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Conserved domains on  [gi|23477283|gb|AAN34627|]
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response regulator GacA, partial [Pseudomonas fluorescens Q2-87]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK09483 super family cl35841
response regulator; Provisional
 1-135 5.86e-71

response regulator; Provisional


The actual alignment was detected with superfamily member PRK09483:

Pssm-ID: 236538 [Multi-domain]  Cd Length: 217  Bit Score: 211.89  E-value: 5.86e-71
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23477283    1 LEATRKLLRSHPDIKVVAVTVCEEDPFPTRLLQASAAGYLTKGAGLNEMVQAIRLVFAGQRYISPQIAQQLAIKSFQPTN 80
Cdd:PRK09483  63 LEATRKILRYTPDVKIIMLTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVHSGQRYIASDIAQQMALSQIEPAT 142

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 23477283   81 DSPFDALSEREIQIALMIVGCQKVQIISDKLCLSPKTVNTYRYRIFEKLSITSDV 135
Cdd:PRK09483 143 ENPFASLSERELQIMLMITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNISGDV 197
 
Name Accession Description Interval E-value
PRK09483 PRK09483
response regulator; Provisional
 1-135 5.86e-71

response regulator; Provisional


Pssm-ID: 236538 [Multi-domain]  Cd Length: 217  Bit Score: 211.89  E-value: 5.86e-71
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23477283    1 LEATRKLLRSHPDIKVVAVTVCEEDPFPTRLLQASAAGYLTKGAGLNEMVQAIRLVFAGQRYISPQIAQQLAIKSFQPTN 80
Cdd:PRK09483  63 LEATRKILRYTPDVKIIMLTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVHSGQRYIASDIAQQMALSQIEPAT 142

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 23477283   81 DSPFDALSEREIQIALMIVGCQKVQIISDKLCLSPKTVNTYRYRIFEKLSITSDV 135
Cdd:PRK09483 143 ENPFASLSERELQIMLMITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNISGDV 197
REC_NarL-like cd17535
phosphoacceptor receiver (REC) domain of NarL (Nitrate/Nitrite response regulator L) family ...
 1-58 2.59e-15

phosphoacceptor receiver (REC) domain of NarL (Nitrate/Nitrite response regulator L) family response regulators; The NarL family is one of the more abundant families of DNA-binding response regulators (RRs). Members of the NarL family contain a REC domain and a helix-turn-helix (HTH) DNA-binding output domain, with a majority of members containing a LuxR-type HTH domain. They function as transcriptional regulators. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.


Pssm-ID: 381090 [Multi-domain]  Cd Length: 117  Bit Score: 66.77  E-value: 2.59e-15
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*...
gi 23477283   1 LEATRKLLRSHPDIKVVAVTVCEEDPFPTRLLQASAAGYLTKGAGLNEMVQAIRLVFA 58
Cdd:cd17535  60 IEALRRLRRRYPDLKVIVLTAHDDPEYVLRALKAGAAGYLLKDSSPEELIEAIRAVAA 117
HTH_LUXR smart00421
helix_turn_helix, Lux Regulon; lux regulon (activates the bioluminescence operon
 84-135 6.13e-14

helix_turn_helix, Lux Regulon; lux regulon (activates the bioluminescence operon


Pssm-ID: 197715 [Multi-domain]  Cd Length: 58  Bit Score: 61.77  E-value: 6.13e-14
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|..
gi 23477283     84 FDALSEREIQIALMIVGCQKVQIISDKLCLSPKTVNTYRYRIFEKLSITSDV 135
Cdd:smart00421   1 LASLTPREREVLRLLAEGLTNKEIAERLGISEKTVKTHLSNIMRKLGVRSRT 52
CitB COG2197
DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains [Signal ...
 87-135 1.31e-10

DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains [Signal transduction mechanisms, Transcription];


Pssm-ID: 441799 [Multi-domain]  Cd Length: 131  Bit Score: 54.90  E-value: 1.31e-10
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*....
gi 23477283  87 LSEREIQIALMIVGCQKVQIISDKLCLSPKTVNTYRYRIFEKLSITSDV 135
Cdd:COG2197  70 LTPREREVLRLLAEGLSNKEIAERLGISERTVKTHVSNILRKLGVRNRT 118
GerE pfam00196
Bacterial regulatory proteins, luxR family;
85-135 8.65e-10

