Although structurally similar, they have different localization and different roles in signal transduction. PTPN11/SHP2 is expressed ubiquitously and plays a positive role in cell signaling, leading to cell activation, while PTPN6/SHP1 expression is restricted mainly to hematopoietic and epithelial cells and functions as a negative regulator of signaling events.


Pssm-ID: 350392 [Multi-domain]  Cd Length: 251  Bit Score: 442.29  E-value: 1.28e-149
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 352 NRLKNRYRNILPYDHTRVKLLDVEHSVAGAEYINANYIRLPTDGDLYNMsssseslnssvpscpactaaqtqrncsncql 431
Cdd:cd14544   1 NKGKNRYKNILPFDHTRVILKDRDPNVPGSDYINANYIRNENEGPTTDE------------------------------- 49

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 432 qnktcvqcavksailpysncatcsrksdslskhkrsessassspssgsgsgpgssgtsgvssvngpgtptnltsgtagcl 511
Cdd:cd14544     --------------------------------------------------------------------------------

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 512 vgllkrhsndssgavsismaerererereMFKTYIATQGCLLtqqvNTVTDFWNMVWQENTRVIVMTTKEYERGKEKCAR 591
Cdd:cd14544  50 -----------------------------NAKTYIATQGCLE----NTVSDFWSMVWQENSRVIVMTTKEVERGKNKCVR 96

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 592 YWPDEGRSEQFGHARIQCVSENSTSDYTLREFLVSWRDQ--PARRIFHYHFQVWPDHGVPADPGCVLNFLQDVNTRQSHL 669
Cdd:cd14544  97 YWPDEGMQKQYGPYRVQNVSEHDTTDYTLRELQVSKLDQgdPIREIWHYQYLSWPDHGVPSDPGGVLNFLEDVNQRQESL 176

                       330       340       350       360       370       380       390
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 23344946 670 AQagekPGPICVHCSAGIGRTGTFIVIDMILDQIVRNGLDTEIDIQRTIQMVRSQRSGLVQTEAQYKFVYYAVQHYIQT 748
Cdd:cd14544 177 PH----AGPIVVHCSAGIGRTGTFIVIDMLLDQIKRKGLDCDIDIQKTIQMVRSQRSGMVQTEAQYKFIYVAVAQYIET 251
PTPc-N11 cd14605
catalytic domain of tyrosine-protein phosphatase non-receptor type 11; Tyrosine-protein ...
 543-748 2.18e-94

catalytic domain of tyrosine-protein phosphatase non-receptor type 11; Tyrosine-protein phosphatase non-receptor type 11 (PTPN11), also called SH2 domain-containing tyrosine phosphatase 2 (SHP-2 or SHP2), belongs to the family of classical tyrosine-specific protein tyrosine phosphatases (PTPs). PTPs (EC 3.1.3.48) catalyze the dephosphorylation of phosphotyrosine peptides. PTPN11 promotes the activation of the RAS/Mitogen-Activated Protein Kinases (MAPK) Extracellular-Regulated Kinases 1/2 (ERK1/2) pathway, a canonical signaling cascade that plays key roles in various cellular processes, including proliferation, survival, differentiation, migration, or metabolism. It also regulates the phosphoinositide 3-kinase (PI3K)/AKT pathway, a fundamental cascade that functions in cell survival, proliferation, migration, morphogenesis, and metabolism. PTPN11 dysregulation is associated with several developmental diseases and malignancies, such as Noonan syndrome and juvenile myelomonocytic leukemia. It contains two tandem SH2 domains, a catalytic PTP domain, and a C-terminal tail with regulatory properties.


Pssm-ID: 350453 [Multi-domain]  Cd Length: 253  Bit Score: 298.47  E-value: 2.18e-94
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 543 KTYIATQGCLLtqqvNTVTDFWNMVWQENTRVIVMTTKEYERGKEKCARYWPDEGRSEQFGHARIQCVSENSTSDYTLRE 622
Cdd:cd14605  54 KSYIATQGCLQ----NTVNDFWRMVFQENSRVIVMTTKEVERGKSKCVKYWPDEYALKEYGVMRVRNVKESAAHDYILRE 129

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 623 FLVSWRDQ--PARRIFHYHFQVWPDHGVPADPGCVLNFLQDVNTRQSHLAQAGekpgPICVHCSAGIGRTGTFIVIDMIL 700
Cdd:cd14605 130 LKLSKVGQgnTERTVWQYHFRTWPDHGVPSDPGGVLDFLEEVHHKQESIMDAG----PVVVHCSAGIGRTGTFIVIDILI 205

                       170       180       190       200
                ....*....|....*....|....*....|....*....|....*...
gi 23344946 701 DQIVRNGLDTEIDIQRTIQMVRSQRSGLVQTEAQYKFVYYAVQHYIQT 748
Cdd:cd14605 206 DIIREKGVDCDIDVPKTIQMVRSQRSGMVQTEAQYRFIYMAVQHYIET 253
PTPc-N6 cd14606
catalytic domain of tyrosine-protein phosphatase non-receptor type 6; Tyrosine-protein ...
 335-748 1.06e-90

catalytic domain of tyrosine-protein phosphatase non-receptor type 6; Tyrosine-protein phosphatase non-receptor type 6 (PTPN6), also called SH2 domain-containing protein-tyrosine phosphatase 1 (SHP1 or SHP-1), belongs to the family of classical tyrosine-specific protein tyrosine phosphatases (PTPs). PTPs (EC 3.1.3.48) catalyze the dephosphorylation of phosphotyrosine peptides. PTPN6 expression is restricted mainly to hematopoietic and epithelial cells. It is an important regulator of hematopoietic cells, downregulating pathways that promote cell growth, survival, adhesion, and activation. It regulates glucose homeostasis by modulating insulin signalling in the liver and muscle, and it also negatively regulates bone resorption, affecting both the formation and the function of osteoclasts. PTPN6 contains two tandem SH2 domains, a catalytic PTP domain, and a C-terminal tail with regulatory properties.


Pssm-ID: 350454 [Multi-domain]  Cd Length: 266  Bit Score: 289.09  E-value: 1.06e-90
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 335 QQDSRDTFSRNEGYKQENRLKNRYRNILPYDHTRVKLLDVEHSVAGAEYINANYIRlptdgdlynmsssseslnssvpsc 414
Cdd:cd14606   1 KQEVKNLHQRLEGQRPENKSKNRYKNILPFDHSRVILQGRDSNIPGSDYINANYVK------------------------ 56

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 415 pactaaqtqrncsncqlqNKtcvqcavksailpysncatcsrksdslskhkrsessassspssgsgsgpgssgtsgvssV 494
Cdd:cd14606  57 ------------------NQ-----------------------------------------------------------L 59

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 495 NGPGTPTnltsgtagclvgllkrhsndssgavsismaererereremfKTYIATQGCLLTqqvnTVTDFWNMVWQENTRV 574
Cdd:cd14606  60 LGPDENA-----------------------------------------KTYIASQGCLEA----TVNDFWQMAWQENSRV 94

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 575 IVMTTKEYERGKEKCARYWPDEGRSEQFGHARIQCVSENSTSDYTLREFLVSW--RDQPARRIFHYHFQVWPDHGVPADP 652
Cdd:cd14606  95 IVMTTREVEKGRNKCVPYWPEVGMQRAYGPYSVTNCGEHDTTEYKLRTLQVSPldNGELIREIWHYQYLSWPDHGVPSEP 174

                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 653 GCVLNFLQDVNTRQSHLAQAGekpgPICVHCSAGIGRTGTFIVIDMILDQIVRNGLDTEIDIQRTIQMVRSQRSGLVQTE 732
Cdd:cd14606 175 GGVLSFLDQINQRQESLPHAG----PIIVHCSAGIGRTGTIIVIDMLMENISTKGLDCDIDIQKTIQMVRAQRSGMVQTE 250

                       410
                ....*....|....*.
gi 23344946 733 AQYKFVYYAVQHYIQT 748
Cdd:cd14606 251 AQYKFIYVAIAQFIET 266
PTPc smart00194
Protein tyrosine phosphatase, catalytic domain;
326-744 1.99e-88

Protein tyrosine phosphatase, catalytic domain;


Pssm-ID: 214550 [Multi-domain]  Cd Length: 259  Bit Score: 282.63  E-value: 1.99e-88
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946    326 GFWEEFESLQQDSRDTFSRNEGYKQENRLKNRYRNILPYDHTRVKLLDVEHSVAGaeYINANYIRLPTDGdlynmsssse 405
Cdd:smart00194   1 GLEEEFEKLDRLKPDDESCTVAAFPENRDKNRYKDVLPYDHTRVKLKPPPGEGSD--YINASYIDGPNGP---------- 68

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946    406 slnssvpscpactaaqtqrncsncqlqnktcvqcavksailpysncatcsrksdslskhkrsessassspssgsgsgpgs 485
Cdd:smart00194     --------------------------------------------------------------------------------

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946    486 sgtsgvssvngpgtptnltsgtagclvgllkrhsndssgavsismaererereremfKTYIATQGCLltqqVNTVTDFWN 565
Cdd:smart00194  69 ---------------------------------------------------------KAYIATQGPL----PSTVEDFWR 87

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946    566 MVWQENTRVIVMTTKEYERGKEKCARYWPDE-GRSEQFGHARIQCVSENSTSDYTLREFLVSWRDQP-ARRIFHYHFQVW 643
Cdd:smart00194  88 MVWEQKVTVIVMLTELVEKGREKCAQYWPDEeGEPLTYGDITVTLKSVEKVDDYTIRTLEVTNTGCSeTRTVTHYHYTNW 167

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946    644 PDHGVPADPGCVLNFLQDVNTRQSHLAqagekpGPICVHCSAGIGRTGTFIVIDMILDQIVRNGldtEIDIQRTIQMVRS 723
Cdd:smart00194 168 PDHGVPESPESILDLIRAVRKSQSTST------GPIVVHCSAGVGRTGTFIAIDILLQQLEAGK---EVDIFEIVKELRS 238

                          410       420
                   ....*....|....*....|.
gi 23344946    724 QRSGLVQTEAQYKFVYYAVQH 744
Cdd:smart00194 239 QRPGMVQTEEQYIFLYRAILE 259
Y_phosphatase pfam00102
Protein-tyrosine phosphatase;
352-742 2.83e-76

Protein-tyrosine phosphatase;


Pssm-ID: 459674 [Multi-domain]  Cd Length: 234  Bit Score: 249.08  E-value: 2.83e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946   352 NRLKNRYRNILPYDHTRVKLLDVEHSvagAEYINANYIRlptdgdlynmsssseslnssvpscpactaaqtqrncsncql 431
Cdd:pfam00102   1 NLEKNRYKDVLPYDHTRVKLTGDPGP---SDYINASYID----------------------------------------- 36

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946   432 qnktcvqcavksailpysncatcsrksdslskhkrsessassspssgsgsgpgssgtsgvssvnGPGTPtnltsgtagcl 511
Cdd:pfam00102  37 ----------------------------------------------------------------GYKKP----------- 41

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946   512 vgllkrhsndssgavsismaererereremfKTYIATQGCLltqqVNTVTDFWNMVWQENTRVIVMTTKEYERGKEKCAR 591
Cdd:pfam00102  42 -------------------------------KKYIATQGPL----PNTVEDFWRMVWEEKVTIIVMLTELEEKGREKCAQ 86

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946   592 YWPDE-GRSEQFGHARIQCVSENS-TSDYTLREFLVSWRDQPA-RRIFHYHFQVWPDHGVPADPGCVLNFLQDVNTRQSH 668
Cdd:pfam00102  87 YWPEEeGESLEYGDFTVTLKKEKEdEKDYTVRTLEVSNGGSEEtRTVKHFHYTGWPDHGVPESPNSLLDLLRKVRKSSLD 166

                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 23344946   669 laqagEKPGPICVHCSAGIGRTGTFIVIDMILDQIVRNGldtEIDIQRTIQMVRSQRSGLVQTEAQYKFVYYAV 742
Cdd:pfam00102 167 -----GRSGPIVVHCSAGIGRTGTFIAIDIALQQLEAEG---EVDIFQIVKELRSQRPGMVQTLEQYIFLYDAI 232
PTPc cd00047
catalytic domain of protein tyrosine phosphatases; Protein tyrosine phosphatases (PTP, EC 3.1. ...
 543-740 2.44e-74

catalytic domain of protein tyrosine phosphatases; Protein tyrosine phosphatases (PTP, EC 3.1.3.48) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG, and are characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.


Pssm-ID: 350343 [Multi-domain]  Cd Length: 200  Bit Score: 242.58  E-value: 2.44e-74
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 543 KTYIATQGCLLtqqvNTVTDFWNMVWQENTRVIVMTTKEYERGKEKCARYWPDEGRSE-QFGHARIQCVSENSTSDYTLR 621
Cdd:cd00047  14 KEYIATQGPLP----NTVEDFWRMVWEQKVSVIVMLTNLVEKGREKCERYWPEEGGKPlEYGDITVTLVSEEELSDYTIR 89

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 622 EFLVSWRD-QPARRIFHYHFQVWPDHGVPADPGCVLNFLQDVNTRQSHlaqageKPGPICVHCSAGIGRTGTFIVIDMIL 700
Cdd:cd00047  90 TLELSPKGcSESREVTHLHYTGWPDHGVPSSPEDLLALVRRVRKEARK------PNGPIVVHCSAGVGRTGTFIAIDILL 163

                       170       180       190       200
                ....*....|....*....|....*....|....*....|
gi 23344946 701 DQIVRNGldtEIDIQRTIQMVRSQRSGLVQTEAQYKFVYY 740
Cdd:cd00047 164 ERLEAEG---EVDVFEIVKALRKQRPGMVQTLEQYEFIYE 200
PTP_fungal cd18533
fungal protein tyrosine phosphatases; This subfamily contains Saccharomyces cerevisiae ...
 543-739 5.56e-63

fungal protein tyrosine phosphatases; This subfamily contains Saccharomyces cerevisiae protein-tyrosine phosphatases 1 (PTP1) and 2 (PTP2), Schizosaccharomyces pombe PTP1, PTP2, and PTP3, and similar fungal proteins. PTPs (EC 3.1.3.48) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. PTP2, together with PTP3, is the major phosphatase that dephosphorylates and inactivates the MAP kinase HOG1 and also modulates its subcellular localization.


Pssm-ID: 350509 [Multi-domain]  Cd Length: 212  Bit Score: 212.11  E-value: 5.56e-63
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 543 KTYIATQGCLltqqVNTVTDFWNMVWQENTRVIVMTTKEYERGKEKCARYWPDEGRSEQFGHARIQCVS--ENSTSDYTL 620
Cdd:cd18533  15 KRYIATQGPL----PATIGDFWKMIWQNNVGVIVMLTPLVENGREKCDQYWPSGEYEGEYGDLTVELVSeeENDDGGFIV 90

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 621 REFLVSWRDQPARRIFHYHFQVWPDHGVPADPGCVLNFLQDVNtrqsHLAQAGEKPGPICVHCSAGIGRTGTFIVIDMIL 700
Cdd:cd18533  91 REFELSKEDGKVKKVYHIQYKSWPDFGVPDSPEDLLTLIKLKR----ELNDSASLDPPIIVHCSAGVGRTGTFIALDSLL 166

                       170       180       190       200
                ....*....|....*....|....*....|....*....|....*
gi 23344946 701 DQIVRNGLDT-----EID-IQRTIQMVRSQRSGLVQTEAQYKFVY 739
Cdd:cd18533 167 DELKRGLSDSqdledSEDpVYEIVNQLRKQRMSMVQTLRQYIFLY 211
R5-PTPc-1 cd14549
catalytic domain of R5 subfamily receptor-type tyrosine-protein phosphatases, repeat 1; The R5 ...
 543-739 8.24e-62

catalytic domain of R5 subfamily receptor-type tyrosine-protein phosphatases, repeat 1; The R5 subfamily of receptor-type phosphotyrosine phosphatases (RPTP) is composed of receptor-type tyrosine-protein phosphatase Z (PTPRZ) and G (PTPRG). They belong to the family of classical tyrosine-specific protein tyrosine phosphatases (PTPs). PTPs (EC 3.1.3.48) catalyze the dephosphorylation of phosphotyrosine peptides. They are type 1 integral membrane proteins consisting of an extracellular region with a carbonic anhydrase-like (CAH) and a fibronectin type III (FN3) domains, and an intracellular region with a catalytic PTP domain (repeat 1) proximal to the membrane, and a catalytically inactive PTP-fold domain (repeat 2) distal to the membrane. This model represents the catalytic PTP domain (repeat 1).


Pssm-ID: 350397 [Multi-domain]  Cd Length: 204  Bit Score: 208.36  E-value: 8.24e-62
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 543 KTYIATQGCLltqqVNTVTDFWNMVWQENTRVIVMTTKEYERGKEKCARYWPDEGrSEQFGHARIQCVSENSTSDYTLRE 622
Cdd:cd14549  14 RAYIATQGPL----PSTFDDFWRMVWEQNSAIIVMITNLVERGRRKCDQYWPKEG-TETYGNIQVTLLSTEVLATYTVRT 88

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 623 FLVS------WRDQPA-RRIFHYHFQVWPDHGVPADPGCVLNFLQDVNTRQSHLAqagekpGPICVHCSAGIGRTGTFIV 695
Cdd:cd14549  89 FSLKnlklkkVKGRSSeRVVYQYHYTQWPDHGVPDYTLPVLSFVRKSSAANPPGA------GPIVVHCSAGVGRTGTYIV 162

                       170       180       190       200
                ....*....|....*....|....*....|....*....|....
gi 23344946 696 IDMILDQIVRNGldtEIDIQRTIQMVRSQRSGLVQTEAQYKFVY 739
Cdd:cd14549 163 IDSMLQQIQDKG---TVNVFGFLKHIRTQRNYLVQTEEQYIFIH 203
SH2_C-SH2_SHP_like cd09931
C-terminal Src homology 2 (C-SH2) domain found in SH2 domain Phosphatases (SHP) proteins; The ...
 211-307 2.19e-60

C-terminal Src homology 2 (C-SH2) domain found in SH2 domain Phosphatases (SHP) proteins; The SH2 domain phosphatases (SHP-1, SHP-2/Syp, Drosophila corkscrew (csw), and Caenorhabditis elegans Protein Tyrosine Phosphatase (Ptp-2)) are cytoplasmic signaling enzymes. They are both targeted and regulated by interactions of their SH2 domains with phosphotyrosine docking sites. These proteins contain two SH2 domains (N-SH2, C-SH2) followed by a tyrosine phosphatase (PTP) domain, and a C-terminal extension. Shp1 and Shp2 have two tyrosyl phosphorylation sites in their C-tails, which are phosphorylated differentially by receptor and nonreceptor PTKs. Csw retains the proximal tyrosine and Ptp-2 lacks both sites. Shp-binding proteins include receptors, scaffolding adapters, and inhibitory receptors. Some of these bind both Shp1 and Shp2 while others bind only one. Most proteins that bind a Shp SH2 domain contain one or more immuno-receptor tyrosine-based inhibitory motifs (ITIMs): [SIVL]xpYxx[IVL]. Shp1 N-SH2 domain blocks the catalytic domain and keeps the enzyme in the inactive conformation, and is thus believed to regulate the phosphatase activity of SHP-1. Its C-SH2 domain is thought to be involved in searching for phosphotyrosine activators. The SHP2 N-SH2 domain is a conformational switch; it either binds and inhibits the phosphatase, or it binds phosphoproteins and activates the enzyme. The C-SH2 domain contributes binding energy and specificity, but it does not have a direct role in activation. Csw SH2 domain function is essential, but either SH2 domain can fulfill this requirement. The role of the csw SH2 domains during Sevenless receptor tyrosine kinase (SEV) signaling is to bind Daughter of Sevenless rather than activated SEV. Ptp-2 acts in oocytes downstream of sheath/oocyte gap junctions to promote major sperm protein (MSP)-induced MAP Kinase (MPK-1) phosphorylation. Ptp-2 functions in the oocyte cytoplasm, not at the cell surface to inhibit multiple RasGAPs, resulting in sustained Ras activation. It is thought that MSP triggers PTP-2/Ras activation and ROS production to stimulate MPK-1 activity essential for oocyte maturation and that secreted MSP domains and Cu/Zn superoxide dismutases function antagonistically to control ROS and MAPK signaling. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.


Pssm-ID: 198185  Cd Length: 99  Bit Score: 200.20  E-value: 2.19e-60
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 211 WFHGNLSGKEAEKLILERGKNGSFLVRESQSKPGDFVLSVRTDD-KVTHVMIRWQDKKYDVGGGESFGTLSELIDHYKRN 289
Cdd:cd09931   2 WFHGHLSGKEAEKLLLEKGKPGSFLVRESQSKPGDFVLSVRTDDdKVTHIMIRCQGGKYDVGGGEEFDSLTDLVEHYKKN 81

                        90
                ....*....|....*...
gi 23344946 290 PMVETCGTVVHLRQPFNA 307
Cdd:cd09931  82 PMVETSGTVVHLKQPLNA 99
R3-PTPc cd14548
catalytic domain of R3 subfamily receptor-type tyrosine-protein phosphatases and similar ...
 545-739 6.82e-58

catalytic domain of R3 subfamily receptor-type tyrosine-protein phosphatases and similar proteins; R3 subfamily receptor-type phosphotyrosine phosphatases (RPTP) are characterized by a unique modular composition consisting of multiple extracellular fibronectin type III (FN3) repeats and a single (most RPTP subtypes have two) cytoplasmic catalytic PTP domain. Vertebrate members include receptor-type tyrosine-protein phosphatase-like O (PTPRO), J (PTPRJ), Q (PTPRQ), B (PTPRB), V (PTPRV) and H (PTPRH). They belong to the family of classical tyrosine-specific protein tyrosine phosphatases (PTPs). PTPs (EC 3.1.3.48) catalyze the dephosphorylation of phosphotyrosine peptides. Most members are PTPs, except for PTPRQ, which dephosphorylates phosphatidylinositide substrates. PTPRV is characterized only in rodents; its function has been lost in humans. Both vertebrate and invertebrate R3 subfamily RPTPs are involved in the control of a variety of cellular processes, including cell growth, differentiation, mitotic cycle and oncogenic transformation.


Pssm-ID: 350396 [Multi-domain]  Cd Length: 222  Bit Score: 198.35  E-value: 6.82e-58
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 545 YIATQGCLltqqVNTVTDFWNMVWQENTRVIVMTTKEYERGKEKCARYWPDEGRSEQFGHARIQCVSENSTSDYTLREFL 624
Cdd:cd14548  41 FIATQGPL----PGTKDDFWRMVWEQNSHTIVMLTQCMEKGRVKCDHYWPFDQDPVYYGDITVTMLSESVLPDWTIREFK 116

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 625 VSWRDQpARRIFHYHFQVWPDHGVPADPGCVLNFLQDVNTRQSHLAqagekpGPICVHCSAGIGRTGTFIVIDMILDQIV 704
Cdd:cd14548 117 LERGDE-VRSVRQFHFTAWPDHGVPEAPDSLLRFVRLVRDYIKQEK------GPTIVHCSAGVGRTGTFIALDRLLQQIE 189

                       170       180       190
                ....*....|....*....|....*....|....*
gi 23344946 705 RNGLdteIDIQRTIQMVRSQRSGLVQTEAQYKFVY 739
Cdd:cd14548 190 SEDY---VDIFGIVYDLRKHRPLMVQTEAQYIFLH 221
PTPc-KIM cd14547
catalytic domain of the kinase interaction motif (KIM) family of protein-tyrosine phosphatases; ...
 543-740 4.65e-56

catalytic domain of the kinase interaction motif (KIM) family of protein-tyrosine phosphatases; The kinase interaction motif (KIM) family of protein-tyrosine phosphatases (PTPs) includes tyrosine-protein phosphatases non-receptor type 7 (PTPN7) and non-receptor type 5 (PTPN5), and protein-tyrosine phosphatase receptor type R (PTPRR). PTPN7 is also called hematopoietic protein-tyrosine phosphatase (HePTP) while PTPN5 is also called striatal-enriched protein-tyrosine phosphatase (STEP). They belong to the family of classical tyrosine-specific PTPs (EC 3.1.3.48) that catalyze the dephosphorylation of phosphotyrosine peptides. KIM-PTPs are characterized by the presence of a 16-amino-acid KIM that binds specifically to members of the MAPK (mitogen-activated protein kinase) family. They are highly specific to the MAPKs ERK1/2 (extracellular-signal-regulated kinase 1/2) and p38, over JNK (c-Jun N-terminal kinase); they dephosphorylate these kinases and thereby critically modulate cell proliferation and differentiation.


Pssm-ID: 350395 [Multi-domain]  Cd Length: 224  Bit Score: 193.00  E-value: 4.65e-56
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 543 KTYIATQGCLltqqVNTVTDFWNMVWQENTRVIVMTTKEYERgKEKCARYWPDEgRSEQFGHARIQCVSENSTSDYTLRE 622
Cdd:cd14547  41 KAYIATQGPL----PNTVADFWRMVWQEKTPIIVMITNLTEA-KEKCAQYWPEE-ENETYGDFEVTVQSVKETDGYTVRK 114

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 623 FLVSWRDQpARRIFHYHFQVWPDHGVPADPGCVLNFLQDVNtrqsHLAQAGEKPGPICVHCSAGIGRTGTFIVIDMILDQ 702
Cdd:cd14547 115 LTLKYGGE-KRYLKHYWYTSWPDHKTPEAAQPLLSLVQEVE----EARQTEPHRGPIVVHCSAGIGRTGCFIATSIGCQQ 189

                       170       180       190
                ....*....|....*....|....*....|....*...
gi 23344946 703 IVRNGldtEIDIQRTIQMVRSQRSGLVQTEAQYKFVYY 740
Cdd:cd14547 190 LREEG---VVDVLGIVCQLRLDRGGMVQTAEQYEFVHR 224
PTPc-N9 cd14543
catalytic domain of tyrosine-protein phosphatase non-receptor type 9; Tyrosine-protein ...
 545-739 2.60e-55

catalytic domain of tyrosine-protein phosphatase non-receptor type 9; Tyrosine-protein phosphatase non-receptor type 9 (PTPN9), also called protein-tyrosine phosphatase MEG2, belongs to the family of classical tyrosine-specific protein tyrosine phosphatases (PTPs). PTPs (EC 3.1.3.48) catalyze the dephosphorylation of phosphotyrosine peptides. PTPN9 plays an important role in promoting intracellular secretary vesicle fusion in hematopoietic cells and promotes the dephosphorylation of ErbB2 and EGFR in breast cancer cells, leading to impaired activation of STAT5 and STAT3. It also directly dephosphorylates STAT3 at the Tyr705 residue, resulting in its inactivation. PTPN9 has been found to be dysregulated in various human cancers, including breast, colorectal, and gastric cancer.


Pssm-ID: 350391 [Multi-domain]  Cd Length: 271  Bit Score: 192.96  E-value: 2.60e-55
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 545 YIATQGCLltqqVNTVTDFWNMVWQENTRVIVMTTKEYERGKEKCARYWP-DEGRSEQFGHARIQCVSENSTSDYTLREF 623
Cdd:cd14543  74 YIATQGPL----PKTYSDFWRMVWEQKVLVIVMTTRVVERGRVKCGQYWPlEEGSSLRYGDLTVTNLSVENKEHYKKTTL 149

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 624 LV--SWRDQpARRIFHYHFQVWPDHGVPADPGCVLNFLQDVNTRQSHLAQA------GEKPG-PICVHCSAGIGRTGTFI 694
Cdd:cd14543 150 EIhnTETDE-SRQVTHFQFTSWPDFGVPSSAAALLDFLGEVRQQQALAVKAmgdrwkGHPPGpPIVVHCSAGIGRTGTFC 228

                       170       180       190       200
                ....*....|....*....|....*....|....*....|....*
gi 23344946 695 VIDMILDQIVRNGldtEIDIQRTIQMVRSQRSGLVQTEAQYKFVY 739
Cdd:cd14543 229 TLDICLSQLEDVG---TLNVMQTVRRMRTQRAFSIQTPDQYYFCY 270
PTPc-N20_13 cd14538
catalytic domain of tyrosine-protein phosphatase non-receptor type 20 and type 13; ...
 545-742 3.58e-55

catalytic domain of tyrosine-protein phosphatase non-receptor type 20 and type 13; Tyrosine-protein phosphatase non-receptor type 20 (PTPN20) and type 13 (PTPN13, also known as PTPL1) belong to the family of classical tyrosine-specific protein tyrosine phosphatases (PTPs). PTPs (EC 3.1.3.48) catalyze the dephosphorylation of phosphotyrosine peptides. Human PTPN20 is a widely expressed phosphatase with a dynamic subcellular distribution that is targeted to sites of actin polymerization. Human PTPN13 is an important regulator of tumor aggressiveness.


Pssm-ID: 350386 [Multi-domain]  Cd Length: 207  Bit Score: 189.89  E-value: 3.58e-55
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 545 YIATQGCLLtqqvNTVTDFWNMVWQENTRVIVMTTKEYERGKEKCARYWPDEGRSEQF--GHARIQCVSENSTSDYTLRE 622
Cdd:cd14538  18 YIACQGPLP----NTTGDFWQMVWEQKSEVIAMVTQDVEGGKVKCHRYWPDSLNKPLIcgGRLEVSLEKYQSLQDFVIRR 93

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 623 FLVswRDQPA---RRIFHYHFQVWPDHGVPADPGCVLNFLQDVntRQSHLAqagekpGPICVHCSAGIGRTGTFIVIDMI 699
Cdd:cd14538  94 ISL--RDKETgevHHITHLNFTTWPDHGTPQSADPLLRFIRYM--RRIHNS------GPIVVHCSAGIGRTGVLITIDVA 163

                       170       180       190       200
                ....*....|....*....|....*....|....*....|...
gi 23344946 700 LDQIVRnglDTEIDIQRTIQMVRSQRSGLVQTEAQYKFVYYAV 742
Cdd:cd14538 164 LGLIER---DLPFDIQDIVKDLREQRQGMIQTKDQYIFCYKAC 203
PTPc-N3_4 cd14541
catalytic domain of tyrosine-protein phosphatase non-receptor type 21 and type 14; ...
 545-742 1.33e-54

catalytic domain of tyrosine-protein phosphatase non-receptor type 21 and type 14; Tyrosine-protein phosphatase non-receptor type 3 (PTPN3) and type 4 (PTPN4) belong to the family of classical tyrosine-specific protein tyrosine phosphatases (PTPs). PTPs (EC 3.1.3.48) catalyze the dephosphorylation of phosphotyrosine peptides. PTPN3 and PTPN4 are large modular proteins containing an N-terminal FERM domain, a PDZ domain and a C-terminal catalytic PTP domain. PTPN3 interacts with mitogen-activated protein kinase p38gamma and serves as its specific phosphatase. PTPN4 functions in TCR cell signaling, apoptosis, cerebellar synaptic plasticity, and innate immune responses.


Pssm-ID: 350389 [Multi-domain]  Cd Length: 212  Bit Score: 188.69  E-value: 1.33e-54
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 545 YIATQGCLltqqVNTVTDFWNMVWQENTRVIVMTTKEYERGKEKCARYWPDEGRSEQFGHARIQCVSENSTSDYTLREFL 624
Cdd:cd14541  21 YIAAQGPL----PNTCADFWQMVWEQKSTLIVMLTTLVERGRVKCHQYWPDLGETMQFGNLQITCVSEEVTPSFAFREFI 96

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 625 VSWRDQP-ARRIFHYHFQVWPDHGVPADPGCVLNFLQDVntRQSHLAQAgekpGPICVHCSAGIGRTGTFIVIDMILDQI 703
Cdd:cd14541  97 LTNTNTGeERHITQMQYLAWPDHGVPDDSSDFLDFVKRV--RQNRVGMV----EPTVVHCSAGIGRTGVLITMETAMCLI 170

                       170       180       190
                ....*....|....*....|....*....|....*....
gi 23344946 704 VRNGLDTEIDIQRTIqmvRSQRSGLVQTEAQYKFVYYAV 742
Cdd:cd14541 171 EANEPVYPLDIVRTM---RDQRAMLIQTPSQYRFVCEAI 206
PTPc-N22_18_12 cd14542
catalytic domain of tyrosine-protein phosphatase non-receptor type 22, type 18 and type 12; ...
 543-739 4.24e-54

catalytic domain of tyrosine-protein phosphatase non-receptor type 22, type 18 and type 12; Tyrosine-protein phosphatase non-receptor type 22 (PTPN22), type 18 (PTPN18) and type 12 (PTPN12) belong to the family of classical tyrosine-specific protein tyrosine phosphatases (PTPs). PTPs (EC 3.1.3.48) catalyze the dephosphorylation of phosphotyrosine peptides. PTPN22 is expressed in hematopoietic cells and it functions as a key regulator of immune homeostasis by inhibiting T-cell receptor signaling through the direct dephosphorylation of Src family kinases (Lck and Fyn), ITAMs of the TCRz/CD3 complex, and other signaling molecules. TPN18 regulates HER2-mediated cellular functions through defining both its phosphorylation and ubiquitination states. PTPN12 is characterized as a tumor suppressor and a pivotal regulator of EGFR/HER2 signaling.


Pssm-ID: 350390 [Multi-domain]  Cd Length: 202  Bit Score: 186.86  E-value: 4.24e-54
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 543 KTYIATQGCLltqqVNTVTDFWNMVWQENTRVIVMTTKEYERGKEKCARYWPDEGRSE-QFGHARIQCVSE-NSTSDYTL 620
Cdd:cd14542  14 KAYIATQGPL----PNTVLDFWRMIWEYNVQVIVMACREFEMGKKKCERYWPEEGEEQlQFGPFKISLEKEkRVGPDFLI 89

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 621 REFLVSwRDQPARRIFHYHFQVWPDHGVPADPGCVLNFLQDVNTRQSHlaqageKPGPICVHCSAGIGRTGTFIVIDMIL 700
Cdd:cd14542  90 RTLKVT-FQKESRTVYQFHYTAWPDHGVPSSVDPILDLVRLVRDYQGS------EDVPICVHCSAGCGRTGTICAIDYVW 162

                       170       180       190
                ....*....|....*....|....*....|....*....
gi 23344946 701 DQIVRNGLDTEIDIQRTIQMVRSQRSGLVQTEAQYKFVY 739
Cdd:cd14542 163 NLLKTGKIPEEFSLFDLVREMRKQRPAMVQTKEQYELVY 201
R-PTPc-LAR-1 cd14553
catalytic domain of LAR family receptor-type tyrosine-protein phosphatases, repeat 1; The LAR ...
 545-742 3.26e-53

catalytic domain of LAR family receptor-type tyrosine-protein phosphatases, repeat 1; The LAR (leukocyte common antigen-related) family of receptor-type tyrosine-protein phosphatases (RPTPs) include three vertebrate members: LAR (or PTPRF), R-PTP-delta (or PTPRD), and R-PTP-sigma (or PTPRS). They belong to the larger family of classical tyrosine-specific protein tyrosine phosphatases (PTPs). PTPs (EC 3.1.3.48) catalyze the dephosphorylation of phosphotyrosine peptides. LAR-RPTPs are synaptic adhesion molecules; they bind to distinct synaptic membrane proteins and are physiologically responsible for mediating presynaptic development by shaping various synaptic adhesion pathways. They play roles in various aspects of neuronal development, including axon guidance, neurite extension, and synapse formation and function. LAR-RPTPs contain an extracellular region with three immunoglobulin-like (Ig) domains and four to eight fibronectin type III (FN3) repeats (determined by alternative splicing), a single transmembrane domain, followed by an intracellular region with a membrane-proximal catalytic PTP domain (repeat 1, also called D1) and a membrane-distal non-catalytic PTP-like domain (repeat 2, also called D2). This model represents the catalytic PTP domain (repeat 1).


Pssm-ID: 350401 [Multi-domain]  Cd Length: 238  Bit Score: 185.68  E-value: 3.26e-53
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 545 YIATQGCLLtqqvNTVTDFWNMVWQENTRVIVMTTKEYERGKEKCARYWPDEGrSEQFGHARIQCVSENSTSDYTLREFL 624
Cdd:cd14553  48 YIATQGPLP----ETFGDFWRMVWEQRSATIVMMTKLEERSRVKCDQYWPTRG-TETYGLIQVTLLDTVELATYTVRTFA 122

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 625 VSWRDQPARR-IFHYHFQVWPDHGVPADPGCVLNFLQDVntRQSHLAQAgekpGPICVHCSAGIGRTGTFIVIDMILDQI 703
Cdd:cd14553 123 LHKNGSSEKReVRQFQFTAWPDHGVPEHPTPFLAFLRRV--KACNPPDA----GPIVVHCSAGVGRTGCFIVIDSMLERI 196

                       170       180       190
                ....*....|....*....|....*....|....*....
gi 23344946 704 VRnglDTEIDIQRTIQMVRSQRSGLVQTEAQYKFVYYAV 742
Cdd:cd14553 197 KH---EKTVDIYGHVTCLRAQRNYMVQTEDQYIFIHDAL 232
PTPc-N18 cd14603
catalytic domain of tyrosine-protein phosphatase non-receptor type 18; Tyrosine-protein ...
 543-742 3.42e-50

catalytic domain of tyrosine-protein phosphatase non-receptor type 18; Tyrosine-protein phosphatase non-receptor type 18 (PTPN18), also called brain-derived phosphatase, belongs to the family of classical tyrosine-specific protein tyrosine phosphatases (PTPs). PTPs (EC 3.1.3.48) catalyze the dephosphorylation of phosphotyrosine peptides. PTPN18 regulates HER2-mediated cellular functions through defining both its phosphorylation and ubiquitination states. The N-terminal catalytic PTP domain of PTPN18 blocks lysosomal routing and delays the degradation of HER2 by dephosphorylation, and its C-terminal PEST domain promotes K48-linked HER2 ubiquitination and its destruction via the proteasome pathway.


Pssm-ID: 350451 [Multi-domain]  Cd Length: 266  Bit Score: 178.10  E-value: 3.42e-50
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 543 KTYIATQGCLltqqVNTVTDFWNMVWQENTRVIVMTTKEYERGKEKCARYWPDEGRSEQFGHARIQCVSENS-TSDYTLR 621
Cdd:cd14603  73 RAYIATQGPL----SHTVLDFWRMIWQYGVKVILMACREIEMGKKKCERYWAQEQEPLQTGPFTITLVKEKRlNEEVILR 148

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 622 EFLVSWRDQpARRIFHYHFQVWPDHGVPADPGCVLNFLQDVNTRQshlaqaGEKPGPICVHCSAGIGRTGTFIVIDMILD 701
Cdd:cd14603 149 TLKVTFQKE-SRSVSHFQYMAWPDHGIPDSPDCMLAMIELARRLQ------GSGPEPLCVHCSAGCGRTGVICTVDYVRQ 221

                       170       180       190       200
                ....*....|....*....|....*....|....*....|.
gi 23344946 702 QIVRNGLDTEIDIQRTIQMVRSQRSGLVQTEAQYKFVYYAV 742
Cdd:cd14603 222 LLLTQRIPPDFSIFDVVLEMRKQRPAAVQTEEQYEFLYHTV 262
PTPc-N1_2 cd14545
catalytic domain of tyrosine-protein phosphatase non-receptor type 1 and type 2; ...
 543-739 7.60e-50

catalytic domain of tyrosine-protein phosphatase non-receptor type 1 and type 2; Tyrosine-protein phosphatase non-receptor type 1 (PTPN1) type 2 (PTPN2) belong to the family of classical tyrosine-specific protein tyrosine phosphatases, (PTPs). PTPs (EC 3.1.3.48) catalyze the dephosphorylation of phosphotyrosine peptides. PTPN1 (or PTP-1B) is the first PTP to be purified and characterized and is the prototypical intracellular PTP found in a wide variety of human tissues. It dephosphorylates and regulates the activity of a number of receptor tyrosine kinases, including the insulin receptor, the EGF receptor, and the PDGF receptor. PTPN2 (or TCPTP), a tumor suppressor, dephosphorylates and inactivates EGFRs, Src family kinases, Janus-activated kinases (JAKs)-1 and -3, and signal transducer and activators of transcription (STATs)-1, -3 and -5, in a cell type and context-dependent manner.


Pssm-ID: 350393 [Multi-domain]  Cd Length: 231  Bit Score: 176.04  E-value: 7.60e-50
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 543 KTYIATQGCLltqqVNTVTDFWNMVWQENTRVIVMTTKEYERGKEKCARYWP-DEGRSEQFGHARIQC--VSENSTSDYT 619
Cdd:cd14545  39 RSYILTQGPL----PNTSGHFWQMVWEQNSKAVIMLNKLMEKGQIKCAQYWPqGEGNAMIFEDTGLKVtlLSEEDKSYYT 114

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 620 LREF-LVSWRDQPARRIFHYHFQVWPDHGVPADPGCVLNFLQDVntRQSHLAQAGEkpGPICVHCSAGIGRTGTFIVIDM 698
Cdd:cd14545 115 VRTLeLENLKTQETREVLHFHYTTWPDFGVPESPAAFLNFLQKV--RESGSLSSDV--GPPVVHCSAGIGRSGTFCLVDT 190

                       170       180       190       200
                ....*....|....*....|....*....|....*....|.
gi 23344946 699 ILDQIVRNGLDtEIDIQRTIQMVRSQRSGLVQTEAQYKFVY 739
Cdd:cd14545 191 CLVLIEKGNPS-SVDVKKVLLEMRKYRMGLIQTPDQLRFSY 230
R-PTP-LAR-2 cd14554
PTP-like domain of the LAR family receptor-type tyrosine-protein phosphatases, repeat 2; The ...
 543-741 1.08e-49

PTP-like domain of the LAR family receptor-type tyrosine-protein phosphatases, repeat 2; The LAR (leukocyte common antigen-related) family of receptor-type tyrosine-protein phosphatases (RPTPs) include three vertebrate members: LAR (or PTPRF), R-PTP-delta (or PTPRD), and R-PTP-sigma (or PTPRS). They belong to the larger family of classical tyrosine-specific protein tyrosine phosphatases (PTPs). PTPs (EC 3.1.3.48) catalyze the dephosphorylation of phosphotyrosine peptides. LAR-RPTPs are synaptic adhesion molecules; they bind to distinct synaptic membrane proteins and are physiologically responsible for mediating presynaptic development by shaping various synaptic adhesion pathways. They play roles in various aspects of neuronal development, including axon guidance, neurite extension, and synapse formation and function. LAR-RPTPs contain an extracellular region with three immunoglobulin-like (Ig) domains and four to eight fibronectin type III (FN3) repeats (determined by alternative splicing), a single transmembrane domain, followed by an intracellular region with a membrane-proximal catalytic PTP domain (repeat 1, also called D1) and a membrane-distal non-catalytic PTP-like domain (repeat 2, also called D2). This model represents the non-catalytic PTP-like domain (repeat 2).


Pssm-ID: 350402 [Multi-domain]  Cd Length: 238  Bit Score: 175.79  E-value: 1.08e-49
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 543 KTYIATQGCLltqqVNTVTDFWNMVWQENTRVIVMTTKEYERGKEKCARYWPDEgRSEQFGHARIQCVSENSTSDYTLRE 622
Cdd:cd14554  49 GAYIATQGPL----AETTEDFWRMLWEHNSTIIVMLTKLREMGREKCHQYWPAE-RSARYQYFVVDPMAEYNMPQYILRE 123

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 623 FLVS-WRDQPARRIFHYHFQVWPDHGVPADPGCVLNFLQDVntrQSHLAQAGEKpGPICVHCSAGIGRTGTFIVIDMILD 701
Cdd:cd14554 124 FKVTdARDGQSRTVRQFQFTDWPEQGVPKSGEGFIDFIGQV---HKTKEQFGQE-GPITVHCSAGVGRTGVFITLSIVLE 199

                       170       180       190       200
                ....*....|....*....|....*....|....*....|
gi 23344946 702 QIVRNGLdteIDIQRTIQMVRSQRSGLVQTEAQYKFVYYA 741
Cdd:cd14554 200 RMRYEGV---VDVFQTVKLLRTQRPAMVQTEDQYQFCYRA 236
R-PTPc-typeIIb-1 cd14555
catalytic domain of type IIb (or R2B) subfamily receptor-type tyrosine-protein phosphatases, ...
 545-742 1.22e-49

catalytic domain of type IIb (or R2B) subfamily receptor-type tyrosine-protein phosphatases, repeat 1; The type II (or R2B) subfamily of receptor protein tyrosine phosphatases (RPTPs) include the prototypical member PTPmu (or PTPRM), PCP-2 (or PTPRU), PTPrho (or PTPRT), and PTPkappa (or PTPRK). They belong to the larger family of classical tyrosine-specific protein tyrosine phosphatases (PTPs). PTPs (EC 3.1.3.48) catalyze the dephosphorylation of phosphotyrosine peptides. Type IIb RPTPs mediate cell-cell adhesion though homophilic interactions; their ligand is an identical molecule on an adjacent cell. No heterophilic interactions between the subfamily members have been observed. They also commonly function as tumor suppressors. They contain an extracellular region with an Meprin-A5 (neuropilin)-mu (MAM) domain, an immunoglobulin (Ig) domain, and four fibronectin type III (FN3) repeats, a transmembrane domain, and an intracellular segment with a juxtamembrane domain similar to the cytoplasmic domain of classical cadherins and two tandem PTP domains. This model represents the first (repeat 1) PTP domain.