Bacterial regulatory proteins, luxR family;


Pssm-ID: 425517 [Multi-domain]  Cd Length: 57  Bit Score: 51.05  E-value: 8.65e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 23477283    85 DALSEREIQIALMIVGCQKVQIISDKLCLSPKTVNTYRYRIFEKLSITSDV 135
Cdd:pfam00196   1 DSLSPREREVLRWLAAGKSNKEIADELGISEKTVKVHRSNIMRKLNVHSRV 51
 
Name Accession Description Interval E-value
PRK09483 PRK09483
response regulator; Provisional
 1-135 5.86e-71

response regulator; Provisional


Pssm-ID: 236538 [Multi-domain]  Cd Length: 217  Bit Score: 211.89  E-value: 5.86e-71
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23477283    1 LEATRKLLRSHPDIKVVAVTVCEEDPFPTRLLQASAAGYLTKGAGLNEMVQAIRLVFAGQRYISPQIAQQLAIKSFQPTN 80
Cdd:PRK09483  63 LEATRKILRYTPDVKIIMLTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVHSGQRYIASDIAQQMALSQIEPAT 142

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 23477283   81 DSPFDALSEREIQIALMIVGCQKVQIISDKLCLSPKTVNTYRYRIFEKLSITSDV 135
Cdd:PRK09483 143 ENPFASLSERELQIMLMITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNISGDV 197
PRK10360 PRK10360
transcriptional regulator UhpA;
6-135 2.68e-17

transcriptional regulator UhpA;


Pssm-ID: 182408 [Multi-domain]  Cd Length: 196  Bit Score: 74.24  E-value: 2.68e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23477283    6 KLLRSHPD-IKVVAVTVCEEDPFPTRLLQASAAGYLTKGAGLNEMVQAIRLVFAGQRYISPQIAQQLAIKSFQPtndspf 84
Cdd:PRK10360  64 ELLSQLPKgMATIMLSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATGGCYLTPDIAIKLASGRQDP------ 137

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 23477283   85 daLSEREIQIALMIVGCQKVQIISDKLCLSPKTVNTYRYRIFEKLSITSDV 135
Cdd:PRK10360 138 --LTKRERQVAEKLAQGMAVKEIAAELGLSPKTVHVHRANLMEKLGVSNDV 186
REC_NarL-like cd17535
phosphoacceptor receiver (REC) domain of NarL (Nitrate/Nitrite response regulator L) family ...
 1-58 2.59e-15

phosphoacceptor receiver (REC) domain of NarL (Nitrate/Nitrite response regulator L) family response regulators; The NarL family is one of the more abundant families of DNA-binding response regulators (RRs). Members of the NarL family contain a REC domain and a helix-turn-helix (HTH) DNA-binding output domain, with a majority of members containing a LuxR-type HTH domain. They function as transcriptional regulators. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.


Pssm-ID: 381090 [Multi-domain]  Cd Length: 117  Bit Score: 66.77  E-value: 2.59e-15
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*...
gi 23477283   1 LEATRKLLRSHPDIKVVAVTVCEEDPFPTRLLQASAAGYLTKGAGLNEMVQAIRLVFA 58
Cdd:cd17535  60 IEALRRLRRRYPDLKVIVLTAHDDPEYVLRALKAGAAGYLLKDSSPEELIEAIRAVAA 117
PRK15369 PRK15369
two component system response regulator;
1-129 2.88e-15

two component system response regulator;


Pssm-ID: 185267 [Multi-domain]  Cd Length: 211  Bit Score: 68.95  E-value: 2.88e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23477283    1 LEATRKLLRSHPDIKVVAVTVCEEDPFPTRLLQASAAGYLTKGAGLNEMVQAIRLVFAGQRYISPQIAQQLAIKSFQPTN 80
Cdd:PRK15369  65 LDVIPQLHQRWPAMNILVLTARQEEHMASRTLAAGALGYVLKKSPQQILLAAIQTVAVGKRYIDPALNREAILALLNADD 144