Pssm-ID: 350403 [Multi-domain]  Cd Length: 204  Bit Score: 174.33  E-value: 1.22e-49
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 545 YIATQGclltQQVNTVTDFWNMVWQENTRVIVMTTKEYERGKEKCARYWPDEgrSEQFGHARIQCVSENSTSDYTLREFL 624
Cdd:cd14555  16 YIATQG----PMQETVYDFWRMVWQENSASIVMVTNLVEVGRVKCSRYWPDD--TEVYGDIKVTLVETEPLAEYVVRTFA 89

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 625 VSWRDQPARR-IFHYHFQVWPDHGVPADPGCVLNFLQDVNTRQSHLAqagekpGPICVHCSAGIGRTGTFIVIDMILDQI 703
Cdd:cd14555  90 LERRGYHEIReVRQFHFTGWPDHGVPYHATGLLGFIRRVKASNPPSA------GPIVVHCSAGAGRTGCYIVIDIMLDMA 163

                       170       180       190
                ....*....|....*....|....*....|....*....
gi 23344946 704 VRNGLdteIDIQRTIQMVRSQRSGLVQTEAQYKFVYYAV 742
Cdd:cd14555 164 EREGV---VDIYNCVKELRSRRVNMVQTEEQYIFIHDAI 199
PTPc-N21_14 cd14540
catalytic domain of tyrosine-protein phosphatase non-receptor type 21 and type 14; ...
 545-746 3.02e-49

catalytic domain of tyrosine-protein phosphatase non-receptor type 21 and type 14; Tyrosine-protein phosphatase non-receptor type 21 (PTPN21) and type 14 (PTPN14) belong to the family of classical tyrosine-specific protein tyrosine phosphatases (PTPs). PTPs (EC 3.1.3.48) catalyze the dephosphorylation of phosphotyrosine peptides. Both PTPN21 and PTPN14 contain an N-terminal FERM domain and a C-terminal catalytic PTP domain, separated by a long intervening sequence.


Pssm-ID: 350388 [Multi-domain]  Cd Length: 219  Bit Score: 173.80  E-value: 3.02e-49
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 545 YIATQGCLltqqVNTVTDFWNMVWQENTRVIVMTTKEYERGKEKCARYWPDEG---RSEQFGHARIQCVSENSTSDYTLR 621
Cdd:cd14540  18 YIAAQGPL----QNTVGDFWQMVWEQGVYLVVMVTAEEEGGREKCFRYWPTLGgehDALTFGEYKVSTKFSVSSGCYTTT 93

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 622 EFLVswRDQPARR---IFHYHFQVWPDHGVPADPGCVLNFLQDVNTRQSHLAQAG---EKPGPICVHCSAGIGRTGTFIV 695
Cdd:cd14540  94 GLRV--KHTLSGQsrtVWHLQYTDWPDHGCPEDVSGFLDFLEEINSVRRHTNQDVaghNRNPPTLVHCSAGVGRTGVVIL 171

                       170       180       190       200       210
                ....*....|....*....|....*....|....*....|....*....|.
gi 23344946 696 IDMILDQIVRNgldTEIDIQRTIQMVRSQRSGLVQTEAQYKFVYYAVQHYI 746
Cdd:cd14540 172 ADLMLYCLDHN---EELDIPRVLALLRHQRMLLVQTLAQYKFVYNVLIQYL 219
R-PTPc-A-E-2 cd14552
catalytic domain of receptor-type tyrosine-protein phosphatase A and E, repeat 2; ...
 545-743 7.60e-49

catalytic domain of receptor-type tyrosine-protein phosphatase A and E, repeat 2; Receptor-type tyrosine-protein phosphatase A (PTPRA) and E (PTPRE) belong to the family of classical tyrosine-specific protein tyrosine phosphatases (PTPs). PTPs (EC 3.1.3.48) catalyze the dephosphorylation of phosphotyrosine peptides. PTPRA and PTPRE share several functions including regulation of Src family kinases and voltage-gated potassium (Kv) channels. They both contain a small extracellular domain, a transmembrane segment, and an intracellular region containing two tandem catalytic PTP domains. This model represents the second PTP domain (repeat 2).


Pssm-ID: 350400 [Multi-domain]  Cd Length: 202  Bit Score: 172.07  E-value: 7.60e-49
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 545 YIATQGCLLtqqvNTVTDFWNMVWQENTRVIVMTTKEYERGKEKCARYWPDEGrSEQFGHARIQCVSENSTSDYTLREFL 624
Cdd:cd14552  16 YIATQGPLD----HTVEDFWRMIWEWKSCSIVMLTEIKERSQNKCAQYWPEDG-SVSSGDITVELKDQTDYEDYTLRDFL 90

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 625 VSW-RDQPARRIFHYHFQVWPDHGVPADPGCVLNFLQDVNTRQSHLAQagekpGPICVHCSAGIGRTGTFIVIDMILDQI 703
Cdd:cd14552  91 VTKgKGGSTRTVRQFHFHGWPEVGIPDNGKGMIDLIAAVQKQQQQSGN-----HPITVHCSAGAGRTGTFCALSTVLERV 165

                       170       180       190       200
                ....*....|....*....|....*....|....*....|
gi 23344946 704 VRNGLdteIDIQRTIQMVRSQRSGLVQTEAQYKFVYYAVQ 743
Cdd:cd14552 166 KAEGV---LDVFQVVKSLRLQRPHMVQTLEQYEFCYKVVQ 202
R-PTP-N-N2 cd14546
PTP-like domain of receptor-type tyrosine-protein phosphatase-like N and N2; Receptor-type ...
 545-742 1.15e-48

PTP-like domain of receptor-type tyrosine-protein phosphatase-like N and N2; Receptor-type tyrosine-protein phosphatase-like N (PTPRN) and N2 (PTPRN2) belong to the family of classical tyrosine-specific protein tyrosine phosphatases (PTPs). They consist of a large ectodomain that contains a RESP18HD (regulated endocrine-specific protein 18 homology domain), followed by a transmembrane segment, and a single, catalytically-impaired, PTP domain. They are mainly expressed in neuropeptidergic neurons and peptide-secreting endocrine cells, including insulin-producing pancreatic beta-cells, and are involved in involved in the generation, cargo storage, traffic, exocytosis and recycling of insulin secretory granules, as well as in beta-cell proliferation. They also are major autoantigens in type 1 diabetes and are involved in the regulation of insulin secretion.


Pssm-ID: 350394 [Multi-domain]  Cd Length: 208  Bit Score: 171.47  E-value: 1.15e-48
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 545 YIATQGCLltqqVNTVTDFWNMVWQENTRVIVMTTKEYERGKEKCARYWPDEGrSEQFGHARIQCVSENS-TSDYTLREF 623
Cdd:cd14546  17 YIATQGPL----PHTIADFWQMIWEQGCVVIVMLTRLQENGVKQCARYWPEEG-SEVYHIYEVHLVSEHIwCDDYLVRSF 91

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 624 -LVSWRDQPARRIFHYHFQVWPDHGVPADPGCVLNFLQDVNtrQSHLAQAgekpGPICVHCSAGIGRTGTFIVIDMILDQ 702
Cdd:cd14546  92 yLKNLQTSETRTVTQFHFLSWPDEGIPASAKPLLEFRRKVN--KSYRGRS----CPIVVHCSDGAGRTGTYILIDMVLNR 165

                       170       180       190       200
                ....*....|....*....|....*....|....*....|
gi 23344946 703 IVRNGldTEIDIQRTIQMVRSQRSGLVQTEAQYKFVYYAV 742
Cdd:cd14546 166 MAKGA--KEIDIAATLEHLRDQRPGMVKTKDQFEFVLTAV 203
PTPc-N22 cd14602
catalytic domain of tyrosine-protein phosphatase non-receptor type 22; Tyrosine-protein ...
 543-742 1.49e-48

catalytic domain of tyrosine-protein phosphatase non-receptor type 22; Tyrosine-protein phosphatase non-receptor type 22 (PTPN22), also called lymphoid phosphatase (LyP), PEST-domain phosphatase (PEP), or hematopoietic cell protein-tyrosine phosphatase 70Z-PEP, belongs to the family of classical tyrosine-specific protein tyrosine phosphatases (PTPs). PTPs (EC 3.1.3.48) catalyze the dephosphorylation of phosphotyrosine peptides. PTPN22 is expressed in hematopoietic cells and it functions as a key regulator of immune homeostasis by inhibiting T-cell receptor signaling through the direct dephosphorylation of Src family kinases (Lck and Fyn), ITAMs of the TCRz/CD3 complex, and other signaling molecules. Mutations in the PTPN22 gene are associated with multiple connective tissue and autoimmune diseases including type 1 diabetes mellitus, rheumatoid arthritis, and systemic lupus erythematosus. PTPN22 contains an N-terminal catalytic PTP domain and four proline-rich regions at the C-terminus.


Pssm-ID: 350450 [Multi-domain]  Cd Length: 234  Bit Score: 172.33  E-value: 1.49e-48
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 543 KTYIATQGCLltqqVNTVTDFWNMVWQENTRVIVMTTKEYERGKEKCARYWPDEGRSE-QFGHARIQCVSENSTSDYTLR 621
Cdd:cd14602  41 RAYIATQGPL----STTLLDFWRMIWEYSVLIIVMACMEFEMGKKKCERYWAEPGEMQlEFGPFSVTCEAEKRKSDYIIR 116

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 622 EFLVSWRDQpARRIFHYHFQVWPDHGVPADPGCVLNFLQDVNTRQSHlaqagEKPgPICVHCSAGIGRTGTFIVIDMILd 701
Cdd:cd14602 117 TLKVKFNSE-TRTIYQFHYKNWPDHDVPSSIDPILELIWDVRCYQED-----DSV-PICIHCSAGCGRTGVICAIDYTW- 188

                       170       180       190       200
                ....*....|....*....|....*....|....*....|..
gi 23344946 702 QIVRNGLDTE-IDIQRTIQMVRSQRSGLVQTEAQYKFVYYAV 742
Cdd:cd14602 189 MLLKDGIIPEnFSVFSLIQEMRTQRPSLVQTKEQYELVYNAV 230
R-PTPc-J cd14615
catalytic domain of receptor-type tyrosine-protein phosphatase J; Receptor-type ...
 543-738 3.26e-48

catalytic domain of receptor-type tyrosine-protein phosphatase J; Receptor-type tyrosine-protein phosphatase J (PTPRJ or R-PTP-J), also known as receptor-type tyrosine-protein phosphatase eta (R-PTP-eta) or density-enhanced phosphatase 1 (DEP-1) OR CD148, belongs to the family of classical tyrosine-specific protein tyrosine phosphatases (PTPs). PTPs (EC 3.1.3.48) catalyze the dephosphorylation of phosphotyrosine peptides. PTPRJ is a member of the R3 subfamily of receptor-type phosphotyrosine phosphatases (RPTP), characterized by a unique modular composition consisting of multiple extracellular fibronectin type III (FN3) repeats (eight in PTPRJ) and a single (most RPTP subtypes have two) cytoplasmic catalytic PTP domain. It is expressed in various cell types including epithelial, hematopoietic, and endothelial cells. It plays a role in cell adhesion, migration, proliferation and differentiation. It dephosphorylates or contributes to the dephosphorylation of various substrates including protein kinases such as FLT3, PDGFRB, MET, RET (variant MEN2A), VEGFR-2, LYN, SRC, MAPK1, MAPK3, and EGFR, as well as PIK3R1 and PIK3R2.


Pssm-ID: 350463 [Multi-domain]  Cd Length: 229  Bit Score: 171.15  E-value: 3.26e-48
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 543 KTYIATQGCLltqqVNTVTDFWNMVWQENTRVIVMTTKEYERGKEKCARYWPDEGrSEQFGHARIQCVSENSTSDYTLRE 622
Cdd:cd14615  39 KEFIAAQGPL----PNTVKDFWRMVWEKNVYAIVMLTKCVEQGRTKCEEYWPSKQ-KKDYGDITVTMTSEIVLPEWTIRD 113

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 623 FLVSWRDQPARR-IFHYHFQVWPDHGVPADPGCVLNFLQDVntrQSHLAQAgEKPGPICVHCSAGIGRTGTFIVIDMILD 701
Cdd:cd14615 114 FTVKNAQTNESRtVRHFHFTSWPDHGVPETTDLLINFRHLV---REYMKQN-PPNSPILVHCSAGVGRTGTFIAIDRLIY 189

                       170       180       190
                ....*....|....*....|....*....|....*..
gi 23344946 702 QIVRnglDTEIDIQRTIQMVRSQRSGLVQTEAQYKFV 738
Cdd:cd14615 190 QIEN---ENVVDVYGIVYDLRMHRPLMVQTEDQYVFL 223
PTPc-N12 cd14604
catalytic domain of tyrosine-protein phosphatase non-receptor type 12; Tyrosine-protein ...
 543-747 3.58e-48

catalytic domain of tyrosine-protein phosphatase non-receptor type 12; Tyrosine-protein phosphatase non-receptor type 12 (PTPN12), also called PTP-PEST or protein-tyrosine phosphatase G1 (PTPG1), belongs to the family of classical tyrosine-specific protein tyrosine phosphatases (PTPs). PTPs (EC 3.1.3.48) catalyze the dephosphorylation of phosphotyrosine peptides. PTPN12 is characterized as a tumor suppressor and a pivotal regulator of EGFR/HER2 signaling. It regulates various physiological processes, including cell migration, immune response, and neuronal activity, by dephosphorylating multiple substrates including HER2, FAK, PYK2, PSTPIP, WASP, p130Cas, paxillin, Shc, catenin, c-Abl, ArgBP2, p190RhoGAP, RhoGDI, cell adhesion kinase beta, and Rho GTPase.


Pssm-ID: 350452 [Multi-domain]  Cd Length: 297  Bit Score: 173.58  E-value: 3.58e-48
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 543 KTYIATQGCLltqqVNTVTDFWNMVWQENTRVIVMTTKEYERGKEKCARYWPDEGRSE-QFGHARIQCVSENSTSDYTLR 621
Cdd:cd14604 100 KAYIATQGPL----ANTVIDFWRMIWEYNVAIIVMACREFEMGRKKCERYWPLYGEEPmTFGPFRISCEAEQARTDYFIR 175

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 622 EFLVSWrDQPARRIFHYHFQVWPDHGVPADPGCVLNFLQDVNTRQSHlaqageKPGPICVHCSAGIGRTGTFIVIDMILD 701
Cdd:cd14604 176 TLLLEF-QNETRRLYQFHYVNWPDHDVPSSFDSILDMISLMRKYQEH------EDVPICIHCSAGCGRTGAICAIDYTWN 248

                       170       180       190       200
                ....*....|....*....|....*....|....*....|....*.
gi 23344946 702 QIVRNGLDTEIDIQRTIQMVRSQRSGLVQTEAQYKFVYYAVQHYIQ 747
Cdd:cd14604 249 LLKAGKIPEEFNVFNLIQEMRTQRHSAVQTKEQYELVHRAIAQLFE 294
R-PTPc-B cd14617
catalytic domain of receptor-type tyrosine-protein phosphatase B; Receptor-type ...
 543-739 3.91e-48

catalytic domain of receptor-type tyrosine-protein phosphatase B; Receptor-type tyrosine-protein phosphatase B (PTPRB), also known as receptor-type tyrosine-protein phosphatase beta (R-PTP-beta) or vascular endothelial protein tyrosine phosphatase(VE-PTP), belongs to the family of classical tyrosine-specific protein tyrosine phosphatases (PTPs). PTPs (EC 3.1.3.48) catalyze the dephosphorylation of phosphotyrosine peptides. PTPRB/VE-PTP is a member of the R3 subfamily of receptor-type phosphotyrosine phosphatases (RPTP), characterized by a unique modular composition consisting of multiple extracellular fibronectin type III (FN3) repeats and a single (most RPTP subtypes have two) cytoplasmic catalytic PTP domain. It is expressed specifically in vascular endothelial cells and it plays an important role in blood vessel remodeling and angiogenesis.


Pssm-ID: 350465 [Multi-domain]  Cd Length: 228  Bit Score: 170.87  E-value: 3.91e-48
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 543 KTYIATQGCLltqqVNTVTDFWNMVWQENTRVIVMTTKEYERGKEKCARYWPDEGRSEQFGHARIQCVSENSTSDYTLRE 622
Cdd:cd14617  40 REYIATQGPL----PGTKDDFWKMVWEQNVHNIVMVTQCVEKGRVKCDHYWPADQDSLYYGDLIVQMLSESVLPEWTIRE 115

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 623 FLVSWRDQ--PARRIFHYHFQVWPDHGVPADPGCVLNFlqdVNTRQSHLAQAgEKPGPICVHCSAGIGRTGTFIVIDMIL 700
Cdd:cd14617 116 FKICSEEQldAPRLVRHFHYTVWPDHGVPETTQSLIQF---VRTVRDYINRT-PGSGPTVVHCSAGVGRTGTFIALDRIL 191

                       170       180       190
                ....*....|....*....|....*....|....*....
gi 23344946 701 DQIVRNglDTeIDIQRTIQMVRSQRSGLVQTEAQYKFVY 739
Cdd:cd14617 192 QQLDSK--DS-VDIYGAVHDLRLHRVHMVQTECQYVYLH 227
PTPc-N13 cd14597
catalytic domain of tyrosine-protein phosphatase non-receptor type 13; Tyrosine-protein ...
 545-742 6.41e-48

catalytic domain of tyrosine-protein phosphatase non-receptor type 13; Tyrosine-protein phosphatase non-receptor type 13 (PTPN13, also known as PTPL1) belongs to the family of classical tyrosine-specific protein tyrosine phosphatases (PTPs). PTPs (EC 3.1.3.48) catalyze the dephosphorylation of phosphotyrosine peptides. Human PTPN13 is an important regulator of tumor aggressiveness. It regulates breast cancer cell aggressiveness through direct inactivation of Src kinase. In hepatocellular carcinoma, PTPN13 is a tumor suppressor. PTPN13 contains a FERM domain, five PDZ domains, and a C-terminal catalytic PTP domain. With its PDZ domains, PTPN13 has numerous interacting partners that can actively participate in the regulation of its phosphatase activity or can permit direct or indirect recruitment of tyrosine phosphorylated substrates. Its FERM domain is necessary for localization to the membrane.


Pssm-ID: 350445 [Multi-domain]  Cd Length: 234  Bit Score: 170.40  E-value: 6.41e-48
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 545 YIATQGCLLTqqvnTVTDFWNMVWQENTRVIVMTTKEYERGKEKCARYWPDEGRSEQFGHARIQC--VSENSTSDYTLRE 622
Cdd:cd14597  45 YIACQGPLPT----TVADFWQMVWEQKSTVIAMMTQEVEGGKIKCQRYWPEILGKTTMVDNRLQLtlVRMQQLKNFVIRV 120

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 623 F-LVSWRDQPARRIFHYHFQVWPDHGVPADPGCVLNFLQDVntRQSHlaqageKPGPICVHCSAGIGRTGTFIVIDMILD 701
Cdd:cd14597 121 LeLEDIQTREVRHITHLNFTAWPDHDTPSQPEQLLTFISYM--RHIH------KSGPIITHCSAGIGRSGTLICIDVVLG 192

                       170       180       190       200
                ....*....|....*....|....*....|....*....|.
gi 23344946 702 QIVRnglDTEIDIQRTIQMVRSQRSGLVQTEAQYKFVYYAV 742
Cdd:cd14597 193 LISK---DLDFDISDIVRTMRLQRHGMVQTEDQYIFCYQVI 230
R-PTPc-A-E-1 cd14551
catalytic domain of receptor-type tyrosine-protein phosphatase A and E, repeat 1; ...
 545-739 4.24e-47

catalytic domain of receptor-type tyrosine-protein phosphatase A and E, repeat 1; Receptor-type tyrosine-protein phosphatase A (PTPRA) and E (PTPRE) belong to the family of classical tyrosine-specific protein tyrosine phosphatases (PTPs). PTPs (EC 3.1.3.48) catalyze the dephosphorylation of phosphotyrosine peptides. PTPRA and PTPRE share several functions including regulation of Src family kinases and voltage-gated potassium (Kv) channels. They both contain a small extracellular domain, a transmembrane segment, and an intracellular region containing two tandem catalytic PTP domains. This model represents the first catalytic PTP domain (repeat 1).


Pssm-ID: 350399 [Multi-domain]  Cd Length: 202  Bit Score: 167.01  E-value: 4.24e-47
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 545 YIATQGclltQQVNTVTDFWNMVWQENTRVIVMTTKEYERGKEKCARYWPDEGrSEQFGHARIQCVSENSTSDYTLREFL 624
Cdd:cd14551  16 FIAAQG----PKDETVNDFWRMIWEQGSATIVMVTNLKERKEKKCSQYWPDQG-CWTYGNLRVRVEDTVVLVDYTTRKFC 90

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 625 VS-----WRDQPARRIFHYHFQVWPDHGVPADPGCVLNFLQDVNTRQSHLAqagekpGPICVHCSAGIGRTGTFIVIDMI 699
Cdd:cd14551  91 IQkvnrgIGEKRVRLVTQFHFTSWPDFGVPFTPIGMLKFLKKVKSANPPRA------GPIVVHCSAGVGRTGTFIVIDAM 164

                       170       180       190       200
                ....*....|....*....|....*....|....*....|
gi 23344946 700 LDQIVRNGldtEIDIQRTIQMVRSQRSGLVQTEAQYKFVY 739
Cdd:cd14551 165 LDMMHAEG---KVDVFGFVSRIRQQRSQMVQTDMQYVFIY 201
R-PTP-D-2 cd14628
PTP-like domain of receptor-type tyrosine-protein phosphatase D, repeat 2; Receptor-type ...
 543-746 6.17e-46

PTP-like domain of receptor-type tyrosine-protein phosphatase D, repeat 2; Receptor-type tyrosine-protein phosphatase-like D (PTPRD), also known as receptor-type tyrosine-protein phosphatase delta (R-PTP-delta), belongs to the LAR (leukocyte common antigen-related) family of receptor-type tyrosine-protein phosphatases (RPTPs), which belong to the larger family of classical tyrosine-specific protein tyrosine phosphatases (PTPs). PTPs (EC 3.1.3.48) catalyze the dephosphorylation of phosphotyrosine peptides. LAR-RPTPs are synaptic adhesion molecules that play roles in various aspects of neuronal development, including axon guidance, neurite extension, and synapse formation and function. PTPRD is involved in pre-synaptic differentiation through interaction with SLITRK2. It contains an extracellular region with three immunoglobulin-like (Ig) domains and four to eight fibronectin type III (FN3) repeats (determined by alternative splicing), a single transmembrane domain, followed by an intracellular region with a membrane-proximal catalytic PTP domain (repeat 1, also called D1) and a membrane-distal non-catalytic PTP-like domain (repeat 2, also called D2). This model represents the non-catalytic PTP-like domain (repeat 2). Although described as non-catalytic, this domain contains the catalytic cysteine and the active site signature motif, HCSAGxGRxG.


Pssm-ID: 350476 [Multi-domain]  Cd Length: 292  Bit Score: 166.83  E-value: 6.17e-46
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 543 KTYIATQGCLltqqVNTVTDFWNMVWQENTRVIVMTTKEYERGKEKCARYWPDEgRSEQFGHARIQCVSENSTSDYTLRE 622
Cdd:cd14628  95 KAYIATQGPL----AETTEDFWRMLWEHNSTIVVMLTKLREMGREKCHQYWPAE-RSARYQYFVVDPMAEYNMPQYILRE 169

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 623 FLVS-WRDQPARRIFHYHFQVWPDHGVPADPGCVLNFLQDVNTRQSHLAQagekPGPICVHCSAGIGRTGTFIVIDMILD 701
Cdd:cd14628 170 FKVTdARDGQSRTVRQFQFTDWPEQGVPKSGEGFIDFIGQVHKTKEQFGQ----DGPISVHCSAGVGRTGVFITLSIVLE 245

                       170       180       190       200
                ....*....|....*....|....*....|....*....|....*
gi 23344946 702 QIVRNGLdteIDIQRTIQMVRSQRSGLVQTEAQYKFVYYAVQHYI 746
Cdd:cd14628 246 RMRYEGV---VDIFQTVKMLRTQRPAMVQTEDQYQFCYRAALEYL 287
R-PTPc-U-1 cd14632
catalytic domain of receptor-type tyrosine-protein phosphatase U, repeat 1; Receptor-type ...
 545-742 1.08e-45

catalytic domain of receptor-type tyrosine-protein phosphatase U, repeat 1; Receptor-type tyrosine-protein phosphatase U (PTPRU), also known as pancreatic carcinoma phosphatase 2 (PCP-2), belongs to the type IIb subfamily of receptor protein tyrosine phosphatases (RPTPs), which belong to the larger family of classical tyrosine-specific protein tyrosine phosphatases (PTPs). PTPs (EC 3.1.3.48) catalyze the dephosphorylation of phosphotyrosine peptides. PTPRU/PCP-2 is the most distant member of the type IIb subfamily and may have a distinct biological function other than cell-cell aggregation. It localizes to the adherens junctions and directly binds and dephosphorylates beta-catenin, and regulates the balance between signaling and adhesive beta-catenin. It plays an important role in the maintenance of epithelial integrity. PTPRU contains an extracellular region with an Meprin-A5 (neuropilin)-mu (MAM) domain, an immunoglobulin (Ig) domain, and four fibronectin type III (FN3) repeats, a transmembrane domain, and an intracellular segment with a juxtamembrane domain similar to the cytoplasmic domain of classical cadherins and two tandem PTP domains. This model represents the first (repeat 1) PTP domain.


Pssm-ID: 350480 [Multi-domain]  Cd Length: 205  Bit Score: 163.30  E-value: 1.08e-45
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 545 YIATQGclltQQVNTVTDFWNMVWQENTRVIVMTTKEYERGKEKCARYWPDEgrSEQFGHARIQCVSENSTSDYTLREFL 624
Cdd:cd14632  16 FIATQG----PKQEMVYDFWRMVWQEHCSSIVMITKLVEVGRVKCSKYWPDD--SDTYGDIKITLLKTETLAEYSVRTFA 89

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 625 VSWRDQPAR-RIFHYHFQVWPDHGVPADPGCVLNFLQDVNTRQSHLAqagekpGPICVHCSAGIGRTGTFIVIDMILDQI 703
Cdd:cd14632  90 LERRGYSARhEVKQFHFTSWPEHGVPYHATGLLAFIRRVKASTPPDA------GPVVVHCSAGAGRTGCYIVLDVMLDMA 163

                       170       180       190
                ....*....|....*....|....*....|....*....
gi 23344946 704 VRNGLdteIDIQRTIQMVRSQRSGLVQTEAQYKFVYYAV 742
Cdd:cd14632 164 ECEGV---VDIYNCVKTLCSRRINMIQTEEQYIFIHDAI 199
R-PTPc-O cd14614
catalytic domain of receptor-type tyrosine-protein phosphatase O; Receptor-type ...
 545-743 1.08e-45

catalytic domain of receptor-type tyrosine-protein phosphatase O; Receptor-type tyrosine-protein phosphatase O (PTPRO or R-PTP-O), also known as glomerular epithelial protein 1 or protein tyrosine phosphatase U2 (PTP-U2), belongs to the family of classical tyrosine-specific protein tyrosine phosphatases (PTPs). PTPs (EC 3.1.3.48) catalyze the dephosphorylation of phosphotyrosine peptides. PTPRO is a member of the R3 subfamily of receptor-type phosphotyrosine phosphatases (RPTP), characterized by a unique modular composition consisting of multiple extracellular fibronectin type III (FN3) repeats and a single (most RPTP subtypes have two) cytoplasmic catalytic PTP domain. It is essential for sustaining the structure and function of foot processes by regulating tyrosine phosphorylation of podocyte proteins. It has been identified as a synaptic cell adhesion molecule (CAM) that serves as a potent initiator of synapse formation. It is also a tumor suppressor in several types of cancer, such as hepatocellular carcinoma, lung cancer, and breast cancer.


Pssm-ID: 350462 [Multi-domain]  Cd Length: 245  Bit Score: 164.68  E-value: 1.08e-45
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 545 YIATQGCLltqqVNTVTDFWNMVWQENTRVIVMTTKEYERGKEKCARYWPDEGRSEQFGHARIQCVSENSTSDYTLREFL 624
Cdd:cd14614  57 YIATQGPL----PETRNDFWKMVLQQKSQIIVMLTQCNEKRRVKCDHYWPFTEEPVAYGDITVEMLSEEEQPDWAIREFR 132

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 625 VSWRDQpARRIFHYHFQVWPDHGVPADPGC--VLNFLQDVntRQshlaQAGEKPGPICVHCSAGIGRTGTFIVIDMILDQ 702
Cdd:cd14614 133 VSYADE-VQDVMHFNYTAWPDHGVPTANAAesILQFVQMV--RQ----QAVKSKGPMIIHCSAGVGRTGTFIALDRLLQH 205

                       170       180       190       200
                ....*....|....*....|....*....|....*....|..
gi 23344946 703 IvrngLDTE-IDIQRTIQMVRSQRSGLVQTEAQYKFVYYAVQ 743
Cdd:cd14614 206 I----RDHEfVDILGLVSEMRSYRMSMVQTEEQYIFIHQCVQ 243
R-PTPc-H cd14619
catalytic domain of receptor-type tyrosine-protein phosphatase H; Receptor-type ...
 543-739 1.11e-45

catalytic domain of receptor-type tyrosine-protein phosphatase H; Receptor-type tyrosine-protein phosphatase H (PTPRH or R-PTP-H), also known as stomach cancer-associated protein tyrosine phosphatase 1 (SAP-1), belongs to the family of classical tyrosine-specific protein tyrosine phosphatases (PTPs). PTPs (EC 3.1.3.48) catalyze the dephosphorylation of phosphotyrosine peptides. PTPRH is a member of the R3 subfamily of receptor-type phosphotyrosine phosphatases (RPTP), characterized by a unique modular composition consisting of multiple extracellular fibronectin type III (FN3) repeats and a single (most RPTP subtypes have two) cytoplasmic catalytic PTP domain. It is localized specifically at microvilli of the brush border in gastrointestinal epithelial cells. It plays a role in intestinal immunity by regulating CEACAM20 through tyrosine dephosphorylation. It is also a negative regulator of integrin-mediated signaling and may contribute to contact inhibition of cell growth and motility.


Pssm-ID: 350467 [Multi-domain]  Cd Length: 233  Bit Score: 164.29  E-value: 1.11e-45
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 543 KTYIATQGCLltqqVNTVTDFWNMVWQENTRVIVMTTKEYERGKEKCARYWPDEGRSEQFGHARIQCVSENSTSDYTLRE 622
Cdd:cd14619  40 QEFIATQGPL----PQTVGDFWRMIWEQQSSTIVMLTNCMEAGRVKCEHYWPLDYTPCTYGHLRVTVVSEEVMENWTVRE 115

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 623 FLV-SWRDQPARRIFHYHFQVWPDHGVPADPGCVLNFLQDVntRQsHLAQAGEKpGPICVHCSAGIGRTGTFIVIDMILD 701
Cdd:cd14619 116 FLLkQVEEQKTLSVRHFHFTAWPDHGVPSSTDTLLAFRRLL--RQ-WLDQTMSG-GPTVVHCSAGVGRTGTLIALDVLLQ 191

                       170       180       190
                ....*....|....*....|....*....|....*...
gi 23344946 702 QIVRNGLdteIDIQRTIQMVRSQRSGLVQTEAQYKFVY 739
Cdd:cd14619 192 QLQSEGL---LGPFSFVQKMRENRPLMVQTESQYVFLH 226
R-PTP-S-2 cd14627
PTP-like domain of receptor-type tyrosine-protein phosphatase S, repeat 2; Receptor-type ...
 543-746 1.69e-45

PTP-like domain of receptor-type tyrosine-protein phosphatase S, repeat 2; Receptor-type tyrosine-protein phosphatase S (PTPRS), also known as receptor-type tyrosine-protein phosphatase sigma (R-PTP-sigma), belongs to the LAR (leukocyte common antigen-related) family of receptor-type tyrosine-protein phosphatases (RPTPs), which belong to the larger family of classical tyrosine-specific protein tyrosine phosphatases (PTPs). PTPs (EC 3.1.3.48) catalyze the dephosphorylation of phosphotyrosine peptides. PTPRS is a receptor for glycosaminoglycans, including heparan sulfate proteoglycan and neural chondroitin sulfate proteoglycans (CSPGs), which present a barrier to axon regeneration. It also plays a role in stimulating neurite outgrowth in response to the heparan sulfate proteoglycan GPC2. PTPRS contains an extracellular region with three immunoglobulin-like (Ig) domains and four to eight fibronectin type III (FN3) repeats (determined by alternative splicing), a single transmembrane domain, followed by an intracellular region with a membrane-proximal catalytic PTP domain (repeat 1, also called D1) and a membrane-distal non-catalytic PTP-like domain (repeat 2, also called D2). This model represents the non-catalytic PTP-like domain (repeat 2). Although described as non-catalytic, this domain contains the catalytic cysteine and the active site signature motif, HCSAGxGRxG.


Pssm-ID: 350475 [Multi-domain]  Cd Length: 290  Bit Score: 165.68  E-value: 1.69e-45
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 543 KTYIATQGCLltqqVNTVTDFWNMVWQENTRVIVMTTKEYERGKEKCARYWPDEgRSEQFGHARIQCVSENSTSDYTLRE 622
Cdd:cd14627  96 KAYIATQGPL----AETTEDFWRMLWENNSTIVVMLTKLREMGREKCHQYWPAE-RSARYQYFVVDPMAEYNMPQYILRE 170

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 623 FLVS-WRDQPARRIFHYHFQVWPDHGVPADPGCVLNFLQDVNTRQSHLAQagekPGPICVHCSAGIGRTGTFIVIDMILD 701
Cdd:cd14627 171 FKVTdARDGQSRTVRQFQFTDWPEQGVPKSGEGFIDFIGQVHKTKEQFGQ----DGPISVHCSAGVGRTGVFITLSIVLE 246

                       170       180       190       200
                ....*....|....*....|....*....|....*....|....*
gi 23344946 702 QIVRNGLdteIDIQRTIQMVRSQRSGLVQTEAQYKFVYYAVQHYI 746
Cdd:cd14627 247 RMRYEGV---VDIFQTVKMLRTQRPAMVQTEDEYQFCYQAALEYL 288
R-PTPc-Z-1 cd17668
catalytic domain of receptor-type tyrosine-protein phosphatase Z, repeat 1; Receptor-type ...
 543-742 3.86e-45

catalytic domain of receptor-type tyrosine-protein phosphatase Z, repeat 1; Receptor-type tyrosine-protein phosphatase Z (PTPRZ), also called receptor-type tyrosine-protein phosphatase zeta (R-PTP-zeta), belongs to the family of classical tyrosine-specific protein tyrosine phosphatases (PTPs). PTPs (EC 3.1.3.48) catalyze the dephosphorylation of phosphotyrosine peptides. Three isoforms are generated by alternative splicing from a single PTPRZ gene: two transmembrane isoforms, PTPRZ-A and PTPRZ-B, and one secretory isoform, PTPRZ-S (also known as phosphacan); all are preferentially expressed in the central nervous system (CNS) as chondroitin sulfate (CS) proteoglycans. PTPRZ isoforms play important roles in maintaining oligodendrocyte precursor cells in an undifferentiated state. PTPRZ is a type 1 integral membrane protein consisting of an extracellular region with a carbonic anhydrase-like (CAH) and a fibronectin type III (FN3) domains, and an intracellular region with a catalytic PTP domain (repeat 1) proximal to the membrane, and a catalytically inactive PTP-fold domain (repeat 2) distal to the membrane. This model represents the catalytic PTP domain (repeat 1).


Pssm-ID: 350506 [Multi-domain]  Cd Length: 209  Bit Score: 161.68  E-value: 3.86e-45
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 543 KTYIATQGCLLTqqvnTVTDFWNMVWQENTRVIVMTTKEYERGKEKCARYWPDEGrSEQFGHARIQCVSENSTSDYTLRE 622
Cdd:cd17668  14 KAYIAAQGPLKS----TAEDFWRMIWEHNVEVIVMITNLVEKGRRKCDQYWPADG-SEEYGNFLVTQKSVQVLAYYTVRN 88

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 623 FLV--------SWRDQPARRIF-HYHFQVWPDHGVPADPGCVLNFLqdvntRQSHLAQAGEKpGPICVHCSAGIGRTGTF 693
Cdd:cd17668  89 FTLrntkikkgSQKGRPSGRVVtQYHYTQWPDMGVPEYTLPVLTFV-----RKASYAKRHAV-GPVVVHCSAGVGRTGTY 162

                       170       180       190       200
                ....*....|....*....|....*....|....*....|....*....
gi 23344946 694 IVIDMILDQIVRNGldtEIDIQRTIQMVRSQRSGLVQTEAQYKFVYYAV 742
Cdd:cd17668 163 IVLDSMLQQIQHEG---TVNIFGFLKHIRSQRNYLVQTEEQYVFIHDAL 208
PTPc-N1 cd14608
catalytic domain of tyrosine-protein phosphatase non-receptor type 1; Tyrosine-protein ...
 515-758 4.56e-45

catalytic domain of tyrosine-protein phosphatase non-receptor type 1; Tyrosine-protein phosphatase non-receptor type 1 (PTPN1), also called protein-tyrosine phosphatase 1B (PTP-1B), belongs to the family of classical tyrosine-specific protein tyrosine phosphatases (PTPs). PTPs (EC 3.1.3.48) catalyze the dephosphorylation of phosphotyrosine peptides. PTPN1/PTP-1B is the first PTP to be purified and characterized and is the prototypical intracellular PTP found in a wide variety of human tissues. It contains an N-terminal catalytic PTP domain, followed by two tandem proline-rich motifs that mediate interaction with SH3-domain-containing proteins, and a small hydrophobic stretch that localizes the enzyme to the endoplasmic reticulum (ER). It dephosphorylates and regulates the activity of a number of receptor tyrosine kinases, including the insulin receptor, the EGF receptor, and the PDGF receptor.


Pssm-ID: 350456 [Multi-domain]  Cd Length: 277  Bit Score: 164.04  E-value: 4.56e-45
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 515 LKRHSNDSSGAVSISMAERErereremfKTYIATQGCLltqqVNTVTDFWNMVWQENTRVIVMTTKEYERGKEKCARYWP 594
Cdd:cd14608  44 LHQEDNDYINASLIKMEEAQ--------RSYILTQGPL----PNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWP 111

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 595 DEGRSEQF---GHARIQCVSENSTSDYTLREF-LVSWRDQPARRIFHYHFQVWPDHGVPADPGCVLNFLQDVntRQShlA 670
Cdd:cd14608 112 QKEEKEMIfedTNLKLTLISEDIKSYYTVRQLeLENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFKV--RES--G 187

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 671 QAGEKPGPICVHCSAGIGRTGTFIVIDMILDQIVRNGLDTEIDIQRTIQMVRSQRSGLVQTEAQYKFVYYAVQHYIQTLI 750
Cdd:cd14608 188 SLSPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIEGAKFIM 267


                ....*...
gi 23344946 751 ARKRAEEQ 758
Cdd:cd14608 268 GDSSVQDQ 275
R-PTPc-E-1 cd14620
catalytic domain of receptor-type tyrosine-protein phosphatase E, repeat 1; Receptor-type ...
 545-742 4.92e-45

catalytic domain of receptor-type tyrosine-protein phosphatase E, repeat 1; Receptor-type tyrosine-protein phosphatase E (PTPRE), also known as receptor-type tyrosine-protein phosphatase epsilon (R-PTP-epsilon), belongs to the family of classical tyrosine-specific protein tyrosine phosphatases (PTPs). PTPs (EC 3.1.3.48) catalyze the dephosphorylation of phosphotyrosine peptides. The PTPRE gene contains two distinct promoters that generate the two major isoforms: transmembrane (receptor type RPTPe or PTPeM) and cytoplasmic (cyt-PTPe or PTPeC). Receptor type RPTPe plays a critical role in signaling transduction pathways and phosphoprotein network topology in red blood cells, and may also play a role in osteoclast formation and function. It also negatively regulates PDGFRbeta-mediated signaling pathways that are crucial for the pathogenesis of atherosclerosis. cyt-PTPe acts as a negative regulator of insulin receptor signaling in skeletal muscle. It regulates insulin-induced phosphorylation of proteins downstream of the insulin receptor. Receptor type RPTPe contains a small extracellular region, a single transmembrane segment, and an intracellular region two tandem catalytic PTP domains. This model represents the first PTP domain (repeat 1).


Pssm-ID: 350468 [Multi-domain]  Cd Length: 229  Bit Score: 162.03  E-value: 4.92e-45
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 545 YIATQGclltQQVNTVTDFWNMVWQENTRVIVMTTKEYERGKEKCARYWPDEGrSEQFGHARIQCVSENSTSDYTLREFL 624
Cdd:cd14620  40 FIAAQG----PKQETVNDFWRMVWEQKSATIVMLTNLKERKEEKCYQYWPDQG-CWTYGNIRVAVEDCVVLVDYTIRKFC 114

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 625 VSWR----DQPARRIFHYHFQVWPDHGVPADPGCVLNFLQDVNTRQSHLAqagekpGPICVHCSAGIGRTGTFIVIDMIL 700
Cdd:cd14620 115 IQPQlpdgCKAPRLVTQLHFTSWPDFGVPFTPIGMLKFLKKVKSVNPVHA------GPIVVHCSAGVGRTGTFIVIDAMI 188

                       170       180       190       200
                ....*....|....*....|....*....|....*....|..
gi 23344946 701 DQIVRNGldtEIDIQRTIQMVRSQRSGLVQTEAQYKFVYYAV 742
Cdd:cd14620 189 DMMHAEQ---KVDVFEFVSRIRNQRPQMVQTDMQYSFIYQAL 227
PTPc-N7 cd14612
catalytic domain of tyrosine-protein phosphatase non-receptor type 7; Tyrosine-protein ...
 543-745 5.50e-45

catalytic domain of tyrosine-protein phosphatase non-receptor type 7; Tyrosine-protein phosphatase non-receptor type 7 (PTPN7), also called hematopoietic protein-tyrosine phosphatase (HePTP) or LC-PTP. belongs to the family of classical tyrosine-specific protein tyrosine phosphatases (PTPs). PTPs (EC 3.1.3.48) catalyze the dephosphorylation of phosphotyrosine peptides. PTPN7/HePTP is a kinase interaction motif (KIM)-PTP, characterized by the presence of a 16-amino-acid KIM that binds specifically to members of the MAPK (mitogen-activated protein kinase) family. PTPN7/HePTP is found exclusively in the white blood cells in bone marrow, thymus, spleen, lymph nodes and all myeloid and lymphoid cell lines. It negatively regulates T-cell activation and proliferation, and is often dysregulated in the preleukemic disorder myelodysplastic syndrome, as well as in acute myelogenous leukemia.


Pssm-ID: 350460 [Multi-domain]  Cd Length: 247  Bit Score: 162.70  E-value: 5.50e-45
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 543 KTYIATQGCLLtqqvNTVTDFWNMVWQENTRVIVMTTKEYERgKEKCARYWPD-EGRSEQFGhARIQCVSEnsTSDYTLR 621
Cdd:cd14612  60 KAYIATQGPML----NTVSDFWEMVWQEECPIIVMITKLKEK-KEKCVHYWPEkEGTYGRFE-IRVQDMKE--CDGYTIR 131

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 622 EFLVSWRDQpARRIFHYHFQVWPDHGVPADPGCVLNFLQDVNTRQshlaQAGEKPGPICVHCSAGIGRTGTFIVIDMILD 701
Cdd:cd14612 132 DLTIQLEEE-SRSVKHYWFSSWPDHQTPESAGPLLRLVAEVEESR----QTAASPGPIVVHCSAGIGRTGCFIATSIGCQ 206

                       170       180       190       200
                ....*....|....*....|....*....|....*....|....
gi 23344946 702 QIVRNGldtEIDIQRTIQMVRSQRSGLVQTEAQYKFVYYAVQHY 745
Cdd:cd14612 207 QLKDTG---KVDILGIVCQLRLDRGGMIQTSEQYQFLHHTLALY 247
R-PTPc-K-1 cd14631
catalytic domain of receptor-type tyrosine-protein phosphatase K, repeat 1; Receptor-type ...
 545-742 1.01e-44

catalytic domain of receptor-type tyrosine-protein phosphatase K, repeat 1; Receptor-type tyrosine-protein phosphatase K (PTPRK), also known as receptor-type tyrosine-protein phosphatase kappa (RPTP-kappa or PTPkappa), belongs to the type IIb subfamily of receptor protein tyrosine phosphatases (RPTPs), which belong to the larger family of classical tyrosine-specific protein tyrosine phosphatases (PTPs). PTPs (EC 3.1.3.48) catalyze the dephosphorylation of phosphotyrosine peptides. PTPRK is widely expressed and has been shown to stimulate cell motility and neurite outgrowth. It is required for anti-proliferative and pro-migratory effects of TGF-beta, suggesting a role in regulation, maintenance, and restoration of cell adhesion. It is a potential tumour suppressor in primary central nervous system lymphomas, colorectal cancer, and breast cancer. It contains an extracellular region with an Meprin-A5 (neuropilin)-mu (MAM) domain, an immunoglobulin (Ig) domain, and four fibronectin type III (FN3) repeats, a transmembrane domain, and an intracellular segment with a juxtamembrane domain similar to the cytoplasmic domain of classical cadherins and two tandem PTP domains. This model represents the first (repeat 1) PTP domain.