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 23477283   81 DSPfDALSEREIQIALMIVGCQKVQIISDKLCLSPKTVNTYRYRIFEKL 129
Cdd:PRK15369 145 TNP-PLLTPRERQILKLITEGYTNRDIAEQLSISIKTVETHRLNMMRKL 192
HTH_LUXR smart00421
helix_turn_helix, Lux Regulon; lux regulon (activates the bioluminescence operon
 84-135 6.13e-14

helix_turn_helix, Lux Regulon; lux regulon (activates the bioluminescence operon


Pssm-ID: 197715 [Multi-domain]  Cd Length: 58  Bit Score: 61.77  E-value: 6.13e-14
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|..
gi 23477283     84 FDALSEREIQIALMIVGCQKVQIISDKLCLSPKTVNTYRYRIFEKLSITSDV 135
Cdd:smart00421   1 LASLTPREREVLRLLAEGLTNKEIAERLGISEKTVKTHLSNIMRKLGVRSRT 52
CitB COG2197
DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains [Signal ...
 87-135 1.31e-10

DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains [Signal transduction mechanisms, Transcription];


Pssm-ID: 441799 [Multi-domain]  Cd Length: 131  Bit Score: 54.90  E-value: 1.31e-10
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*....
gi 23477283  87 LSEREIQIALMIVGCQKVQIISDKLCLSPKTVNTYRYRIFEKLSITSDV 135
Cdd:COG2197  70 LTPREREVLRLLAEGLSNKEIAERLGISERTVKTHVSNILRKLGVRNRT 118
GerE pfam00196
Bacterial regulatory proteins, luxR family;
85-135 8.65e-10

Bacterial regulatory proteins, luxR family;


Pssm-ID: 425517 [Multi-domain]  Cd Length: 57  Bit Score: 51.05  E-value: 8.65e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 23477283    85 DALSEREIQIALMIVGCQKVQIISDKLCLSPKTVNTYRYRIFEKLSITSDV 135
Cdd:pfam00196   1 DSLSPREREVLRWLAAGKSNKEIADELGISEKTVKVHRSNIMRKLNVHSRV 51
PRK10651 PRK10651
transcriptional regulator NarL; Provisional
 1-135 8.15e-09

transcriptional regulator NarL; Provisional


Pssm-ID: 182619 [Multi-domain]  Cd Length: 216  Bit Score: 51.57  E-value: 8.15e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23477283    1 LEATRKLLRSHPDIKVVAVTVCEEDPFPTRLLQASAAGYLTKGAGLNEMVQAIRLVFAGQRYISPQIAQQLA--IKSFQP 78
Cdd:PRK10651  68 LETLDKLREKSLSGRIVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALQQAAAGEMVLSEALTPVLAasLRANRA 147

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 23477283   79 TNDSPFDALSEREIQIALMIVGCQKVQIISDKLCLSPKTVNTYRYRIFEKLSITSDV 135
Cdd:PRK10651 148 TTERDVNQLTPRERDILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKMKLKSRV 204
LuxR_C_like cd06170
C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix ...
 87-135 2.29e-08

C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many are active as homodimers. Many are two domain proteins in which the DNA binding property of the C-terminal DNA binding domain is modulated by modifications of the N-terminal domain. For example in the case of Lux R which participates in the regulation of gene expression in response to fluctuations in cell-population density (quorum-sensing), a signaling molecule, the pheromone Acyl HSL (N-acyl derivatives of homoserine lactone), binds to the N-terminal domain and leads to LuxR dimerization. For others phophorylation of the N-terminal domain leads to multimerization, for example Escherichia coli NarL and Sinorhizobium melilot FixJ. NarL controls gene expression of many respiratory-related operons when environmental nitrate or nitrite is present under anerobic conditions. FixJ is involved in the transcriptional activation of nitrogen fixation genes. The group also includes small proteins which lack an N-terminal signaling domain, such as Bacillus subtilis GerE. GerE is dimeric and acts in conjunction with sigmaK as an activator or a repressor modulating the expression of various genes in particular those encoding the spore-coat. These LuxR family regulators may share a similar organization of their target binding sites. For example the LuxR dimer binds the lux box, a 20bp inverted repeat, GerE dimers bind two 12bp consensus sequences in inverted orientation having the central four bases overlap, and the NarL dimer binds two 7bp inverted repeats separated by 2 bp.