Pssm-ID: 350479 [Multi-domain]  Cd Length: 218  Bit Score: 160.96  E-value: 1.01e-44
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 545 YIATQGCLLtqqvNTVTDFWNMVWQENTRVIVMTTKEYERGKEKCARYWPDEgrSEQFGHARIQCVSENSTSDYTLREFL 624
Cdd:cd14631  30 YIATQGPVH----ETVYDFWRMIWQEQSACIVMVTNLVEVGRVKCYKYWPDD--TEVYGDFKVTCVEMEPLAEYVVRTFT 103

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 625 VSWRD-QPARRIFHYHFQVWPDHGVPADPGCVLNFLQDVNTRQSHLAqagekpGPICVHCSAGIGRTGTFIVIDMILDQI 703
Cdd:cd14631 104 LERRGyNEIREVKQFHFTGWPDHGVPYHATGLLSFIRRVKLSNPPSA------GPIVVHCSAGAGRTGCYIVIDIMLDMA 177

                       170       180       190
                ....*....|....*....|....*....|....*....
gi 23344946 704 VRNGLdteIDIQRTIQMVRSQRSGLVQTEAQYKFVYYAV 742
Cdd:cd14631 178 EREGV---VDIYNCVKALRSRRINMVQTEEQYIFIHDAI 213
R-PTPc-G-1 cd17667
catalytic domain of receptor-type tyrosine-protein phosphatase G, repeat 1; Receptor-type ...
 543-746 1.24e-44

catalytic domain of receptor-type tyrosine-protein phosphatase G, repeat 1; Receptor-type tyrosine-protein phosphatase G (PTPRG), also called protein-tyrosine phosphatase gamma (R-PTP-gamma), belongs to the family of classical tyrosine-specific protein tyrosine phosphatases (PTPs). PTPs (EC 3.1.3.48) catalyze the dephosphorylation of phosphotyrosine peptides. PTPRG is an important tumor suppressor gene in multiple human cancers such as lung, ovarian, and breast cancers. It is widely expressed in many tissues, including the central nervous system, where it plays a role during neuroinflammation processes. It can dephosphorylate platelet-derived growth factor receptor beta (PDGFRB) and may play a role in PDGFRB-related infantile myofibromatosis. PTPRG has four splicing isoforms: three transmembrane isoforms, PTPRG-A, B, and C, and one secretory isoform, PTPRG-S, which are expressed in many tissues including the brain. PTPRG is a type 1 integral membrane protein consisting of an extracellular region with a carbonic anhydrase-like (CAH) and a fibronectin type III (FN3) domains, and an intracellular region with a catalytic PTP domain (repeat 1) proximal to the membrane, and a catalytically inactive PTP-fold domain (repeat 2) distal to the membrane. This model represents the catalytic PTP domain (repeat 1).


Pssm-ID: 350505 [Multi-domain]  Cd Length: 274  Bit Score: 162.51  E-value: 1.24e-44
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 543 KTYIATQGCLLTqqvnTVTDFWNMVWQENTRVIVMTTKEYERGKEKCARYWPDEGrSEQFGHARIQCVSENSTSDYTLRE 622
Cdd:cd17667  72 KAYIATQGPLKS----TFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTEN-SEEYGNIIVTLKSTKIHACYTVRR 146

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 623 FLVSWRD------------QPARRIFHYHFQVWPDHGVPADPGCVLNFLqdvntRQSHLAQAGEKpGPICVHCSAGIGRT 690
Cdd:cd17667 147 FSIRNTKvkkgqkgnpkgrQNERTVIQYHYTQWPDMGVPEYALPVLTFV-----RRSSAARTPEM-GPVLVHCSAGVGRT 220

                       170       180       190       200       210
                ....*....|....*....|....*....|....*....|....*....|....*.
gi 23344946 691 GTFIVIDMILDQIVRNGldtEIDIQRTIQMVRSQRSGLVQTEAQYKFVYYAVQHYI 746
Cdd:cd17667 221 GTYIVIDSMLQQIKDKS---TVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAI 273
R-PTPc-T-1 cd14630
catalytic domain of receptor-type tyrosine-protein phosphatase T, repeat 1; Receptor-type ...
 543-742 2.10e-44

catalytic domain of receptor-type tyrosine-protein phosphatase T, repeat 1; Receptor-type tyrosine-protein phosphatase T (PTPRT), also known as receptor-type tyrosine-protein phosphatase rho (RPTP-rho or PTPrho), belongs to the type IIb subfamily of receptor protein tyrosine phosphatases (RPTPs), which belong to the larger family of classical tyrosine-specific protein tyrosine phosphatases (PTPs). PTPs (EC 3.1.3.48) catalyze the dephosphorylation of phosphotyrosine peptides. PTPRT is highly expressed in the nervous system and it plays a critical role in regulation of synaptic formation and neuronal development. It dephosphorylates a specific tyrosine residue in syntaxin-binding protein 1, a key component of synaptic vesicle fusion machinery, and regulates its binding to syntaxin 1. PTPRT has been identified as a potential candidate gene for autism spectrum disorder (ASD) susceptibility. It contains an extracellular region with an Meprin-A5 (neuropilin)-mu (MAM) domain, an immunoglobulin (Ig) domain, and four fibronectin type III (FN3) repeats, a transmembrane domain, and an intracellular segment with a juxtamembrane domain similar to the cytoplasmic domain of classical cadherins and two tandem PTP domains. This model represents the first (repeat 1) PTP domain.


Pssm-ID: 350478 [Multi-domain]  Cd Length: 237  Bit Score: 160.58  E-value: 2.10e-44
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 543 KTYIATQGCLLtqqvNTVTDFWNMVWQENTRVIVMTTKEYERGKEKCARYWPDEgrSEQFGHARIQCVSENSTSDYTLRE 622
Cdd:cd14630  46 RHYIATQGPMQ----ETVKDFWRMIWQENSASVVMVTNLVEVGRVKCVRYWPDD--TEVYGDIKVTLIETEPLAEYVIRT 119

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 623 FLVSWR-DQPARRIFHYHFQVWPDHGVPADPGCVLNFLQDVNTRQSHLAqagekpGPICVHCSAGIGRTGTFIVIDMILD 701
Cdd:cd14630 120 FTVQKKgYHEIREIRQFHFTSWPDHGVPCYATGLLGFVRQVKFLNPPDA------GPIVVHCSAGAGRTGCFIAIDIMLD 193

                       170       180       190       200
                ....*....|....*....|....*....|....*....|.
gi 23344946 702 QIVRNGLdteIDIQRTIQMVRSQRSGLVQTEAQYKFVYYAV 742
Cdd:cd14630 194 MAENEGV---VDIFNCVRELRAQRVNMVQTEEQYVFVHDAI 231
R-PTPc-E-2 cd14622
catalytic domain of receptor-type tyrosine-protein phosphatase E, repeat 2; Receptor-type ...
 545-745 2.41e-44

catalytic domain of receptor-type tyrosine-protein phosphatase E, repeat 2; Receptor-type tyrosine-protein phosphatase E (PTPRE), also known as receptor-type tyrosine-protein phosphatase epsilon (R-PTP-epsilon), belongs to the family of classical tyrosine-specific protein tyrosine phosphatases (PTPs). PTPs (EC 3.1.3.48) catalyze the dephosphorylation of phosphotyrosine peptides. The PTPRE gene contains two distinct promoters that generate the two major isoforms: transmembrane (receptor type RPTPe or PTPeM) and cytoplasmic (cyt-PTPe or PTPeC). Receptor type RPTPe plays a critical role in signaling transduction pathways and phosphoprotein network topology in red blood cells, and may also play a role in osteoclast formation and function. It also negatively regulates PDGFRbeta-mediated signaling pathways that are crucial for the pathogenesis of atherosclerosis. cyt-PTPe acts as a negative regulator of insulin receptor signaling in skeletal muscle. It regulates insulin-induced phosphorylation of proteins downstream of the insulin receptor. Receptor type RPTPe contains a small extracellular region, a single transmembrane segment, and an intracellular region two tandem catalytic PTP domains. This model represents the second PTP domain (repeat 2).


Pssm-ID: 350470 [Multi-domain]  Cd Length: 205  Bit Score: 159.40  E-value: 2.41e-44
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 545 YIATQGCLltqqVNTVTDFWNMVWQENTRVIVMTTKEYERGKEKCARYWPDEGrSEQFGHARIQCVSENSTSDYTLREFL 624
Cdd:cd14622  17 FIATQGPL----AHTVEDFWRMVWEWKCHTIVMLTELQEREQEKCVQYWPSEG-SVTHGEITIEIKNDTLLETISIRDFL 91

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 625 VSW-RDQPARRIFHYHFQVWPDHGVPADPGCVLNFLQDVNTRQShlaQAGEKpgPICVHCSAGIGRTGTFIVIDMILDQI 703
Cdd:cd14622  92 VTYnQEKQTRLVRQFHFHGWPEIGIPAEGKGMIDLIAAVQKQQQ---QTGNH--PIVVHCSAGAGRTGTFIALSNILERV 166

                       170       180       190       200
                ....*....|....*....|....*....|....*....|..
gi 23344946 704 VRNGLdteIDIQRTIQMVRSQRSGLVQTEAQYKFVYYAVQHY 745
Cdd:cd14622 167 KAEGL---LDVFQTVKSLRLQRPHMVQTLEQYEFCYRVVQDF 205
R-PTPc-A-1 cd14621
catalytic domain of receptor-type tyrosine-protein phosphatase A, repeat 1; Receptor-type ...
 545-746 2.87e-44

catalytic domain of receptor-type tyrosine-protein phosphatase A, repeat 1; Receptor-type tyrosine-protein phosphatase A (PTPRA), also known as receptor-type tyrosine-protein phosphatase alpha (R-PTP-alpha), belongs to the family of classical tyrosine-specific protein tyrosine phosphatases (PTPs). PTPs (EC 3.1.3.48) catalyze the dephosphorylation of phosphotyrosine peptides. PTPRA is a positive regulator of Src and Src family kinases via dephosphorylation of the Src-inhibitory tyrosine 527. Thus, it affects transformation and tumorigenesis, inhibition of proliferation, cell cycle arrest, integrin signaling, neuronal differentiation and outgrowth, and ion channel activity. It is also involved in interleukin-1 signaling in fibroblasts through its interaction with the focal adhesion targeting domain of focal adhesion kinase. PTPRA comprises a small extracellular domain, a transmembrane segment, and an intracellular region containing two tandem catalytic PTP domains. This model represents the first catalytic PTP domain (repeat 1).


Pssm-ID: 350469 [Multi-domain]  Cd Length: 296  Bit Score: 162.12  E-value: 2.87e-44
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 545 YIATQGclltQQVNTVTDFWNMVWQENTRVIVMTTKEYERGKEKCARYWPDEGrSEQFGHARIQCVSENSTSDYTLREFL 624
Cdd:cd14621  97 FIAAQG----PKEETVNDFWRMIWEQNTATIVMVTNLKERKECKCAQYWPDQG-CWTYGNIRVSVEDVTVLVDYTVRKFC 171

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 625 VSW-----RDQPARRIFHYHFQVWPDHGVPADPGCVLNFLQDVNTRQSHLAqagekpGPICVHCSAGIGRTGTFIVIDMI 699
Cdd:cd14621 172 IQQvgdvtNKKPQRLITQFHFTSWPDFGVPFTPIGMLKFLKKVKNCNPQYA------GAIVVHCSAGVGRTGTFIVIDAM 245

                       170       180       190       200
                ....*....|....*....|....*....|....*....|....*...
gi 23344946 700 LDQIvrnGLDTEIDIQRTIQMVRSQRSGLVQTEAQYKFVYYA-VQHYI 746
Cdd:cd14621 246 LDMM---HAERKVDVYGFVSRIRAQRCQMVQTDMQYVFIYQAlLEHYL 290
PTPc-N4 cd14601
catalytic domain of tyrosine-protein phosphatase non-receptor type 4; Tyrosine-protein ...
 545-742 7.27e-44

catalytic domain of tyrosine-protein phosphatase non-receptor type 4; Tyrosine-protein phosphatase non-receptor type 4 (PTPN4), also called protein-tyrosine phosphatase MEG1, belongs to the family of classical tyrosine-specific protein tyrosine phosphatases (PTPs). PTPs (EC 3.1.3.48) catalyze the dephosphorylation of phosphotyrosine peptides. PTPN4 functions in TCR cell signaling, apoptosis, cerebellar synaptic plasticity, and innate immune responses. It specifically inhibits the TRIF-dependent TLR4 pathway by suppressing tyrosine phosphorylation of TRAM. It is a large modular protein containing an N-terminal FERM domain, a PDZ domain and a C-terminal catalytic PTP domain; the PDZ domain regulates the catalytic activity of PTPN4.


Pssm-ID: 350449 [Multi-domain]  Cd Length: 212  Bit Score: 158.18  E-value: 7.27e-44
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 545 YIATQGCLltqqVNTVTDFWNMVWQENTRVIVMTTKEYERGKEKCARYWPDEGRSEQFGHARIQCVSENSTSDYTLREF- 623
Cdd:cd14601  21 YIACQGPL----PNTCSDFWQMTWEQGSSMVVMLTTQVERGRVKCHQYWPEPSGSSSYGGFQVTCHSEEGNPAYVFREMt 96

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 624 LVSWRDQPARRIFHYHFQVWPDHGVPADPGCVLNFLQDVNTRQSHlaqageKPGPICVHCSAGIGRTGTFIVIDMILDQI 703
Cdd:cd14601  97 LTNLEKNESRPLTQIQYIAWPDHGVPDDSSDFLDFVCLVRNKRAG------KDEPVVVHCSAGIGRTGVLITMETAMCLI 170

                       170       180       190
                ....*....|....*....|....*....|....*....
gi 23344946 704 VRNGLDTEIDIQRTIqmvRSQRSGLVQTEAQYKFVYYAV 742
Cdd:cd14601 171 ECNQPVYPLDIVRTM---RDQRAMMIQTPSQYRFVCEAI 206
PTPc_plant_PTP1 cd17658
protein tyrosine phosphatase 1 from Arabidopsis thaliana and similar plant PTPs; Arabidopsis ...
 545-739 7.70e-44

protein tyrosine phosphatase 1 from Arabidopsis thaliana and similar plant PTPs; Arabidopsis thaliana protein tyrosine phosphatase 1 (AtPTP1) belongs to the family of classical tyrosine-specific protein tyrosine phosphatases (PTPs). PTPs (EC 3.1.3.48) catalyze the dephosphorylation of phosphotyrosine peptides. AtPTP1 dephosphorylates and inhibits MAP kinase 6 (MPK6) in non-oxidative stress conditions. Together with MAP kinase phosphatase 1 (MKP1) it expresses salicylic acid (SA) and camalexin biosynthesis, and therefore, modulating defense response.


Pssm-ID: 350496 [Multi-domain]  Cd Length: 206  Bit Score: 158.01  E-value: 7.70e-44
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 545 YIATQGCLltqqVNTVTDFWNMVWQENTRVIVMTTKEYERGK-EKCARYWPD-EGRSEQFGHARIQCVSENSTSD-YTLR 621
Cdd:cd17658  18 FIATQGPL----PHTFEDFWEMVIQQRCPVIIMLTRLVDNYStAKCADYFPAeENESREFGRISVTNKKLKHSQHsITLR 93

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 622 EFLVSWRD--QPARRIFHYHFQVWPDHGVPADPGCVLNFLQdvntRQSHLAQAGekpGPICVHCSAGIGRTGTFIVIDMI 699
Cdd:cd17658  94 VLEVQYIEseEPPLSVLHIQYPEWPDHGVPKDTRSVRELLK----RLYGIPPSA---GPIVVHCSAGIGRTGAYCTIHNT 166

                       170       180       190       200
                ....*....|....*....|....*....|....*....|
gi 23344946 700 LDQIVRNGLdTEIDIQRTIQMVRSQRSGLVQTEAQYKFVY 739
Cdd:cd17658 167 IRRILEGDM-SAVDLSKTVRKFRSQRIGMVQTQDQYIFCY 205
R-PTP-F-2 cd14629
PTP-like domain of receptor-type tyrosine-protein phosphatase F, repeat 2; Receptor-type ...
 543-746 1.53e-43

PTP-like domain of receptor-type tyrosine-protein phosphatase F, repeat 2; Receptor-type tyrosine-protein phosphatase F (PTPRF), also known as leukocyte common antigen related (LAR), is the prototypical member of the LAR family of receptor-type tyrosine-protein phosphatases (RPTPs), which belong to the larger family of classical tyrosine-specific protein tyrosine phosphatases (PTPs). PTPs (EC 3.1.3.48) catalyze the dephosphorylation of phosphotyrosine peptides. PTPRF/LAR plays a role for LAR in cadherin complexes where it associates with and dephosphorylates beta-catenin, a pathway which may be critical for cadherin complex stability and cell-cell association. It also regulates focal adhesions through cyclin-dependent kinase-1 and is involved in axon guidance in the developing nervous system. It also functions in regulating insulin signaling. PTPRF contains an extracellular region with three immunoglobulin-like (Ig) domains and four to eight fibronectin type III (FN3) repeats (determined by alternative splicing), a single transmembrane domain, followed by an intracellular region with a membrane-proximal catalytic PTP domain (repeat 1, also called D1) and a membrane-distal non-catalytic PTP-like domain (repeat 2, also called D2). This model represents the non-catalytic PTP-like domain (repeat 2). Although described as non-catalytic, this domain contains the catalytic cysteine and the active site signature motif, HCSAGxGRxG.


Pssm-ID: 350477 [Multi-domain]  Cd Length: 291  Bit Score: 159.89  E-value: 1.53e-43
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 543 KTYIATQGCLltqqVNTVTDFWNMVWQENTRVIVMTTKEYERGKEKCARYWPDEgRSEQFGHARIQCVSENSTSDYTLRE 622
Cdd:cd14629  96 KAYIATQGPL----AETTEDFWRMLWEHNSTIVVMLTKLREMGREKCHQYWPAE-RSARYQYFVVDPMAEYNMPQYILRE 170

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 623 FLVS-WRDQPARRIFHYHFQVWPDHGVPADPGCVLNFLQDVNTRQSHLAQagekPGPICVHCSAGIGRTGTFIVIDMILD 701
Cdd:cd14629 171 FKVTdARDGQSRTIRQFQFTDWPEQGVPKTGEGFIDFIGQVHKTKEQFGQ----DGPITVHCSAGVGRTGVFITLSIVLE 246

                       170       180       190       200
                ....*....|....*....|....*....|....*....|....*
gi 23344946 702 QIVRNGLdteIDIQRTIQMVRSQRSGLVQTEAQYKFVYYAVQHYI 746
Cdd:cd14629 247 RMRYEGV---VDMFQTVKTLRTQRPAMVQTEDQYQLCYRAALEYL 288
R-PTPc-A-2 cd14623
catalytic domain of receptor-type tyrosine-protein phosphatase A, repeat 2; Receptor-type ...
 543-743 1.98e-43

catalytic domain of receptor-type tyrosine-protein phosphatase A, repeat 2; Receptor-type tyrosine-protein phosphatase A (PTPRA), also known as receptor-type tyrosine-protein phosphatase alpha (R-PTP-alpha), belongs to the family of classical tyrosine-specific protein tyrosine phosphatases (PTPs). PTPs (EC 3.1.3.48) catalyze the dephosphorylation of phosphotyrosine peptides. PTPRA is a positive regulator of Src and Src family kinases via dephosphorylation of the Src-inhibitory tyrosine 527. Thus, it affects transformation and tumorigenesis, inhibition of proliferation, cell cycle arrest, integrin signaling, neuronal differentiation and outgrowth, and ion channel activity. It is also involved in interleukin-1 signaling in fibroblasts through its interaction with the focal adhesion targeting domain of focal adhesion kinase. PTPRA comprises a small extracellular domain, a transmembrane segment, and an intracellular region containing two tandem catalytic PTP domains. This model represents the second PTP domain (repeat 2).


Pssm-ID: 350471 [Multi-domain]  Cd Length: 228  Bit Score: 157.51  E-value: 1.98e-43
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 543 KTYIATQGCLLtqqvNTVTDFWNMVWQENTRVIVMTTKEYERGKEKCARYWPDEGrSEQFGHARIQCVSENSTSDYTLRE 622
Cdd:cd14623  39 DSYIASQGPLQ----HTIEDFWRMIWEWKSCSIVMLTELEERGQEKCAQYWPSDG-SVSYGDITIELKKEEECESYTVRD 113

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 623 FLVS-WRDQPARRIFHYHFQVWPDHGVPADPGCVLNFLQDVNTRQShlaQAGEKpgPICVHCSAGIGRTGTFIVIDMILD 701
Cdd:cd14623 114 LLVTnTRENKSRQIRQFHFHGWPEVGIPSDGKGMINIIAAVQKQQQ---QSGNH--PITVHCSAGAGRTGTFCALSTVLE 188

                       170       180       190       200
                ....*....|....*....|....*....|....*....|..
gi 23344946 702 QIVRNGLdteIDIQRTIQMVRSQRSGLVQTEAQYKFVYYAVQ 743
Cdd:cd14623 189 RVKAEGI---LDVFQTVKSLRLQRPHMVQTLEQYEFCYKVVQ 227
R-PTPc-V cd14618
catalytic domain of receptor-type tyrosine-protein phosphatase V; Receptor-type ...
 545-739 2.46e-43

catalytic domain of receptor-type tyrosine-protein phosphatase V; Receptor-type tyrosine-protein phosphatase V (PTPRV or R-PTP-V), also known as embryonic stem cell protein-tyrosine phosphatase (ES cell phosphatase) or osteotesticular protein-tyrosine phosphatase (OST-PTP), belongs to the family of classical tyrosine-specific protein tyrosine phosphatases (PTPs). PTPs (EC 3.1.3.48) catalyze the dephosphorylation of phosphotyrosine peptides. PTPRV is a member of the R3 subfamily of receptor-type phosphotyrosine phosphatases (RPTP), characterized by a unique modular composition consisting of multiple extracellular fibronectin type III (FN3) repeats and a single (most RPTP subtypes have two) cytoplasmic catalytic PTP domain. In rodents, it may play a role in the maintenance of pluripotency and may function in signaling pathways during bone remodeling. It is the only PTP whose function has been lost between rodent and human. The human OST-PTP gene is a pseudogene.


Pssm-ID: 350466 [Multi-domain]  Cd Length: 230  Bit Score: 157.41  E-value: 2.46e-43
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 545 YIATQGCLltqqVNTVTDFWNMVWQENTRVIVMTTKEYERGKEKCARYWPDEGRSEQFGHARIQCVSENSTSDYTLREFL 624
Cdd:cd14618  42 FIATQGPL----KKTIEDFWRLVWEQQVCNIIMLTVGMENGRVLCDHYWPSESTPVSYGHITVHLLAQSSEDEWTRREFK 117

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 625 VSWRD-QPARRIFHYHFQVWPDHGVPADPGCVLNFLQDVntrQSHLaQAGEKPGPICVHCSAGIGRTGTFIVIDMILDQI 703
Cdd:cd14618 118 LWHEDlRKERRVKHLHYTAWPDHGIPESTSSLMAFRELV---REHV-QATKGKGPTLVHCSAGVGRSGTFIALDRLLRQL 193

                       170       180       190
                ....*....|....*....|....*....|....*.
gi 23344946 704 VRnglDTEIDIQRTIQMVRSQRSGLVQTEAQYKFVY 739
Cdd:cd14618 194 KE---EKVVDVFNTVYILRMHRYLMIQTLSQYIFLH 226
PTPc-N20 cd14596
catalytic domain of tyrosine-protein phosphatase non-receptor type 20; Tyrosine-protein ...
 545-747 4.44e-43

catalytic domain of tyrosine-protein phosphatase non-receptor type 20; Tyrosine-protein phosphatase non-receptor type 20 (PTPN20) belongs to the family of classical tyrosine-specific protein tyrosine phosphatases (PTPs). PTPs (EC 3.1.3.48) catalyze the dephosphorylation of phosphotyrosine peptides. Human PTPN20 is a widely expressed phosphatase with a dynamic subcellular distribution that is targeted to sites of actin polymerization.


Pssm-ID: 350444 [Multi-domain]  Cd Length: 207  Bit Score: 155.68  E-value: 4.44e-43
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 545 YIATQGCLLtqqvNTVTDFWNMVWQENTRVIVMTTKEYERGKEKCARYWPDE-GRSEQFGHARIQCVSENSTSDYTLREF 623
Cdd:cd14596  18 YIATQGPLP----STIDDFWQMVWENRSDVIAMMTREVERGKVKCHRYWPETlQEPMELENYQLRLENYQALQYFIIRII 93

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 624 -LVSWRDQPARRIFHYHFQVWPDHGVPADPGCVLNFLQDVntRQSHLAqagekpGPICVHCSAGIGRTGTFIVIDMILDQ 702
Cdd:cd14596  94 kLVEKETGENRLIKHLQFTTWPDHGTPQSSDQLVKFICYM--RKVHNT------GPIVVHCSAGIGRAGVLICVDVLLSL 165

                       170       180       190       200
                ....*....|....*....|....*....|....*....|....*
gi 23344946 703 IVRnglDTEIDIQRTIQMVRSQRSGLVQTEAQYKFVYYAVQHYIQ 747
Cdd:cd14596 166 IEK---DLSFNIKDIVREMRQQRYGMIQTKDQYLFCYKVVLEVLQ 207
R-PTP-N cd14609
PTP-like domain of receptor-type tyrosine-protein phosphatase N; Receptor-type ...
 545-742 8.46e-43

PTP-like domain of receptor-type tyrosine-protein phosphatase N; Receptor-type tyrosine-protein phosphatase-like N (PTPRN or R-PTP-N), also called islet cell antigen 512 (ICA512) or PTP IA-2, belongs to the family of classical tyrosine-specific protein tyrosine phosphatases (PTPs). It consists of a large ectodomain that contains a RESP18HD (regulated endocrine-specific protein 18 homology domain), followed by a transmembrane segment, and a single, catalytically-impaired, PTP domain. PTPRN is located in secretory granules of neuroendocrine cells and is involved in the generation, cargo storage, traffic, exocytosis and recycling of insulin secretory granules, as well as in beta-cell proliferation. It is a major autoantigen in type 1 diabetes and is involved in the regulation of insulin secretion.


Pssm-ID: 350457 [Multi-domain]  Cd Length: 281  Bit Score: 157.51  E-value: 8.46e-43
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 545 YIATQGCLltqqVNTVTDFWNMVWQENTRVIVMTTKEYERGKEKCARYWPDEGrSEQFGHARIQCVSENS-TSDYTLREF 623
Cdd:cd14609  88 YIATQGPL----SHTIADFWQMVWENGCTVIVMLTPLVEDGVKQCDRYWPDEG-SSLYHIYEVNLVSEHIwCEDFLVRSF 162

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 624 -LVSWRDQPARRIFHYHFQVWPDHGVPADPGCVLNFLQDVNtrQSHLAQAgekpGPICVHCSAGIGRTGTFIVIDMILDQ 702
Cdd:cd14609 163 yLKNVQTQETRTLTQFHFLSWPAEGIPSSTRPLLDFRRKVN--KCYRGRS----CPIIVHCSDGAGRTGTYILIDMVLNR 236

                       170       180       190       200
                ....*....|....*....|....*....|....*....|
gi 23344946 703 IVRnGLdTEIDIQRTIQMVRSQRSGLVQTEAQYKFVYYAV 742
Cdd:cd14609 237 MAK-GV-KEIDIAATLEHVRDQRPGMVRTKDQFEFALTAV 274
R-PTPc-C-1 cd14557
catalytic domain of receptor-type tyrosine-protein phosphatase C, repeat 1; Receptor-type ...
 543-739 1.74e-42

catalytic domain of receptor-type tyrosine-protein phosphatase C, repeat 1; Receptor-type tyrosine-protein phosphatase C (PTPRC), also known as CD45, leukocyte common antigen (LCA) or GP180, belongs to the family of classical tyrosine-specific protein tyrosine phosphatases (PTPs). PTPs (EC 3.1.3.48) catalyze the dephosphorylation of phosphotyrosine peptides. PTPRC/CD45 is found in all nucleated hematopoietic cells and is an essential regulator of T- and B-cell antigen receptor signaling. It controls immune response, both positively and negatively, by dephosphorylating a number of signaling molecules such as the Src family kinases, the CD3zeta chain of TCY, and ZAP-70 kinase. Mutations in the human PTPRC/CD45 gene are associated with severe combined immunodeficiency (SCID) and multiple sclerosis. PTPRC/CD45 contains an extracellular receptor-like region with fibronectin type III (FN3) repeats, a short transmembrane segment, and a cytoplasmic region comprising of a membrane proximal catalytically active PTP domain (repeat 1 or D1) and a membrane distal catalytically impaired PTP-like domain (repeat 2, or D2). This model represents repeat 1.


Pssm-ID: 350405 [Multi-domain]  Cd Length: 201  Bit Score: 153.83  E-value: 1.74e-42
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 543 KTYIATQGclltQQVNTVTDFWNMVWQENTRVIVMTTKEYERGKEKCARYWPD-EGRSEQFGHARIQCVSENSTSDYTLR 621
Cdd:cd14557  14 RKYIAAQG----PKDETVDDFWRMIWEQKSTVIVMVTRCEEGNRNKCAQYWPSmEEGSRAFGDVVVKINEEKICPDYIIR 89

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 622 EFLVSWRDQP--ARRIFHYHFQVWPDHGVPADPGCVLNFLQDVNTRQSHLAqagekpGPICVHCSAGIGRTGTFIVIDMI 699
Cdd:cd14557  90 KLNINNKKEKgsGREVTHIQFTSWPDHGVPEDPHLLLKLRRRVNAFNNFFS------GPIVVHCSAGVGRTGTYIGIDAM 163

                       170       180       190       200
                ....*....|....*....|....*....|....*....|..
gi 23344946 700 LDqivrnGLDTE--IDIQRTIQMVRSQRSGLVQTEAQYKFVY 739
Cdd:cd14557 164 LE-----GLEAEgrVDVYGYVVKLRRQRCLMVQVEAQYILIH 200
R-PTPc-M-1 cd14633
catalytic domain of receptor-type tyrosine-protein phosphatase M, repeat 1; Receptor-type ...
 545-742 2.45e-42

catalytic domain of receptor-type tyrosine-protein phosphatase M, repeat 1; Receptor-type tyrosine-protein phosphatase M (PTPRM), also known as protein-tyrosine phosphatase mu (R-PTP-mu or PTPmu), belongs to the type IIb subfamily of receptor protein tyrosine phosphatases (RPTPs), which belong to the larger family of classical tyrosine-specific protein tyrosine phosphatases (PTPs). PTPs (EC 3.1.3.48) catalyze the dephosphorylation of phosphotyrosine peptides. PTPRM/PTPmu is a homophilic cell adhesion molecule expressed in CNS neurons and glia. It is required for E-, N-, and R-cadherin-dependent neurite outgrowth. Loss of PTPmu contributes to tumor cell migration and dispersal of human glioblastomas. PTPRM contains an extracellular region with an Meprin-A5 (neuropilin)-mu (MAM) domain, an immunoglobulin (Ig) domain, and four fibronectin type III (FN3) repeats, a transmembrane domain, and an intracellular segment with a juxtamembrane domain similar to the cytoplasmic domain of classical cadherins and two tandem PTP domains. This model represents the first (repeat 1) PTP domain.


Pssm-ID: 350481 [Multi-domain]  Cd Length: 273  Bit Score: 155.97  E-value: 2.45e-42
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 545 YIATQGCLLtqqvNTVTDFWNMVWQENTRVIVMTTKEYERGKEKCARYWPDEgrSEQFGHARIQCVSENSTSDYTLREFL 624
Cdd:cd14633  85 YIATQGPMQ----ETIYDFWRMVWHENTASIIMVTNLVEVGRVKCCKYWPDD--TEIYKDIKVTLIETELLAEYVIRTFA 158

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 625 VSWRD-QPARRIFHYHFQVWPDHGVPADPGCVLNFLQDVNTRQSHLAqagekpGPICVHCSAGIGRTGTFIVIDMILDQI 703
Cdd:cd14633 159 VEKRGvHEIREIRQFHFTGWPDHGVPYHATGLLGFVRQVKSKSPPNA------GPLVVHCSAGAGRTGCFIVIDIMLDMA 232

                       170       180       190
                ....*....|....*....|....*....|....*....
gi 23344946 704 VRNGLdteIDIQRTIQMVRSQRSGLVQTEAQYKFVYYAV 742
Cdd:cd14633 233 EREGV---VDIYNCVRELRSRRVNMVQTEEQYVFIHDAI 268
R-PTPc-F-1 cd14626
catalytic domain of receptor-type tyrosine-protein phosphatase F, repeat 1; Receptor-type ...
 545-742 3.46e-42

catalytic domain of receptor-type tyrosine-protein phosphatase F, repeat 1; Receptor-type tyrosine-protein phosphatase F (PTPRF), also known as leukocyte common antigen related (LAR), is the prototypical member of the LAR family of receptor-type tyrosine-protein phosphatases (RPTPs), which belong to the larger family of classical tyrosine-specific protein tyrosine phosphatases (PTPs). PTPs (EC 3.1.3.48) catalyze the dephosphorylation of phosphotyrosine peptides. PTPRF/LAR plays a role for LAR in cadherin complexes where it associates with and dephosphorylates beta-catenin, a pathway which may be critical for cadherin complex stability and cell-cell association. It also regulates focal adhesions through cyclin-dependent kinase-1 and is involved in axon guidance in the developing nervous system. It also functions in regulating insulin signaling. PTPRF contains an extracellular region with three immunoglobulin-like (Ig) domains and four to eight fibronectin type III (FN3) repeats (determined by alternative splicing), a single transmembrane domain, followed by an intracellular region with a membrane-proximal catalytic PTP domain (repeat 1, also called D1) and a membrane-distal non-catalytic PTP-like domain (repeat 2, also called D2). This model represents the catalytic PTP domain (repeat 1).


Pssm-ID: 350474 [Multi-domain]  Cd Length: 276  Bit Score: 155.58  E-value: 3.46e-42
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 545 YIATQGCLltqqVNTVTDFWNMVWQENTRVIVMTTKEYERGKEKCARYWPDEGrSEQFGHARIQCVSENSTSDYTLREFL 624
Cdd:cd14626  86 YIATQGPL----PETLSDFWRMVWEQRTATIVMMTRLEEKSRVKCDQYWPIRG-TETYGMIQVTLLDTVELATYSVRTFA 160

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 625 VSWRDQPARR-IFHYHFQVWPDHGVPADPGCVLNFLQDVNtrqshlAQAGEKPGPICVHCSAGIGRTGTFIVIDMILDqi 703
Cdd:cd14626 161 LYKNGSSEKReVRQFQFMAWPDHGVPEYPTPILAFLRRVK------ACNPPDAGPMVVHCSAGVGRTGCFIVIDAMLE-- 232

                       170       180       190
                ....*....|....*....|....*....|....*....
gi 23344946 704 vRNGLDTEIDIQRTIQMVRSQRSGLVQTEAQYKFVYYAV 742
Cdd:cd14626 233 -RMKHEKTVDIYGHVTCMRSQRNYMVQTEDQYIFIHEAL 270
PTPc-N3 cd14600
catalytic domain of tyrosine-protein phosphatase non-receptor type 3; Tyrosine-protein ...
 545-742 3.65e-42

catalytic domain of tyrosine-protein phosphatase non-receptor type 3; Tyrosine-protein phosphatase non-receptor type 3 (PTPN3), also called protein-tyrosine phosphatase H1 (PTP-H1), belongs to the family of classical tyrosine-specific protein tyrosine phosphatases (PTPs). PTPs (EC 3.1.3.48) catalyze the dephosphorylation of phosphotyrosine peptides. PTPN3 interacts with mitogen-activated protein kinase p38gamma and serves as its specific phosphatase. PTPN3 and p38gamma cooperate to promote Ras-induced oncogenesis. PTPN3 is a large modular protein containing an N-terminal FERM domain, a PDZ domain and a C-terminal catalytic PTP domain. Its PDZ domain binds with the PDZ-binding motif of p38gamma and enables efficient tyrosine dephosphorylation.


Pssm-ID: 350448 [Multi-domain]  Cd Length: 274  Bit Score: 155.39  E-value: 3.65e-42
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 545 YIATQGCLltqqVNTVTDFWNMVWQENTRVIVMTTKEYERGKEKCARYWPDEGRSEQFGHARIQCVSENSTSDYTLREFL 624
Cdd:cd14600  84 YIATQGPL----PHTCAQFWQVVWEQKLSLIVMLTTLTERGRTKCHQYWPDPPDVMEYGGFRVQCHSEDCTIAYVFREML 159

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 625 VS-WRDQPARRIFHYHFQVWPDHGVPADPGCVLNFLQDVNTRQshlaQAGEkpgPICVHCSAGIGRTGTFIVIDMILDQI 703
Cdd:cd14600 160 LTnTQTGEERTVTHLQYVAWPDHGVPDDSSDFLEFVNYVRSKR----VENE---PVLVHCSAGIGRTGVLVTMETAMCLT 232

                       170       180       190
                ....*....|....*....|....*....|....*....
gi 23344946 704 VRNGLDTEIDIQRTIqmvRSQRSGLVQTEAQYKFVYYAV 742
Cdd:cd14600 233 ERNQPVYPLDIVRKM---RDQRAMMVQTSSQYKFVCEAI 268
R-PTP-N2 cd14610
PTP-like domain of receptor-type tyrosine-protein phosphatase N2; Receptor-type ...
 545-749 7.25e-42

PTP-like domain of receptor-type tyrosine-protein phosphatase N2; Receptor-type tyrosine-protein phosphatase N2 (PTPRN2 or R-PTP-N2), also called islet cell autoantigen-related protein (IAR), ICAAR, phogrin, or IA-2beta, belongs to the family of classical tyrosine-specific protein tyrosine phosphatases (PTPs). It consists of a large ectodomain that contains a RESP18HD (regulated endocrine-specific protein 18 homology domain), followed by a transmembrane segment, and a single, catalytically-impaired, PTP domain. It is mainly expressed in neuropeptidergic neurons and peptide-secreting endocrine cells, including insulin-producing pancreatic beta-cells. It may function as a phosphatidylinositol phosphatase to regulate insulin secretion. It is also required for normal accumulation of the neurotransmitters norepinephrine, dopamine and serotonin in the brain.


Pssm-ID: 350458 [Multi-domain]  Cd Length: 283  Bit Score: 154.83  E-value: 7.25e-42
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 545 YIATQGCLLTqqvnTVTDFWNMVWQENTRVIVMTTKEYERGKEKCARYWPDEGrSEQFGHARIQCVSENS-TSDYTLREF 623
Cdd:cd14610  90 YIATQGPLPA----TVADFWQMVWESGCVVIVMLTPLAENGVKQCYHYWPDEG-SNLYHIYEVNLVSEHIwCEDFLVRSF 164

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 624 -LVSWRDQPARRIFHYHFQVWPDHGVPADPGCVLNFLQDVNTrqshlAQAGeKPGPICVHCSAGIGRTGTFIVIDMILDQ 702
Cdd:cd14610 165 yLKNLQTNETRTVTQFHFLSWNDQGVPASTRSLLDFRRKVNK-----CYRG-RSCPIIVHCSDGAGRSGTYILIDMVLNK 238

                       170       180       190       200
                ....*....|....*....|....*....|....*....|....*..
gi 23344946 703 IVRNGldTEIDIQRTIQMVRSQRSGLVQTEAQYKFVYYAVQHYIQTL 749
Cdd:cd14610 239 MAKGA--KEIDIAATLEHLRDQRPGMVQTKEQFEFALTAVAEEVNAI 283
PTPc-N2 cd14607
catalytic domain of tyrosine-protein phosphatase non-receptor type 2; Tyrosine-protein ...
 543-742 1.78e-41

catalytic domain of tyrosine-protein phosphatase non-receptor type 2; Tyrosine-protein phosphatase non-receptor type 2 (PTPN2), also called T-cell protein-tyrosine phosphatase (TCPTP), belongs to the family of classical tyrosine-specific protein tyrosine phosphatases (PTPs). PTPs (EC 3.1.3.48) catalyze the dephosphorylation of phosphotyrosine peptides. PTPN2, a tumor suppressor, dephosphorylates and inactivates EGFRs, Src family kinases, Janus-activated kinases (JAKs)-1 and -3, and signal transducer and activators of transcription (STATs)-1, -3 and -5, in a cell type and context-dependent manner. It is deleted in 6% of all T-cell acute lymphoblastic leukemias and is associated with constitutive JAK1/STAT5 signaling and tumorigenesis.


Pssm-ID: 350455 [Multi-domain]  Cd Length: 257  Bit Score: 152.81  E-value: 1.78e-41
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 543 KTYIATQGCLltqqVNTVTDFWNMVWQENTRVIVMTTKEYERGKEKCARYWPDEGRSEQFGHA---RIQCVSENSTSDYT 619
Cdd:cd14607  63 RSYILTQGPL----PNTCCHFWLMVWQQKTKAVVMLNRIVEKDSVKCAQYWPTDEEEVLSFKEtgfSVKLLSEDVKSYYT 138

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 620 LREF-LVSWRDQPARRIFHYHFQVWPDHGVPADPGCVLNFLQDVntRQShlAQAGEKPGPICVHCSAGIGRTGTFIVIDM 698
Cdd:cd14607 139 VHLLqLENINSGETRTISHFHYTTWPDFGVPESPASFLNFLFKV--RES--GSLSPEHGPAVVHCSAGIGRSGTFSLVDT 214

                       170       180       190       200
                ....*....|....*....|....*....|....*....|....
gi 23344946 699 ILDQIVRNGLDTeIDIQRTIQMVRSQRSGLVQTEAQYKFVYYAV 742
Cdd:cd14607 215 CLVLMEKKDPDS-VDIKQVLLDMRKYRMGLIQTPDQLRFSYMAV 257
PTPc-N5 cd14613
catalytic domain of tyrosine-protein phosphatase non-receptor type 5; Tyrosine-protein ...
 543-745 2.84e-41

catalytic domain of tyrosine-protein phosphatase non-receptor type 5; Tyrosine-protein phosphatase non-receptor type 5 (PTPN5), also called striatum-enriched protein-tyrosine phosphatase (STEP) or neural-specific PTP, belongs to the family of classical tyrosine-specific protein tyrosine phosphatases (PTPs). PTPs (EC 3.1.3.48) catalyze the dephosphorylation of phosphotyrosine peptides. PTPN5/STEP is a kinase interaction motif (KIM)-PTP, characterized by the presence of a 16-amino-acid KIM that binds specifically to members of the MAPK (mitogen-activated protein kinase) family. It is a CNS-enriched protein that regulates key signaling proteins required for synaptic strengthening, as well as NMDA and AMPA receptor trafficking. PTPN5 is implicated in multiple neurologic and neuropsychiatric disorders, such as Alzheimer's disease, Parkinson's disease, schizophrenia, and fragile X syndrome.


Pssm-ID: 350461 [Multi-domain]  Cd Length: 258  Bit Score: 152.32  E-value: 2.84e-41
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 543 KTYIATQGclltQQVNTVTDFWNMVWQENTRVIVMTTKeYERGKEKCARYWPDEgrSEQFGHARIQCVSENSTSDYTLRE 622
Cdd:cd14613  70 KVYIATQG----PTVNTVGDFWRMVWQERSPIIVMITN-IEEMNEKCTEYWPEE--QVTYEGIEITVKQVIHADDYRLRL 142

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 623 FLVSwRDQPARRIFHYHFQVWPDHGVPADPGCVLNFLQDVN-TRQshlaQAGEKPGPICVHCSAGIGRTGTFIVIDMILD 701
Cdd:cd14613 143 ITLK-SGGEERGLKHYWYTSWPDQKTPDNAPPLLQLVQEVEeARQ----QAEPNCGPVIVHCSAGIGRTGCFIATSICCK 217

                       170       180       190       200
                ....*....|....*....|....*....|....*....|....
gi 23344946 702 QIVRNGLdteIDIQRTIQMVRSQRSGLVQTEAQYKFVYYAVQHY 745
Cdd:cd14613 218 QLRNEGV---VDILRTTCQLRLDRGGMIQTCEQYQFVHHVLSLY 258
PTP-N23 cd14539
PTP-like domain of tyrosine-protein phosphatase non-receptor type 23; Tyrosine-protein ...
 544-739 4.27e-40

PTP-like domain of tyrosine-protein phosphatase non-receptor type 23; Tyrosine-protein phosphatase non-receptor type 23 (PTPN23), also called His domain-containing protein tyrosine phosphatase (HD-PTP) or protein tyrosine phosphatase TD14 (PTP-TD14), is a catalytically inactive member of the tyrosine-specific protein tyrosine phosphatase (PTP) family. Human PTPN23 may be involved in the regulation of small nuclear ribonucleoprotein assembly and pre-mRNA splicing by modifying the survival motor neuron (SMN) complex. It plays a role in ciliogenesis and is part of endosomal sorting complex required for transport (ESCRT) pathways. PTPN23 contains five domains: a BRO1-like domain that plays a role in endosomal sorting; a V-domain that interacts with Lys63-linked polyubiquitinated substrates; a central proline-rich region that might recruit SH3-containing proteins; a PTP-like domain; and a proteolytic degradation-targeting motif, also known as a PEST sequence.


Pssm-ID: 350387 [Multi-domain]  Cd Length: 205  Bit Score: 147.15  E-value: 4.27e-40
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 544 TYIATQGCLltqqVNTVTDFWNMVWQENTRVIVMTTKEYERGKEKCARYWPDE-GRSEQFGHARIQCVSENSTSDYTLRE 622
Cdd:cd14539  16 RFIATQAPL----PGTAADFWLMVYEQQVSVIVMLVSEQENEKQKVHRYWPTErGQALVYGAITVSLQSVRTTPTHVERI 91

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 623 FLVSWRDQPARR-IFHYHFQVWPDHGVPADPGCVLNFLQDVntrQSHLAQAGEKPGPICVHCSAGIGRTGTF-IVIDMIL 700
Cdd:cd14539  92 ISIQHKDTRLSRsVVHLQFTTWPELGLPDSPNPLLRFIEEV---HSHYLQQRSLQTPIVVHCSSGVGRTGAFcLLYAAVQ 168

                       170       180       190
                ....*....|....*....|....*....|....*....
gi 23344946 701 DQIVRNGLdteIDIQRTIQMVRSQRSGLVQTEAQYKFVY 739
Cdd:cd14539 169 EIEAGNGI---PDLPQLVRKMRQQRKYMLQEKEHLKFCY 204
R-PTP-C-2 cd14558
PTP-like domain of receptor-type tyrosine-protein phosphatase C, repeat 2; Receptor-type ...
 543-739 2.71e-39

PTP-like domain of receptor-type tyrosine-protein phosphatase C, repeat 2; Receptor-type tyrosine-protein phosphatase C (PTPRC), also known as CD45, leukocyte common antigen (LCA) or GP180, belongs to the family of classical tyrosine-specific protein tyrosine phosphatases (PTPs). PTPs (EC 3.1.3.48) catalyze the dephosphorylation of phosphotyrosine peptides. PTPRC/CD45 is found in all nucleated hematopoietic cells and is an essential regulator of T- and B-cell antigen receptor signaling. It controls immune response, both positively and negatively, by dephosphorylating a number of signaling molecules such as the Src family kinases, the CD3zeta chain of TCY, and ZAP-70 kinase. Mutations in the human PTPRC/CD45 gene are associated with severe combined immunodeficiency (SCID) and multiple sclerosis. PTPRC/CD45 contains an extracellular receptor-like region with fibronectin type III (FN3) repeats, a short transmembrane segment, and a cytoplasmic region comprising of a membrane proximal catalytically active PTP domain (repeat 1 or D1) and a membrane distal catalytically impaired PTP-like domain (repeat 2, or D2). This model represents repeat 2.


Pssm-ID: 350406 [Multi-domain]  Cd Length: 203  Bit Score: 144.84  E-value: 2.71e-39
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 543 KTYIATQGCLltqqVNTVTDFWNMVWQENTRVIVMTTKEYERGKEKCARYWPDEGRSeqFGHARIQCVSENSTSDYTLRE 622
Cdd:cd14558  14 KSLIATQGPL----PDTIADFWQMIFQKKVKVIVMLTELKEGDQEQCAQYWGDEKKT--YGDIEVELKDTEKSPTYTVRV 87

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 623 FLVSWRDQPA-RRIFHYHFQVWPDHGVPADPGCVLNFLQDVNTRQSHLAQAGEKPGPICVHCSAGIGRTGTFIVIDMILD 701
Cdd:cd14558  88 FEITHLKRKDsRTVYQYQYHKWKGEELPEKPKDLVDMIKSIKQKLPYKNSKHGRSVPIVVHCSDGSSRTGIFCALWNLLE 167

                       170       180       190       200
                ....*....|....*....|....*....|....*....|
gi 23344946 702 QIvrnglDTE--IDIQRTIQMVRSQRSGLVQTEAQYKFVY 739
Cdd:cd14558 168 SA-----ETEkvVDVFQVVKALRKQRPGMVSTLEQYQFLY 202
R-PTPc-R cd14611
catalytic domain of receptor-type tyrosine-protein phosphatase R; Receptor-type ...
 543-740 4.19e-39

catalytic domain of receptor-type tyrosine-protein phosphatase R; Receptor-type tyrosine-protein phosphatase-like R (PTPRR or R-PTP-R), also called protein-tyrosine phosphatase PCPTP1, belongs to the family of classical tyrosine-specific protein tyrosine phosphatases (PTPs). PTPs (EC 3.1.3.48) catalyze the dephosphorylation of phosphotyrosine peptides. PTPRR is a kinase interaction motif (KIM)-PTP, characterized by the presence of a 16-amino-acid KIM that binds specifically to members of the MAPK (mitogen-activated protein kinase) family. The human and mouse PTPRR gene produces multiple neuronal protein isoforms of varying sizes (in human, PTPPBS-alpha, beta, gamma and delta). All isoforms contain the KIM motif and the catalytic PTP domain. PTPRR-deficient mice show significant defects in fine motor coordination and balance skills that are reminiscent of a mild ataxia.


Pssm-ID: 350459 [Multi-domain]  Cd Length: 226  Bit Score: 145.06  E-value: 4.19e-39
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 543 KTYIATQGCLltqqVNTVTDFWNMVWQENTRVIVMTTKEYERgKEKCARYWPDegRSEQFGHARIQCVSENSTSDYTLRE 622
Cdd:cd14611  44 KAFIATQGPM----INTVNDFWQMVWQEDSPVIVMITKLKEK-NEKCVLYWPE--KRGIYGKVEVLVNSVKECDNYTIRN 116

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 623 FLVSWRDQpARRIFHYHFQVWPDHGVPADPGCVLNFLQDVntRQSHLAQAGEkpGPICVHCSAGIGRTGTFIVIDMILDQ 702
Cdd:cd14611 117 LTLKQGSQ-SRSVKHYWYTSWPDHKTPDSAQPLLQLMLDV--EEDRLASPGR--GPVVVHCSAGIGRTGCFIATTIGCQQ 191

                       170       180       190
                ....*....|....*....|....*....|....*...
gi 23344946 703 IVRNGLdteIDIQRTIQMVRSQRSGLVQTEAQYKFVYY 740
Cdd:cd14611 192 LKEEGV---VDVLSIVCQLRVDRGGMVQTSEQYEFVHH 226
R-PTPc-D-1 cd14624
catalytic domain of receptor-type tyrosine-protein phosphatase D, repeat 1; Receptor-type ...
 545-742 1.97e-38

catalytic domain of receptor-type tyrosine-protein phosphatase D, repeat 1; Receptor-type tyrosine-protein phosphatase D (PTPRD), also known as receptor-type tyrosine-protein phosphatase delta (R-PTP-delta), belongs to the LAR (leukocyte common antigen-related) family of receptor-type tyrosine-protein phosphatases (RPTPs), which belong to the larger family of classical tyrosine-specific protein tyrosine phosphatases (PTPs). PTPs (EC 3.1.3.48) catalyze the dephosphorylation of phosphotyrosine peptides. LAR-RPTPs are synaptic adhesion molecules that play roles in various aspects of neuronal development, including axon guidance, neurite extension, and synapse formation and function. PTPRD is involved in pre-synaptic differentiation through interaction with SLITRK2. It contains an extracellular region with three immunoglobulin-like (Ig) domains and four to eight fibronectin type III (FN3) repeats (determined by alternative splicing), a single transmembrane domain, followed by an intracellular region with a membrane-proximal catalytic PTP domain (repeat 1, also called D1) and a membrane-distal non-catalytic PTP-like domain (repeat 2, also called D2). This model represents the catalytic PTP domain (repeat 1).


Pssm-ID: 350472 [Multi-domain]  Cd Length: 284  Bit Score: 144.87  E-value: 1.97e-38
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 545 YIATQGCLltqqVNTVTDFWNMVWQENTRVIVMTTKEYERGKEKCARYWPDEGrSEQFGHARIQCVSENSTSDYTLREF- 623
Cdd:cd14624  92 YIATQGAL----PETFGDFWRMIWEQRSATVVMMTKLEERSRVKCDQYWPSRG-TETYGLIQVTLLDTVELATYCVRTFa 166

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 624 LVSWRDQPARRIFHYHFQVWPDHGVPADPGCVLNFLQDVNTRQSHLAqagekpGPICVHCSAGIGRTGTFIVIDMILDQI 703
Cdd:cd14624 167 LYKNGSSEKREVRQFQFTAWPDHGVPEHPTPFLAFLRRVKTCNPPDA------GPMVVHCSAGVGRTGCFIVIDAMLERI 240

                       170       180       190
                ....*....|....*....|....*....|....*....
gi 23344946 704 VRnglDTEIDIQRTIQMVRSQRSGLVQTEAQYKFVYYAV 742
Cdd:cd14624 241 KH---EKTVDIYGHVTLMRAQRNYMVQTEDQYIFIHDAL 276
R-PTPc-S-1 cd14625
catalytic domain of receptor-type tyrosine-protein phosphatase S, repeat 1; Receptor-type ...
 545-742 2.66e-38

catalytic domain of receptor-type tyrosine-protein phosphatase S, repeat 1; Receptor-type tyrosine-protein phosphatase S (PTPRS), also known as receptor-type tyrosine-protein phosphatase sigma (R-PTP-sigma), belongs to the LAR (leukocyte common antigen-related) family of receptor-type tyrosine-protein phosphatases (RPTPs), which belong to the larger family of classical tyrosine-specific protein tyrosine phosphatases (PTPs). PTPs (EC 3.1.3.48) catalyze the dephosphorylation of phosphotyrosine peptides. PTPRS is a receptor for glycosaminoglycans, including heparan sulfate proteoglycan and neural chondroitin sulfate proteoglycans (CSPGs), which present a barrier to axon regeneration. It also plays a role in stimulating neurite outgrowth in response to the heparan sulfate proteoglycan GPC2. PTPRS contains an extracellular region with three immunoglobulin-like (Ig) domains and four to eight fibronectin type III (FN3) repeats (determined by alternative splicing), a single transmembrane domain, followed by an intracellular region with a membrane-proximal catalytic PTP domain (repeat 1, also called D1) and a membrane-distal non-catalytic PTP-like domain (repeat 2, also called D2). This model represents the catalytic PTP domain (repeat 1).


Pssm-ID: 350473 [Multi-domain]  Cd Length: 282  Bit Score: 144.47  E-value: 2.66e-38
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 545 YIATQGCLltqqVNTVTDFWNMVWQENTRVIVMTTKEYERGKEKCARYWPDEGrSEQFGHARIQCVSENSTSDYTLREFL 624
Cdd:cd14625  92 YIATQGPL----PETFGDFWRMVWEQRSATVVMMTKLEEKSRIKCDQYWPSRG-TETYGMIQVTLLDTIELATFCVRTFS 166

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 625 VSWRDQPARR-IFHYHFQVWPDHGVPADPGCVLNFLQDVNTRQSHLAqagekpGPICVHCSAGIGRTGTFIVIDMILDQI 703
Cdd:cd14625 167 LHKNGSSEKReVRQFQFTAWPDHGVPEYPTPFLAFLRRVKTCNPPDA------GPIVVHCSAGVGRTGCFIVIDAMLERI 240

                       170       180       190
                ....*....|....*....|....*....|....*....
gi 23344946 704 VRnglDTEIDIQRTIQMVRSQRSGLVQTEAQYKFVYYAV 742
Cdd:cd14625 241 KH---EKTVDIYGHVTLMRSQRNYMVQTEDQYSFIHDAL 276
PTPc-N21 cd14598
catalytic domain of tyrosine-protein phosphatase non-receptor type 21; Tyrosine-protein ...
 545-747 1.26e-37

catalytic domain of tyrosine-protein phosphatase non-receptor type 21; Tyrosine-protein phosphatase non-receptor type 21 (PTPN21), also called protein-tyrosine phosphatase D1, belongs to the family of classical tyrosine-specific protein tyrosine phosphatases (PTPs). PTPs (EC 3.1.3.48) catalyze the dephosphorylation of phosphotyrosine peptides. PTPN21 is a component of a multivalent scaffold complex nucleated by focal adhesion kinase (FAK) at specific intracellular sites. It promotes cytoskeleton events that induce cell adhesion and migration by modulating Src-FAK signaling. It can also selectively associate with and stimulate Tec family kinases and modulate Stat3 activation. Human PTPN21 may also play a pathologic role in gastrointestinal tract tumorigenesis. PTPN21 contains an N-terminal FERM domain and a C-terminal catalytic PTP domain, separated by a long intervening sequence.


Pssm-ID: 350446 [Multi-domain]  Cd Length: 220  Bit Score: 140.50  E-value: 1.26e-37
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 545 YIATQGCLltqqVNTVTDFWNMVWQENTRVIVMTTKEYERGKEKCARYWPDEG-RSEQFGHARIQCVSE-------NSTS 616
Cdd:cd14598  18 YIATQGPL----QNTCQDFWQMVWEQGVAIIAMVTAEEEGGREKSFRYWPRLGsRHNTVTYGRFKITTRfrtdsgcYATT 93

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 617 DYTLREFLVSWRdqpaRRIFHYHFQVWPDHGVPADPGCVLNFLQDVNTRQSHLAQAGEKPG---PICVHCSAGIGRTGTF 693
Cdd:cd14598  94 GLKIKHLLTGQE----RTVWHLQYTDWPEHGCPEDLKGFLSYLEEIQSVRRHTNSTIDPKSpnpPVLVHCSAGVGRTGVV 169

                       170       180       190       200       210
                ....*....|....*....|....*....|....*....|....*....|....
gi 23344946 694 IVIDMILDQIVRNGLdteIDIQRTIQMVRSQRSGLVQTEAQYKFVYYAVQHYIQ 747
Cdd:cd14598 170 ILSEIMIACLEHNEM---LDIPRVLDMLRQQRMMMVQTLSQYTFVYKVLIQFLK 220
R-PTPc-Q cd14616
catalytic domain of receptor-type tyrosine-protein phosphatase Q; Receptor-type ...
 545-739 2.18e-36

catalytic domain of receptor-type tyrosine-protein phosphatase Q; Receptor-type tyrosine-protein phosphatase Q (PTPRQ or R-PTP-Q), also called phosphatidylinositol phosphatase PTPRQ, belongs to the family of classical tyrosine-specific protein tyrosine phosphatases (PTPs). PTPs (EC 3.1.3.48) catalyze the dephosphorylation of phosphotyrosine peptides. PTPRQ is a member of the R3 subfamily of receptor-type phosphotyrosine phosphatases (RPTP), characterized by a unique modular composition consisting of multiple extracellular fibronectin type III (FN3) repeats (18 in PTPRQ) and a single (most RPTP subtypes have two) cytoplasmic catalytic PTP domain. It displays low tyrosine-protein phosphatase activity; rather, it functions as a phosphatidylinositol phosphatase required for auditory processes. It regulates the levels of phosphatidylinositol 4,5-bisphosphate (PIP2) in the basal region of hair bundles. It can dephosphorylate a broad range of phosphatidylinositol phosphates, including phosphatidylinositol 3,4,5-trisphosphate and most phosphatidylinositol monophosphates and diphosphates.


Pssm-ID: 350464 [Multi-domain]  Cd Length: 224  Bit Score: 136.96  E-value: 2.18e-36
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 545 YIATQGCLltqqVNTVTDFWNMVWQENTRVIVMTTKEYERGKEKCARYWPDEGRS-EQFGHARIQCVSENSTSDYTLREF 623
Cdd:cd14616  42 FIATQGPL----PGTVGDFWRMVWETRAKTIVMLTQCFEKGRIRCHQYWPEDNKPvTVFGDIVITKLMEDVQIDWTIRDL 117

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 624 LVSwRDQPARRIFHYHFQVWPDHGVPADPGCVLNFLQDVNTRQSHlaqageKPGPICVHCSAGIGRTGTFIVIDMILDQI 703
Cdd:cd14616 118 KIE-RHGDYMMVRQCNFTSWPEHGVPESSAPLIHFVKLVRASRAH------DNTPMIVHCSAGVGRTGVFIALDHLTQHI 190

                       170       180       190
                ....*....|....*....|....*....|....*.
gi 23344946 704 vrNGLDTeIDIQRTIQMVRSQRSGLVQTEAQYKFVY 739
Cdd:cd14616 191 --NDHDF-VDIYGLVAELRSERMCMVQNLAQYIFLH 223
PHA02738 PHA02738
hypothetical protein; Provisional
 543-747 7.34e-36

hypothetical protein; Provisional


Pssm-ID: 222923 [Multi-domain]  Cd Length: 320  Bit Score: 138.52  E-value: 7.34e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946  543 KTYIATQGCLLtqqvNTVTDFWNMVWQENTRVIVMTTKEYERGKEKCARYWPD-EGRSEQFGHARIQCVSENSTSDYTLR 621
Cdd:PHA02738  90 KKFICGQAPTR----QTCYDFYRMLWMEHVQIIVMLCKKKENGREKCFPYWSDvEQGSIRFGKFKITTTQVETHPHYVKS 165

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946  622 EFLVSWRDQPARRIFHYHFQVWPDHGVPADPGCVLNFLQDVNTRQSHLA----QAGEK---PGPICVHCSAGIGRTGTFI 694
Cdd:PHA02738 166 TLLLTDGTSATQTVTHFNFTAWPDHDVPKNTSEFLNFVLEVRQCQKELAqeslQIGHNrlqPPPIVVHCNAGLGRTPCYC 245

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|...
gi 23344946  695 VIDMildQIVRNGLDTEIDIQRTIQMVRSQRSGLVQTEAQYKFVYYAVQHYIQ 747
Cdd:PHA02738 246 VVDI---SISRFDACATVSIPSIVSSIRNQRYYSLFIPFQYFFCYRAVKRYVN 295
PTPc_motif smart00404
Protein tyrosine phosphatase, catalytic domain motif;
637-742 3.25e-35

Protein tyrosine phosphatase, catalytic domain motif;


Pssm-ID: 214649 [Multi-domain]  Cd Length: 105  Bit Score: 129.40  E-value: 3.25e-35
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946    637 HYHFQVWPDHGVPADPGCVLNFLQDVNTRQSHLAQAGekpgPICVHCSAGIGRTGTFIVIDMILDQIvRNGlDTEIDIQR 716
Cdd:smart00404   4 HYHYTGWPDHGVPESPDSILELLRAVKKNLNQSESSG----PVVVHCSAGVGRTGTFVAIDILLQQL-EAE-AGEVDIFD 77

                           90       100
                   ....*....|....*....|....*.
gi 23344946    717 TIQMVRSQRSGLVQTEAQYKFVYYAV 742
Cdd:smart00404  78 TVKELRSQRPGMVQTEEQYLFLYRAL 103
PTPc_DSPc smart00012
Protein tyrosine phosphatase, catalytic domain, undefined specificity; Protein tyrosine ...
 637-742 3.25e-35

Protein tyrosine phosphatase, catalytic domain, undefined specificity; Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.


Pssm-ID: 214469 [Multi-domain]  Cd Length: 105  Bit Score: 129.40  E-value: 3.25e-35
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946    637 HYHFQVWPDHGVPADPGCVLNFLQDVNTRQSHLAQAGekpgPICVHCSAGIGRTGTFIVIDMILDQIvRNGlDTEIDIQR 716
Cdd:smart00012   4 HYHYTGWPDHGVPESPDSILELLRAVKKNLNQSESSG----PVVVHCSAGVGRTGTFVAIDILLQQL-EAE-AGEVDIFD 77

                           90       100
                   ....*....|....*....|....*.
gi 23344946    717 TIQMVRSQRSGLVQTEAQYKFVYYAV 742
Cdd:smart00012  78 TVKELRSQRPGMVQTEEQYLFLYRAL 103
PTPc-N14 cd14599
catalytic domain of tyrosine-protein phosphatase non-receptor type 14; Tyrosine-protein ...
 545-747 1.06e-34

catalytic domain of tyrosine-protein phosphatase non-receptor type 14; Tyrosine-protein phosphatase non-receptor type 14 (PTPN14), also called protein-tyrosine phosphatase pez, belongs to the family of classical tyrosine-specific protein tyrosine phosphatases (PTPs). PTPs (EC 3.1.3.48) catalyze the dephosphorylation of phosphotyrosine peptides. PTPN14 is a potential tumor suppressor and plays a regulatory role in the Hippo and Wnt/beta-catenin signaling pathways. It contains an N-terminal FERM domain and a C-terminal catalytic PTP domain, separated by a long intervening sequence.


Pssm-ID: 350447 [Multi-domain]  Cd Length: 287  Bit Score: 134.35  E-value: 1.06e-34
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 545 YIATQGCLltqqVNTVTDFWNMVWQENTRVIVMTTKEYERGKEKCARYWPDEG---RSEQFGHARIQCVSENSTSDYTLR 621
Cdd:cd14599  84 YIATQGPL----PHTCHDFWQMVWEQGVNVIAMVTAEEEGGRSKSHRYWPKLGskhSSATYGKFKVTTKFRTDSGCYATT 159

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 622 ----EFLVSWRDqpaRRIFHYHFQVWPDHGVPADPGCVLNFLQDVNTRQSH----LAQAGEKPGPICVHCSAGIGRTGTF 693
Cdd:cd14599 160 glkvKHLLSGQE---RTVWHLQYTDWPDHGCPEEVQGFLSYLEEIQSVRRHtnsmLDSTKNCNPPIVVHCSAGVGRTGVV 236

                       170       180       190       200       210
                ....*....|....*....|....*....|....*....|....*....|....
gi 23344946 694 IVIDMILDQIVRNgldTEIDIQRTIQMVRSQRSGLVQTEAQYKFVYYAVQHYIQ 747
Cdd:cd14599 237 ILTELMIGCLEHN---EKVEVPVMLRHLREQRMFMIQTIAQYKFVYQVLIQFLK 287
R-PTPc-typeIIb-2 cd14556
PTP domain of type IIb (or R2B) subfamily receptor-type tyrosine-protein phosphatases, repeat ...
 543-739 8.42e-34

PTP domain of type IIb (or R2B) subfamily receptor-type tyrosine-protein phosphatases, repeat 2; The type IIb (or R2B) subfamily of receptor protein tyrosine phosphatases (RPTPs) include the prototypical member PTPmu (or PTPRM), PCP-2 (or PTPRU), PTPrho (or PTPRT), and PTPkappa (or PTPRK). They belong to the larger family of classical tyrosine-specific protein tyrosine phosphatases (PTPs). PTPs (EC 3.1.3.48) catalyze the dephosphorylation of phosphotyrosine peptides. Type IIb RPTPs mediate cell-cell adhesion though homophilic interactions; their ligand is an identical molecule on an adjacent cell. No heterophilic interactions between the subfamily members have been observed. They also commonly function as tumor suppressors. They contain an extracellular region with an Meprin-A5 (neuropilin)-mu (MAM) domain, an immunoglobulin (Ig) domain, and four fibronectin type III (FN3) repeats, a transmembrane domain, and an intracellular segment with a juxtamembrane domain similar to the cytoplasmic domain of classical cadherins and two tandem PTP domains. This model represents the second (repeat 2) PTP domain.


Pssm-ID: 350404 [Multi-domain]  Cd Length: 201  Bit Score: 128.68  E-value: 8.42e-34
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 543 KTYIATQGCLltqqVNTVTDFWNMVWQENTRVIVMTTkEYERGKEKCARYWPDEGRSeQFGHARIQCVSENSTSDYTLRE 622
Cdd:cd14556  14 AAFIVTQHPL----PNTVTDFWRLVYDYGCTSIVMLN-QLDPKDQSCPQYWPDEGSG-TYGPIQVEFVSTTIDEDVISRI 87

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 623 FLVS--WRDQPARRIFHyHFQV--WPDHG-VPADPGCVLNFLQDVNTRQshlAQAGEkpGPICVHCSAGIGRTGTFIVID 697
Cdd:cd14556  88 FRLQntTRPQEGYRMVQ-QFQFlgWPRDRdTPPSKRALLKLLSEVEKWQ---EQSGE--GPIVVHCLNGVGRSGVFCAIS 161

                       170       180       190       200
                ....*....|....*....|....*....|....*....|..
gi 23344946 698 MILDQIVRNGLdteIDIQRTIQMVRSQRSGLVQTEAQYKFVY 739
Cdd:cd14556 162 SVCERIKVENV---VDVFQAVKTLRNHRPNMVETEEQYKFCY 200
SH2 pfam00017
SH2 domain;
211-286 1.69e-32

SH2 domain;


Pssm-ID: 425423 [Multi-domain]  Cd Length: 77  Bit Score: 120.40  E-value: 1.69e-32
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 23344946   211 WFHGNLSGKEAEKLILERGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRWQDK-KYDVGGGESFGTLSELIDHY 286
Cdd:pfam00017   1 WYHGKISRQEAERLLLNGKPDGTFLVRESESTPGGYTLSVRDDGKVKHYKIQSTDNgGYYISGGVKFSSLAELVEHY 77
PHA02746 PHA02746
protein tyrosine phosphatase; Provisional
 551-746 5.64e-32

protein tyrosine phosphatase; Provisional


Pssm-ID: 165113 [Multi-domain]  Cd Length: 323  Bit Score: 127.45  E-value: 5.64e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946  551 CLLTQQVNTVTDFWNMVWQENTRVIVMTTkEYERGKEKCARYWPDEGRSE-QFGH--ARIQCVSENSTSDYTlREFLVSW 627
Cdd:PHA02746 117 CAQGPKEDTSEDFFKLISEHESQVIVSLT-DIDDDDEKCFELWTKEEDSElAFGRfvAKILDIIEELSFTKT-RLMITDK 194

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946  628 RDQPARRIFHYHFQVWPDHGVPADPGCVLNFLQDVNTRQSHLAQAGE----KPGPICVHCSAGIGRTGTFIVIDMILDQI 703
Cdd:PHA02746 195 ISDTSREIHHFWFPDWPDNGIPTGMAEFLELINKVNEEQAELIKQADndpqTLGPIVVHCSAGIGRAGTFCAIDNALEQL 274

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|...
gi 23344946  704 VRnglDTEIDIQRTIQMVRSQRSGLVQTEAQYKFVYYAVQHYI 746
Cdd:PHA02746 275 EK---EKEVCLGEIVLKIRKQRHSSVFLPEQYAFCYKALKYAI 314
SH2_N-SH2_SHP_like cd10340
N-terminal Src homology 2 (N-SH2) domain found in SH2 domain Phosphatases (SHP) proteins; The ...
 211-306 8.48e-30

N-terminal Src homology 2 (N-SH2) domain found in SH2 domain Phosphatases (SHP) proteins; The SH2 domain phosphatases (SHP-1, SHP-2/Syp, Drosophila corkscrew (csw), and Caenorhabditis elegans Protein Tyrosine Phosphatase (Ptp-2)) are cytoplasmic signaling enzymes. They are both targeted and regulated by interactions of their SH2 domains with phosphotyrosine docking sites. These proteins contain two SH2 domains (N-SH2, C-SH2) followed by a tyrosine phosphatase (PTP) domain, and a C-terminal extension. Shp1 and Shp2 have two tyrosyl phosphorylation sites in their C-tails, which are phosphorylated differentially by receptor and nonreceptor PTKs. Csw retains the proximal tyrosine and Ptp-2 lacks both sites. Shp-binding proteins include receptors, scaffolding adapters, and inhibitory receptors. Some of these bind both Shp1 and Shp2 while others bind only one. Most proteins that bind a Shp SH2 domain contain one or more immuno-receptor tyrosine-based inhibitory motifs (ITIMs): [IVL]xpYxx[IVL]. Shp1 N-SH2 domain blocks the catalytic domain and keeps the enzyme in the inactive conformation, and is thus believed to regulate the phosphatase activity of SHP-1. Its C-SH2 domain is thought to be involved in searching for phosphotyrosine activators. The SHP2 N-SH2 domain is a conformational switch; it either binds and inhibits the phosphatase, or it binds phosphoproteins and activates the enzyme. The C-SH2 domain contributes binding energy and specificity, but it does not have a direct role in activation. Csw SH2 domain function is essential, but either SH2 domain can fulfill this requirement. The role of the csw SH2 domains during Sevenless receptor tyrosine kinase (SEV) signaling is to bind Daughter of Sevenless rather than activated SEV. Ptp-2 acts in oocytes downstream of sheath/oocyte gap junctions to promote major sperm protein (MSP)-induced MAP Kinase (MPK-1) phosphorylation. Ptp-2 functions in the oocyte cytoplasm, not at the cell surface to inhibit multiple RasGAPs, resulting in sustained Ras activation. It is thought that MSP triggers PTP-2/Ras activation and ROS production to stimulate MPK-1 activity essential for oocyte maturation and that secreted MSP domains and Cu/Zn superoxide dismutases function antagonistically to control ROS and MAPK signaling. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.


Pssm-ID: 198203  Cd Length: 99  Bit Score: 113.65  E-value: 8.48e-30
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 211 WFHGNLSGKEAEKLILERGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRWQDKKYDVGGGESFGTLSELIDHYKRNP 290
Cdd:cd10340   2 WFHPVISGIEAENLLKTRGVDGSFLARPSKSNPGDFTLSVRRGDEVTHIKIQNTGDYYDLYGGEKFATLSELVQYYMEQH 81

                        90
                ....*....|....*...
gi 23344946 291 --MVETCGTVVHLRQPFN 306
Cdd:cd10340  82 gqLREKNGDVIELKYPLN 99
PHA02747 PHA02747
protein tyrosine phosphatase; Provisional
 543-746 1.32e-29

protein tyrosine phosphatase; Provisional


Pssm-ID: 165114 [Multi-domain]  Cd Length: 312  Bit Score: 120.11  E-value: 1.32e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946  543 KTYIATQGCLltqqVNTVTDFWNMVWQENTRVIVM-TTKEYERGKEKCARYW-PDEGRSEQFGHARIQCVSENSTSDYTL 620
Cdd:PHA02747  93 KKFIATQGPF----AETCADFWKAVWQEHCSIIVMlTPTKGTNGEEKCYQYWcLNEDGNIDMEDFRIETLKTSVRAKYIL 168

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946  621 REFLVSWRD-QPARRIFHYHFQVWPDHGVPADPGCVLNFLQDVN-TRQSHLAQAGEKPG---PICVHCSAGIGRTGTFIV 695
Cdd:PHA02747 169 TLIEITDKIlKDSRKISHFQCSEWFEDETPSDHPDFIKFIKIIDiNRKKSGKLFNPKDAllcPIVVHCSDGVGKTGIFCA 248

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|...
gi 23344946  696 IDMILDQIVrngLDTEIDIQRTIQMVRSQRSGLVQTEAQYKFVY--YAVQHYI 746
Cdd:PHA02747 249 VDICLNQLV---KRKAICLAKTAEKIREQRHAGIMNFDDYLFIQpgYEVLHYF 298
SH2 smart00252
Src homology 2 domains; Src homology 2 domains bind phosphotyrosine-containing polypeptides ...
 211-290 1.55e-29

Src homology 2 domains; Src homology 2 domains bind phosphotyrosine-containing polypeptides via 2 surface pockets. Specificity is provided via interaction with residues that are distinct from the phosphotyrosine. Only a single occurrence of a SH2 domain has been found in S. cerevisiae.


Pssm-ID: 214585 [Multi-domain]  Cd Length: 84  Bit Score: 112.32  E-value: 1.55e-29
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946    211 WFHGNLSGKEAEKLiLERGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRWQDK-KYDVGGGESFGTLSELIDHYKRN 289
Cdd:smart00252   3 WYHGFISREEAEKL-LKNEGDGDFLVRDSESSPGDYVLSVRVKGKVKHYRIRRNEDgKFYLEGGRKFPSLVELVEHYQKN 81


                   .
gi 23344946    290 P 290
Cdd:smart00252  82 S 82
COG5599 COG5599
Protein tyrosine phosphatase [Signal transduction mechanisms];
543-749 5.09e-29

Protein tyrosine phosphatase [Signal transduction mechanisms];


Pssm-ID: 444335 [Multi-domain]  Cd Length: 282  Bit Score: 117.50  E-value: 5.09e-29
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 543 KTYIATQGCLLTQQVntvtDFWNMVWQENTRVIVMTT--KEYERGKEKCARYWPDEGRseqfgHARIQCVSENSTSDY-- 618
Cdd:COG5599  77 HRYIATQYPLEEQLE----DFFQMLFDNNTPVLVVLAsdDEISKPKVKMPVYFRQDGE-----YGKYEVSSELTESIQlr 147

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 619 ---TLREFLVSWRD--QPARRIFHYHFQVWPDHGvPADPGCVLNFLQDVNtrqsHLAQAGEKP-GPICVHCSAGIGRTGT 692
Cdd:COG5599 148 dgiEARTYVLTIKGtgQKKIEIPVLHVKNWPDHG-AISAEALKNLADLID----KKEKIKDPDkLLPVVHCRAGVGRTGT 222

                       170       180       190       200       210
                ....*....|....*....|....*....|....*....|....*....|....*....
gi 23344946 693 FIVIdMILDQIVRNGLDTEIDIQRT-IQMVRSQRSGLVQTEAQY-KFVYYAVQHYIQTL 749
Cdd:COG5599 223 LIAC-LALSKSINALVQITLSVEEIvIDMRTSRNGGMVQTSEQLdVLVKLAEQQIRPLL 280
PHA02742 PHA02742
protein tyrosine phosphatase; Provisional
 541-749 2.75e-28

protein tyrosine phosphatase; Provisional


Pssm-ID: 165109 [Multi-domain]  Cd Length: 303  Bit Score: 116.25  E-value: 2.75e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946  541 MFKTYIATQGCLltqqVNTVTDFWNMVWQENTRVIVMTTKEYERGKEKCARYWPDEGRSE-QFGHARIQCVSENSTSDYT 619
Cdd:PHA02742  91 AKGRFICTQAPL----EETALDFWQAIFQDQVRVIVMITKIMEDGKEACYPYWMPHERGKaTHGEFKIKTKKIKSFRNYA 166

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946  620 LREFLVSWRDQPAR-RIFHYHFQVWPDHGVPADPGCVLNFLQDVNTRQS--HLAQAGE---KPGPICVHCSAGIGRTGTF 693
Cdd:PHA02742 167 VTNLCLTDTNTGASlDIKHFAYEDWPHGGLPRDPNKFLDFVLAVREADLkaDVDIKGEnivKEPPILVHCSAGLDRAGAF 246

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 23344946  694 IVIDMILDQIVRNGLdteIDIQRTIQMVRSQRSGLVQTEAQYKFVYYAVQHYIQTL 749
Cdd:PHA02742 247 CAIDICISKYNERAI---IPLLSIVRDLRKQRHNCLSLPQQYIFCYFIVLIFAKLM 299
SH2 cd00173
Src homology 2 (SH2) domain; In general, SH2 domains are involved in signal transduction; they ...
 211-286 1.35e-24

Src homology 2 (SH2) domain; In general, SH2 domains are involved in signal transduction; they bind pTyr-containing polypeptide ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. They are present in a wide array of proteins including: adaptor proteins (Nck1, Crk, Grb2), scaffolds (Slp76, Shc, Dapp1), kinases (Src, Syk, Fps, Tec), phosphatases (Shp-1, Shp-2), transcription factors (STAT1), Ras signaling molecules (Ras-Gap), ubiquitination factors (c-Cbl), cytoskeleton regulators (Tensin), signal regulators (SAP), and phospholipid second messengers (PLCgamma), amongst others.


Pssm-ID: 198173 [Multi-domain]  Cd Length: 79  Bit Score: 97.91  E-value: 1.35e-24
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 23344946 211 WFHGNLSGKEAEKLiLERGKNGSFLVRESQSKPGDFVLSVRTD-DKVTHVMIRWQDKKYDVGGGES--FGTLSELIDHY 286
Cdd:cd00173   2 WFHGSISREEAERL-LRGKPDGTFLVRESSSEPGDYVLSVRSGdGKVKHYLIERNEGGYYLLGGSGrtFPSLPELVEHY 79
SH2_csk_like cd09937
Src homology 2 (SH2) domain found in Carboxyl-Terminal Src Kinase (Csk); Both the C-terminal ...
 211-289 8.84e-21

Src homology 2 (SH2) domain found in Carboxyl-Terminal Src Kinase (Csk); Both the C-terminal Src kinase (CSK) and CSK-homologous kinase (CHK) are members of the CSK-family of protein tyrosine kinases. These proteins suppress activity of Src-family kinases (SFK) by selectively phosphorylating the conserved C-terminal tail regulatory tyrosine by a similar mechanism. CHK is also capable of inhibiting SFKs by a non-catalytic mechanism that involves binding of CHK to SFKs to form stable protein complexes. The unphosphorylated form of SFKs is inhibited by CSK and CHK by a two-step mechanism. The first step involves the formation of a complex of SFKs with CSK/CHK with the SFKs in the complex are inactive. The second step, involves the phosphorylation of the C-terminal tail tyrosine of SFKs, which then dissociates and adopt an inactive conformation. The structural basis of how the phosphorylated SFKs dissociate from CSK/CHK to adopt the inactive conformation is not known. The inactive conformation of SFKs is stabilized by two intramolecular inhibitory interactions: (a) the pYT:SH2 interaction in which the phosphorylated C-terminal tail tyrosine (YT) binds to the SH2 domain, and (b) the linker:SH3 interaction of which the SH2-kinase domain linker binds to the SH3 domain. SFKs are activated by multiple mechanisms including binding of the ligands to the SH2 and SH3 domains to displace the two inhibitory intramolecular interactions, autophosphorylation, and dephosphorylation of YT. By selective phosphorylation and the non-catalytic inhibitory mechanism CSK and CHK are able to inhibit the active forms of SFKs. CSK and CHK are regulated by phosphorylation and inter-domain interactions. They both contain SH3, SH2, and kinase domains separated by the SH3-SH2 connector and SH2 kinase linker, intervening segments separating the three domains. They lack a conserved tyrosine phosphorylation site in the kinase domain and the C-terminal tail regulatory tyrosine phosphorylation site. The CSK SH2 domain is crucial for stabilizing the kinase domain in the active conformation. A disulfide bond here regulates CSK kinase activity. The subcellular localization and activity of CSK are regulated by its SH2 domain. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.


Pssm-ID: 198190  Cd Length: 98  Bit Score: 87.73  E-value: 8.84e-21
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 23344946 211 WFHGNLSGKEAEKLILERgKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRWQDKKYDVGGGESFGTLSELIDHYKRN 289
Cdd:cd09937   5 WFHGKISREEAERLLQPP-EDGLFLVRESTNYPGDYTLCVSFEGKVEHYRVIYRNGKLTIDEEEYFENLIQLVEHYTKD 82
SH2_Src_family cd09933
Src homology 2 (SH2) domain found in the Src family of non-receptor tyrosine kinases; The Src ...
 211-289 4.09e-20

Src homology 2 (SH2) domain found in the Src family of non-receptor tyrosine kinases; The Src family kinases are nonreceptor tyrosine kinases that have been implicated in pathways regulating proliferation, angiogenesis, invasion and metastasis, and bone metabolism. It is thought that transforming ability of Src is linked to its ability to activate key signaling molecules in these pathways, rather than through direct activity. As such blocking Src activation has been a target for drug companies. Src family members can be divided into 3 groups based on their expression pattern: 1) Src, Fyn, and Yes; 2) Blk, Fgr, Hck, Lck, and Lyn; and 3) Frk-related kinases Frk/Rak and Iyk/Bsk Of these, cellular c-Src is the best studied and most frequently implicated in oncogenesis. The c-Src contains five distinct regions: a unique N-terminal domain, an SH3 domain, an SH2 domain, a kinase domain and a regulatory tail, as do the other members of the family. Src exists in both active and inactive conformations. Negative regulation occurs through phosphorylation of Tyr, resulting in an intramolecular association between phosphorylated Tyr and the SH2 domain of SRC, which locks the protein in a closed conformation. Further stabilization of the inactive state occurs through interactions between the SH3 domain and a proline-rich stretch of residues within the kinase domain. Conversely, dephosphorylation of Tyr allows SRC to assume an open conformation. Full activity requires additional autophosphorylation of a Tyr residue within the catalytic domain. Loss of the negative-regulatory C-terminal segment has been shown to result in increased activity and transforming potential. Phosphorylation of the C-terminal Tyr residue by C-terminal Src kinase (Csk) and Csk homology kinase results in increased intramolecular interactions and consequent Src inactivation. Specific phosphatases, protein tyrosine phosphatase a (PTPa) and the SH-containing phosphatases SHP1/SHP2, have also been shown to take a part in Src activation. Src is also activated by direct binding of focal adhesion kinase (Fak) and Crk-associated substrate (Cas) to the SH2 domain. SRC activity can also be regulated by numerous receptor tyrosine kinases (RTKs), such as Her2, epidermal growth factor receptor (EGFR), fibroblast growth factor receptor, platelet-derived growth factor receptor (PDGFR), and vascular endothelial growth factor receptor (VEGFR). In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.


Pssm-ID: 199827  Cd Length: 101  Bit Score: 86.10  E-value: 4.09e-20
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 211 WFHGNLSGKEAEK-LILERGKNGSFLVRESQSKPGDFVLSVRTDDK-----VTHVMIRwqdkKYDVGGG-----ESFGTL 279
Cdd:cd09933   5 WFFGKIKRKDAEKlLLAPGNPRGTFLIRESETTPGAYSLSVRDGDDargdtVKHYRIR----KLDNGGYyittrATFPTL 80

                        90
                ....*....|
gi 23344946 280 SELIDHYKRN 289
Cdd:cd09933  81 QELVQHYSKD 90
R-PTPc-T-2 cd14634
PTP domain of receptor-type tyrosine-protein phosphatase T, repeat 2; Receptor-type ...
 558-739 6.00e-20

PTP domain of receptor-type tyrosine-protein phosphatase T, repeat 2; Receptor-type tyrosine-protein phosphatase T (PTPRT), also known as receptor-type tyrosine-protein phosphatase rho (RPTP-rho or PTPrho), belongs to the type IIb subfamily of receptor protein tyrosine phosphatases (RPTPs), which belong to the larger family of classical tyrosine-specific protein tyrosine phosphatases (PTPs). PTPs (EC 3.1.3.48) catalyze the dephosphorylation of phosphotyrosine peptides. PTPRT is highly expressed in the nervous system and it plays a critical role in regulation of synaptic formation and neuronal development. It dephosphorylates a specific tyrosine residue in syntaxin-binding protein 1, a key component of synaptic vesicle fusion machinery, and regulates its binding to syntaxin 1. PTPRT has been identified as a potential candidate gene for autism spectrum disorder (ASD) susceptibility. It contains an extracellular region with an Meprin-A5 (neuropilin)-mu (MAM) domain, an immunoglobulin (Ig) domain, and four fibronectin type III (FN3) repeats, a transmembrane domain, and an intracellular segment with a juxtamembrane domain similar to the cytoplasmic domain of classical cadherins and two tandem PTP domains. This model represents the second (repeat 2) PTP domain.


Pssm-ID: 350482 [Multi-domain]  Cd Length: 206  Bit Score: 89.31  E-value: 6.00e-20
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 558 NTVTDFWNMVWQENTRVIVMTTKEyeRGKEKCARYWPdEGRSEQFGHARIQCVSENSTSDYTLREFLVSWRDQPA---RR 634
Cdd:cd14634  25 NTVADFWRLVFDYNCSSVVMLNEM--DAAQLCMQYWP-EKTSCCYGPIQVEFVSADIDEDIISRIFRICNMARPQdgyRI 101

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 635 IFHYHFQVWPDH-GVPADPGCVLNFLQDVNTRQShlaQAGEKPGPICVHCSAGIGRTGTFIVIDMILDQIVRNGLdteID 713
Cdd:cd14634 102 VQHLQYIGWPAYrDTPPSKRSILKVVRRLEKWQE---QYDGREGRTVVHCLNGGGRSGTFCAICSVCEMIQQQNI---ID 175

                       170       180
                ....*....|....*....|....*.
gi 23344946 714 IQRTIQMVRSQRSGLVQTEAQYKFVY 739
Cdd:cd14634 176 VFHTVKTLRNNKSNMVETLEQYKFVY 201
SH2_N-SH2_PLC_gamma_like cd10341
N-terminal Src homology 2 (N-SH2) domain in Phospholipase C gamma; Phospholipase C gamma is a ...
 211-291 1.57e-19

N-terminal Src homology 2 (N-SH2) domain in Phospholipase C gamma; Phospholipase C gamma is a signaling molecule that is recruited to the C-terminal tail of the receptor upon autophosphorylation of a highly conserved tyrosine. PLCgamma is composed of a Pleckstrin homology (PH) domain followed by an elongation factor (EF) domain, 2 catalytic regions of PLC domains that flank 2 tandem SH2 domains (N-SH2, C-SH2), and ending with a SH3 domain and C2 domain. N-SH2 SH2 domain-mediated interactions represent a crucial step in transmembrane signaling by receptor tyrosine kinases. SH2 domains recognize phosphotyrosine (pY) in the context of particular sequence motifs in receptor phosphorylation sites. Both N-SH2 and C-SH2 have a very similar binding affinity to pY. But in growth factor stimulated cells these domains bind to different target proteins. N-SH2 binds to pY containing sites in the C-terminal tails of tyrosine kinases and other receptors. Recently it has been shown that this interaction is mediated by phosphorylation-independent interactions between a secondary binding site found exclusively on the N-SH2 domain and a region of the FGFR1 tyrosine kinase domain. This secondary site on the SH2 cooperates with the canonical pY site to regulate selectivity in mediating a specific cellular process. C-SH2 binds to an intramolecular site on PLCgamma itself which allows it to hydrolyze phosphatidylinositol-4,5-bisphosphate into diacylglycerol and inositol triphosphate. These then activate protein kinase C and release calcium. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.