Pssm-ID: 99777 [Multi-domain]  Cd Length: 57  Bit Score: 47.53  E-value: 2.29e-08
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*....
gi 23477283  87 LSEREIQIALMIVGCQKVQIISDKLCLSPKTVNTYRYRIFEKLSITSDV 135
Cdd:cd06170   1 LTPREREVLRLLAEGKTNKEIADILGISEKTVKTHLRNIMRKLGVKSRT 49
CsgD COG2771
DNA-binding transcriptional regulator, CsgD family [Transcription];
83-133 3.78e-08

DNA-binding transcriptional regulator, CsgD family [Transcription];


Pssm-ID: 442052 [Multi-domain]  Cd Length: 188  Bit Score: 49.75  E-value: 3.78e-08
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|.
gi 23477283  83 PFDALSEREIQIALMIVGCQKVQIISDKLCLSPKTVNTYRYRIFEKLSITS 133
Cdd:COG2771 124 RAPGLTPREREVLRLLAEGLTLKEIARILGISERTVRTHLKRIYRKLGVSS 174
FixJ COG4566
DNA-binding response regulator, FixJ family, consists of REC and HTH domains [Signal ...
 1-133 7.14e-08

DNA-binding response regulator, FixJ family, consists of REC and HTH domains [Signal transduction mechanisms, Transcription];


Pssm-ID: 443623 [Multi-domain]  Cd Length: 196  Bit Score: 48.94  E-value: 7.14e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23477283   1 LEATRKLLRSHPDIKVVAVT----VceedpfPT--RLLQASAAGYLTKGAGLNEMVQAIRLVFAGQRYISPQIAQQLAIK 74
Cdd:COG4566  59 LELQEELAARGSPLPVIFLTghgdV------PMavRAMKAGAVDFLEKPFDDQALLDAVRRALARDRARRAERARRAELR 132

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 23477283  75 SFqptndspFDALSEREIQIALMIV-GCQ-KVqiISDKLCLSPKTVNTYRYRIFEKLSITS 133
Cdd:COG4566 133 AR-------LASLTPREREVLDLVVaGLSnKQ--IARELGISPRTVEVHRANVMEKLGARS 184
PRK09935 PRK09935
fimbriae biosynthesis transcriptional regulator FimZ;
13-135 1.27e-07

fimbriae biosynthesis transcriptional regulator FimZ;


Pssm-ID: 182154 [Multi-domain]  Cd Length: 210  Bit Score: 48.33  E-value: 1.27e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23477283   13 DIKVVAVTVCEEDPFPTRLLQASAAGYLTKGAGLNEMVQAIRLVFAGQRYISPQIAQqlAIKSFQPTNDSPFD-ALSERE 91
Cdd:PRK09935  77 TVKVLFLSSKSECFYAGRAIQAGANGFVSKCNDQNDIFHAVQMILSGYTFFPSETLN--YIKSNKCSTNSSTDtVLSNRE 154

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 23477283   92 IQIALMIVGCQKVQIISDKLCLSPKTVNTYRYRIFEKLSITSDV 135
Cdd:PRK09935 155 VTILRYLVSGLSNKEIADQLLLSNKTVSAHKSNIYGKLGLHSIV 198
PRK10403 PRK10403
nitrate/nitrite response regulator protein NarP;
1-135 5.33e-06

nitrate/nitrite response regulator protein NarP;


Pssm-ID: 182431 [Multi-domain]  Cd Length: 215  Bit Score: 43.69  E-value: 5.33e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23477283    1 LEATRKLLRSHPDIKVVAVTVCEEDPFPTRLLQASAAGYLTKGAGLNEMVQAIRLVFAGQRYISPQIAQQLAIKSFQPTN 80
Cdd:PRK10403  68 LDTLNALRRDGVTAQIIILTVSDASSDVFALIDAGADGYLLKDSDPEVLLEAIRAGAKGSKVFSERVNQYLREREMFGAE 147

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 23477283   81 DSPFDALSEREIQIALMIV-GCQKVQIISdKLCLSPKTVNTYRYRIFEKLSITSDV 135
Cdd:PRK10403 148 EDPFSVLTERELDVLHELAqGLSNKQIAS-VLNISEQTVKVHIRNLLRKLNVRSRV 202
PRK09958 PRK09958
acid-sensing system DNA-binding response regulator EvgA;
30-133 6.23e-06

acid-sensing system DNA-binding response regulator EvgA;