Pssm-ID: 199829  Cd Length: 99  Bit Score: 84.32  E-value: 1.57e-19
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 211 WFHGNLSG--KEAEKLILE--RGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRWQD----KKYDVGGGESFGTLSEL 282
Cdd:cd10341   6 WFHGKLGDgrDEAEKLLLEycEGGDGTFLVRESETFVGDYTLSFWRNGKVQHCRIRSRQengeKKYYLTDNLVFDSLYEL 85


                ....*....
gi 23344946 283 IDHYKRNPM 291
Cdd:cd10341  86 IDYYRQNPL 94
SH2_ABL cd09935
Src homology 2 (SH2) domain found in Abelson murine lymphosarcoma virus (ABL) proteins; ...
 209-290 4.87e-19

Src homology 2 (SH2) domain found in Abelson murine lymphosarcoma virus (ABL) proteins; ABL-family proteins are highly conserved tyrosine kinases. Each ABL protein contains an SH3-SH2-TK (Src homology 3-Src homology 2-tyrosine kinase) domain cassette, which confers autoregulated kinase activity and is common among nonreceptor tyrosine kinases. Several types of posttranslational modifications control ABL catalytic activity, subcellular localization, and stability, with consequences for both cytoplasmic and nuclear ABL functions. Binding partners provide additional regulation of ABL catalytic activity, substrate specificity, and downstream signaling. By combining this cassette with actin-binding and -bundling domain, ABL proteins are capable of connecting phosphoregulation with actin-filament reorganization. Vertebrate paralogs, ABL1 and ABL2, have evolved to perform specialized functions. ABL1 includes nuclear localization signals and a DNA binding domain which is used to mediate DNA damage-repair functions, while ABL2 has additional binding capacity for actin and for microtubules to enhance its cytoskeletal remodeling functions. SH2 is involved in several autoinhibitory mechanism that constrain the enzymatic activity of the ABL-family kinases. In one mechanism SH2 and SH3 cradle the kinase domain while a cap sequence stabilizes the inactive conformation resulting in a locked inactive state. Another involves phosphatidylinositol 4,5-bisphosphate (PIP2) which binds the SH2 domain through residues normally required for phosphotyrosine binding in the linker segment between the SH2 and kinase domains. The SH2 domain contributes to ABL catalytic activity and target site specificity. It is thought that the ABL catalytic site and SH2 pocket have coevolved to recognize the same sequences. Recent work now supports a hierarchical processivity model in which the substrate target site most compatible with ABL kinase domain preferences is phosphorylated with greatest efficiency. If this site is compatible with the ABL SH2 domain specificity, it will then reposition and dock in the SH2 pocket. This mechanism also explains how ABL kinases phosphorylates poor targets on the same substrate if they are properly positioned and how relatively poor substrate proteins might be recruited to ABL through a complex with strong substrates that can also dock with the SH2 pocket. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.


Pssm-ID: 198189  Cd Length: 94  Bit Score: 82.82  E-value: 4.87e-19
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 209 YTWFHGNLSGKEAEkLILERGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMI-RWQDKKYDVGGGESFGTLSELIDHYK 287
Cdd:cd09935   3 HSWYHGPISRNAAE-YLLSSGINGSFLVRESESSPGQYSISLRYDGRVYHYRIsEDSDGKVYVTQEHRFNTLAELVHHHS 81


                ...
gi 23344946 288 RNP 290
Cdd:cd09935  82 KNA 84
R5-PTP-2 cd14550
PTP-like domain of R5 subfamily receptor-type tyrosine-protein phosphatases, repeat 2; The R5 ...
 545-739 7.74e-19

PTP-like domain of R5 subfamily receptor-type tyrosine-protein phosphatases, repeat 2; The R5 subfamily of receptor-type phosphotyrosine phosphatases (RPTP) is composed of receptor-type tyrosine-protein phosphatase Z (PTPRZ) and G (PTPRG). They belong to the family of classical tyrosine-specific protein tyrosine phosphatases (PTPs). PTPs (EC 3.1.3.48) catalyze the dephosphorylation of phosphotyrosine peptides. They are type 1 integral membrane proteins consisting of an extracellular region with a carbonic anhydrase-like (CAH) and a fibronectin type III (FN3) domains, and an intracellular region with a catalytic PTP domain (repeat 1) proximal to the membrane, and a catalytically inactive PTP-fold domain (repeat 2) distal to the membrane. This model represents the inactive PTP-like domain (repeat 2).


Pssm-ID: 350398 [Multi-domain]  Cd Length: 200  Bit Score: 85.84  E-value: 7.74e-19
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 545 YIATQGCLLtqqvNTVTDFWNMVWQENTRVIVMTTKEYErgKEKCARYWPDEGRSEQFGHARIQCVSE-----NSTSDYT 619
Cdd:cd14550  16 FIITQHPLE----HTIKDFWQMIWDHNSQTIVMLTDNEL--NEDEPIYWPTKEKPLECETFKVTLSGEdhsclSNEIRLI 89

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 620 LREFLV-SWRDQPARRIFHYHFQVWPDHGVPadPGCVLNFLQDVntrQSHLAQageKPGPICVHCSAGIGRTGTFIVIDM 698
Cdd:cd14550  90 VRDFILeSTQDDYVLEVRQFQCPSWPNPCSP--IHTVFELINTV---QEWAQQ---RDGPIVVHDRYGGVQAATFCALTT 161

                       170       180       190       200
                ....*....|....*....|....*....|....*....|...
gi 23344946 699 ILDQivrngLDTE--IDIQRTIQMVRSQRSGLVQTEAQYKFVY 739
Cdd:cd14550 162 LHQQ-----LEHEssVDVYQVAKLYHLMRPGVFTSKEDYQFLY 199
SH2_DAPP1_BAM32_like cd10355
Src homology 2 domain found in dual adaptor for phosphotyrosine and 3-phosphoinositides ( ...
 206-292 8.05e-19

Src homology 2 domain found in dual adaptor for phosphotyrosine and 3-phosphoinositides ( DAPP1)/B lymphocyte adaptor molecule of 32 kDa (Bam32)-like proteins; DAPP1/Bam32 contains a putative myristoylation site at its N-terminus, followed by a SH2 domain, and a pleckstrin homology (PH) domain at its C-terminus. DAPP1 could potentially be recruited to the cell membrane by any of these domains. Its putative myristoylation site could facilitate the interaction of DAPP1 with the lipid bilayer. Its SH2 domain may also interact with phosphotyrosine residues on membrane-associated proteins such as activated tyrosine kinase receptors. And finally its PH domain exhibits a high-affinity interaction with the PtdIns(3,4,5)P(3) PtdIns(3,4)P(2) second messengers produced at the cell membrane following the activation of PI 3-kinases. DAPP1 is thought to interact with both tyrosine phosphorylated proteins and 3-phosphoinositides and therefore may play a role in regulating the location and/or activity of such proteins(s) in response to agonists that elevate PtdIns(3,4,5)P(3) and PtdIns(3,4)P(2). This protein is likely to play an important role in triggering signal transduction pathways that lie downstream from receptor tyrosine kinases and PI 3-kinase. It is likely that DAPP1 functions as an adaptor to recruit other proteins to the plasma membrane in response to extracellular signals. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.


Pssm-ID: 198218  Cd Length: 92  Bit Score: 82.14  E-value: 8.05e-19
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 206 LHGYTWFHGNLSGKEAEKLILERGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRWQDKKYDVGGGEsFGTLSELIDH 285
Cdd:cd10355   3 LQSLGWYHGNLTRHAAEALLLSNGVDGSYLLRNSNEGTGLFSLSVRAKDSVKHFHVEYTGYSFKFGFNE-FSSLQDFVKH 81


                ....*..
gi 23344946 286 YKRNPMV 292
Cdd:cd10355  82 FANQPLI 88
SH2_Nck_family cd09943
Src homology 2 (SH2) domain found in the Nck family; Nck proteins are adaptors that modulate ...
 211-291 7.80e-18

Src homology 2 (SH2) domain found in the Nck family; Nck proteins are adaptors that modulate actin cytoskeleton dynamics by linking proline-rich effector molecules to tyrosine kinases or phosphorylated signaling intermediates. There are two members known in this family: Nck1 (Nckalpha) and Nck2 (Nckbeta and Growth factor receptor-bound protein 4 (Grb4)). They are characterized by having 3 SH3 domains and a C-terminal SH2 domain. Nck1 and Nck2 have overlapping functions as determined by gene knockouts. Both bind receptor tyrosine kinases and other tyrosine-phosphorylated proteins through their SH2 domains. In addition they also bind distinct targets. Neuronal signaling proteins: EphrinB1, EphrinB2, and Disabled-1 (Dab-1) all bind to Nck-2 exclusively. And in the case of PDGFR, Tyr(P)751 binds to Nck1 while Tyr(P)1009 binds to Nck2. Nck1 and Nck2 have a role in the infection process of enteropathogenic Escherichia coli (EPEC). Their SH3 domains are involved in recruiting and activating the N-WASP/Arp2/3 complex inducing actin polymerization resulting in the production of pedestals, dynamic bacteria-presenting protrusions of the plasma membrane. A similar thing occurs in the vaccinia virus where motile plasma membrane projections are formed beneath the virus. Recently it has been shown that the SH2 domains of both Nck1 and Nck2 bind the G-protein coupled receptor kinase-interacting protein 1 (GIT1) in a phosphorylation-dependent manner. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.


Pssm-ID: 198196  Cd Length: 93  Bit Score: 79.48  E-value: 7.80e-18
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 211 WFHGNLSGKEAEKLILERGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRWQDKKYDVgGGESFGTLSELIDHYKRNP 290
Cdd:cd09943   3 WYYGRITRHQAETLLNEHGHEGDFLIRDSESNPGDYSVSLKAPGRNKHFKVQVVDNVYCI-GQRKFHTMDELVEHYKKAP 81


                .
gi 23344946 291 M 291
Cdd:cd09943  82 I 82
SH2_Fps_family cd10361
Src homology 2 (SH2) domain found in feline sarcoma, Fujinami poultry sarcoma, and fes-related ...
 205-289 2.02e-17

Src homology 2 (SH2) domain found in feline sarcoma, Fujinami poultry sarcoma, and fes-related (Fes/Fps/Fer) proteins; The Fps family consists of members Fps/Fes and Fer/Flk/Tyk3. They are cytoplasmic protein-tyrosine kinases implicated in signaling downstream from cytokines, growth factors and immune receptors. Fes/Fps/Fer contains three coiled-coil regions, an SH2 (Src-homology-2) and a TK (tyrosine kinase catalytic) domain signature. Members here include: Fps/Fes, Fer, Kin-31, and In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.


Pssm-ID: 198224  Cd Length: 90  Bit Score: 77.95  E-value: 2.02e-17
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 205 QLHGYTWFHGNLSGKEAEKLiLErgKNGSFLVRESQSKPGD---FVLSVRTDDKVTHVMIRWQDKKYDVGGGESFGTLSE 281
Cdd:cd10361   2 DLENEPYYHGLLPREDAEEL-LK--NDGDFLVRKTEPKGGGkrkLVLSVRWDGKIRHFVINRDDGGKYYIEGKSFKSISE 78


                ....*...
gi 23344946 282 LIDHYKRN 289
Cdd:cd10361  79 LINYYQKT 86
R-PTPc-K-2 cd14636
PTP domain of receptor-type tyrosine-protein phosphatase K, repeat 2; Receptor-type ...
 558-739 2.28e-17

PTP domain of receptor-type tyrosine-protein phosphatase K, repeat 2; Receptor-type tyrosine-protein phosphatase K (PTPRK), also known as receptor-type tyrosine-protein phosphatase kappa (RPTP-kappa or PTPkappa), belongs to the type IIb subfamily of receptor protein tyrosine phosphatases (RPTPs), which belong to the larger family of classical tyrosine-specific protein tyrosine phosphatases (PTPs). PTPs (EC 3.1.3.48) catalyze the dephosphorylation of phosphotyrosine peptides. PTPRK is widely expressed and has been shown to stimulate cell motility and neurite outgrowth. It is required for anti-proliferative and pro-migratory effects of TGF-beta, suggesting a role in regulation, maintenance, and restoration of cell adhesion. It is a potential tumour suppressor in primary central nervous system lymphomas, colorectal cancer, and breast cancer. It contains an extracellular region with an Meprin-A5 (neuropilin)-mu (MAM) domain, an immunoglobulin (Ig) domain, and four fibronectin type III (FN3) repeats, a transmembrane domain, and an intracellular segment with a juxtamembrane domain similar to the cytoplasmic domain of classical cadherins and two tandem PTP domains. This model represents the second (repeat 2) PTP domain.


Pssm-ID: 350484 [Multi-domain]  Cd Length: 206  Bit Score: 81.61  E-value: 2.28e-17
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 558 NTVTDFWNMVWQENTRVIVMTTK-EYERGkekCARYWPDEGrSEQFGHARIQCVSENSTSDYTLREFLVSWRDQPAR--- 633
Cdd:cd14636  25 NTVKDFWRLVYDYGCTSIVMLNEvDLAQG---CPQYWPEEG-MLRYGPIQVECMSCSMDCDVISRIFRICNLTRPQEgyl 100

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 634 RIFHYHFQVWPDH-GVPADPGCVLNFLQDVNTRQShlaQAGEKPGPICVHCSAGIGRTGTFIVIDMILDQIVRNGLdteI 712
Cdd:cd14636 101 MVQQFQYLGWASHrEVPGSKRSFLKLILQVEKWQE---ECDEGEGRTIIHCLNGGGRSGMFCAISIVCEMIKRQNV---V 174

                       170       180
                ....*....|....*....|....*..
gi 23344946 713 DIQRTIQMVRSQRSGLVQTEAQYKFVY 739
Cdd:cd14636 175 DVFHAVKTLRNSKPNMVETPEQYRFCY 201
SH2_Src_Src42 cd10370
Src homology 2 (SH2) domain found in the Src oncogene at 42A (Src42); Src42 is a member of the ...
 211-304 2.67e-17

Src homology 2 (SH2) domain found in the Src oncogene at 42A (Src42); Src42 is a member of the Src non-receptor type tyrosine kinase family of proteins. The integration of receptor tyrosine kinase-induced RAS and Src42 signals by Connector eNhancer of KSR (CNK) as a two-component input is essential for RAF activation in Drosophila. Src42 is present in a wide variety of organisms including: California sea hare, pea aphid, yellow fever mosquito, honey bee, Panamanian leafcutter ant, and sea urchin. Src42 has a unique N-terminal domain, an SH3 domain, an SH2 domain, a kinase domain and a regulatory tail, as do the other members of the family. Like the other members of the Src family the SH2 domain in addition to binding the target, also plays an autoinhibitory role by binding to its C-terminal tail. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.


Pssm-ID: 198233  Cd Length: 96  Bit Score: 77.93  E-value: 2.67e-17
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 211 WFHGNLSGKEAEK-LILERGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRWQDK-KYDVGGGESFGTLSELIDHYKR 288
Cdd:cd10370   5 WYFGKIKRIEAEKkLLLPENEHGAFLIRDSESRHNDYSLSVRDGDTVKHYRIRQLDEgGFFIARRTTFRTLQELVEHYSK 84

                        90
                ....*....|....*.
gi 23344946 289 npmvETCGTVVHLRQP 304
Cdd:cd10370  85 ----DSDGLCVNLRKP 96
SH2_Grb2_like cd09941
Src homology 2 domain found in Growth factor receptor-bound protein 2 (Grb2) and similar ...
 210-290 4.78e-17

Src homology 2 domain found in Growth factor receptor-bound protein 2 (Grb2) and similar proteins; The adaptor proteins here include homologs Grb2 in humans, Sex muscle abnormal protein 5 (Sem-5) in Caenorhabditis elegans, and Downstream of receptor kinase (drk) in Drosophila melanogaster. They are composed of one SH2 and two SH3 domains. Grb2/Sem-5/drk regulates the Ras pathway by linking the tyrosine kinases to the Ras guanine nucleotide releasing protein Sos, which converts Ras to the active GTP-bound state. The SH2 domain of Grb2/Sem-5/drk binds class II phosphotyrosyl peptides while its SH3 domain binds to Sos and Sos-derived, proline-rich peptides. Besides it function in Ras signaling, Grb2 is also thought to play a role in apoptosis. Unlike most SH2 structures in which the peptide binds in an extended conformation (such that the +3 peptide residue occupies a hydrophobic pocket in the protein, conferring a modest degree of selectivity), Grb2 forms several hydrogen bonds via main chain atoms with the side chain of +2 Asn. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.


Pssm-ID: 199828  Cd Length: 95  Bit Score: 77.31  E-value: 4.78e-17
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 210 TWFHGNLSGKEAEKLILERGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIR---------WQDKkydvgggesFGTLS 280
Cdd:cd09941   4 PWFHGKISRAEAEEILMNQRPDGAFLIRESESSPGDFSLSVKFGNDVQHFKVLrdgagkyflWVVK---------FNSLN 74

                        90
                ....*....|
gi 23344946 281 ELIDHYKRNP 290
Cdd:cd09941  75 ELVDYHRTTS 84
R-PTPc-U-2 cd14637
PTP domain of receptor-type tyrosine-protein phosphatase U, repeat 2; Receptor-type ...
 558-739 1.51e-16

PTP domain of receptor-type tyrosine-protein phosphatase U, repeat 2; Receptor-type tyrosine-protein phosphatase U (PTPRU), also known as pancreatic carcinoma phosphatase 2 (PCP-2), belongs to the type IIb subfamily of receptor protein tyrosine phosphatases (RPTPs), which belong to the larger family of classical tyrosine-specific protein tyrosine phosphatases (PTPs). PTPs (EC 3.1.3.48) catalyze the dephosphorylation of phosphotyrosine peptides. PTPRU/PCP-2 is the most distant member of the type IIb subfamily and may have a distinct biological function other than cell-cell aggregation. It localizes to the adherens junctions and directly binds and dephosphorylates beta-catenin, and regulates the balance between signaling and adhesive beta-catenin. It plays an important role in the maintenance of epithelial integrity. PTPRU contains an extracellular region with an Meprin-A5 (neuropilin)-mu (MAM) domain, an immunoglobulin (Ig) domain, and four fibronectin type III (FN3) repeats, a transmembrane domain, and an intracellular segment with a juxtamembrane domain similar to the cytoplasmic domain of classical cadherins and two tandem PTP domains. This model represents the second (repeat 2) PTP domain.


Pssm-ID: 350485 [Multi-domain]  Cd Length: 207  Bit Score: 79.18  E-value: 1.51e-16
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 558 NTVTDFWNMVWQENTRVIVMTTKEYERGKE-KCARYWPDEGRsEQFGHARIQCVSENSTSDYTLREFLVS--WRDQPARR 634
Cdd:cd14637  25 NTTTDFWRLVYDYGCTSVVMLNQLNQSNSAwPCLQYWPEPGL-QQYGPMEVEFVSGSADEDIVTRLFRVQniTRLQEGHL 103

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 635 IF-HYHFQVW-PDHGVPADPGCVLNFLQDVNTRQshlAQAGEkpGPICVHCSAGIGRTGTFIVIDMILDQIVRNGLdteI 712
Cdd:cd14637 104 MVrHFQFLRWsAYRDTPDSKKAFLHLLASVEKWQ---RESGE--GRTVVHCLNGGGRSGTYCASAMILEMIRCHNI---V 175

                       170       180
                ....*....|....*....|....*..
gi 23344946 713 DIQRTIQMVRSQRSGLVQTEAQYKFVY 739
Cdd:cd14637 176 DVFYAVKTLRNYKPNMVETLEQYRFCY 202
SH2_Nterm_shark_like cd10347
N-terminal Src homology 2 (SH2) domain found in SH2 domains, ANK, and kinase domain (shark) ...
 211-286 1.88e-16

N-terminal Src homology 2 (SH2) domain found in SH2 domains, ANK, and kinase domain (shark) proteins; These non-receptor protein-tyrosine kinases contain two SH2 domains, five ankyrin (ANK)-like repeats, and a potential tyrosine phosphorylation site in the carboxyl-terminal tail which resembles the phosphorylation site in members of the src family. Like, mammalian non-receptor protein-tyrosine kinases, ZAP-70 and syk proteins, they do not have SH3 domains. However, the presence of ANK makes these unique among protein-tyrosine kinases. Both tyrosine kinases and ANK repeats have been shown to transduce developmental signals, and SH2 domains are known to participate intimately in tyrosine kinase signaling. These tyrosine kinases are believed to be involved in epithelial cell polarity. The members of this family include the shark (SH2 domains, ANK, and kinase domain) gene in Drosophila and yellow fever mosquitos, as well as the hydra protein HTK16. Drosophila Shark is proposed to transduce intracellularly the Crumbs, a protein necessary for proper organization of ectodermal epithelia, intercellular signal. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.


Pssm-ID: 198210  Cd Length: 81  Bit Score: 75.11  E-value: 1.88e-16
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 23344946 211 WFHGNLSGKEAEKLIL-ERGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRWQ--DKKYDVGGGESFGTLSELIDHY 286
Cdd:cd10347   3 WYHGKISREVAEALLLrEGGRDGLFLVRESTSAPGDYVLSLLAQGEVLHYQIRRHgeDAFFSDDGPLIFHGLDTLIEHY 81
SH2_Cterm_RasGAP cd10354
C-terminal Src homology 2 (SH2) domain found in Ras GTPase-activating protein 1 (GAP); RasGAP ...
 211-286 2.00e-16

C-terminal Src homology 2 (SH2) domain found in Ras GTPase-activating protein 1 (GAP); RasGAP is part of the GAP1 family of GTPase-activating proteins. The protein is located in the cytoplasm and stimulates the GTPase activity of normal RAS p21, but not its oncogenic counterpart. Acting as a suppressor of RAS function, the protein enhances the weak intrinsic GTPase activity of RAS proteins resulting in RAS inactivation, thereby allowing control of cellular proliferation and differentiation. Mutations leading to changes in the binding sites of either protein are associated with basal cell carcinomas. Alternative splicing results in two isoforms. The shorter isoform which lacks the N-terminal hydrophobic region, has the same activity, and is expressed in placental tissues. In general longer isoform contains 2 SH2 domains, a SH3 domain, a pleckstrin homology (PH) domain, and a calcium-dependent phospholipid-binding C2 domain. The C-terminus contains the catalytic domain of RasGap which catalyzes the activation of Ras by hydrolyzing GTP-bound active Ras into an inactive GDP-bound form of Ras. This model contains the C-terminal SH2 domain. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.


Pssm-ID: 198217  Cd Length: 77  Bit Score: 74.77  E-value: 2.00e-16
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 23344946 211 WFHGNLSGKEAEKLILERGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRWQDKKYDVGGGESFGTLSELIDHY 286
Cdd:cd10354   2 WFHGKISREEAYNMLVKVGGPGSFLVRESDNTPGDYSLSFRVNEGIKHFKIIPTGNNQFMMGGRYFSSLDDVIDRY 77
SH2_SHC cd09925
Src homology 2 (SH2) domain found in SH2 adaptor protein C (SHC); SHC is involved in a wide ...
 205-304 4.29e-16

Src homology 2 (SH2) domain found in SH2 adaptor protein C (SHC); SHC is involved in a wide variety of pathways including regulating proliferation, angiogenesis, invasion and metastasis, and bone metabolism. An adapter protein, SHC has been implicated in Ras activation following the stimulation of a number of different receptors, including growth factors [insulin, epidermal growth factor (EGF), nerve growth factor, and platelet derived growth factor (PDGF)], cytokines [interleukins 2, 3, and 5], erythropoietin, and granulocyte/macrophage colony-stimulating factor, and antigens [T-cell and B-cell receptors]. SHC has been shown to bind to tyrosine-phosphorylated receptors, and receptor stimulation leads to tyrosine phosphorylation of SHC. Upon phosphorylation, SHC interacts with another adapter protein, Grb2, which binds to the Ras GTP/GDP exchange factor mSOS which leads to Ras activation. SHC is composed of an N-terminal domain that interacts with proteins containing phosphorylated tyrosines, a (glycine/proline)-rich collagen-homology domain that contains the phosphorylated binding site, and a C-terminal SH2 domain. SH2 has been shown to interact with the tyrosine-phosphorylated receptors of EGF and PDGF and with the tyrosine-phosphorylated C chain of the T-cell receptor, providing one of the mechanisms of T-cell-mediated Ras activation. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.


Pssm-ID: 198179  Cd Length: 104  Bit Score: 74.69  E-value: 4.29e-16
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 205 QLHGYTWFHGNLSGKEAEKLIlerGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVM-------IRWQDKkydvgggeSFG 277
Cdd:cd09925   3 QLRGEPWYHGKMSRRDAESLL---QTDGDFLVRESTTTPGQYVLTGMQNGQPKHLLlvdpegvVRTKDR--------VFE 71

                        90       100
                ....*....|....*....|....*...
gi 23344946 278 TLSELIDHYKRNPM-VETCGTVVHLRQP 304
Cdd:cd09925  72 SISHLINYHVTNGLpIISEGSELHLRRP 99
SH2_Nck2 cd10409
Src homology 2 (SH2) domain found in Nck; Nck proteins are adaptors that modulate actin ...
 211-291 4.94e-16

Src homology 2 (SH2) domain found in Nck; Nck proteins are adaptors that modulate actin cytoskeleton dynamics by linking proline-rich effector molecules to tyrosine kinases or phosphorylated signaling intermediates. There are two members known in this family: Nck1 (Nckalpha) and Nck2 (Nckbeta and Growth factor receptor-bound protein 4 (Grb4)). They are characterized by having 3 SH3 domains and a C-terminal SH2 domain. Nck1 and Nck2 have overlapping functions as determined by gene knockouts. Both bind receptor tyrosine kinases and other tyrosine-phosphorylated proteins through their SH2 domains. In addition they also bind distinct targets. Neuronal signaling proteins: EphrinB1, EphrinB2, and Disabled-1 (Dab-1) all bind to Nck-2 exclusively. And in the case of PDGFR, Tyr(P)751 binds to Nck1 while Tyr(P)1009 binds to Nck2. Nck1 and Nck2 have a role in the infection process of enteropathogenic Escherichia coli (EPEC). Their SH3 domains are involved in recruiting and activating the N-WASP/Arp2/3 complex inducing actin polymerization resulting in the production of pedestals, dynamic bacteria-presenting protrusions of the plasma membrane. A similar thing occurs in the vaccinia virus where motile plasma membrane projections are formed beneath the virus. Recently it has been shown that the SH2 domains of both Nck1 and Nck2 bind the G-protein coupled receptor kinase-interacting protein 1 (GIT1) in a phosphorylation-dependent manner. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.


Pssm-ID: 198272  Cd Length: 98  Bit Score: 74.30  E-value: 4.94e-16
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 211 WFHGNLSGKEAEKLILERGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRWQDKKYDVgGGESFGTLSELIDHYKRNP 290
Cdd:cd10409   3 WYYGNVTRHQAECALNERGVEGDFLIRDSESSPSDFSVSLKAVGKNKHFKVQLVDNVYCI-GQRRFNSMDELVEHYKKAP 81


                .
gi 23344946 291 M 291
Cdd:cd10409  82 I 82
PHA02740 PHA02740
protein tyrosine phosphatase; Provisional
 551-747 5.62e-16

protein tyrosine phosphatase; Provisional


Pssm-ID: 165107 [Multi-domain]  Cd Length: 298  Bit Score: 79.63  E-value: 5.62e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946  551 CLLTQQVNTVTDFWNMVWQENTRVIVMTTKEYErgKEKCARYWP-DEGRSEQFGHARIQCVSENSTSDYTLRefLVSWRD 629
Cdd:PHA02740  95 CIINLCEDACDKFLQALSDNKVQIIVLISRHAD--KKCFNQFWSlKEGCVITSDKFQIETLEIIIKPHFNLT--LLSLTD 170

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946  630 Q--PARRIFHYHFQVWPDHGVPADPGCVLNFLQDVNTRQSHLAQ--AGEKPGPICVHCSAGIGRTGTFIVIDMILDQIVR 705
Cdd:PHA02740 171 KfgQAQKISHFQYTAWPADGFSHDPDAFIDFFCNIDDLCADLEKhkADGKIAPIIIDCIDGISSSAVFCVFDICATEFDK 250

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
gi 23344946  706 NGLdteIDIQRTIQMVRSQRSGLVQTEAQYKFVYYAVQHYIQ 747
Cdd:PHA02740 251 TGM---LSIANALKKVRQKKYGCMNCLDDYVFCYHLIAAYLK 289
SH2_Nck1 cd10408
Src homology 2 (SH2) domain found in Nck; Nck proteins are adaptors that modulate actin ...
 211-291 1.11e-15

Src homology 2 (SH2) domain found in Nck; Nck proteins are adaptors that modulate actin cytoskeleton dynamics by linking proline-rich effector molecules to tyrosine kinases or phosphorylated signaling intermediates. There are two members known in this family: Nck1 (Nckalpha) and Nck2 (Nckbeta and Growth factor receptor-bound protein 4 (Grb4)). They are characterized by having 3 SH3 domains and a C-terminal SH2 domain. Nck1 and Nck2 have overlapping functions as determined by gene knockouts. Both bind receptor tyrosine kinases and other tyrosine-phosphorylated proteins through their SH2 domains. In addition they also bind distinct targets. Neuronal signaling proteins: EphrinB1, EphrinB2, and Disabled-1 (Dab-1) all bind to Nck-2 exclusively. And in the case of PDGFR, Tyr(P)751 binds to Nck1 while Tyr(P)1009 binds to Nck2. Nck1 and Nck2 have a role in the infection process of enteropathogenic Escherichia coli (EPEC). Their SH3 domains are involved in recruiting and activating the N-WASP/Arp2/3 complex inducing actin polymerization resulting in the production of pedestals, dynamic bacteria-presenting protrusions of the plasma membrane. A similar thing occurs in the vaccinia virus where motile plasma membrane projections are formed beneath the virus. Recently it has been shown that the SH2 domains of both Nck1 and Nck2 bind the G-protein coupled receptor kinase-interacting protein 1 (GIT1) in a phosphorylation-dependent manner. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.


Pssm-ID: 198271  Cd Length: 97  Bit Score: 73.53  E-value: 1.11e-15
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 211 WFHGNLSGKEAEKLILERGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRWQDKKYDVgGGESFGTLSELIDHYKRNP 290
Cdd:cd10408   3 WYYGKVTRHQAEMALNERGNEGDFLIRDSESSPNDFSVSLKAQGKNKHFKVQLKECVYCI-GQRKFSSMEELVEHYKKAP 81


                .
gi 23344946 291 M 291
Cdd:cd10408  82 I 82
SH2_C-SH2_PLC_gamma_like cd09932
C-terminal Src homology 2 (C-SH2) domain in Phospholipase C gamma; Phospholipase C gamma is a ...
 211-306 6.03e-15

C-terminal Src homology 2 (C-SH2) domain in Phospholipase C gamma; Phospholipase C gamma is a signaling molecule that is recruited to the C-terminal tail of the receptor upon autophosphorylation of a highly conserved tyrosine. PLCgamma is composed of a Pleckstrin homology (PH) domain followed by an elongation factor (EF) domain, 2 catalytic regions of PLC domains that flank 2 tandem SH2 domains (N-SH2, C-SH2), and ending with a SH3 domain and C2 domain. N-SH2 SH2 domain-mediated interactions represent a crucial step in transmembrane signaling by receptor tyrosine kinases. SH2 domains recognize phosphotyrosine (pY) in the context of particular sequence motifs in receptor phosphorylation sites. Both N-SH2 and C-SH2 have a very similar binding affinity to pY. But in growth factor stimulated cells these domains bind to different target proteins. N-SH2 binds to pY containing sites in the C-terminal tails of tyrosine kinases and other receptors. Recently it has been shown that this interaction is mediated by phosphorylation-independent interactions between a secondary binding site found exclusively on the N-SH2 domain and a region of the FGFR1 tyrosine kinase domain. This secondary site on the SH2 cooperates with the canonical pY site to regulate selectivity in mediating a specific cellular process. C-SH2 binds to an intramolecular site on PLCgamma itself which allows it to hydrolyze phosphatidylinositol-4,5-bisphosphate into diacylglycerol and inositol triphosphate. These then activate protein kinase C and release calcium. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.


Pssm-ID: 198186  Cd Length: 104  Bit Score: 71.53  E-value: 6.03e-15
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 211 WFHGNLSGKEAEKLILERGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRwQDKKYDVGGGESFGTLSELIDHYKRNP 290
Cdd:cd09932   6 WFHANLTREQAEEMLMRVPRDGAFLVRPSETDPNSFAISFRAEGKIKHCRIK-QEGRLFVIGTSQFESLVELVSYYEKHP 84

                        90
                ....*....|....*.
gi 23344946 291 MVETcgtvVHLRQPFN 306
Cdd:cd09932  85 LYRK----IKLRYPVN 96
R-PTP-Z-2 cd17669
catalytic domain of receptor-type tyrosine-protein phosphatase Z, repeat 2; Receptor-type ...
 545-742 2.19e-14

catalytic domain of receptor-type tyrosine-protein phosphatase Z, repeat 2; Receptor-type tyrosine-protein phosphatase Z (PTPRZ), also called receptor-type tyrosine-protein phosphatase zeta (R-PTP-zeta), belongs to the family of classical tyrosine-specific protein tyrosine phosphatases (PTPs). PTPs (EC 3.1.3.48) catalyze the dephosphorylation of phosphotyrosine peptides. Three isoforms are generated by alternative splicing from a single PTPRZ gene: two transmembrane isoforms, PTPRZ-A and PTPRZ-B, and one secretory isoform, PTPRZ-S (also known as phosphacan); all are preferentially expressed in the central nervous system (CNS) as chondroitin sulfate (CS) proteoglycans. PTPRZ isoforms play important roles in maintaining oligodendrocyte precursor cells in an undifferentiated state. PTPRZ is a type 1 integral membrane protein consisting of an extracellular region with a carbonic anhydrase-like (CAH) and a fibronectin type III (FN3) domains, and an intracellular region with a catalytic PTP domain (repeat 1) proximal to the membrane, and a catalytically inactive PTP-fold domain (repeat 2) distal to the membrane. This model represents the inactive PTP-like domain (repeat 2).


Pssm-ID: 350507 [Multi-domain]  Cd Length: 204  Bit Score: 73.10  E-value: 2.19e-14
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 545 YIATQGCLLtqqvNTVTDFWNMVWQENTRVIVMTTKEYERGKEKCArYWPDEGRS---EQFGHARI--QCVSENSTSDYT 619
Cdd:cd17669  16 FIITQHPLL----HTIKDFWRMIWDHNAQLIVMLPDGQNMAEDEFV-YWPNKDEPincETFKVTLIaeEHKCLSNEEKLI 90

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 620 LREFLV-SWRDQPARRIFHYHFQVWPDHGVPADPGC-VLNFLQDvntrqshlaQAGEKPGPICVHCSAGIGRTGTFIVID 697
Cdd:cd17669  91 IQDFILeATQDDYVLEVRHFQCPKWPNPDSPISKTFeLISIIKE---------EAANRDGPMIVHDEHGGVTAGTFCALT 161

                       170       180       190       200
                ....*....|....*....|....*....|....*....|....*
gi 23344946 698 MILDQIVRnglDTEIDIQRTIQMVRSQRSGLVQTEAQYKFVYYAV 742
Cdd:cd17669 162 TLMHQLEK---ENSVDVYQVAKMINLMRPGVFTDIEQYQFLYKAI 203
R-PTPc-M-2 cd14635
PTP domain of receptor-type tyrosine-protein phosphatase M, repeat 2; Receptor-type ...
 541-739 5.11e-13

PTP domain of receptor-type tyrosine-protein phosphatase M, repeat 2; Receptor-type tyrosine-protein phosphatase M (PTPRM), also known as protein-tyrosine phosphatase mu (R-PTP-mu or PTPmu), belongs to the type IIb subfamily of receptor protein tyrosine phosphatases (RPTPs), which belong to the larger family of classical tyrosine-specific protein tyrosine phosphatases (PTPs). PTPs (EC 3.1.3.48) catalyze the dephosphorylation of phosphotyrosine peptides. PTPRM/PTPmu is a homophilic cell adhesion molecule expressed in CNS neurons and glia. It is required for E-, N-, and R-cadherin-dependent neurite outgrowth. Loss of PTPmu contributes to tumor cell migration and dispersal of human glioblastomas. PTPRM contains an extracellular region with an Meprin-A5 (neuropilin)-mu (MAM) domain, an immunoglobulin (Ig) domain, and four fibronectin type III (FN3) repeats, a transmembrane domain, and an intracellular segment with a juxtamembrane domain similar to the cytoplasmic domain of classical cadherins and two tandem PTP domains. This model represents the second (repeat 2) PTP domain.


Pssm-ID: 350483 [Multi-domain]  Cd Length: 206  Bit Score: 68.95  E-value: 5.11e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 541 MFKTYIATQGCLLTQQV--NTVTDFWNMVWQENTRVIVMTTKEyeRGKEKCARYWPDEGrSEQFGHARIQCVSENSTSDY 618
Cdd:cd14635   6 LMDSYKQPSAFIVTQHPlpNTVKDFWRLVLDYHCTSIVMLNDV--DPAQLCPQYWPENG-VHRHGPIQVEFVSADLEEDI 82

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 619 TLREFLVSWRDQPA---RRIFHYHFQVWPDH-GVPADPGCVLNFLQDVNTRQSHLaQAGEkpGPICVHCSAGIGRTGTFI 694
Cdd:cd14635  83 ISRIFRIYNAARPQdgyRMVQQFQFLGWPMYrDTPVSKRSFLKLIRQVDKWQEEY-NGGE--GRTVVHCLNGGGRSGTFC 159

                       170       180       190       200
                ....*....|....*....|....*....|....*....|....*
gi 23344946 695 VIDMILDQIVRNgldTEIDIQRTIQMVRSQRSGLVQTEAQYKFVY 739
Cdd:cd14635 160 AISIVCEMLRHQ---RAVDVFHAVKTLRNNKPNMVDLLDQYKFCY 201
SH2_Grb7_family cd09944
Src homology 2 (SH2) domain found in the growth factor receptor bound, subclass 7 (Grb7) ...
 211-289 5.84e-13

Src homology 2 (SH2) domain found in the growth factor receptor bound, subclass 7 (Grb7) proteins; The Grb family binds to the epidermal growth factor receptor (EGFR, erbB1) via their SH2 domains. There are 3 members of the Grb7 family of proteins: Grb7, Grb10, and Grb14. They are composed of an N-terminal Proline-rich domain, a Ras Associating-like (RA) domain, a Pleckstrin Homology (PH) domain, a phosphotyrosine interaction region (PIR, BPS) and a C-terminal SH2 domain. The SH2 domains of Grb7, Grb10 and Grb14 preferentially bind to a different RTK. Grb7 binds strongly to the erbB2 receptor, unlike Grb10 and Grb14 which bind weakly to it. Grb14 binds to Fibroblast Growth Factor Receptor (FGFR). Grb10 has been shown to interact with many different proteins, including the insulin and IGF1 receptors, platelet-derived growth factor (PDGF) receptor-beta, Ret, Kit, Raf1 and MEK1, and Nedd4. Grb7 family proteins are phosphorylated on serine/threonine as well as tyrosine residues. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.


Pssm-ID: 198197 [Multi-domain]  Cd Length: 108  Bit Score: 65.91  E-value: 5.84e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 211 WFHGNLSGKEAEKLILERG-KNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRWQDKKYDV-----GGGESFGTLSELID 284
Cdd:cd09944   7 WFHGGISRDEAARLIRQQGlVDGVFLVRESQSNPGAFVLSLKHGQKIKHYQIIPIEDEGQWyftldDGVTKFYDLLQLVE 86


                ....*
gi 23344946 285 HYKRN 289
Cdd:cd09944  87 FYQLN 91
SH2_BLNK_SLP-76 cd09929
Src homology 2 (SH2) domain found in B-cell linker (BLNK) protein and SH2 domain-containing ...
 200-292 6.31e-13

Src homology 2 (SH2) domain found in B-cell linker (BLNK) protein and SH2 domain-containing leukocyte protein of 76 kDa (SLP-76); BLNK (also known as SLP-65 or BASH) is an important adaptor protein expressed in B-lineage cells. BLNK consists of a N-terminal sterile alpha motif (SAM) domain and a C-terminal SH2 domain. BLNK is a cytoplasmic protein, but a part of it is bound to the plasma membrane through an N-terminal leucine zipper motif and transiently bound to a cytoplasmic domain of Iga through its C-terminal SH2 domain upon B cell antigen receptor (BCR)-stimulation. A non-ITAM phosphotyrosine in Iga is necessary for the binding with the BLNK SH2 domain and/or for normal BLNK function in signaling and B cell activation. Upon phosphorylation BLNK binds Btk and PLCgamma2 through their SH2 domains and mediates PLCgamma2 activation by Btk. BLNK also binds other signaling molecules such as Vav, Grb2, Syk, and HPK1. BLNK has been shown to be necessary for BCR-mediated Ca2+ mobilization, for the activation of mitogen-activated protein kinases such as ERK, JNK, and p38 in a chicken B cell line DT40, and for activation of transcription factors such as NF-AT and NF-kappaB in human or mouse B cells. BLNK is involved in B cell development, B cell survival, activation, proliferation, and T-independent immune responses. BLNK is structurally homologous to SLP-76. SLP-76 and (linker for activation of T cells) LAT are adaptor/linker proteins in T cell antigen receptor activation and T cell development. BLNK interacts with many downstream signaling proteins that interact directly with both SLP-76 and LAT. New data suggest functional complementation of SLP-76 and LAT in T cell antigen receptor function with BLNK in BCR function. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.


Pssm-ID: 198183  Cd Length: 121  Bit Score: 66.18  E-value: 6.31e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 200 ATMRVQLHGYTWFHGNLSGKEAEKLILERGKNGSFLVRESQSKPGD--FVLSVRTDDKVTHVMIRWQD--KKYDVG---- 271
Cdd:cd09929   2 AEEEADLLPKEWYAGNIDRKEAEEALRRSNKDGTFLVRDSSGKDSSqpYTLMVLYNDKVYNIQIRFLEntRQYALGtglr 81

                        90       100
                ....*....|....*....|.
gi 23344946 272 GGESFGTLSELIDHYKRNPMV 292
Cdd:cd09929  82 GEETFSSVAEIIEHHQKTPLL 102
SH2_Src_Lck cd10362
Src homology 2 (SH2) domain in lymphocyte cell kinase (Lck); Lck is a member of the Src ...
 210-288 8.66e-13

Src homology 2 (SH2) domain in lymphocyte cell kinase (Lck); Lck is a member of the Src non-receptor type tyrosine kinase family of proteins. It is expressed in the brain, T-cells, and NK cells. The unique domain of Lck mediates its interaction with two T-cell surface molecules, CD4 and CD8. It associates with their cytoplasmic tails on CD4 T helper cells and CD8 cytotoxic T cells to assist signaling from the T cell receptor (TCR) complex. When the T cell receptor is engaged by the specific antigen presented by MHC, Lck phosphorylase the intracellular chains of the CD3 and zeta-chains of the TCR complex, allowing ZAP-70 to bind them. Lck then phosphorylates and activates ZAP-70, which in turn phosphorylates Linker of Activated T cells (LAT), a transmembrane protein that serves as a docking site for proteins including: Shc-Grb2-SOS, PI3K, and phospholipase C (PLC). The tyrosine phosphorylation cascade culminates in the intracellular mobilization of a calcium ions and activation of important signaling cascades within the lymphocyte, including the Ras-MEK-ERK pathway, which goes on to activate certain transcription factors such as NFAT, NF-kappaB, and AP-1. These transcription factors regulate the production cytokines such as Interleukin-2 that promote long-term proliferation and differentiation of the activated lymphocytes. The N-terminal tail of Lck is myristoylated and palmitoylated and it tethers the protein to the plasma membrane of the cell. Lck also contains a SH3 domain, a SH2 domain, and a C-terminal tyrosine kinase domain. Lck has 2 phosphorylation sites, the first an autophosphorylation site that is linked to activation of the protein and the second which is phosphorylated by Csk, which inhibits it. Lck is also inhibited by SHP-1 dephosphorylation and by Cbl ubiquitin ligase, which is part of the ubiquitin-mediated pathway. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.


Pssm-ID: 198225  Cd Length: 101  Bit Score: 65.28  E-value: 8.66e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 210 TWFHGNLSGKEAEKLILERGK-NGSFLVRESQSKPGDFVLSVR-----TDDKVTHVMIRWQDK-KYDVGGGESFGTLSEL 282
Cdd:cd10362   4 PWFFKNLSRNDAERQLLAPGNtHGSFLIRESETTAGSFSLSVRdfdqnQGEVVKHYKIRNLDNgGFYISPRITFPGLHEL 83


                ....*.
gi 23344946 283 IDHYKR 288
Cdd:cd10362  84 VRHYTN 89
SH2_SH2B_family cd10346
Src homology 2 (SH2) domain found in SH2B adapter protein family; The SH2B adapter protein ...
 206-296 1.73e-12

Src homology 2 (SH2) domain found in SH2B adapter protein family; The SH2B adapter protein family has 3 members: SH2B1 (SH2-B, PSM), SH2B2 (APS), and SH2B3 (Lnk). SH2B family members contain a pleckstrin homology domain, at least one dimerization domain, and a C-terminal SH2 domain which binds to phosphorylated tyrosines in a variety of tyrosine kinases. SH2B1 and SH2B2 function in signaling pathways found downstream of growth hormone receptor and receptor tyrosine kinases, including the insulin, insulin-like growth factor-I (IGF-I), platelet-derived growth factor (PDGF), nerve growth factor, hepatocyte growth factor, and fibroblast growth factor receptors. SH2B2beta, a new isoform of SH2B2, is an endogenous inhibitor of SH2B1 and/or SH2B2 (SH2B2alpha), negatively regulating insulin signaling and/or JAK2-mediated cellular responses. SH2B3 negatively regulates lymphopoiesis and early hematopoiesis. The lnk-deficiency results in enhanced production of B cells, and expansion as well as enhanced function of hematopoietic stem cells (HSCs), demonstrating negative regulatory functions of Sh2b3/Lnk in cytokine signaling. Sh2b3/Lnk also functions in responses controlled by cell adhesion and in crosstalk between integrin- and cytokine-mediated signaling. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.


Pssm-ID: 198209  Cd Length: 97  Bit Score: 64.36  E-value: 1.73e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 206 LHGYTWFHGNLSGKEAEKLILERGKN--GSFLVRESQSKPGDFVLSVRTDDKVTHVMIRWQDKkydvggGES------FG 277
Cdd:cd10346   5 LSEYPWFHGTLSRSDAAQLVLHSGADghGVFLVRQSETRRGEFVLTFNFQGRAKHLRLTLNEK------GQCrvqhlwFP 78

                        90
                ....*....|....*....
gi 23344946 278 TLSELIDHYKRNPMVETCG 296
Cdd:cd10346  79 SIFDMLEHFRQNPIPLESG 97
SH2_N-SH2_Zap70_Syk_like cd09938
N-terminal Src homology 2 (SH2) domain found in Zeta-chain-associated protein kinase 70 ...
 211-306 1.95e-12

N-terminal Src homology 2 (SH2) domain found in Zeta-chain-associated protein kinase 70 (ZAP-70) and Spleen tyrosine kinase (Syk) proteins; ZAP-70 and Syk comprise a family of hematopoietic cell specific protein tyrosine kinases (PTKs) that are required for antigen and antibody receptor function. ZAP-70 is expressed in T and natural killer (NK) cells and Syk is expressed in B cells, mast cells, polymorphonuclear leukocytes, platelets, macrophages, and immature T cells. They are required for the proper development of T and B cells, immune receptors, and activating NK cells. They consist of two N-terminal Src homology 2 (SH2) domains and a C-terminal kinase domain separated from the SH2 domains by a linker or hinge region. Phosphorylation of both tyrosine residues within the Immunoreceptor Tyrosine-based Activation Motifs (ITAM; consensus sequence Yxx[LI]x(7,8)Yxx[LI]) by the Src-family PTKs is required for efficient interaction of ZAP-70 and Syk with the receptor subunits and for receptor function. ZAP-70 forms two phosphotyrosine binding pockets, one of which is shared by both SH2 domains. In Syk the two SH2 domains do not form such a phosphotyrosine-binding site. The SH2 domains here are believed to function independently. In addition, the two SH2 domains of Syk display flexibility in their relative orientation, allowing Syk to accommodate a greater variety of spacing sequences between the ITAM phosphotyrosines and singly phosphorylated non-classical ITAM ligands. This model contains the N-terminus SH2 domains of both Syk and Zap70. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.


Pssm-ID: 198191  Cd Length: 104  Bit Score: 64.34  E-value: 1.95e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 211 WFHGNLSGKEAEKLILERGKN-GSFLVRESQSKPGDFVLSVRTDDKVTHVMI-RWQDKKYDVGGGESFGTLSELIDHYKR 288
Cdd:cd09938   3 FFYGSITREEAEEYLKLAGMSdGLFLLRQSLRSLGGYVLSVCHGRKFHHYTIeRQLNGTYAIAGGKAHCGPAELCEYHST 82

                        90
                ....*....|....*...
gi 23344946 289 NPMvetcGTVVHLRQPFN 306
Cdd:cd09938  83 DLD----GLVCLLRKPCN 96
SH2_SHIP cd10343
Src homology 2 (SH2) domain found in SH2-containing inositol-5'-phosphatase (SHIP) and ...
 208-304 2.79e-12

Src homology 2 (SH2) domain found in SH2-containing inositol-5'-phosphatase (SHIP) and SLAM-associated protein (SAP); The SH2-containing inositol-5'-phosphatase, SHIP (also called SHIP1/SHIP1a), is a hematopoietic-restricted phosphatidylinositide phosphatase that translocates to the plasma membrane after extracellular stimulation and hydrolyzes the phosphatidylinositol-3-kinase (PI3K)-generated second messenger PI-3,4,5-P3 (PIP3) to PI-3,4-P2. As a result, SHIP dampens down PIP3 mediated signaling and represses the proliferation, differentiation, survival, activation, and migration of hematopoietic cells. PIP3 recruits lipid-binding pleckstrin homology(PH) domain-containing proteins to the inner wall of the plasma membrane and activates them. PH domain-containing downstream effectors include the survival/proliferation enhancing serine/threonine kinase, Akt (protein kinase B), the tyrosine kinase, Btk, the regulator of protein translation, S6K, and the Rac and cdc42 guanine nucleotide exchange factor, Vav. SHIP is believed to act as a tumor suppressor during leukemogenesis and lymphomagenesis, and may play a role in activating the immune system to combat cancer. SHIP contains an N-terminal SH2 domain, a centrally located phosphatase domain that specifically hydrolyzes the 5'-phosphate from PIP3, PI-4,5-P2 and inositol-1,3,4,5- tetrakisphosphate (IP4), a C2 domain, that is an allosteric activating site when bound by SHIP's enzymatic product, PI-3,4-P2; 2 NPXY motifs that bind proteins with a phosphotyrosine binding (Shc, Dok 1, Dok 2) or an SH2 (p85a, SHIP2) domain; and a proline-rich domain consisting of four PxxP motifs that bind a subset of SH3-containing proteins including Grb2, Src, Lyn, Hck, Abl, PLCg1, and PIAS1. The SH2 domain of SHIP binds to the tyrosine phosphorylated forms of Shc, SHP-2, Doks, Gabs, CD150, platelet-endothelial cell adhesion molecule, Cas, c-Cbl, immunoreceptor tyrosine-based inhibitory motifs (ITIMs), and immunoreceptor tyrosine-based activation motifs (ITAMs). The X-linked lymphoproliferative syndrome (XLP) gene encodes SAP (also called SH2D1A/DSHP) a protein that consists of a 5 residue N-terminus, a single SH2 domain, and a short 25 residue C-terminal tail. XLP is characterized by an extreme sensitivity to Epstein-Barr virus. Both T and natural killer (NK) cell dysfunctions have been seen in XLP patients. SAP binds the cytoplasmic tail of Signaling lymphocytic activation molecule (SLAM), 2B4, Ly-9, and CD84. SAP is believed to function as a signaling inhibitor, by blocking or regulating binding of other signaling proteins. SAP and the SAP-like protein EAT-2 recognize the sequence motif TIpYXX(V/I), which is found in the cytoplasmic domains of a restricted number of T, B, and NK cell surface receptors and are proposed to be natural inhibitors or regulators of the physiological role of a small family of receptors on the surface of these cells. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.


Pssm-ID: 198206  Cd Length: 103  Bit Score: 64.00  E-value: 2.79e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 208 GYTWFHGNLSGKEAEKLILERGKNGSFLVRESQSKPGDFVLSVRTDDKV-THVMIRWQDKKYDVGGGES-----FGTLSE 281
Cdd:cd10343   2 APPWYHGNITRSKAEELLSKAGKDGSFLVRDSESVSGAYALCVLYQNCVhTYRILPNAEDKLSVQASEGvpvrfFTTLPE 81

                        90       100
                ....*....|....*....|...
gi 23344946 282 LIDHYKRNPMvetcGTVVHLRQP 304
Cdd:cd10343  82 LIEFYQKENM----GLVTHLLYP 100
SH2_cSH2_p85_like cd09930
C-terminal Src homology 2 (cSH2) domain found in p85; Phosphoinositide 3-kinases (PI3Ks) are ...
 210-307 3.91e-12

C-terminal Src homology 2 (cSH2) domain found in p85; Phosphoinositide 3-kinases (PI3Ks) are essential for cell growth, migration, and survival. p110, the catalytic subunit, is composed of an adaptor-binding domain, a Ras-binding domain, a C2 domain, a helical domain, and a kinase domain. The regulatory unit is called p85 and is composed of an SH3 domain, a RhoGap domain, a N-terminal SH2 (nSH2) domain, a inter SH2 (iSH2) domain, and C-terminal (cSH2) domain. There are 2 inhibitory interactions between p110alpha and p85 of P13K: 1) p85 nSH2 domain with the C2, helical, and kinase domains of p110alpha and 2) p85 iSH2 domain with C2 domain of p110alpha. There are 3 inhibitory interactions between p110beta and p85 of P13K: 1) p85 nSH2 domain with the C2, helical, and kinase domains of p110beta, 2) p85 iSH2 domain with C2 domain of p110alpha, and 3) p85 cSH2 domain with the kinase domain of p110alpha. It is interesting to note that p110beta is oncogenic as a wild type protein while p110alpha lacks this ability. One explanation is the idea that the regulation of p110beta by p85 is unique because of the addition of inhibitory contacts from the cSH2 domain and the loss of contacts in the iSH2 domain. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.


Pssm-ID: 198184  Cd Length: 104  Bit Score: 63.59  E-value: 3.91e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 210 TWFHGNLSGKEAEKLIleRGK-NGSFLVRESqSKPGDFVLSVRTDDKVTHVMIRWQDKKYdvGGGESF---GTLSELIDH 285
Cdd:cd09930   7 TWLVGDINRTQAEELL--RGKpDGTFLIRES-STQGCYACSVVCNGEVKHCVIYKTETGY--GFAEPYnlyESLKELVLH 81

                        90       100
                ....*....|....*....|...
gi 23344946 286 YKRNPMVETCGTV-VHLRQPFNA 307
Cdd:cd09930  82 YAHNSLEQHNDSLtVTLAYPVLA 104
SH2_Src_Frk cd10369
Src homology 2 (SH2) domain found in the Fyn-related kinase (Frk); Frk is a member of the Src ...
 211-304 4.64e-12

Src homology 2 (SH2) domain found in the Fyn-related kinase (Frk); Frk is a member of the Src non-receptor type tyrosine kinase family of proteins. The Frk subfamily is composed of Frk/Rak and Iyk/Bsk/Gst. It is expressed primarily epithelial cells. Frk is a nuclear protein and may function during G1 and S phase of the cell cycle and suppress growth. Unlike the other Src members it lacks a glycine at position 2 of SH4 which is important for addition of a myristic acid moiety that is involved in targeting Src PTKs to cellular membranes. FRK and SHB exert similar effects when overexpressed in rat phaeochromocytoma (PC12) and beta-cells, where both induce PC12 cell differentiation and beta-cell proliferation. Under conditions that cause beta-cell degeneration these proteins augment beta-cell apoptosis. The FRK-SHB responses involve FAK and insulin receptor substrates (IRS) -1 and -2. Frk has been demonstrated to interact with retinoblastoma protein. Frk regulates PTEN protein stability by phosphorylating PTEN, which in turn prevents PTEN degradation. Frk also plays a role in regulation of embryonal pancreatic beta cell formation. Frk has a unique N-terminal domain, an SH3 domain, an SH2 domain, a kinase domain and a regulatory tail, as do the other members of the family. Like the other members of the Src family the SH2 domain in addition to binding the target, also plays an autoinhibitory role by binding to its activation loop. The tryosine involved is at the same site as the tyrosine involved in the autophosphorylation of Src. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.


Pssm-ID: 199831  Cd Length: 96  Bit Score: 62.97  E-value: 4.64e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 211 WFHGNLSGKEAEK-LILERGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMI-RWQDKKYDVGGGESFGTLSELIDHYKR 288
Cdd:cd10369   5 WFFGAIKRADAEKqLLYSENQTGAFLIRESESQKGEFSLSVLDGGVVKHYRIrRLDEGGFFLTRRKTFSTLNEFVNYYTT 84

                        90
                ....*....|....*.
gi 23344946 289 NpmveTCGTVVHLRQP 304
Cdd:cd10369  85 T----SDGLCVKLGKP 96
SH2_Cterm_shark_like cd10348
C-terminal Src homology 2 (SH2) domain found in SH2 domains, ANK, and kinase domain (shark) ...
 211-288 5.68e-12

C-terminal Src homology 2 (SH2) domain found in SH2 domains, ANK, and kinase domain (shark) proteins; These non-receptor protein-tyrosine kinases contain two SH2 domains, five ankyrin (ANK)-like repeats, and a potential tyrosine phosphorylation site in its carboxyl-terminal tail which resembles the phosphorylation site in members of the src family. Like, mammalian non-receptor protein-tyrosine kinases, ZAP-70 and syk proteins, they do not have SH3 domains. However, the presence of ANK makes these unique among protein-tyrosine kinases. Both tyrosine kinases and ANK repeats have been shown to transduce developmental signals, and SH2 domains are known to participate intimately in tyrosine kinase signaling. These tyrosine kinases are believed to be involved in epithelial cell polarity. The members of this family include the shark (SH2 domains, ANK, and kinase domain) gene in Drosophila and yellow fever mosquitos, as well as the hydra protein HTK16. Drosophila Shark is proposed to transduce intracellularly the Crumbs, a protein necessary for proper organization of ectodermal epithelia, intercellular signal. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.


Pssm-ID: 198211  Cd Length: 86  Bit Score: 62.44  E-value: 5.68e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 211 WFHGNLSGKEAEKLILERGK-NGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRWQDKK-YDVGGGESFGTLSELIDHYKR 288
Cdd:cd10348   2 WLHGALDRNEAVEILKQKADaDGSFLVRYSRRRPGGYVLTLVYENHVYHFEIQNRDDKwFYIDDGPYFESLEHLIEHYTQ 81
SH2_Tec_family cd09934
Src homology 2 (SH2) domain found in Tec-like proteins; The Tec protein tyrosine kinase is the ...
 206-304 6.80e-12

Src homology 2 (SH2) domain found in Tec-like proteins; The Tec protein tyrosine kinase is the founding member of a family that includes Btk, Itk, Bmx, and Txk. The members have a PH domain, a zinc-binding motif, a SH3 domain, a SH2 domain, and a protein kinase catalytic domain. Btk is involved in B-cell receptor signaling with mutations in Btk responsible for X-linked agammaglobulinemia (XLA) in humans and X-linked immunodeficiency (xid) in mice. Itk is involved in T-cell receptor signaling. Tec is expressed in both T and B cells, and is thought to function in activated and effector T lymphocytes to induce the expression of genes regulated by NFAT transcription factors. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.


Pssm-ID: 198188  Cd Length: 104  Bit Score: 62.80  E-value: 6.80e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 206 LHGYTWFHGNLSGKEAEKLILERGKNGSFLVRESqSKPGDFVLSVRT----DDKVTHVMIRWQDK-KYDVGGGESFGTLS 280
Cdd:cd09934   3 LEKYEWYVGDMSRQRAESLLKQEDKEGCFVVRNS-STKGLYTVSLFTkvpgSPHVKHYHIKQNARsEFYLAEKHCFETIP 81

                        90       100
                ....*....|....*....|....
gi 23344946 281 ELIDHYKRNPmvetCGTVVHLRQP 304
Cdd:cd09934  82 ELINYHQHNS----GGLATRLKYP 101
SH2_Src_HCK cd10363
Src homology 2 (SH2) domain found in HCK; HCK is a member of the Src non-receptor type ...
 211-288 2.95e-11

Src homology 2 (SH2) domain found in HCK; HCK is a member of the Src non-receptor type tyrosine kinase family of proteins and is expressed in hemopoietic cells. HCK is proposed to couple the Fc receptor to the activation of the respiratory burst. It may also play a role in neutrophil migration and in the degranulation of neutrophils. It has two different translational starts that have different subcellular localization. HCK has been shown to interact with BCR gene, ELMO1 Cbl gene, RAS p21 protein activator 1, RASA3, Granulocyte colony-stimulating factor receptor, ADAM15 and RAPGEF1. Like the other members of the Src family the SH2 domain in addition to binding the target, also plays an autoinhibitory role by binding to its C-terminal tail. In general SH2 domains are involved in signal transduction. HCK has a unique N-terminal domain, an SH3 domain, an SH2 domain, a kinase domain and a regulatory tail, as do the other members of the family. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.


Pssm-ID: 198226  Cd Length: 104  Bit Score: 61.13  E-value: 2.95e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 211 WFHGNLSGKEAEKLILERG-KNGSFLVRESQSKPGDFVLSVR-----TDDKVTHVMIRWQDK-KYDVGGGESFGTLSELI 283
Cdd:cd10363   5 WFFKGISRKDAERQLLAPGnMLGSFMIRDSETTKGSYSLSVRdydpqHGDTVKHYKIRTLDNgGFYISPRSTFSTLQELV 84


                ....*
gi 23344946 284 DHYKR 288
Cdd:cd10363  85 DHYKK 89
CDC14 COG2453
Protein-tyrosine phosphatase [Signal transduction mechanisms];
620-745 3.57e-11

Protein-tyrosine phosphatase [Signal transduction mechanisms];


Pssm-ID: 441989 [Multi-domain]  Cd Length: 140  Bit Score: 61.91  E-value: 3.57e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 620 LREFLVSWRDQPARRIFHYHFqVWPDHGVPADpgcvlnflQDVNTRQSHLAQAGEKPGPICVHCSAGIGRTGTFIVidMI 699
Cdd:COG2453  33 TEEEELLLGLLEEAGLEYLHL-PIPDFGAPDD--------EQLQEAVDFIDEALREGKKVLVHCRGGIGRTGTVAA--AY 101

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*.
gi 23344946 700 LdqiVRNGLDTEidiqRTIQMVRSQRSGLVQTEAQYKFVYYAVQHY 745
Cdd:COG2453 102 L---VLLGLSAE----EALARVRAARPGAVETPAQRAFLERFAKRL 140
SH2_Vav_family cd09940
Src homology 2 (SH2) domain found in the Vav family; Vav proteins are involved in several ...
 205-305 4.33e-11

Src homology 2 (SH2) domain found in the Vav family; Vav proteins are involved in several processes that require cytoskeletal reorganization, such as the formation of the immunological synapse (IS), phagocytosis, platelet aggregation, spreading, and transformation. Vavs function as guanine nucleotide exchange factors (GEFs) for the Rho/Rac family of GTPases. Vav family members have several conserved motifs/domains including: a leucine-rich region, a leucine-zipper, a calponin homology (CH) domain, an acidic domain, a Dbl-homology (DH) domain, a pleckstrin homology (PH) domain, a cysteine-rich domain, 2 SH3 domains, a proline-rich region, and a SH2 domain. Vavs are the only known Rho GEFs that have both the DH/PH motifs and SH2/SH3 domains in the same protein. The leucine-rich helix-loop-helix (HLH) domain is thought to be involved in protein heterodimerization with other HLH proteins and it may function as a negative regulator by forming inactive heterodimers. The CH domain is usually involved in the association with filamentous actin, but in Vav it controls NFAT stimulation, Ca2+ mobilization, and its transforming activity. Acidic domains are involved in protein-protein interactions and contain regulatory tyrosines. The DH domain is a GDP-GTP exchange factor on Rho/Rac GTPases. The PH domain in involved in interactions with GTP-binding proteins, lipids and/or phosphorylated serine/threonine residues. The SH3 domain is involved in localization of proteins to specific sites within the cell interacting with protein with proline-rich sequences. The SH2 domain mediates a high affinity interaction with tyrosine phosphorylated proteins. There are three Vav mammalian family members: Vav1 which is expressed in the hematopoietic system, Vav2 and Vav3 are more ubiquitously expressed. The members here include insect and amphibian Vavs. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.


Pssm-ID: 198193  Cd Length: 102  Bit Score: 60.38  E-value: 4.33e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 205 QLHGYTWFHGNLSGKEAEKLiLERGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMI-RWQDKKYDVGGGESFGTLSELI 283
Cdd:cd09940   1 DLSEFLWFVGEMERDTAENR-LENRPDGTYLVRVRPQGETQYALSIKYNGDVKHMKIeQRSDGLYYLSESRHFKSLVELV 79

                        90       100
                ....*....|....*....|....*...
gi 23344946 284 DHYKRNPMVE------TCgtvvhLRQPF 305
Cdd:cd09940  80 NYYERNSLGEnfagldTT-----LKWPY 102
SH2_SH2D2A_SH2D7 cd10349
Src homology 2 domain found in the SH2 domain containing protein 2A and 7 (SH2D2A and SH2D7); ...
 211-286 5.34e-11

Src homology 2 domain found in the SH2 domain containing protein 2A and 7 (SH2D2A and SH2D7); SH2D2A and SH7 both contain a single SH2 domain. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.


Pssm-ID: 199830  Cd Length: 77  Bit Score: 59.46  E-value: 5.34e-11
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 23344946 211 WFHGNLSGKEAEKLiLERGKNGSFLVRESQSKPGdFVLSVRTDDKVTHVMI-RWQDKKYDVGGGES-FGTLSELIDHY 286
Cdd:cd10349   2 WFHGFITRREAERL-LEPKPQGCYLVRFSESAVT-FVLSYRSRTCCRHFLLaQLRDGRHVVLGEDSaHARLQDLLLHY 77
SH2_Nterm_RasGAP cd10353
N-terminal Src homology 2 (SH2) domain found in Ras GTPase-activating protein 1 (GAP); RasGAP ...
 211-286 6.21e-11

N-terminal Src homology 2 (SH2) domain found in Ras GTPase-activating protein 1 (GAP); RasGAP is part of the GAP1 family of GTPase-activating proteins. The protein is located in the cytoplasm and stimulates the GTPase activity of normal RAS p21, but not its oncogenic counterpart. Acting as a suppressor of RAS function, the protein enhances the weak intrinsic GTPase activity of RAS proteins resulting in RAS inactivation, thereby allowing control of cellular proliferation and differentiation. Mutations leading to changes in the binding sites of either protein are associated with basal cell carcinomas. Alternative splicing results in two isoforms. The shorter isoform which lacks the N-terminal hydrophobic region, has the same activity, and is expressed in placental tissues. In general the longer isoform contains 2 SH2 domains, a SH3 domain, a pleckstrin homology (PH) domain, and a calcium-dependent phospholipid-binding C2 domain. The C-terminus contains the catalytic domain of RasGap which catalyzes the activation of Ras by hydrolyzing GTP-bound active Ras into an inactive GDP-bound form of Ras. This model contains the N-terminal SH2 domain. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.


Pssm-ID: 198216  Cd Length: 103  Bit Score: 59.85  E-value: 6.21e-11
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 23344946 211 WFHGNLSGKEAEKLILERGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRWQDKKYDVgGGESFGTLSELIDHY 286
Cdd:cd10353  21 WYHGRLDRTIAEERLRQAGKLGSYLIRESDRRPGSFVLSFLSRTGVNHFRIIAMCGDYYI-GGRRFSSLSDLIGYY 95
SH2_SHB_SHD_SHE_SHF_like cd09945
Src homology 2 domain found in SH2 domain-containing adapter proteins B, D, E, and F (SHB, SHD, ...
 211-291 8.94e-11

Src homology 2 domain found in SH2 domain-containing adapter proteins B, D, E, and F (SHB, SHD, SHE, SHF); SHB, SHD, SHE, and SHF are SH2 domain-containing proteins that play various roles throughout the cell. SHB functions in generating signaling compounds in response to tyrosine kinase activation. SHB contains proline-rich motifs, a phosphotyrosine binding (PTB) domain, tyrosine phosphorylation sites, and a SH2 domain. SHB mediates certain aspects of platelet-derived growth factor (PDGF) receptor-, fibroblast growth factor (FGF) receptor-, neural growth factor (NGF) receptor TRKA-, T cell receptor-, interleukin-2 (IL-2) receptor- and focal adhesion kinase- (FAK) signaling. SRC-like FYN-Related Kinase FRK/RAK (also named BSK/IYK or GTK) and SHB regulate apoptosis, proliferation and differentiation. SHB promotes apoptosis and is also required for proper mitogenicity, spreading and tubular morphogenesis in endothelial cells. SHB also plays a role in preventing early cavitation of embryoid bodies and reduces differentiation to cells expressing albumin, amylase, insulin and glucagon. SHB is a multifunctional protein that has difference responses in different cells under various conditions. SHE is expressed in heart, lung, brain, and skeletal muscle, while expression of SHD is restricted to the brain. SHF is mainly expressed in skeletal muscle, brain, liver, prostate, testis, ovary, small intestine, and colon. SHD may be a physiological substrate of c-Abl and may function as an adapter protein in the central nervous system. It is also thought to be involved in apoptotic regulation. SHD contains five YXXP motifs, a substrate sequence preferred by Abl tyrosine kinases, in addition to a poly-proline rich region and a C-terminal SH2 domain. SHE contains two pTry protein binding domains, protein interaction domain (PID) and a SH2 domain, followed by a glycine-proline rich region, all of which are N-terminal to the phosphotyrosine binding (PTB) domain. SHF contains four putative tyrosine phosphorylation sites and an SH2 domain. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.


Pssm-ID: 198198  Cd Length: 98  Bit Score: 59.36  E-value: 8.94e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 211 WFHGNLSGKEAEKLiLERGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMI-RWQDKKYDVG-GGESFGTLSELIDHYKR 288
Cdd:cd09945   3 WYHGAITRIEAESL-LRPCKEGSYLVRNSESTKQDYSLSLKSAKGFMHMRIqRNETGQYILGqFSRPFETIPEMIRHYCL 81


                ...
gi 23344946 289 NPM 291
Cdd:cd09945  82 NKL 84
SH2_SH2D7 cd10417
Src homology 2 domain found in the SH2 domain containing protein 7 (SH2D7); SH2D7 contains a ...
 211-312 1.20e-10

Src homology 2 domain found in the SH2 domain containing protein 7 (SH2D7); SH2D7 contains a single SH2 domain. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.


Pssm-ID: 199832  Cd Length: 102  Bit Score: 59.14  E-value: 1.20e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 211 WFHGNLSGKEAEKLILERGKnGSFLVRESQSKPGdFVLSVRTDDKVTHVMI-RWQDKKYDVGG-GESFGTLSELIDHYKR 288
Cdd:cd10417   9 WFHGFITRKQTEQLLRDKAL-GSFLIRLSDRATG-YILSYRGSDRCRHFVInQLRNRRYLISGdTSSHSTLAELVRHYQE 86

                        90       100
                ....*....|....*....|....
gi 23344946 289 NPMvetcgtvvhlrQPFNATRITA 312
Cdd:cd10417  87 VQL-----------EPFGETLTAA 99
SH2_BCAR3 cd10337
Src homology 2 (SH2) domain in the Breast Cancer Anti-estrogen Resistance protein 3; BCAR3 is ...
 206-289 2.46e-10

Src homology 2 (SH2) domain in the Breast Cancer Anti-estrogen Resistance protein 3; BCAR3 is part of a growing family of guanine nucleotide exchange factors is responsible for activation of Ras-family GTPases, including Sos1 and 2, GRF1 and 2, CalDAG-GEF/GRP1-4, C3G, cAMP-GEF/Epac 1 and 2, PDZ-GEFs, MR-GEF, RalGDS family members, RalGPS, RasGEF, Smg GDS, and phospholipase C(epsilon). 12102558 21262352 BCAR3 binds to the carboxy-terminus of BCAR1/p130Cas, a focal adhesion adapter protein. Over expression of BCAR1 (p130Cas) and BCAR3 induces estrogen independent growth in normally estrogen-dependent cell lines. They have been linked to resistance to anti-estrogens in breast cancer, Rac activation, and cell motility, though the BCAR3/p130Cas complex is not required for this activity in BCAR3. Many BCAR3-mediated signaling events in epithelial and mesenchymal cells are independent of p130Cas association. Structurally these proteins contain a single SH2 domain upstream of their RasGEF domain, which is responsible for the ability of BCAR3 to enhance p130Cas over-expression-induced migration. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.


Pssm-ID: 198200 [Multi-domain]  Cd Length: 136  Bit Score: 59.27  E-value: 2.46e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 206 LHGYTWFHGNLSGKEAEKLIlerGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMI-RWQDKKYDVG-------GGESFG 277
Cdd:cd10337   3 LRSHAWYHGRIPRQVAESLV---QREGDFLVRDSLSSPGDYVLTCRWKGQPLHFKInRVVLRPSEAYtrvqyqfEDEQFD 79

                        90
                ....*....|..
gi 23344946 278 TLSELIDHYKRN 289
Cdd:cd10337  80 SIPALVHFYVGN 91
SH2_Grb14 cd10414
Src homology 2 (SH2) domain found in the growth factor receptor bound, subclass 14 (Grb14) ...
 211-295 3.78e-10

Src homology 2 (SH2) domain found in the growth factor receptor bound, subclass 14 (Grb14) proteins; The Grb family binds to the epidermal growth factor receptor (EGFR, erbB1) via their SH2 domains. Grb14 is part of the Grb7 family of proteins which also includes Grb7, and Grb14. They are composed of an N-terminal Proline-rich domain, a Ras Associating-like (RA) domain, a Pleckstrin Homology (PH) domain, a phosphotyrosine interaction region (PIR, BPS) and a C-terminal SH2 domain. The SH2 domains of Grb7, Grb10 and Grb14 preferentially bind to a different RTK. Grb14 binds to Fibroblast Growth Factor Receptor (FGFR) and weakly to the erbB2 receptor. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.


Pssm-ID: 198277  Cd Length: 108  Bit Score: 58.02  E-value: 3.78e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 211 WFHGNLSGKEAEKLILERGK-NGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRWQDKKYDV-----GGGESFGTLSELID 284
Cdd:cd10414   7 WFHHKISRDEAQRLIIQQGLvDGVFLVRDSQSNPRTFVLSMSHGQKIKHFQIIPVEDDGELfhtldDGHTRFTDLIQLVE 86

                        90
                ....*....|.
gi 23344946 285 HYKRNPMVETC 295
Cdd:cd10414  87 FYQLNKGVLPC 97
SH2_SOCS7 cd10388
Src homology 2 (SH2) domain found in suppressor of cytokine signaling (SOCS) proteins; SH2 ...
 206-284 3.94e-10

Src homology 2 (SH2) domain found in suppressor of cytokine signaling (SOCS) proteins; SH2 domain found in SOCS proteins. SOCS was first recognized as a group of cytokine-inducible SH2 (CIS) domain proteins comprising eight family members in human (CIS and SOCS1-SOCS7). In addition to the SH2 domain, SOCS proteins have a variable N-terminal domain and a conserved SOCS box in the C-terminal domain. SOCS proteins bind to a substrate via their SH2 domain. The prototypical members, CIS and SOCS1-SOCS3, have been shown to regulate growth hormone signaling in vitro and in a classic negative feedback response compete for binding at phosphotyrosine sites in JAK kinase and receptor pathways to displace effector proteins and target bound receptors for proteasomal degradation. Loss of SOCS activity results in excessive cytokine signaling associated with a variety of hematopoietic, autoimmune, and inflammatory diseases and certain cancers. Members (SOCS4-SOCS7) were identified by their conserved SOCS box, an adapter motif of 3 helices that associates substrate binding domains, such as the SOCS SH2 domain, ankryin, and WD40 with ubiquitin ligase components. These show limited cytokine induction. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.


Pssm-ID: 198251  Cd Length: 101  Bit Score: 57.75  E-value: 3.94e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 206 LHGYTWFHGNLSGKEAEKLILERgKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRWQDKKYDVGGGESFG----TLSE 281
Cdd:cd10388   7 LKDCGWYWGPMSWEDAEKVLSNK-PDGSFLVRDSSDDRYIFSLSFRSQGSVHHTRIEQYQGTFSLGSRNKFVdrsqSLVE 85


                ...
gi 23344946 282 LID 284
Cdd:cd10388  86 FIE 88
SH2_Tec_Itk cd10396
Src homology 2 (SH2) domain found in Tec protein, IL2-inducible T-cell kinase (Itk); A member ...
 206-305 6.01e-10

Src homology 2 (SH2) domain found in Tec protein, IL2-inducible T-cell kinase (Itk); A member of the Tec protein tyrosine kinase Itk is expressed thymus, spleen, lymph node, T lymphocytes, NK and mast cells. It plays a role in T-cell proliferation and differentiation, analogous to Tec family kinases Txk. Itk has been shown to interact with Fyn, Wiskott-Aldrich syndrome protein, KHDRBS1, PLCG1, Lymphocyte cytosolic protein 2, Linker of activated T cells, Karyopherin alpha 2, Grb2, and Peptidylprolyl isomerase A. Most of the Tec family members have a PH domain (Txk and the short (type 1) splice variant of Drosophila Btk29A are exceptions), a Tec homology (TH) domain, a SH3 domain, a SH2 domain, and a protein kinase catalytic domain. The TH domain consists of a Zn2+-binding Btk motif and a proline-rich region. The Btk motif is found in Tec kinases, Ras GAP, and IGBP. It is crucial for the function of Tec PH domains and it's lack of presence in Txk is not surprising since it lacks a PH domain. The type 1 splice form of the Drosophila homolog also lacks both the PH domain and the Btk motif. The proline-rich regions are highly conserved for the most part with the exception of Bmx whose residues surrounding the PXXP motif are not conserved (TH-like) and Btk29A which is entirely unique with large numbers of glycine residues (TH-extended). Tec family members all lack a C-terminal tyrosine having an autoinhibitory function in its phosphorylated state. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.


Pssm-ID: 198259  Cd Length: 108  Bit Score: 57.49  E-value: 6.01e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 206 LHGYTWFHGNLSGKEAEKLILERGKNGSFLVRESqSKPGDFVLSVRT------DDKVTHVMIR---WQDKKYDVGGGESF 276
Cdd:cd10396   3 LDQYEWYNKNINRSKAEKLLRDEGKEGGFMVRDS-SQPGLYTVSLYTkaggegNPCIRHYHIKetnDSPKKYYLAEKHVF 81

                        90       100
                ....*....|....*....|....*....
gi 23344946 277 GTLSELIDHYKRNpmveTCGTVVHLRQPF 305
Cdd:cd10396  82 NSIPELIEYHKHN----AAGLVTRLRYPV 106
SH2_Src_Lyn cd10364
Src homology 2 (SH2) domain found in Lyn; Lyn is a member of the Src non-receptor type ...
 211-288 7.07e-10

Src homology 2 (SH2) domain found in Lyn; Lyn is a member of the Src non-receptor type tyrosine kinase family of proteins and is expressed in the hematopoietic cells, in neural tissues, liver, and adipose tissue. There are two alternatively spliced forms of Lyn. Lyn plays an inhibitory role in myeloid lineage proliferation. Following engagement of the B cell receptors, Lyn undergoes rapid phosphorylation and activation, triggering a cascade of signaling events mediated by Lyn phosphorylation of tyrosine residues within the immunoreceptor tyrosine-based activation motifs (ITAM) of the receptor proteins, and subsequent recruitment and activation of other kinases including Syk, phospholipase C2 (PLC2) and phosphatidyl inositol-3 kinase. These kinases play critical roles in proliferation, Ca2+ mobilization and cell differentiation. Lyn plays an essential role in the transmission of inhibitory signals through phosphorylation of tyrosine residues within the immunoreceptor tyrosine-based inhibitory motifs (ITIM) in regulatory proteins such as CD22, PIR-B and FC RIIb1. Their ITIM phosphorylation subsequently leads to recruitment and activation of phosphatases such as SHIP-1 and SHP-1 which further down modulate signaling pathways, attenuate cell activation and can mediate tolerance. Lyn also plays a role in the insulin signaling pathway. Activated Lyn phosphorylates insulin receptor substrate 1 (IRS1) leading to an increase in translocation of Glut-4 to the cell membrane and increased glucose utilization. It is the primary Src family member involved in signaling downstream of the B cell receptor. Lyn plays an unusual, 2-fold role in B cell receptor signaling; it is essential for initiation of signaling but is also later involved in negative regulation of the signal. Lyn has a unique N-terminal domain, an SH3 domain, an SH2 domain, a kinase domain and a regulatory tail, as do the other members of the family. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.


Pssm-ID: 198227  Cd Length: 101  Bit Score: 56.92  E-value: 7.07e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 211 WFHGNLSGKEAEKLILERGKN-GSFLVRESQSKPGDFVLSVR-----TDDKVTHVMIRWQDK-KYDVGGGESFGTLSELI 283
Cdd:cd10364   5 WFFKDITRKDAERQLLAPGNSaGAFLIRESETLKGSYSLSVRdydpqHGDVIKHYKIRSLDNgGYYISPRITFPCISDMI 84


                ....*
gi 23344946 284 DHYKR 288
Cdd:cd10364  85 KHYQK 89
PTP_DSP_cys cd14494
cys-based protein tyrosine phosphatase and dual-specificity phosphatase superfamily; This ...
 669-740 1.14e-09

cys-based protein tyrosine phosphatase and dual-specificity phosphatase superfamily; This superfamily is composed of cys-based phosphatases, which includes classical protein tyrosine phosphatases (PTPs) as well as dual-specificity phosphatases (DUSPs or DSPs). They are characterized by a CxxxxxR conserved catalytic loop (where C is the catalytic cysteine, x is any amino acid, and R is an arginine). PTPs are part of the tyrosine phosphorylation/dephosphorylation regulatory mechanism, and are important in the response of the cells to physiologic and pathologic changes in their environment. DUSPs show more substrate diversity (including RNA and lipids) and include pTyr, pSer, and pThr phosphatases.


Pssm-ID: 350344 [Multi-domain]  Cd Length: 113  Bit Score: 56.59  E-value: 1.14e-09
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 23344946 669 LAQAGEKPGPICVHCSAGIGRTGTFIVIDMILDQIvrngldteIDIQRTIQMVRSQR-SGLVQTEAQYKFVYY 740
Cdd:cd14494  49 LDQAEKPGEPVLVHCKAGVGRTGTLVACYLVLLGG--------MSAEEAVRIVRLIRpGGIPQTIEQLDFLIK 113
SH2_Src_Fgr cd10367
Src homology 2 (SH2) domain found in Gardner-Rasheed feline sarcoma viral (v-fgr) oncogene ...
 211-286 1.42e-09

Src homology 2 (SH2) domain found in Gardner-Rasheed feline sarcoma viral (v-fgr) oncogene homolog, Fgr; Fgr is a member of the Src non-receptor type tyrosine kinase family of proteins. The protein contains N-terminal sites for myristoylation and palmitoylation, a PTK domain, and SH2 and SH3 domains which are involved in mediating protein-protein interactions with phosphotyrosine-containing and proline-rich motifs, respectively. Fgr is expressed in B-cells and myeloid cells, localizes to plasma membrane ruffles, and functions as a negative regulator of cell migration and adhesion triggered by the beta-2 integrin signal transduction pathway. Multiple alternatively spliced variants, encoding the same protein, have been identified Fgr has been shown to interact with Wiskott-Aldrich syndrome protein. Fgr has a unique N-terminal domain, an SH3 domain, an SH2 domain, a kinase domain and a regulatory tail, as do the other members of the family. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.


Pssm-ID: 198230  Cd Length: 101  Bit Score: 56.07  E-value: 1.42e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 211 WFHGNLSGKEAEKLILERGK-NGSFLVRESQSKPGDFVLSVR-----TDDKVTHVMIRwqdkKYDVGG-----GESFGTL 279
Cdd:cd10367   5 WYFGKIGRKDAERQLLSPGNpRGAFLIRESETTKGAYSLSIRdwdqnRGDHVKHYKIR----KLDTGGyyittRAQFDTV 80


                ....*..
gi 23344946 280 SELIDHY 286
Cdd:cd10367  81 QELVQHY 87
SH2_C-SH2_Syk_like cd10401
C-terminal Src homology 2 (SH2) domain found in Spleen tyrosine kinase (Syk) proteins; ZAP-70 ...
 211-295 1.44e-09

C-terminal Src homology 2 (SH2) domain found in Spleen tyrosine kinase (Syk) proteins; ZAP-70 and Syk comprise a family of hematopoietic cell specific protein tyrosine kinases (PTKs) that are required for antigen and antibody receptor function. ZAP-70 is expressed in T and natural killer (NK) cells and Syk is expressed in B cells, mast cells, polymorphonuclear leukocytes, platelets, macrophages, and immature T cells. They are required for the proper development of T and B cells, immune receptors, and activating NK cells. They consist of two N-terminal Src homology 2 (SH2) domains and a C-terminal kinase domain separated from the SH2 domains by a linker or hinge region. Phosphorylation of both tyrosine residues within the Immunoreceptor Tyrosine-based Activation Motifs (ITAM; consensus sequence Yxx[LI]x(7,8)Yxx[LI]) by the Src-family PTKs is required for efficient interaction of ZAP-70 and Syk with the receptor subunits and for receptor function. ZAP-70 forms two phosphotyrosine binding pockets, one of which is shared by both SH2 domains. In Syk the two SH2 domains do not form such a phosphotyrosine-binding site. The SH2 domains here are believed to function independently. In addition, the two SH2 domains of Syk display flexibility in their relative orientation, allowing Syk to accommodate a greater variety of spacing sequences between the ITAM phosphotyrosines and singly phosphorylated non-classical ITAM ligands. This model contains the C-terminus SH2 domains of Syk. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.


Pssm-ID: 198264  Cd Length: 99  Bit Score: 56.05  E-value: 1.44e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 211 WFHGNLSGKEAEKLILERGK-NGSFLVRESQSKpGDFVLSVRTDDKVTHVMIRwQDK--KYDVGGGESFGTLSELIDHYK 287
Cdd:cd10401   5 WFHGKISREESEQILLIGSKtNGKFLIRERDNN-GSYALCLLHDGKVLHYRID-KDKtgKLSIPDGKKFDTLWQLVEHYS 82

                        90
                ....*....|....
gi 23344946 288 RNP------MVETC 295
Cdd:cd10401  83 YKPdgllrvLTEPC 96
SH2_Src_Fyn_isoform_a_like cd10418
Src homology 2 (SH2) domain found in Fyn isoform a like proteins; Fyn is a member of the Src ...
 211-299 1.60e-09

Src homology 2 (SH2) domain found in Fyn isoform a like proteins; Fyn is a member of the Src non-receptor type tyrosine kinase family of proteins. This cd contains the SH2 domain found in Fyn isoform a type proteins. Fyn is involved in the control of cell growth and is required in the following pathways: T and B cell receptor signaling, integrin-mediated signaling, growth factor and cytokine receptor signaling, platelet activation, ion channel function, cell adhesion, axon guidance, fertilization, entry into mitosis, and differentiation of natural killer cells, oligodendrocytes and keratinocytes. The protein associates with the p85 subunit of phosphatidylinositol 3-kinase and interacts with the Fyn-binding protein. Alternatively spliced transcript variants encoding distinct isoforms exist. Fyn is primarily localized to the cytoplasmic leaflet of the plasma membrane. Tyrosine phosphorylation of target proteins by Fyn serves to either regulate target protein activity, and/or to generate a binding site on the target protein that recruits other signaling molecules. FYN has been shown to interact with a number of proteins including: BCAR1, Cbl, Janus kinase, nephrin, Sky, tyrosine kinase, Wiskott-Aldrich syndrome protein, and Zap-70. Fyn has a unique N-terminal domain, an SH3 domain, an SH2 domain, a kinase domain and a regulatory tail, as do the other members of the family. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.


Pssm-ID: 198281  Cd Length: 101  Bit Score: 55.78  E-value: 1.60e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 211 WFHGNLSGKEAEKLILERGK-NGSFLVRESQSKPGDFVLSVR-----TDDKVTHVMIRwqdkKYDVGG-----GESFGTL 279
Cdd:cd10418   5 WYFGKLGRKDAERQLLSFGNpRGTFLIRESETTKGAYSLSIRdwddmKGDHVKHYKIR----KLDNGGyyittRAQFETL 80

                        90       100
                ....*....|....*....|
gi 23344946 280 SELIDHYKRNPMVETCGTVV 299
Cdd:cd10418  81 QQLVQHYSERAAGLCCRLVV 100
SH2_CRK_like cd09926
Src homology 2 domain found in cancer-related signaling adaptor protein CRK; SH2 domain in the ...
 210-287 1.63e-09

Src homology 2 domain found in cancer-related signaling adaptor protein CRK; SH2 domain in the CRK proteins. CRKI (SH2-SH3) and CRKII (SH2-SH3-SH3) are splicing isoforms of the oncoprotein CRK. CRKs regulate transcription and cytoskeletal reorganization for cell growth and motility by linking tyrosine kinases to small G proteins. The SH2 domain of CRK associates with tyrosine-phosphorylated receptors or components of focal adhesions, such as p130Cas and paxillin. CRK transmits signals to small G proteins through effectors that bind its SH3 domain, such as C3G, the guanine-nucleotide exchange factor (GEF) for Rap1 and R-Ras, and DOCK180, the GEF for Rac6. The binding of p130Cas to the CRK-C3G complex activates Rap1, leading to regulation of cell adhesion, and activates R-Ras, leading to JNK-mediated activation of cell proliferation, whereas the binding of CRK DOCK180 induces Rac1-mediated activation of cellular migration. The activity of the different splicing isoforms varies greatly with CRKI displaying substantial transforming activity, CRKII less so, and phosphorylated CRKII with no biological activity whatsoever. CRKII has a linker region with a phosphorylated Tyr and an additional C-terminal SH3 domain. The phosphorylated Tyr creates a binding site for its SH2 domain which disrupts the association between CRK and its SH2 target proteins. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.


Pssm-ID: 198180 [Multi-domain]  Cd Length: 106  Bit Score: 55.94  E-value: 1.63e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 210 TWFHGNLSGKEAEKLiLERGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMI------RWQDKKYDVgGGESFGTLSELI 283
Cdd:cd09926   8 SWYFGPMSRQEAQEL-LQGQRHGVFLVRDSSTIPGDYVLSVSENSRVSHYIInslgqpAPNQSRYRI-GDQEFDDLPALL 85


                ....
gi 23344946 284 DHYK 287
Cdd:cd09926  86 EFYK 89
SH2_Vav2 cd10406
Src homology 2 (SH2) domain found in the Vav2 proteins; Proto-oncogene vav is a member of the ...
 209-307 2.20e-09

Src homology 2 (SH2) domain found in the Vav2 proteins; Proto-oncogene vav is a member of the Dbl family of guanine nucleotide exchange factors (GEF) for the Rho family of GTP binding proteins. All vavs are activated by tyrosine phosphorylation leading to their activation. There are three Vav mammalian family members: Vav1 which is expressed in the hematopoietic system, and Vav2 and Vav3 are more ubiquitously expressed. Vav2 is a GEF for RhoA, RhoB and RhoG and may activate Rac1 and Cdc42. Vav2 has been shown to interact with CD19 and Grb2. Alternatively spliced transcript variants encoding different isoforms have been found for Vav2. Vav proteins are involved in several processes that require cytoskeletal reorganization, such as the formation of the immunological synapse (IS), phagocytosis, platelet aggregation, spreading, and transformation. Vavs function as guanine nucleotide exchange factors (GEFs) for the Rho/Rac family of GTPases. Vav family members have several conserved motifs/domains including: a leucine-rich region, a leucine-zipper, a calponin homology (CH) domain, an acidic domain, a Dbl-homology (DH) domain, a pleckstrin homology (PH) domain, a cysteine-rich domain, 2 SH3 domains, a proline-rich region, and a SH2 domain. Vavs are the only known Rho GEFs that have both the DH/PH motifs and SH2/SH3 domains in the same protein. The leucine-rich helix-loop-helix (HLH) domain is thought to be involved in protein heterodimerization with other HLH proteins and it may function as a negative regulator by forming inactive heterodimers. The CH domain is usually involved in the association with filamentous actin, but in Vav it controls NFAT stimulation, Ca2+ mobilization, and its transforming activity. Acidic domains are involved in protein-protein interactions and contain regulatory tyrosines. The DH domain is a GDP-GTP exchange factor on Rho/Rac GTPases. The PH domain in involved in interactions with GTP-binding proteins, lipids and/or phosphorylated serine/threonine residues. The SH3 domain is involved in localization of proteins to specific sites within the cell interacting with protein with proline-rich sequences. The SH2 domain mediates a high affinity interaction with tyrosine phosphorylated proteins. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.


Pssm-ID: 198269  Cd Length: 103  Bit Score: 55.46  E-value: 2.20e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 209 YTWFHGNLSGKEAEKLiLERGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRWQDKKYDVGGGESFGTLSELIDHYKR 288
Cdd:cd10406   5 YPWFAGNMERQQTDNL-LKSHASGTYLIRERPAEAERFAISIKFNDEVKHIKVVEKDNWIHITEAKKFESLLELVEYYQC 83

                        90       100
                ....*....|....*....|
gi 23344946 289 NPMVETCGTV-VHLRQPFNA 307
Cdd:cd10406  84 HSLKESFKQLdTTLKYPYKS 103
SH2_SH2B2 cd10411
Src homology 2 (SH2) domain found in SH2B adapter proteins (SH2B1, SH2B2, SH2B3); SH2B2 (APS), ...
 202-291 2.21e-09

Src homology 2 (SH2) domain found in SH2B adapter proteins (SH2B1, SH2B2, SH2B3); SH2B2 (APS), like other members of the SH2B adapter protein family, contains a pleckstrin homology domain, at least one dimerization domain, and a C-terminal SH2 domain which binds to phosphorylated tyrosines in a variety of tyrosine kinases. SH2B1 and SH2B2 function in signaling pathways found downstream of growth hormone receptor and receptor tyrosine kinases, including the insulin, insulin-like growth factor-I (IGF-I), platelet-derived growth factor (PDGF), nerve growth factor, hepatocyte growth factor, and fibroblast growth factor receptors. SH2B2beta, a new isoform of SH2B2, is an endogenous inhibitor of SH2B1 and/or SH2B2 (SH2B2alpha), negatively regulating insulin signaling and/or JAK2-mediated cellular responses. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.


Pssm-ID: 198274  Cd Length: 97  Bit Score: 55.39  E-value: 2.21e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 202 MRVQLHGYTWFHGNLSGKEAEKLILERG--KNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRWQDKKYDVGGGESFGTL 279
Cdd:cd10411   1 AELELSDYPWFHGTLSRVKAAQLVLAGGprSHGLFVIRQSETRPGEYVLTFNFQGKAKHLRLSLNGHGQCHVQHLWFQSV 80

                        90
                ....*....|..
gi 23344946 280 SELIDHYKRNPM 291
Cdd:cd10411  81 FDMLRHFHTHPI 92
SH2_SLAP cd10344
Src homology 2 domain found in Src-like adaptor proteins; SLAP belongs to the subfamily of ...
 207-286 2.26e-09

Src homology 2 domain found in Src-like adaptor proteins; SLAP belongs to the subfamily of adapter proteins that negatively regulate cellular signaling initiated by tyrosine kinases. It has a myristylated N-terminus, SH3 and SH2 domains with high homology to Src family tyrosine kinases, and a unique C-terminal tail, which is important for c-Cbl binding. SLAP negatively regulates platelet-derived growth factor (PDGF)-induced mitogenesis in fibroblasts and regulates F-actin assembly for dorsal ruffles formation. c-Cbl mediated SLAP inhibition towards actin remodeling. Moreover, SLAP enhanced PDGF-induced c-Cbl phosphorylation by SFK. In contrast, SLAP mitogenic inhibition was not mediated by c-Cbl, but it rather involved a competitive mechanism with SFK for PDGF-receptor (PDGFR) association and mitogenic signaling. Accordingly, phosphorylation of the Src mitogenic substrates Stat3 and Shc were reduced by SLAP. Thus, we concluded that SLAP regulates PDGFR signaling by two independent mechanisms: a competitive mechanism for PDGF-induced Src mitogenic signaling and a non-competitive mechanism for dorsal ruffles formation mediated by c-Cbl. SLAP is a hematopoietic adaptor containing Src homology (SH)3 and SH2 motifs and a unique carboxy terminus. Unlike c-Src, SLAP lacks a tyrosine kinase domain. Unlike c-Src, SLAP does not impact resorptive function of mature osteoclasts but induces their early apoptosis. SLAP negatively regulates differentiation of osteoclasts and proliferation of their precursors. Conversely, SLAP decreases osteoclast death by inhibiting activation of caspase 3. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.


Pssm-ID: 198207  Cd Length: 104  Bit Score: 55.58  E-value: 2.26e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 207 HGytWFHGNLSGKEAEKLILERG-KNGSFLVRESQSKPGDFVLSVR-----TDDKVTHVMI-RWQDKKYDVGGGESFGTL 279
Cdd:cd10344  10 HG--WLFEGLSREKAEELLMLPGnQVGSFLIRESETRRGCYSLSVRhrgsqSRDSVKHYRIfRLDNGWFYISPRLTFQCL 87


                ....*..
gi 23344946 280 SELIDHY 286
Cdd:cd10344  88 EDMVNHY 94
SH2_Vav1 cd10405
Src homology 2 (SH2) domain found in the Vav1 proteins; Proto-oncogene vav is a member of the ...
 209-291 2.33e-09

Src homology 2 (SH2) domain found in the Vav1 proteins; Proto-oncogene vav is a member of the Dbl family of guanine nucleotide exchange factors (GEF) for the Rho family of GTP binding proteins. All vavs are activated by tyrosine phosphorylation leading to their activation. There are three Vav mammalian family members: Vav1 which is expressed in the hematopoietic system, and Vav2 and Vav3 are more ubiquitously expressed. Vav1 plays a role in T-cell and B-cell development and activation. It has been identified as the specific binding partner of Nef proteins from HIV-1, resulting in morphological changes, cytoskeletal rearrangements, and the JNK/SAPK signaling cascade, leading to increased levels of viral transcription and replication. Vav1 has been shown to interact with Ku70, PLCG1, Lymphocyte cytosolic protein 2, Janus kinase 2, SIAH2, S100B, Abl gene, ARHGDIB, SHB, PIK3R1, PRKCQ, Grb2, MAPK1, Syk, Linker of activated T cells, Cbl gene and EZH2. Vav proteins are involved in several processes that require cytoskeletal reorganization, such as the formation of the immunological synapse (IS), phagocytosis, platelet aggregation, spreading, and transformation. Vavs function as guanine nucleotide exchange factors (GEFs) for the Rho/Rac family of GTPases. Vav family members have several conserved motifs/domains including: a leucine-rich region, a leucine-zipper, a calponin homology (CH) domain, an acidic domain, a Dbl-homology (DH) domain, a pleckstrin homology (PH) domain, a cysteine-rich domain, 2 SH3 domains, a proline-rich region, and a SH2 domain. Vavs are the only known Rho GEFs that have both the DH/PH motifs and SH2/SH3 domains in the same protein. The leucine-rich helix-loop-helix (HLH) domain is thought to be involved in protein heterodimerization with other HLH proteins and it may function as a negative regulator by forming inactive heterodimers. The CH domain is usually involved in the association with filamentous actin, but in Vav it controls NFAT stimulation, Ca2+ mobilization, and its transforming activity. Acidic domains are involved in protein-protein interactions and contain regulatory tyrosines. The DH domain is a GDP-GTP exchange factor on Rho/Rac GTPases. The PH domain in involved in interactions with GTP-binding proteins, lipids and/or phosphorylated serine/threonine residues. The SH3 domain is involved in localization of proteins to specific sites within the cell interacting with protein with proline-rich sequences. The SH2 domain mediates a high affinity interaction with tyrosine phosphorylated proteins. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.


Pssm-ID: 198268  Cd Length: 103  Bit Score: 55.40  E-value: 2.33e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 209 YTWFHGNLSGKEAEKLILERgKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRWQDKKYDVGGGESFGTLSELIDHYKR 288
Cdd:cd10405   5 HLWYAGPMERAGAESILANR-SDGTYLVRQRVKDAAEFAISIKYNVEVKHIKIMTAEGLYRITEKKAFRGLTELVEFYQQ 83


                ...
gi 23344946 289 NPM 291
Cdd:cd10405  84 NSL 86
SH2_Src_Fyn cd10368
Src homology 2 (SH2) domain found in Fyn; Fyn is a member of the Src non-receptor type ...
 207-299 2.53e-09

Src homology 2 (SH2) domain found in Fyn; Fyn is a member of the Src non-receptor type tyrosine kinase family of proteins. Fyn is involved in the control of cell growth and is required in the following pathways: T and B cell receptor signaling, integrin-mediated signaling, growth factor and cytokine receptor signaling, platelet activation, ion channel function, cell adhesion, axon guidance, fertilization, entry into mitosis, and differentiation of natural killer cells, oligodendrocytes and keratinocytes. The protein associates with the p85 subunit of phosphatidylinositol 3-kinase and interacts with the Fyn-binding protein. Alternatively spliced transcript variants encoding distinct isoforms exist. Fyn is primarily localized to the cytoplasmic leaflet of the plasma membrane. Tyrosine phosphorylation of target proteins by Fyn serves to either regulate target protein activity, and/or to generate a binding site on the target protein that recruits other signaling molecules. FYN has been shown to interact with a number of proteins including: BCAR1, Cbl, Janus kinase, nephrin, Sky, tyrosine kinase, Wiskott-Aldrich syndrome protein, and Zap-70. Fyn has a unique N-terminal domain, an SH3 domain, an SH2 domain, a kinase domain and a regulatory tail, as do the other members of the family. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.


Pssm-ID: 198231 [Multi-domain]  Cd Length: 101  Bit Score: 55.42  E-value: 2.53e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 207 HGYTWFHGNLSGKEAEKLILERGK-NGSFLVRESQSKPGDFVLSVR-----TDDKVTHVMIRWQDK-KYDVGGGESFGTL 279
Cdd:cd10368   1 QAEEWYFGKLGRKDAERQLLSFGNpRGTFLIRESETTKGAYSLSIRdwddmKGDHVKHYKIRKLDNgGYYITTRAQFETL 80

                        90       100
                ....*....|....*....|
gi 23344946 280 SELIDHYKRNPMVETCGTVV 299
Cdd:cd10368  81 QQLVQHYSETANGLCKVLIV 100
SH2_SHF cd10392
Src homology 2 domain found in SH2 domain-containing adapter protein F (SHF); SHF is thought ...
 211-286 2.90e-09

Src homology 2 domain found in SH2 domain-containing adapter protein F (SHF); SHF is thought to play a role in PDGF-receptor signaling and regulation of apoptosis. SHF is mainly expressed in skeletal muscle, brain, liver, prostate, testis, ovary, small intestine, and colon. SHF contains four putative tyrosine phosphorylation sites and an SH2 domain. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.


Pssm-ID: 198255  Cd Length: 98  Bit Score: 55.08  E-value: 2.90e-09
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 23344946 211 WFHGNLSGKEAEKLiLERGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMI-RWQDKKYDVGGGES-FGTLSELIDHY 286
Cdd:cd10392   3 WYHGAISRTDAENL-LRLCKEASYLVRNSETSKNDFSLSLKSSQGFMHMKLsRTKEHKYVLGQNSPpFSSVPEIIHHY 79
SH2_SHD cd10390
Src homology 2 domain found in SH2 domain-containing adapter proteins D (SHD); The expression ...
 211-291 3.53e-09

Src homology 2 domain found in SH2 domain-containing adapter proteins D (SHD); The expression of SHD is restricted to the brain. SHD may be a physiological substrate of c-Abl and may function as an adapter protein in the central nervous system. It is also thought to be involved in apoptotic regulation. SHD contains five YXXP motifs, a substrate sequence preferred by Abl tyrosine kinases, in addition to a poly-proline rich region and a C-terminal SH2 domain. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.


Pssm-ID: 198253  Cd Length: 98  Bit Score: 55.09  E-value: 3.53e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 211 WFHGNLSGKEAEKLiLERGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRWQDKKYDVGGGES--FGTLSELIDHYKR 288
Cdd:cd10390   3 WFHGPLSRADAENL-LSLCKEGSYLVRLSETRPQDCSLSLRSSQGFLHLKFARTRENQVVLGQHSgpFPSVPELVLHYSS 81


                ...
gi 23344946 289 NPM 291
Cdd:cd10390  82 RPL 84
SH2_Grb7 cd10413
Src homology 2 (SH2) domain found in the growth factor receptor bound, subclass 7 (Grb7) ...
 211-295 4.58e-09

Src homology 2 (SH2) domain found in the growth factor receptor bound, subclass 7 (Grb7) proteins; The Grb family binds to the epidermal growth factor receptor (EGFR, erbB1) via their SH2 domains. Grb7 is part of the Grb7 family of proteins which also includes Grb10, and Grb14. They are composed of an N-terminal Proline-rich domain, a Ras Associating-like (RA) domain, a Pleckstrin Homology (PH) domain, a phosphotyrosine interaction region (PIR, BPS) and a C-terminal SH2 domain. The SH2 domains of Grb7, Grb10 and Grb14 preferentially bind to a different RTK. Grb7 binds strongly to the erbB2 receptor, unlike Grb10 and Grb14 which bind weakly to it. Grb7 family proteins are phosphorylated on serine/threonine as well as tyrosine residues. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.


Pssm-ID: 198276  Cd Length: 108  Bit Score: 54.91  E-value: 4.58e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 211 WFHGNLSGKEAEKLILERGK-NGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRWQDKK----YDVGGGES-FGTLSELID 284
Cdd:cd10413   7 WFHGRISREESQRLIGQQGLvDGVFLVRESQRNPQGFVLSLCHLQKVKHYLILPSEEEgrlyFSMDDGQTrFTDLLQLVE 86

                        90
                ....*....|.
gi 23344946 285 HYKRNPMVETC 295
Cdd:cd10413  87 FHQLNRGILPC 97
DUSP23 cd14504
dual specificity phosphatase 23; Dual specificity phosphatase 23 (DUSP23), also known as ...
 633-738 4.74e-09

dual specificity phosphatase 23; Dual specificity phosphatase 23 (DUSP23), also known as VH1-like phosphatase Z (VHZ) or low molecular mass dual specificity phosphatase 3 (LDP-3), functions as a protein-serine/threonine phosphatase (EC 3.1.3.16) and a protein-tyrosine-phosphatase (EC 3.1.3.48). It deactivates its MAPK substrates by dephosphorylating the threonine and tyrosine residues in the conserved Thr-Xaa-Tyr motif residing in their activation sites. DUSP23 is an atypical DUSP; it contains the catalytic dual specificity phosphatase domain but lacks the N-terminal Cdc25/rhodanese-like domain that is present in typical DUSPs or MKPs. It is able to enhance activation of JNK and p38 MAPK, and has been shown to dephosphorylate p44-ERK1 (MAPK3) in vitro. It has been associated with cell growth and human primary cancers. It has also been identified as a cell-cell adhesion regulatory protein; it promotes the dephosphorylation of beta-catenin at Tyr 142 and enhances the interaction between alpha- and beta-catenin.


Pssm-ID: 350354 [Multi-domain]  Cd Length: 142  Bit Score: 55.75  E-value: 4.74e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 633 RRIFHYHFQVwPDHGVPADPGcVLNFLQDVNtrqshlaQAGEKPGPICVHCSAGIGRTGTfividMILDQIVRNGLDTEI 712
Cdd:cd14504  48 PGLRYHHIPI-EDYTPPTLEQ-IDEFLDIVE-------EANAKNEAVLVHCLAGKGRTGT-----MLACYLVKTGKISAV 113

                        90       100
                ....*....|....*....|....*.
gi 23344946 713 DiqrTIQMVRSQRSGLVQTEAQYKFV 738
Cdd:cd14504 114 D---AINEIRRIRPGSIETSEQEKFV 136
R-PTP-G-2 cd17670
PTP-like domain of receptor-type tyrosine-protein phosphatase G, repeat 2; Receptor-type ...
 558-742 5.09e-09

PTP-like domain of receptor-type tyrosine-protein phosphatase G, repeat 2; Receptor-type tyrosine-protein phosphatase G (PTPRG), also called protein-tyrosine phosphatase gamma (R-PTP-gamma), belongs to the family of classical tyrosine-specific protein tyrosine phosphatases (PTPs). PTPs (EC 3.1.3.48) catalyze the dephosphorylation of phosphotyrosine peptides. PTPRG is an important tumor suppressor gene in multiple human cancers such as lung, ovarian, and breast cancers. It is widely expressed in many tissues, including the central nervous system, where it plays a role during neuroinflammation processes. It can dephosphorylate platelet-derived growth factor receptor beta (PDGFRB) and may play a role in PDGFRB-related infantile myofibromatosis. PTPRG is a type 1 integral membrane protein consisting of an extracellular region with a carbonic anhydrase-like (CAH) and a fibronectin type III (FN3) domains, and an intracellular region with a catalytic PTP domain (repeat 1) proximal to the membrane, and a catalytically inactive PTP-fold domain (repeat 2) distal to the membrane. This model represents the inactive PTP-like domain (repeat 2).


Pssm-ID: 350508 [Multi-domain]  Cd Length: 205  Bit Score: 57.38  E-value: 5.09e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 558 NTVTDFWNMVWQENTRVIVMTTKEYERGKEKCArYWPDEGRS---EQFGHARIQ----CVSenSTSDYTLREFLV-SWRD 629
Cdd:cd17670  25 HTTKDFWRMIWDHNAQIIVMLPDNQGLAEDEFV-YWPSREESmncEAFTVTLISkdrlCLS--NEEQIIIHDFILeATQD 101

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 630 QPARRIFHYHFQVWPDHGVPADPGC-VLNFLQDvntrqshlaQAGEKPGPICVHCSAGIGRTGTFIVIDMILDQIVRngl 708
Cdd:cd17670 102 DYVLEVRHFQCPKWPNPDAPISSTFeLINVIKE---------EALTRDGPTIVHDEFGAVSAGTLCALTTLSQQLEN--- 169

                       170       180       190
                ....*....|....*....|....*....|....
gi 23344946 709 DTEIDIQRTIQMVRSQRSGLVQTEAQYKFVYYAV 742
Cdd:cd17670 170 ENAVDVYQVAKMINLMRPGVFTDIEQYQFLYKAM 203
SH2_Src_Src cd10365
Src homology 2 (SH2) domain found in tyrosine kinase sarcoma (Src); Src is a member of the Src ...
 211-289 7.42e-09

Src homology 2 (SH2) domain found in tyrosine kinase sarcoma (Src); Src is a member of the Src non-receptor type tyrosine kinase family of proteins. Src is thought to play a role in the regulation of embryonic development and cell growth. Members here include v-Src and c-Src. v-Src lacks the C-terminal inhibitory phosphorylation site and is therefore constitutively active as opposed to normal cellular src (c-Src) which is only activated under certain circumstances where it is required (e.g. growth factor signaling). v-Src is an oncogene whereas c-Src is a proto-oncogene. c-Src consists of three domains, an N-terminal SH3 domain, a central SH2 domain and a tyrosine kinase domain. The SH2 and SH3 domains work together in the auto-inhibition of the kinase domain. The phosphorylation of an inhibitory tyrosine near the c-terminus of the protein produces a binding site for the SH2 domain which then facilitates binding of the SH3 domain to a polyproline site within the linker between the SH2 domain and the kinase domain. Binding of the SH3 domain inactivates the enzyme. This allows for multiple mechanisms for c-Src activation: dephosphorylation of the C-terminal tyrosine by a protein tyrosine phosphatase, binding of the SH2 domain by a competitive phospho-tyrosine residue, or competitive binding of a polyproline binding site to the SH3 domain. Unlike most other Src members Src lacks cysteine residues in the SH4 domain that undergo palmitylation. Serine and threonine phosphorylation sites have also been identified in the unique domains of Src and are believed to modulate protein-protein interactions or regulate catalytic activity. Alternatively spliced forms of Src, which contain 6- or 11-amino acid insertions in the SH3 domain, are expressed in CNS neurons. c-Src has a unique N-terminal domain, an SH3 domain, an SH2 domain, a kinase domain and a regulatory tail, as do the other members of the family. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.


Pssm-ID: 198228  Cd Length: 101  Bit Score: 53.90  E-value: 7.42e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 211 WFHGNLSGKEAEKLILE-RGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIR-WQDKKYDVGG-----GESFGTLSELI 283
Cdd:cd10365   5 WYFGKITRRESERLLLNaENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKhYKIRKLDSGGfyitsRTQFNSLQQLV 84


                ....*.
gi 23344946 284 DHYKRN 289
Cdd:cd10365  85 AYYSKH 90
SH2_nSH2_p85_like cd09942
N-terminal Src homology 2 (nSH2) domain found in p85; Phosphoinositide 3-kinases (PI3Ks) are ...
 210-293 9.95e-09

N-terminal Src homology 2 (nSH2) domain found in p85; Phosphoinositide 3-kinases (PI3Ks) are essential for cell growth, migration, and survival. p110, the catalytic subunit, is composed of an adaptor-binding domain, a Ras-binding domain, a C2 domain, a helical domain, and a kinase domain. The regulatory unit is called p85 and is composed of an SH3 domain, a RhoGap domain, a N-terminal SH2 (nSH2) domain, an internal SH2 (iSH2) domain, and C-terminal (cSH2) domain. There are 2 inhibitory interactions between p110alpha and p85 of P13K: (1) p85 nSH2 domain with the C2, helical, and kinase domains of p110alpha and (2) p85 iSH2 domain with C2 domain of p110alpha. There are 3 inhibitory interactions between p110beta and p85 of P13K: (1) p85 nSH2 domain with the C2, helical, and kinase domains of p110beta, (2) p85 iSH2 domain with C2 domain of p110alpha, and (3) p85 cSH2 domain with the kinase domain of p110alpha. It is interesting to note that p110beta is oncogenic as a wild type protein while p110alpha lacks this ability. One explanation is the idea that the regulation of p110beta by p85 is unique because of the addition of inhibitory contacts from the cSH2 domain and the loss of contacts in the iSH2 domain. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.


Pssm-ID: 198195  Cd Length: 110  Bit Score: 53.87  E-value: 9.95e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 210 TWFHGNLSGKEA-EKLileRGK-NGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRWQDKKYDVGGGESFGTLSELIDHYK 287
Cdd:cd09942   8 EWYWGDISREEVnEKM---RDTpDGTFLVRDASTMKGDYTLTLRKGGNNKLIKIFHRDGKYGFSDPLTFNSVVELINYYR 84


                ....*.
gi 23344946 288 RNPMVE 293
Cdd:cd09942  85 NNSLAE 90
PTP_PTPDC1 cd14506
protein tyrosine phosphatase domain of PTP domain-containing protein 1; protein tyrosine ...
 632-738 1.01e-08

protein tyrosine phosphatase domain of PTP domain-containing protein 1; protein tyrosine phosphatase domain-containing protein 1 (PTPDC1) is an uncharacterized non-receptor class protein-tyrosine phosphatase (PTP). PTPs (EC 3.1.3.48) catalyze the dephosphorylation of phosphotyrosine peptides. Small interfering RNA (siRNA) knockdown of the ptpdc1 gene is associated with elongated cilia.


Pssm-ID: 350356 [Multi-domain]  Cd Length: 206  Bit Score: 56.20  E-value: 1.01e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 632 ARRIFHYHFQvWPDHGVPAdpgcvLNFLQDVntrQSHLAQAGEKPGPICVHCSAGIGRTGTFIVIDMIldqivrngLDTE 711
Cdd:cd14506  74 RAGIYFYNFG-WKDYGVPS-----LTTILDI---VKVMAFALQEGGKVAVHCHAGLGRTGVLIACYLV--------YALR 136

                        90       100
                ....*....|....*....|....*..
gi 23344946 712 IDIQRTIQMVRSQRSGLVQTEAQYKFV 738
Cdd:cd14506 137 MSADQAIRLVRSKRPNSIQTRGQVLCV 163
SH2_Src_Blk cd10371
Src homology 2 (SH2) domain found in B lymphoid kinase (Blk); Blk is a member of the Src ...
 211-288 1.69e-08

Src homology 2 (SH2) domain found in B lymphoid kinase (Blk); Blk is a member of the Src non-receptor type tyrosine kinase family of proteins. Blk is expressed in the B-cells. Unlike most other Src members Blk lacks cysteine residues in the SH4 domain that undergo palmitylation. Blk is required for the development of IL-17-producing gamma-delta T cells. Furthermore, Blk is expressed in lymphoid precursors and, in this capacity, plays a role in regulating thymus cellularity during ontogeny. Blk has a unique N-terminal domain, an SH3 domain, an SH2 domain, a kinase domain and a regulatory tail, as do the other members of the family. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.


Pssm-ID: 198234 [Multi-domain]  Cd Length: 100  Bit Score: 53.10  E-value: 1.69e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 211 WFHGNLSGKEAEK-LILERGKNGSFLVRESQSKPGDFVLSVR----TDDKVTHVMIRWQDK-KYDVGGGESFGTLSELID 284
Cdd:cd10371   5 WFFRTISRKDAERqLLAPMNKAGSFLIRESESNKGAFSLSVKdvttQGEVVKHYKIRSLDNgGYYISPRITFPTLQALVQ 84


                ....
gi 23344946 285 HYKR 288
Cdd:cd10371  85 HYSK 88
SH2_Tec_Txk cd10398
Src homology 2 (SH2) domain found in Tec protein, Txk; A member of the Tec protein tyrosine ...
 206-304 1.77e-08

Src homology 2 (SH2) domain found in Tec protein, Txk; A member of the Tec protein tyrosine kinase Txk is expressed in thymus, spleen, lymph node, T lymphocytes, NK cells, mast cell lines, and myeloid cell line. Txk plays a role in TCR signal transduction, T cell development, and selection which is analogous to the function of Itk. Txk has been shown to interact with IFN-gamma. Unlike most of the Tec family members Txk lacks a PH domain. Instead Txk has a unique region containing a palmitoylated cysteine string which has a similar membrane tethering function as the PH domain. Txk also has a zinc-binding motif, a SH3 domain, a SH2 domain, and a protein kinase catalytic domain. The TH domain consists of a Zn2+-binding Btk motif and a proline-rich region. The Btk motif is found in Tec kinases, Ras GAP, and IGBP and crucial to the function of the PH domain. It is not present in Txk which is not surprising since it lacks a PH domain. The type 1 splice form of the Drosophila homolog also lacks both the PH domain and the Btk motif. The proline-rich regions are highly conserved for the most part with the exception of Bmx whose residues surrounding the PXXP motif are not conserved (TH-like) and Btk29A which is entirely unique with large numbers of glycine residues (TH-extended). Tec family members all lack a C-terminal tyrosine having an autoinhibitory function in its phosphorylated state. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.


Pssm-ID: 198261  Cd Length: 106  Bit Score: 53.03  E-value: 1.77e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 206 LHGYTWFHGNLSGKEAEKLILERGKNGSFLVRESqSKPGDFVLSVRTDDK------VTHVMIRWQD-KKYDVGGGESFGT 278
Cdd:cd10398   3 LEIYEWYHKNITRNQAERLLRQESKEGAFIVRDS-RHLGSYTISVFTRARrsteasIKHYQIKKNDsGQWYVAERHLFQS 81

                        90       100
                ....*....|....*....|....*.
gi 23344946 279 LSELIDHYKRNpmveTCGTVVHLRQP 304
Cdd:cd10398  82 IPELIQYHQHN----AAGLMSRLRYP 103
SH2_SOCS_family cd09923
Src homology 2 (SH2) domain found in suppressor of cytokine signaling (SOCS) family; SH2 ...
 211-287 1.82e-08

Src homology 2 (SH2) domain found in suppressor of cytokine signaling (SOCS) family; SH2 domain found in SOCS proteins. SOCS was first recognized as a group of cytokine-inducible SH2 (CIS) domain proteins comprising eight family members in human (CIS and SOCS1-SOCS7). In addition to the SH2 domain, SOCS proteins have a variable N-terminal domain and a conserved SOCS box in the C-terminal domain. SOCS proteins bind to a substrate via their SH2 domain. The prototypical members, CIS and SOCS1-SOCS3, have been shown to regulate growth hormone signaling in vitro and in a classic negative feedback response compete for binding at phosphotyrosine sites in JAK kinase and receptor pathways to displace effector proteins and target bound receptors for proteasomal degradation. Loss of SOCS activity results in excessive cytokine signaling associated with a variety of hematopoietic, autoimmune, and inflammatory diseases and certain cancers. Members (SOCS4-SOCS7) were identified by their conserved SOCS box, an adapter motif of 3 helices that associates substrate binding domains, such as the SOCS SH2 domain, ankryin, and WD40 with ubiquitin ligase components. These show limited cytokine induction. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.


Pssm-ID: 198178  Cd Length: 81  Bit Score: 52.20  E-value: 1.82e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 211 WFHGNLSGKEAEKLiLERGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRWQDKKY----DVGGGESFGTLSELIDHY 286
Cdd:cd09923   2 WYWGGITRYEAEEL-LAGKPEGTFLVRDSSDSRYLFSVSFRTYGRTLHARIEYSNGRFsfdsSDPSVPRFPCVVELIEHY 80


                .
gi 23344946 287 K 287
Cdd:cd09923  81 V 81
SH2_Src_Fyn_isoform_b_like cd10419
Src homology 2 (SH2) domain found in Fyn isoform b like proteins; Fyn is a member of the Src ...
 207-286 2.22e-08

Src homology 2 (SH2) domain found in Fyn isoform b like proteins; Fyn is a member of the Src non-receptor type tyrosine kinase family of proteins. This cd contains the SH2 domain found in Fyn isoform b type proteins. Fyn is involved in the control of cell growth and is required in the following pathways: T and B cell receptor signaling, integrin-mediated signaling, growth factor and cytokine receptor signaling, platelet activation, ion channel function, cell adhesion, axon guidance, fertilization, entry into mitosis, and differentiation of natural killer cells, oligodendrocytes and keratinocytes. The protein associates with the p85 subunit of phosphatidylinositol 3-kinase and interacts with the Fyn-binding protein. Alternatively spliced transcript variants encoding distinct isoforms exist. Fyn is primarily localized to the cytoplasmic leaflet of the plasma membrane. Tyrosine phosphorylation of target proteins by Fyn serves to either regulate target protein activity, and/or to generate a binding site on the target protein that recruits other signaling molecules. FYN has been shown to interact with a number of proteins including: BCAR1, Cbl, Janus kinase, nephrin, Sky, tyrosine kinase, Wiskott-Aldrich syndrome protein, and Zap-70. Fyn has a unique N-terminal domain, an SH3 domain, an SH2 domain, a kinase domain and a regulatory tail, as do the other members of the family. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.


Pssm-ID: 198282  Cd Length: 101  Bit Score: 52.75  E-value: 2.22e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 207 HGYTWFHGNLSGKEAEKLILERGK-NGSFLVRESQSKPGDFVLSVR-----TDDKVTHVMIRWQDK-KYDVGGGESFGTL 279
Cdd:cd10419   1 QAEEWYFGKLGRKDAERQLLSFGNpRGTFLIRESETTKGAYSLSIRdwddmKGDHVKHYKIRKLDNgGYYITTRAQFETL 80


                ....*..
gi 23344946 280 SELIDHY 286
Cdd:cd10419  81 QQLVQHY 87
SH2_C-SH2_Zap70 cd10402
C-terminal Src homology 2 (SH2) domain found in Zeta-chain-associated protein kinase 70 ...
 211-304 2.52e-08

C-terminal Src homology 2 (SH2) domain found in Zeta-chain-associated protein kinase 70 (ZAP-70); ZAP-70 and Syk comprise a family of hematopoietic cell specific protein tyrosine kinases (PTKs) that are required for antigen and antibody receptor function. ZAP-70 is expressed in T and natural killer (NK) cells and Syk is expressed in B cells, mast cells, polymorphonuclear leukocytes, platelets, macrophages, and immature T cells. They are required for the proper development of T and B cells, immune receptors, and activating NK cells. They consist of two N-terminal Src homology 2 (SH2) domains and a C-terminal kinase domain separated from the SH2 domains by a linker or hinge region. Phosphorylation of both tyrosine residues within the Immunoreceptor Tyrosine-based Activation Motifs (ITAM; consensus sequence Yxx[LI]x(7,8)Yxx[LI]) by the Src-family PTKs is required for efficient interaction of ZAP-70 and Syk with the receptor subunits and for receptor function. ZAP-70 forms two phosphotyrosine binding pockets, one of which is shared by both SH2 domains. In Syk the two SH2 domains do not form such a phosphotyrosine-binding site. The SH2 domains here are believed to function independently. In addition, the two SH2 domains of Syk display flexibility in their relative orientation, allowing Syk to accommodate a greater variety of spacing sequences between the ITAM phosphotyrosines and singly phosphorylated non-classical ITAM ligands. This model contains the C-terminus SH2 domains of Zap70. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.


Pssm-ID: 198265  Cd Length: 105  Bit Score: 52.62  E-value: 2.52e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 211 WFHGNLSGKEAE-KLILERGKNGSFLVRESQSKpGDFVLSVRTDDKVTHVMIRwQDK--KYDVGGGESFGTLSELIDHYK 287
Cdd:cd10402  12 WYHGSIARDEAErRLYSGAQPDGKFLLRERKES-GTYALSLVYGKTVYHYRID-QDKsgKYSIPEGTKFDTLWQLVEYLK 89

                        90
                ....*....|....*..
gi 23344946 288 RNPMvetcGTVVHLRQP 304
Cdd:cd10402  90 LKPD----GLIFVLRES 102
SH2_a2chimerin_b2chimerin cd10352
Src homology 2 (SH2) domain found in alpha2-chimerin and beta2-chimerin proteins; Chimerins ...
 212-283 4.06e-08

Src homology 2 (SH2) domain found in alpha2-chimerin and beta2-chimerin proteins; Chimerins are a family of phorbol ester- and diacylglycerol-responsive GTPase-activating proteins. Alpha1-chimerin (formerly known as n-chimerin) and alpha2-chimerin are alternatively spliced products of a single gene, as are beta1- and beta2-chimerin. alpha1- and beta1-chimerin have a relatively short N-terminal region that does not encode any recognizable domains, whereas alpha2- and beta2-chimerin both include a functional SH2 domain that can bind to phosphotyrosine motifs within receptors. All of the isoforms contain a GAP domain with specificity in vitro for Rac1 and a diacylglycerol (DAG)-binding C1 domain which allows them to translocate to membranes in response to DAG signaling and anchors them in close proximity to activated Rac. Other C1 domain-containing diacylglycerol receptors including: PKC, Munc-13 proteins, phorbol ester binding scaffolding proteins involved in Ca2+-stimulated exocytosis, and RasGRPs, diacylglycerol-activated guanine-nucleotide exchange factors (GEFs) for Ras and Rap1. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.


Pssm-ID: 198215  Cd Length: 91  Bit Score: 51.60  E-value: 4.06e-08
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 23344946 212 FHGNLSGKEAEKLILERGkNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRWQDKKYDVGGGE-SFGTLSELI 283
Cdd:cd10352   9 YHGLISREEAEQLLSGAS-DGSYLIRESSRDDGYYTLSLRFNGKVKNYKLYYDGKNHYHYVGEkRFDTIHDLV 80
SH2_Grb10 cd10415
Src homology 2 (SH2) domain found in the growth factor receptor bound, subclass 10 (Grb10) ...
 211-295 4.15e-08

Src homology 2 (SH2) domain found in the growth factor receptor bound, subclass 10 (Grb10) proteins; The Grb family binds to the epidermal growth factor receptor (EGFR, erbB1) via their SH2 domains. Grb10 is part of the Grb7 family of proteins which also includes Grb7, and Grb14. They are composed of an N-terminal Proline-rich domain, a Ras Associating-like (RA) domain, a Pleckstrin Homology (PH) domain, a phosphotyrosine interaction region (PIR, BPS) and a C-terminal SH2 domain. The SH2 domains of Grb7, Grb10 and Grb14 preferentially bind to a different RTK. Grb10 has been shown to interact with many different proteins, including the insulin and IGF1 receptors, platelet-derived growth factor (PDGF) receptor-beta, Ret, Kit, Raf1 and MEK1, and Nedd4. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.


Pssm-ID: 198278  Cd Length: 108  Bit Score: 52.33  E-value: 4.15e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 211 WFHGNLSGKEAEKLILERGK-NGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRWQDKKYDV-----GGGESFGTLSELID 284
Cdd:cd10415   7 WFHGRISREESHRIIKQQGLvDGLFLLRDSQSNPKAFVLTLCHHQKIKNFQILPCEDDGQTffsldDGNTKFSDLIQLVD 86

                        90
                ....*....|.
gi 23344946 285 HYKRNPMVETC 295
Cdd:cd10415  87 FYQLNKGVLPC 97
SH2_PTK6_Brk cd10358
Src homology 2 domain found in protein-tyrosine kinase-6 (PTK6) which is also known as breast ...
 211-291 5.13e-08

Src homology 2 domain found in protein-tyrosine kinase-6 (PTK6) which is also known as breast tumor kinase (Brk); Human protein-tyrosine kinase-6 (PTK6, also known as breast tumor kinase (Brk)) is a member of the non-receptor protein-tyrosine kinase family and is expressed in two-thirds of all breast tumors. PTK6 (9). PTK6 contains a SH3 domain, a SH2 domain, and catalytic domains. For the case of the non-receptor protein-tyrosine kinases, the SH2 domain is typically involved in negative regulation of kinase activity by binding to a phosphorylated tyrosine residue near to the C terminus. The C-terminal sequence of PTK6 (PTSpYENPT where pY is phosphotyrosine) is thought to be a self-ligand for the SH2 domain. The structure of the SH2 domain resembles other SH2 domains except for a centrally located four-stranded antiparallel beta-sheet (strands betaA, betaB, betaC, and betaD). There are also differences in the loop length which might be responsible for PTK6 ligand specificity. There are two possible means of regulation of PTK6: autoinhibitory with the phosphorylation of Tyr playing a role in its negative regulation and autophosphorylation at this site, though it has been shown that PTK6 might phosphorylate signal transduction-associated proteins Sam68 and signal transducing adaptor family member 2 (STAP/BKS) in vivo. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.


Pssm-ID: 198221  Cd Length: 100  Bit Score: 51.67  E-value: 5.13e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 211 WFHGNLSGKEA-EKLILERGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIrWQDK--KYDVGGGESFGTLSELIDHYK 287
Cdd:cd10358   4 WFFGCISRSEAvRRLQAEGNATGAFLIRVSEKPSADYVLSVRDTQAVRHYKI-WRRAggRLHLNEAVSFLSLPELVNYHR 82


                ....
gi 23344946 288 RNPM 291
Cdd:cd10358  83 AQSL 86
SH2_SH2B1 cd10410
Src homology 2 (SH2) domain found in SH2B adapter proteins (SH2B1, SH2B2, SH2B3); SH2B1 (SH2-B, ...
 206-291 6.26e-08

Src homology 2 (SH2) domain found in SH2B adapter proteins (SH2B1, SH2B2, SH2B3); SH2B1 (SH2-B, PSM), like other members of the SH2B adapter protein family, contains a pleckstrin homology domain, at least one dimerization domain, and a C-terminal SH2 domain which binds to phosphorylated tyrosines in a variety of tyrosine kinases. SH2B1 and SH2B2 function in signaling pathways found downstream of growth hormone receptor and receptor tyrosine kinases, including the insulin, insulin-like growth factor-I (IGF-I), platelet-derived growth factor (PDGF), nerve growth factor, hepatocyte growth factor, and fibroblast growth factor receptors. SH2B2beta, a new isoform of SH2B2, is an endogenous inhibitor of SH2B1 and/or SH2B2 (SH2B2alpha), negatively regulating insulin signaling and/or JAK2-mediated cellular responses. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.


Pssm-ID: 198273  Cd Length: 97  Bit Score: 51.17  E-value: 6.26e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 206 LHGYTWFHGNLSGKEAEKLILERG--KNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRWQDKKYDVGGGESFGTLSELI 283
Cdd:cd10410   5 LSGYPWFHGMLSRLKAAQLVLEGGtgSHGVFLVRQSETRRGEYVLTFNFQGKAKHLRLSLNEEGQCRVQHLWFQSIFDML 84


                ....*...
gi 23344946 284 DHYKRNPM 291
Cdd:cd10410  85 EHFRVHPI 92
SH2_Tec_Bmx cd10399
Src homology 2 (SH2) domain found in Tec protein, Bmx; A member of the Tec protein tyrosine ...
 209-304 8.43e-08

Src homology 2 (SH2) domain found in Tec protein, Bmx; A member of the Tec protein tyrosine kinase Bmx is expressed in the endothelium of large arteries, fetal endocardium, adult endocardium of the left ventricle, bone marrow, lung, testis, granulocytes, myeloid cell lines, and prostate cell lines. Bmx is involved in the regulation of Rho and serum response factor (SRF). Bmx has been shown to interact with PAK1, PTK2, PTPN21, and RUFY1. Most of the Tec family members have a PH domain (Txk and the short (type 1) splice variant of Drosophila Btk29A are exceptions), a Tec homology (TH) domain, a SH3 domain, a SH2 domain, and a protein kinase catalytic domain. The TH domain consists of a Zn2+-binding Btk motif and a proline-rich region. The Btk motif is found in Tec kinases, Ras GAP, and IGBP. It is crucial for the function of Tec PH domains. It is not present in Txk and the type 1 splice form of the Drosophila homolog. The proline-rich regions are highly conserved for the most part with the exception of Bmx whose residues surrounding the PXXP motif are not conserved (TH-like) and Btk29A which is entirely unique with large numbers of glycine residues (TH-extended). Tec family members all lack a C-terminal tyrosine having an autoinhibitory function in its phosphorylated state. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.


Pssm-ID: 198262  Cd Length: 106  Bit Score: 51.11  E-value: 8.43e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 209 YTWFHGNLSGKEAEKLILERGKNGSFLVRESqSKPGDFVLSVRT----DDKVT----HVMIRWQDKKYdVGGGESFGTLS 280
Cdd:cd10399   6 YDWFAGNISRSQSEQLLRQKGKEGAFMVRNS-SQVGMYTVSLFSkavnDKKGTvkhyHVHTNAENKLY-LAENYCFDSIP 83

                        90       100
                ....*....|....*....|....
gi 23344946 281 ELIDHYKRNpmveTCGTVVHLRQP 304
Cdd:cd10399  84 KLIHYHQHN----SAGMITRLRHP 103
SH2_Src_Yes cd10366
Src homology 2 (SH2) domain found in Yes; Yes is a member of the Src non-receptor type ...
 211-286 1.28e-07

Src homology 2 (SH2) domain found in Yes; Yes is a member of the Src non-receptor type tyrosine kinase family of proteins. Yes is the cellular homolog of the Yamaguchi sarcoma virus oncogene. In humans it is encoded by the YES1 gene which maps to chromosome 18 and is in close proximity to thymidylate synthase. A corresponding Yes pseudogene has been found on chromosome 22. YES1 has been shown to interact with Janus kinase 2, CTNND1,RPL10, and Occludin. Yes1 has a unique N-terminal domain, an SH3 domain, an SH2 domain, a kinase domain and a regulatory tail, as do the other members of the family. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.


Pssm-ID: 198229  Cd Length: 101  Bit Score: 50.40  E-value: 1.28e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 211 WFHGNLSGKEAEKLILERG-KNGSFLVRESQSKPGDFVLSVR-----TDDKVTHVMIRWQDK-KYDVGGGESFGTLSELI 283
Cdd:cd10366   5 WYFGKMGRKDAERLLLNPGnQRGIFLVRESETTKGAYSLSIRdwdevRGDNVKHYKIRKLDNgGYYITTRAQFDTLQKLV 84


                ...
gi 23344946 284 DHY 286
Cdd:cd10366  85 KHY 87
SH2_SH2D4A cd10350
Src homology 2 domain found in the SH2 domain containing protein 4A (SH2D4A); SH2D4A contains ...
 211-291 1.32e-07

Src homology 2 domain found in the SH2 domain containing protein 4A (SH2D4A); SH2D4A contains a single SH2 domain. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.


Pssm-ID: 198213  Cd Length: 103  Bit Score: 50.70  E-value: 1.32e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 211 WFHGNLSGKEAEKLILERGKnGSFLVRESQSKPGdFVLSVRTDDKVTHVMIRWQDKKYDVGGGESF--GTLSELIDHYKR 288
Cdd:cd10350   9 WFHGILTLKKANELLLSTMP-GSFLIRVSEKIKG-YALSYLSEEGCKHFLIDASADSYSFLGVDQLqhATLADLVEYHKE 86


                ...
gi 23344946 289 NPM 291
Cdd:cd10350  87 EPI 89
SH2_Srm cd10360
Src homology 2 (SH2) domain found in Src-related kinase lacking C-terminal regulatory tyrosine ...
 211-286 1.36e-07

Src homology 2 (SH2) domain found in Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristoylation sites (srm); Srm is a nonreceptor protein kinase that has two SH2 domains, a SH3 domain, and a kinase domain with a tyrosine residue for autophosphorylation. However it lacks an N-terminal glycine for myristoylation and a C-terminal tyrosine which suppresses kinase activity when phosphorylated. Srm is most similar to members of the Tec family who other members include: Tec, Btk/Emb, and Itk/Tsk/Emt. However Srm differs in its N-terminal unique domain it being much smaller than in the Tec family and is closer to Src. Srm is thought to be a new family of nonreceptor tyrosine kinases that may be redundant in function. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.


Pssm-ID: 198223  Cd Length: 79  Bit Score: 49.95  E-value: 1.36e-07
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 23344946 211 WFHGNLSGKEAEKLILE-RGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMI-RWQDKKYDVGGGESFGTLSELIDHY 286
Cdd:cd10360   2 WYFSGISRTQAQQLLLSpPNEPGAFLIRPSESSLGGYSLSVRAQAKVCHYRIcMAPSGSLYLQKGRLFPGLEELLAYY 79
SH2_SH2B3 cd10412
Src homology 2 (SH2) domain found in SH2B adapter proteins (SH2B1, SH2B2, SH2B3); SH2B3 (Lnk), ...
 206-296 1.37e-07

Src homology 2 (SH2) domain found in SH2B adapter proteins (SH2B1, SH2B2, SH2B3); SH2B3 (Lnk), like other members of the SH2B adapter protein family, contains a pleckstrin homology domain, at least one dimerization domain, and a C-terminal SH2 domain which binds to phosphorylated tyrosines in a variety of tyrosine kinases. SH2B3 negatively regulates lymphopoiesis and early hematopoiesis. The lnk-deficiency results in enhanced production of B cells, and expansion as well as enhanced function of hematopoietic stem cells (HSCs), demonstrating negative regulatory functions of Sh2b3/Lnk in cytokine signaling. Sh2b3/Lnk also functions in responses controlled by cell adhesion and in crosstalk between integrin- and cytokine-mediated signaling. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.


Pssm-ID: 198275  Cd Length: 97  Bit Score: 50.28  E-value: 1.37e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 206 LHGYTWFHGNLSGKEAEKLILERG--KNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRWQDKKYDVGGGESFGTLSELI 283
Cdd:cd10412   5 LSCYPWFHGPISRVKAAQLVQLQGpdAHGVFLVRQSETRRGEYVLTFNFQGRAKHLRLSLTERGQCRVQHLHFPSVVDML 84

                        90
                ....*....|...
gi 23344946 284 DHYKRNPMVETCG 296
Cdd:cd10412  85 HHFQRSPIPLECG 97
SH2_Vav3 cd10407
Src homology 2 (SH2) domain found in the Vav3 proteins; Proto-oncogene vav is a member of the ...
 211-293 1.45e-07

Src homology 2 (SH2) domain found in the Vav3 proteins; Proto-oncogene vav is a member of the Dbl family of guanine nucleotide exchange factors (GEF) for the Rho family of GTP binding proteins. All vavs are activated by tyrosine phosphorylation leading to their activation. There are three Vav mammalian family members: Vav1 which is expressed in the hematopoietic system, and Vav2 and Vav3 are more ubiquitously expressed. Vav3 preferentially activates RhoA, RhoG and, to a lesser extent, Rac1. Alternatively spliced transcript variants encoding different isoforms have been described for this gene. VAV3 has been shown to interact with Grb2. Vav proteins are involved in several processes that require cytoskeletal reorganization, such as the formation of the immunological synapse (IS), phagocytosis, platelet aggregation, spreading, and transformation. Vavs function as guanine nucleotide exchange factors (GEFs) for the Rho/Rac family of GTPases. Vav family members have several conserved motifs/domains including: a leucine-rich region, a leucine-zipper, a calponin homology (CH) domain, an acidic domain, a Dbl-homology (DH) domain, a pleckstrin homology (PH) domain, a cysteine-rich domain, 2 SH3 domains, a proline-rich region, and a SH2 domain. Vavs are the only known Rho GEFs that have both the DH/PH motifs and SH2/SH3 domains in the same protein. The leucine-rich helix-loop-helix (HLH) domain is thought to be involved in protein heterodimerization with other HLH proteins and it may function as a negative regulator by forming inactive heterodimers. The CH domain is usually involved in the association with filamentous actin, but in Vav it controls NFAT stimulation, Ca2+ mobilization, and its transforming activity. Acidic domains are involved in protein-protein interactions and contain regulatory tyrosines. The DH domain is a GDP-GTP exchange factor on Rho/Rac GTPases. The PH domain in involved in interactions with GTP-binding proteins, lipids and/or phosphorylated serine/threonine residues. The SH3 domain is involved in localization of proteins to specific sites within the cell interacting with protein with proline-rich sequences. The SH2 domain mediates a high affinity interaction with tyrosine phosphorylated proteins. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.


Pssm-ID: 198270  Cd Length: 103  Bit Score: 50.39  E-value: 1.45e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 211 WFHGNLSGKEAEKLILERgKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRWQDKKYDVGGGESFGTLSELIDHYKRNP 290
Cdd:cd10407   7 WYAGAMERLQAETELINR-VNSTYLVRHRTKESGEYAISIKYNNEVKHIKILTRDGFFHIAENRKFKSLMELVEYYKHHS 85


                ...
gi 23344946 291 MVE 293
Cdd:cd10407  86 LKE 88
SH2_Tec_Btk cd10397
Src homology 2 (SH2) domain found in Tec protein, Bruton's tyrosine kinase (Btk); A member of ...
 205-304 4.30e-07

Src homology 2 (SH2) domain found in Tec protein, Bruton's tyrosine kinase (Btk); A member of the Tec protein tyrosine kinase Btk is expressed in bone marrow, spleen, all hematopoietic cells except T lymphocytes and plasma cells where it plays a crucial role in B cell maturation and mast cell activation. Btk has been shown to interact with GNAQ, PLCG2, protein kinase D1, B-cell linker, SH3BP5, caveolin 1, ARID3A, and GTF2I. Most of the Tec family members have a PH domain (Txk and the short (type 1) splice variant of Drosophila Btk29A are exceptions), a Tec homology (TH) domain, a SH3 domain, a SH2 domain, and a protein kinase catalytic domain. Btk is implicated in the primary immunodeficiency disease X-linked agammaglobulinemia (Bruton's agammaglobulinemia). The TH domain consists of a Zn2+-binding Btk motif and a proline-rich region. The Btk motif is found in Tec kinases, Ras GAP, and IGBP. It is crucial for the function of Tec PH domains and it's lack of presence in Txk is not surprising since it lacks a PH domain. The type 1 splice form of the Drosophila homolog also lacks both the PH domain and the Btk motif. The proline-rich regions are highly conserved for the most part with the exception of Bmx whose residues surrounding the PXXP motif are not conserved (TH-like) and Btk29A which is entirely unique with large numbers of glycine residues (TH-extended). Tec family members all lack a C-terminal tyrosine having an autoinhibitory function in its phosphorylated state. Two tyrosine phosphorylation (pY) sites have been identified in Btk: one located in the activation loop of the catalytic domain which regulates the transition between open (active) and closed (inactive) states and the other in its SH3 domain. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.


Pssm-ID: 198260 [Multi-domain]  Cd Length: 106  Bit Score: 49.06  E-value: 4.30e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 205 QLHGYTWFHGNLSGKEAEKLILERGKNGSFLVRESqSKPGDFVLSVRTDDKVT-------HVMIRWQDKKYDVGGGESFG 277
Cdd:cd10397   2 SLEMYEWYSKNMTRSQAEQLLKQEGKEGGFIVRDS-SKAGKYTVSVFAKSAGDpqgvirhYVVCSTPQSQYYLAEKHLFS 80

                        90       100
                ....*....|....*....|....*..
gi 23344946 278 TLSELIDHYKRNpmveTCGTVVHLRQP 304
Cdd:cd10397  81 TIPELINYHQHN----AAGLISRLKYP 103
SH2_SAP1a cd10400
Src homology 2 (SH2) domain found in SLAM-associated protein (SAP) 1a; The X-linked ...
 212-250 1.45e-06

Src homology 2 (SH2) domain found in SLAM-associated protein (SAP) 1a; The X-linked lymphoproliferative syndrome (XLP) gene encodes SAP (also called SH2D1A/DSHP) a protein that consists of a 5 residue N-terminus, a single SH2 domain, and a short 25 residue C-terminal tail. XLP is characterized by an extreme sensitivity to Epstein-Barr virus. Both T and natural killer (NK) cell dysfunctions have been seen in XLP patients. SAP binds the cytoplasmic tail of Signaling lymphocytic activation molecule (SLAM), 2B4, Ly-9, and CD84. SAP is believed to function as a signaling inhibitor, by blocking or regulating binding of other signaling proteins. SAP and the SAP-like protein EAT-2 recognize the sequence motif TIpYXX[VI], which is found in the cytoplasmic domains of a restricted number of T, B, and NK cell surface receptors and are proposed to be natural inhibitors or regulators of the physiological role of a small family of receptors on the surface of these cells. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.


Pssm-ID: 198263  Cd Length: 103  Bit Score: 47.53  E-value: 1.45e-06
                        10        20        30
                ....*....|....*....|....*....|....*....
gi 23344946 212 FHGNLSGKEAEKLILERGKNGSFLVRESQSKPGDFVLSV 250
Cdd:cd10400   6 YHGKISRETGEKLLLAAGLDGSYLLRDSESVPGVYCLCV 44
SH2_SOCS3 cd10384
Src homology 2 (SH2) domain found in suppressor of cytokine signaling (SOCS) proteins; SH2 ...
 200-290 1.56e-06

Src homology 2 (SH2) domain found in suppressor of cytokine signaling (SOCS) proteins; SH2 domain found in SOCS proteins. SOCS was first recognized as a group of cytokine-inducible SH2 (CIS) domain proteins comprising eight family members in human (CIS and SOCS1-SOCS7). In addition to the SH2 domain, SOCS proteins have a variable N-terminal domain and a conserved SOCS box in the C-terminal domain. SOCS proteins bind to a substrate via their SH2 domain. The prototypical members, CIS and SOCS1-SOCS3, have been shown to regulate growth hormone signaling in vitro and in a classic negative feedback response compete for binding at phosphotyrosine sites in JAK kinase and receptor pathways to displace effector proteins and target bound receptors for proteasomal degradation. Loss of SOCS activity results in excessive cytokine signaling associated with a variety of hematopoietic, autoimmune, and inflammatory diseases and certain cancers. Members (SOCS4-SOCS7) were identified by their conserved SOCS box, an adapter motif of 3 helices that associates substrate binding domains, such as the SOCS SH2 domain, ankryin, and WD40 with ubiquitin ligase components. These show limited cytokine induction. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.


Pssm-ID: 198247  Cd Length: 101  Bit Score: 47.43  E-value: 1.56e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 200 ATMRVQLHGYTWfhGNLSGKEAeKLILERGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRWQDKKY----DVGGGES 275
Cdd:cd10384   3 AVRKLQESGFYW--STVSGKEA-NLLLSAEPAGTFLIRDSSDQRHFFTLSVKTESGTKNLRIQCEGGSFslqtDPRSTQP 79

                        90
                ....*....|....*...
gi 23344946 276 ---FGTLSELIDHYKRNP 290
Cdd:cd10384  80 vprFDCVLKLVHHYMPPS 97
CDKN3-like cd14505
cyclin-dependent kinase inhibitor 3 and similar proteins; This family is composed of ...
 636-739 2.00e-06

cyclin-dependent kinase inhibitor 3 and similar proteins; This family is composed of eukaryotic cyclin-dependent kinase inhibitor 3 (CDKN3) and related archaeal and bacterial proteins. CDKN3 is also known as kinase-associated phosphatase (KAP), CDK2-associated dual-specificity phosphatase, cyclin-dependent kinase interactor 1 (CDI1), or cyclin-dependent kinase-interacting protein 2 (CIP2). It has been characterized as dual-specificity phosphatase, which function as a protein-serine/threonine phosphatase (EC 3.1.3.16) and protein-tyrosine-phosphatase (EC 3.1.3.48). It dephosphorylates CDK2 at a threonine residue in a cyclin-dependent manner, resulting in the inhibition of G1/S cell cycle progression. It also interacts with CDK1 and controls progression through mitosis by dephosphorylating CDC2. CDKN3 may also function as a tumor suppressor; its loss of function was found in a variety of cancers including glioblastoma and hepatocellular carcinoma. However, it has also been found over-expressed in many cancers such as breast, cervical, lung and prostate cancers, and may also have an oncogenic function.


Pssm-ID: 350355 [Multi-domain]  Cd Length: 163  Bit Score: 48.80  E-value: 2.00e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 636 FHYHFqvwPDHGVPADPGCVLNFLQDvntrqshLAQAGEKPGPICVHCSAGIGRTGTfiVIDMILDQivrngLDTEIDIQ 715
Cdd:cd14505  76 HHLPI---PDGGVPSDIAQWQELLEE-------LLSALENGKKVLIHCKGGLGRTGL--IAACLLLE-----LGDTLDPE 138

                        90       100
                ....*....|....*....|....
gi 23344946 716 RTIQMVRSQRSGLVQTEAQYKFVY 739
Cdd:cd14505 139 QAIAAVRALRPGAIQTPKQENFLH 162
SH2_SOCS1 cd10382
Src homology 2 (SH2) domain found in suppressor of cytokine signaling (SOCS) proteins; SH2 ...
 208-286 2.02e-06

Src homology 2 (SH2) domain found in suppressor of cytokine signaling (SOCS) proteins; SH2 domain found in SOCS proteins. SOCS was first recognized as a group of cytokine-inducible SH2 (CIS) domain proteins comprising eight family members in human (CIS and SOCS1-SOCS7). In addition to the SH2 domain, SOCS proteins have a variable N-terminal domain and a conserved SOCS box in the C-terminal domain. SOCS proteins bind to a substrate via their SH2 domain. The prototypical members, CIS and SOCS1-SOCS3, have been shown to regulate growth hormone signaling in vitro and in a classic negative feedback response compete for binding at phosphotyrosine sites in JAK kinase and receptor pathways to displace effector proteins and target bound receptors for proteasomal degradation. Loss of SOCS activity results in excessive cytokine signaling associated with a variety of hematopoietic, autoimmune, and inflammatory diseases and certain cancers. Members (SOCS4-SOCS7) were identified by their conserved SOCS box, an adapter motif of 3 helices that associates substrate binding domains, such as the SOCS SH2 domain, ankryin, and WD40 with ubiquitin ligase components. These show limited cytokine induction. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.


Pssm-ID: 198245  Cd Length: 98  Bit Score: 46.97  E-value: 2.02e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 208 GYTWfhGNLSGKEAEKLiLERGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRWQDKKYDV-GGGESFGTLSELIDHY 286
Cdd:cd10382  11 GFYW--GPLSVEEAHAK-LKREPVGTFLIRDSRQKNCFFALSVKMASGPVSIRILFKAGKFSLdGSKESFDCLFKLLEHY 87
SH2_SH2D2A cd10416
Src homology 2 domain found in the SH2 domain containing protein 2A (SH2D2A); SH2D2A contains ...
 211-291 3.09e-06

Src homology 2 domain found in the SH2 domain containing protein 2A (SH2D2A); SH2D2A contains a single SH2 domain. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.


Pssm-ID: 198279  Cd Length: 102  Bit Score: 46.57  E-value: 3.09e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 211 WFHGNLSGKEAEKLiLERGKNGSFLVRESQSKPgDFVLSVRTDDKVTHVMI-RWQDKKYDVGGGES-FGTLSELIDHYKR 288
Cdd:cd10416   9 WFHGFITRREAERL-LEPKPQGCYLVRFSESAV-TFVLTYRSRTCCRHFLLaQLRDGRHVVLGEDSaHARLQDLLLHYTA 86


                ...
gi 23344946 289 NPM 291
Cdd:cd10416  87 HPL 89
SH2_SAP1 cd10342
Src homology 2 (SH2) domain found in SLAM-associated protein (SAP)1; The X-linked ...
 211-304 4.49e-06

Src homology 2 (SH2) domain found in SLAM-associated protein (SAP)1; The X-linked lymphoproliferative syndrome (XLP) gene encodes SAP (also called SH2D1A/DSHP) a protein that consists of a 5 residue N-terminus, a single SH2 domain, and a short 25 residue C-terminal tail. XLP is characterized by an extreme sensitivity to Epstein-Barr virus. Both T and natural killer (NK) cell dysfunctions have been seen in XLP patients. SAP binds the cytoplasmic tail of Signaling lymphocytic activation molecule (SLAM), 2B4, Ly-9, and CD84. SAP is believed to function as a signaling inhibitor, by blocking or regulating binding of other signaling proteins. SAP and the SAP-like protein EAT-2 recognize the sequence motif TIpYXX[VI], which is found in the cytoplasmic domains of a restricted number of T, B, and NK cell surface receptors and are proposed to be natural inhibitors or regulators of the physiological role of a small family of receptors on the surface of these cells. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.


Pssm-ID: 198205  Cd Length: 103  Bit Score: 46.17  E-value: 4.49e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 211 WFHGNLSGKEAEKLILERGKNGSFLVRESQSKPGDFVLSVRTDDKV-THVMIRWQDKKYDVGGGES-----FGTLSELID 284
Cdd:cd10342   5 VYHGKISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLYHGYIyTYRVSQTETGSWSAETAPGvhkryFRKIKNLIS 84

                        90       100
                ....*....|....*....|
gi 23344946 285 HYKRNPMvetcGTVVHLRQP 304
Cdd:cd10342  85 AFQKPDQ----GIVIPLQYP 100
SH2_HSH2_like cd09946
Src homology 2 domain found in hematopoietic SH2 (HSH2) protein; HSH2 is thought to function ...
 211-291 5.41e-06

Src homology 2 domain found in hematopoietic SH2 (HSH2) protein; HSH2 is thought to function as an adapter protein involved in tyrosine kinase signaling. It may also be involved in regulating cytokine signaling and cytoskeletal reorganization in hematopoietic cells. HSH2 contains several putative protein-binding motifs, SH3-binding proline-rich regions, and phosphotyrosine sites, but lacks enzymatic motifs. HSH2 was found to interact with cytokine-regulated tyrosine kinase c-FES and an activated Cdc42-associated tyrosine kinase ACK1. HSH2 binds c-FES through both its C-terminal region and its N-terminal region including the SH2 domain and binds ACK1 via its N-terminal proline-rich region. Both kinases bound and tyrosine-phosphorylated HSH2 in mammalian cells. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.


Pssm-ID: 198199  Cd Length: 102  Bit Score: 46.04  E-value: 5.41e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 211 WFHGNLSGKEAEKLiLERGKNGSFLVRESQSKPGdFVLSVRTDDKVTHVMIRWQDKKYDVGGGE--SFGTLSELIDHYKR 288
Cdd:cd09946   9 WFHGAISREAAENM-LESQPLGSFLIRVSHSHVG-YTLSYKAQSSCRHFMVKLLDDGTFMIPGEkvAHTSLHALVTFHQQ 86


                ...
gi 23344946 289 NPM 291
Cdd:cd09946  87 KPI 89
SH2_SH2D4B cd10351
Src homology 2 domain found in the SH2 domain containing protein 4B (SH2D4B); SH2D4B contains ...
 211-287 9.55e-06

Src homology 2 domain found in the SH2 domain containing protein 4B (SH2D4B); SH2D4B contains a single SH2 domain. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.


Pssm-ID: 198214  Cd Length: 103  Bit Score: 45.27  E-value: 9.55e-06
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 23344946 211 WFHGNLSGKEAEKLiLERGKNGSFLVRESQSKPGdFVLSVRTDDKVTHVMIRWQDKKYDVGGGES--FGTLSELIDHYK 287
Cdd:cd10351   9 WFHGIISREEAEAL-LMNATEGSFLVRVSEKIWG-YTLSYRLQSGFKHFLVDASGDFYSFLGVDPnrHATLTDLIDFHK 85
PTP_YopH-like cd14559
YopH and related bacterial protein tyrosine phosphatases; Yersinia outer protein H (YopH) ...
 638-736 1.14e-05

YopH and related bacterial protein tyrosine phosphatases; Yersinia outer protein H (YopH) belongs to the family of classical tyrosine-specific protein tyrosine phosphatases (PTPs). PTPs (EC 3.1.3.48) catalyze the dephosphorylation of phosphotyrosine peptides. YopH is an essential virulence determinant of the pathogenic bacterium by dephosphorylating several focal adhesion proteins including p130Cas in human epithelial cells, resulting in the disruption of focal adhesions and cell detachment from the extracellular matrix. It contains an N-terminal domain that contains signals required for TTSS-mediated delivery of YopH into host cells and a C-terminal catalytic PTP domain.


Pssm-ID: 350407 [Multi-domain]  Cd Length: 227  Bit Score: 47.78  E-value: 1.14e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 638 YHFQVWPDHG-VPADpgcVLNFLQD-VN-TRQSH---LAQAGE-------KPGPIcVHCSAGIGRTGTFIVIDMILDQiv 704
Cdd:cd14559 121 VHVTNWPDHTaISSE---GLKELADlVNkSAEEKrnfYKSKGSsaindknKLLPV-IHCRAGVGRTGQLAAAMELNKS-- 194

                        90       100       110
                ....*....|....*....|....*....|...
gi 23344946 705 rnglDTEIDIQRTIQMVRSQRSG-LVQTEAQYK 736
Cdd:cd14559 195 ----PNNLSVEDIVSDMRTSRNGkMVQKDEQLD 223
SH2_SHB cd10389
Src homology 2 domain found in SH2 domain-containing adapter protein B (SHB); SHB functions in ...
 211-286 1.20e-05

Src homology 2 domain found in SH2 domain-containing adapter protein B (SHB); SHB functions in generating signaling compounds in response to tyrosine kinase activation. SHB contains proline-rich motifs, a phosphotyrosine binding (PTB) domain, tyrosine phosphorylation sites, and a SH2 domain. SHB mediates certain aspects of platelet-derived growth factor (PDGF) receptor-, fibroblast growth factor (FGF) receptor-, neural growth factor (NGF) receptor TRKA-, T cell receptor-, interleukin-2 (IL-2) receptor- and focal adhesion kinase- (FAK) signaling. SRC-like FYN-Related Kinase FRK/RAK (also named BSK/IYK or GTK) and SHB regulate apoptosis, proliferation and differentiation. SHB promotes apoptosis and is also required for proper mitogenicity, spreading and tubular morphogenesis in endothelial cells. SHB also plays a role in preventing early cavitation of embryoid bodies and reduces differentiation to cells expressing albumin, amylase, insulin and glucagon. SHB is a multifunctional protein that has difference responses in different cells under various conditions. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.


Pssm-ID: 198252  Cd Length: 97  Bit Score: 44.70  E-value: 1.20e-05
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 23344946 211 WFHGNLSGKEAEKLiLERGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRWQDKKYDVG-GGESFGTLSELIDHY 286
Cdd:cd10389   3 WYHGAISRGDAENL-LRLCKECSYLVRNSQTSKHDYSLSLKSNQGFMHMKLAKTKEKYVLGqNSPPFDSVPEVIHYY 78
SH2_SOCS2 cd10383
Src homology 2 (SH2) domain found in suppressor of cytokine signaling (SOCS) proteins; SH2 ...
 211-286 2.26e-05

Src homology 2 (SH2) domain found in suppressor of cytokine signaling (SOCS) proteins; SH2 domain found in SOCS proteins. SOCS was first recognized as a group of cytokine-inducible SH2 (CIS) domain proteins comprising eight family members in human (CIS and SOCS1-SOCS7). In addition to the SH2 domain, SOCS proteins have a variable N-terminal domain and a conserved SOCS box in the C-terminal domain. SOCS proteins bind to a substrate via their SH2 domain. The prototypical members, CIS and SOCS1-SOCS3, have been shown to regulate growth hormone signaling in vitro and in a classic negative feedback response compete for binding at phosphotyrosine sites in JAK kinase and receptor pathways to displace effector proteins and target bound receptors for proteasomal degradation. Loss of SOCS activity results in excessive cytokine signaling associated with a variety of hematopoietic, autoimmune, and inflammatory diseases and certain cancers. Members (SOCS4-SOCS7) were identified by their conserved SOCS box, an adapter motif of 3 helices that associates substrate binding domains, such as the SOCS SH2 domain, ankryin, and WD40 with ubiquitin ligase components. These show limited cytokine induction. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.


Pssm-ID: 198246  Cd Length: 103  Bit Score: 44.10  E-value: 2.26e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 211 WFHGNLSGKEAeKLILERGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRWQDKKYDVGGG-------ESFGTLSELI 283
Cdd:cd10383   9 WYWGSMTVNEA-KEKLQDAPEGTFLVRDSSHSDYLLTISVKTSAGPTNLRIEYQDGKFRLDSIicvksklKQFDSVVHLI 87


                ...
gi 23344946 284 DHY 286
Cdd:cd10383  88 EYY 90
SH2_SHE cd10391
Src homology 2 domain found in SH2 domain-containing adapter protein E (SHE); SHE is expressed ...
 211-286 2.77e-05

Src homology 2 domain found in SH2 domain-containing adapter protein E (SHE); SHE is expressed in heart, lung, brain, and skeletal muscle. SHE contains two pTry protein binding domains, protein interaction domain (PID) and a SH2 domain, followed by a glycine-proline rich region, all of which are N-terminal to the phosphotyrosine binding (PTB) domain. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.


Pssm-ID: 198254  Cd Length: 98  Bit Score: 43.79  E-value: 2.77e-05
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 23344946 211 WFHGNLSGKEAEKLiLERGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMI-RWQDKKYDVGGGES-FGTLSELIDHY 286
Cdd:cd10391   3 WYHGSISRAEAESR-LQPCKEASYLVRNSESGNSKYSIALKTSQGCVHIIVaQTKDNKYTLNQTSAvFDSIPEVVHYY 79
SH2_ShkA_ShkC cd10356
Src homology 2 (SH2) domain found in SH2 domain-bearing protein kinases A and C (ShkA and ShkC) ...
 211-270 6.21e-05

Src homology 2 (SH2) domain found in SH2 domain-bearing protein kinases A and C (ShkA and ShkC); SH2-bearing genes cloned from Dictyostelium include two transcription factors, STATa and STATc, and a signaling factor, SHK1 (shkA). A database search of the Dictyostelium discoideum genome revealed two additional putative STAT sequences, dd-STATb and dd-STATd, and four additional putative SHK genes, dd-SHK2 (shkB), dd-SHK3 (shkC), dd-SHK4 (shkD), and dd-SHK5 (shkE). This model contains members of shkA and shkC. All of the SHK members are most closely related to the protein kinases found in plants. However these kinases in plants are not conjugated to any SH2 or SH2-like sequences. Alignment data indicates that the SHK SH2 domains carry some features of the STAT SH2 domains in Dictyostelium. When STATc's linker domain was used for a BLAST search, the sequence between the protein kinase domain and the SH2 domain (the linker) of SHK was recovered, suggesting a close relationship among these molecules within this region. SHK's linker domain is predicted to contain an alpha-helix which is indeed homologous to that of STAT. Based on the phylogenetic alignment, SH2 domains can be grouped into two categories, STAT-type and Src-type. SHK family members are in between, but are closer to the STAT-type which indicates a close relationship between SHK and STAT families in their SH2 domains and further supports the notion that SHKs linker-SH2 domain evolved from STAT or STATL (STAT-like Linker-SH2) domain found in plants. In SHK, STAT, and SPT6, the linker-SH2 domains all reside exclusively in the C-terminal regions. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.


Pssm-ID: 198219  Cd Length: 113  Bit Score: 43.36  E-value: 6.21e-05
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 23344946 211 WFHGNLSGKEAEKLiLERGKNGSFLVRESQSKPGDFVLS-VRTDDKVTHVMIRWQDKKYDV 270
Cdd:cd10356  12 WFHGDISTSESENR-LNGKPEGTFLVRFSTSEPGAYTISkVSKNGGISHQRIHRPGGKFQV 71
PTP-IVa cd14500
protein tyrosine phosphatase type IVA family; Protein tyrosine phosphatases type IVA (PTP-IVa), ...
 643-727 1.22e-04

protein tyrosine phosphatase type IVA family; Protein tyrosine phosphatases type IVA (PTP-IVa), also known as protein-tyrosine phosphatases of regenerating liver (PRLs) constitute a family of small, prenylated phosphatases that are the most oncogenic of all PTPs. They stimulate progression from G1 into S phase during mitosis and enhances cell proliferation, cell motility and invasive activity, and promotes cancer metastasis. They associate with magnesium transporters of the cyclin M (CNNM) family, which results in increased intracellular magnesium levels that promote oncogenic transformation. Vertebrates contain three members: PRL-1, PRL-2, and PRL-3.


Pssm-ID: 350350 [Multi-domain]  Cd Length: 156  Bit Score: 43.36  E-value: 1.22e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 643 WP-DHGVPADPGCVLNFLQDVNTRqshLAQAGEKPGPICVHCSAGIGRTGTFIVIDMILDqivrnGLDTEidiqRTIQMV 721
Cdd:cd14500  64 WPfDDGSPPPDDVVDDWLDLLKTR---FKEEGKPGACIAVHCVAGLGRAPVLVAIALIEL-----GMKPE----DAVEFI 131


                ....*.
gi 23344946 722 RSQRSG 727
Cdd:cd14500 132 RKKRRG 137
SH2_SOCS6 cd10387
Src homology 2 (SH2) domain found in suppressor of cytokine signaling (SOCS) proteins; SH2 ...
 205-285 1.48e-04

Src homology 2 (SH2) domain found in suppressor of cytokine signaling (SOCS) proteins; SH2 domain found in SOCS proteins. SOCS was first recognized as a group of cytokine-inducible SH2 (CIS) domain proteins comprising eight family members in human (CIS and SOCS1-SOCS7). In addition to the SH2 domain, SOCS proteins have a variable N-terminal domain and a conserved SOCS box in the C-terminal domain. SOCS proteins bind to a substrate via their SH2 domain. The prototypical members, CIS and SOCS1-SOCS3, have been shown to regulate growth hormone signaling in vitro and in a classic negative feedback response compete for binding at phosphotyrosine sites in JAK kinase and receptor pathways to displace effector proteins and target bound receptors for proteasomal degradation. Loss of SOCS activity results in excessive cytokine signaling associated with a variety of hematopoietic, autoimmune, and inflammatory diseases and certain cancers. Members (SOCS4-SOCS7) were identified by their conserved SOCS box, an adapter motif of 3 helices that associates substrate binding domains, such as the SOCS SH2 domain, ankryin, and WD40 with ubiquitin ligase components. These show limited cytokine induction. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.


Pssm-ID: 198250  Cd Length: 100  Bit Score: 41.75  E-value: 1.48e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 205 QLHGYTWFHGNLSGKEAE-KLILErgKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIRWQDKK---YDVGGGESFGTLS 280
Cdd:cd10387   6 KLAKQGWYWGPITRWEAEgKLANV--PDGSFLVRDSSDDRYLLSLSFRSHGKTLHTRIEHSNGRfsfYEQPDVEGHTSIV 83


                ....*
gi 23344946 281 ELIDH 285
Cdd:cd10387  84 DLIEH 88
SH2_C-SH2_Zap70_Syk_like cd10345
C-terminal Src homology 2 (SH2) domain found in Zeta-chain-associated protein kinase 70 ...
 211-287 3.69e-04

C-terminal Src homology 2 (SH2) domain found in Zeta-chain-associated protein kinase 70 (ZAP-70) and Spleen tyrosine kinase (Syk) proteins; ZAP-70 and Syk comprise a family of hematopoietic cell specific protein tyrosine kinases (PTKs) that are required for antigen and antibody receptor function. ZAP-70 is expressed in T and natural killer (NK) cells and Syk is expressed in B cells, mast cells, polymorphonuclear leukocytes, platelets, macrophages, and immature T cells. They are required for the proper development of T and B cells, immune receptors, and activating NK cells. They consist of two N-terminal Src homology 2 (SH2) domains and a C-terminal kinase domain separated from the SH2 domains by a linker or hinge region. Phosphorylation of both tyrosine residues within the Immunoreceptor Tyrosine-based Activation Motifs (ITAM; consensus sequence Yxx[LI]x(7,8)Yxx[LI]) by the Src-family PTKs is required for efficient interaction of ZAP-70 and Syk with the receptor subunits and for receptor function. ZAP-70 forms two phosphotyrosine binding pockets, one of which is shared by both SH2 domains. In Syk the two SH2 domains do not form such a phosphotyrosine-binding site. The SH2 domains here are believed to function independently. In addition, the two SH2 domains of Syk display flexibility in their relative orientation, allowing Syk to accommodate a greater variety of spacing sequences between the ITAM phosphotyrosines and singly phosphorylated non-classical ITAM ligands. This model contains the C-terminus SH2 domains of both Syk and Zap70. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.


Pssm-ID: 198208  Cd Length: 95  Bit Score: 40.44  E-value: 3.69e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 211 WFHGNLSGKEAEKLILERGK-NGSFLVRESQSKpGDFVLSVRTDDKVTHVMIRwQDK--KYDVGGGESFGTLSELIDHYK 287
Cdd:cd10345   2 WFHGKISREESEQIVLIGSKtNGKFLIRARDNN-GSYALCLLHEGKVLHYRID-KDKtgKLSIPEGKKFDTLWQLVEHYS 79
SH2_Tensin_like cd09927
Src homology 2 domain found in Tensin-like proteins; SH2 domain found in Tensin-like proteins. ...
 211-302 8.67e-04

Src homology 2 domain found in Tensin-like proteins; SH2 domain found in Tensin-like proteins. The Tensins are a family of intracellular proteins that interact with receptor tyrosine kinases (RTKs), integrins, and actin. They are thought act as signaling bridges between the extracellular space and the cytoskeleton. There are four homologues: Tensin1, Tensin2 (TENC1, C1-TEN), Tensin3 and Tensin4 (cten), all of which contain a C-terminal tandem SH2-PTB domain pairing, as well as actin-binding regions that may localize them to focal adhesions. The isoforms of Tensin2 and Tensin3 contain N-terminal C1 domains, which are atypical and not expected to bind to phorbol esters. Tensins 1-3 contain a phosphatase (PTPase) and C2 domain pairing which resembles PTEN (phosphatase and tensin homologue deleted on chromosome 10) protein. PTEN is a lipid phosphatase that dephosphorylates phosphatidylinositol 3,4,5-trisphosphate (PtdIns(3,4,5)P3) to yield phosphatidylinositol 4,5-bisphosphate (PtdIns(4,5)P2). As PtdIns(3,4,5)P3 is the product of phosphatidylinositol 3-kinase (PI3K) activity, PTEN is therefore a key negative regulator of the PI3K pathway. Because of their PTEN-like domains, the Tensins may also possess phosphoinositide-binding or phosphatase capabilities. However, only Tensin2 and Tensin3 have the potential to be phosphatases since only their PTPase domains contain a cysteine residue that is essential for catalytic activity. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.


Pssm-ID: 198181 [Multi-domain]  Cd Length: 116  Bit Score: 40.10  E-value: 8.67e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 211 WFHGNLSGKEAEKLiLERGKNGSFLVRESQSKPGDFVLSVRTDDKVTHVMIrwQDKKYDVGggesfgtlSELIDHYkrnp 290
Cdd:cd09927   5 WYKPNISRDQAIAL-LKDKPPGTFLVRDSTTYKGAYGLAVKVATPPPGVNP--FEAKGDPE--------SELVRHF---- 69

                        90
                ....*....|..
gi 23344946 291 MVETCGTVVHLR 302
Cdd:cd09927  70 LIEPSPKGVKLK 81
CDC14_C cd14499
C-terminal dual-specificity phosphatase domain of CDC14 family proteins; The cell division ...
 644-694 1.57e-03

C-terminal dual-specificity phosphatase domain of CDC14 family proteins; The cell division control protein 14 (CDC14) family is highly conserved in all eukaryotes, although the roles of its members seem to have diverged during evolution. Yeast Cdc14, the best characterized member of this family, is a dual-specificity phosphatase that plays key roles in cell cycle control. It preferentially dephosphorylates cyclin-dependent kinase (CDK) targets, which makes it the main antagonist of CDK in the cell. Cdc14 functions at the end of mitosis and it triggers the events that completely eliminates the activity of CDK and other mitotic kinases. It is also involved in coordinating the nuclear division cycle with cytokinesis through the cytokinesis checkpoint, and in chromosome segregation. Cdc14 phosphatases also function in DNA replication, DNA damage checkpoint, and DNA repair. Vertebrates may contain more than one Cdc14 homolog; humans have three (CDC14A, CDC14B, and CDC14C). CDC14 family proteins contain a highly conserved N-terminal pseudophosphatase domain that contributes to substrate specificity and a C-terminal catalytic dual-specificity phosphatase domain with the PTP signature motif.


Pssm-ID: 350349 [Multi-domain]  Cd Length: 174  Bit Score: 40.51  E-value: 1.57e-03
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|.
gi 23344946 644 PDHGVPADpGCVLNFLQDVNTRqshlaqagekPGPICVHCSAGIGRTGTFI 694
Cdd:cd14499  88 PDGSTPSD-DIVKKFLDICENE----------KGAIAVHCKAGLGRTGTLI 127
TpbA-like cd14529
bacterial protein tyrosine and dual-specificity phosphatases related to Pseudomonas aeruginosa ...
 598-693 3.85e-03

bacterial protein tyrosine and dual-specificity phosphatases related to Pseudomonas aeruginosa TpbA; This subfamily contains bacterial protein tyrosine phosphatases (PTPs) and dual-specificity phosphatases (DUSPs) related to Pseudomonas aeruginosa TpbA, a DUSP that negatively regulates biofilm formation by converting extracellular quorum sensing signals and to Mycobacterium tuberculosis PtpB, a PTP virulence factor that attenuates host immune defenses by interfering with signal transduction pathways in macrophages. PTPs (EC 3.1.3.48) catalyze the dephosphorylation of phosphotyrosine peptides, while DUSPs function as protein-serine/threonine phosphatases (EC 3.1.3.16) and PTPs.


Pssm-ID: 350378 [Multi-domain]  Cd Length: 158  Bit Score: 38.89  E-value: 3.85e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 598 RSEQFGHARIQCVSE--NSTSDYTLREFL-VSWRDQPARRIFHYHFQVWPDHGVPADPGCVLNFLqdvntrqsHLAQAGE 674
Cdd:cd14529  16 RSAQLSPDEDRALLKklGIKTVIDLRGADeRAASEEAAAKIDGVKYVNLPLSATRPTESDVQSFL--------LIMDLKL 87

                        90
                ....*....|....*....
gi 23344946 675 KPGPICVHCSAGIGRTGTF 693
Cdd:cd14529  88 APGPVLIHCKHGKDRTGLV 106
PTP_PTEN-like cd14497
protein tyrosine phosphatase-like domain of phosphatase and tensin homolog and similar ...
 603-695 5.67e-03

protein tyrosine phosphatase-like domain of phosphatase and tensin homolog and similar proteins; Phosphatase and tensin homolog (PTEN) is a tumor suppressor that acts as a dual-specificity protein phosphatase and as a lipid phosphatase. It dephosphorylates phosphoinositide trisphosphate. In addition to PTEN, this family includes tensins, voltage-sensitive phosphatases (VSPs), and auxilins. They all contain a protein tyrosine phosphatase-like domain although not all are active phosphatases. Tensins are intracellular proteins that act as links between the extracellular matrix and the cytoskeleton, and thereby mediate signaling for cell shape and motility, and they may or may not have phosphatase activity. VSPs are phosphoinositide phosphatases with substrates that include phosphatidylinositol-4,5-diphosphate and phosphatidylinositol-3,4,5-trisphosphate. Auxilins are J domain-containing proteins that facilitate Hsc70-mediated dissociation of clathrin from clathrin-coated vesicles, and they do not exhibit phosphatase activity.


Pssm-ID: 350347 [Multi-domain]  Cd Length: 160  Bit Score: 38.72  E-value: 5.67e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23344946 603 GHARIQCVSENSTSDYTLREFLVSWRDqparrifhyhfqvWPDHGVPAdpgcvLNFLQD-VNTRQSHLAQagekpGP--- 678
Cdd:cd14497  41 DHYMIFNLSEEEYDDDSKFEGRVLHYG-------------FPDHHPPP-----LGLLLEiVDDIDSWLSE-----DPnnv 97

                        90
                ....*....|....*..
gi 23344946 679 ICVHCSAGIGRTGTFIV 695
Cdd:cd14497  98 AVVHCKAGKGRTGTVIC 114
SH2_ShkD_ShkE cd10357
Src homology 2 (SH2) domain found in SH2 domain-bearing protein kinases D and E (ShkD and ShkE) ...
 211-265 7.56e-03

Src homology 2 (SH2) domain found in SH2 domain-bearing protein kinases D and E (ShkD and ShkE); SH2-bearing genes cloned from Dictyostelium include two transcription factors, STATa and STATc, and a signaling factor, SHK1 (shkA). A database search of the Dictyostelium discoideum genome revealed two additional putative STAT sequences, dd-STATb and dd-STATd, and four additional putative SHK genes, dd-SHK2 (shkB), dd-SHK3 (shkC), dd-SHK4 (shkD), and dd-SHK5 (shkE). This model contains members of shkD and shkE. All of the SHK members are most closely related to the protein kinases found in plants. However these kinases in plants are not conjugated to any SH2 or SH2-like sequences. Alignment data indicates that the SHK SH2 domains carry some features of the STAT SH2 domains in Dictyostelium. When STATc's linker domain was used for a BLAST search, the sequence between the protein kinase domain and the SH2 domain (the linker) of SHK was recovered, suggesting a close relationship among these molecules within this region. SHK's linker domain is predicted to contain an alpha-helix which is indeed homologous to that of STAT. Based on the phylogenetic alignment, SH2 domains can be grouped into two categories, STAT-type and Src-type. SHK family members are in between, but are closer to the STAT-type which indicates a close relationship between SHK and STAT families in their SH2 domains and further supports the notion that SHKs linker-SH2 domain evolved from STAT or STATL (STAT-like Linker-SH2) domain found in plants. In SHK, STAT, and SPT6, the linker-SH2 domains all reside exclusively in the C-terminal regions. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.


Pssm-ID: 198220  Cd Length: 87  Bit Score: 36.72  E-value: 7.56e-03
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*..
gi 23344946 211 WFHGNLSGKEAEKLILERgKNGSFLVRESQSKPGD--FVLSVRTDDKVTHVMIRWQD 265
Cdd:cd10357  12 WFHGDISRDEAEKRLRGR-PEGTFLIRLSSTDPKKtpFTISKKKKSKPVHKRISRID 67
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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