Pssm-ID: 182168 [Multi-domain]  Cd Length: 204  Bit Score: 43.73  E-value: 6.23e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23477283   30 RLLQASAAGYLTKGAGLNEMVQAIRLVFAGQRYIsPQIAQQLAIKSFqpTNDSPFDALSEREIQIALMIVGCQKVQIISD 109
Cdd:PRK09958  90 HCADAGANGFVSKKEGMNNIIAAIEAAKNGYCYF-PFSLNRFVGSLT--SDQQKLDSLSKQEISVMRYILDGKDNNDIAE 166

                         90       100
                 ....*....|....*....|....
gi 23477283  110 KLCLSPKTVNTYRYRIFEKLSITS 133
Cdd:PRK09958 167 KMFISNKTVSTYKSRLMEKLECKS 190
GerE COG5905
Spore transcriptional regulator GerE (stand-alone HTH domain) [Cell cycle control, cell ...
 82-133 9.96e-05

Spore transcriptional regulator GerE (stand-alone HTH domain) [Cell cycle control, cell division, chromosome partitioning, Transcription];


Pssm-ID: 444607 [Multi-domain]  Cd Length: 76  Bit Score: 38.40  E-value: 9.96e-05
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|..
gi 23477283  82 SPFDALSEREIQIALMIVGCQKVQIISDKLCLSPKTVNTYRYRIFEKLSITS 133
Cdd:COG5905   8 SHPSLLTKREREVLELLAEGLTNKEIARQLFISEKTVKNHVSNILRKLGVRN 59
MalT COG2909
ATP-, maltotriose- and DNA-dependent transcriptional regulator MalT [Transcription];
107-133 9.27e-04

ATP-, maltotriose- and DNA-dependent transcriptional regulator MalT [Transcription];


Pssm-ID: 442153 [Multi-domain]  Cd Length: 184  Bit Score: 37.38  E-value: 9.27e-04
                        10        20
                ....*....|....*....|....*..
gi 23477283 107 ISDKLCLSPKTVNTYRYRIFEKLSITS 133
Cdd:COG2909 143 IAERLFISVNTVKTHLRNIYRKLGVRS 169
CheY COG0784
CheY-like REC (receiver) domain, includes chemotaxis protein CheY and sporulation regulator ...
 1-61 1.00e-03

CheY-like REC (receiver) domain, includes chemotaxis protein CheY and sporulation regulator Spo0F [Signal transduction mechanisms];


Pssm-ID: 440547 [Multi-domain]  Cd Length: 128  Bit Score: 36.75  E-value: 1.00e-03
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 23477283   1 LEATRKL--LRSHPDIKVVAVT--VCEEDpfPTRLLQASAAGYLTKGAGLNEMVQAIRLVFAGQR 61
Cdd:COG0784  65 LELLRRIraLPRLPDIPIIALTayADEED--RERALEAGADDYLTKPVDPEELLEALRRLLARAS 127
REC_DesR-like cd19930
phosphoacceptor receiver (REC) domain of DesR and similar proteins; This group is composed of ...
 1-58 1.02e-03

phosphoacceptor receiver (REC) domain of DesR and similar proteins; This group is composed of Bacillus subtilis DesR, Streptococcus pneumoniae response regulator spr1814, and similar proteins, all containing an N-terminal REC domain and a C-terminal LuxR family helix-turn-helix (HTH) DNA-binding output domain. DesR is a response regulator that, together with its cognate sensor kinase DesK, comprises a two-component regulatory system that controls membrane fluidity. Phosphorylation of the REC domain of DesR is allosterically coupled to two distinct exposed surfaces of the protein, controlling noncanonical dimerization/tetramerization, cooperative activation, and DesK binding. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.


Pssm-ID: 381157 [Multi-domain]  Cd Length: 117  Bit Score: 36.48  E-value: 1.02e-03
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*...
gi 23477283   1 LEATRKLLRSHPDIKVVAVTVCEEDPFPTRLLQASAAGYLTKGAGLNEMVQAIRLVFA 58
Cdd:cd19930  60 LEVAAELREELPDTKVLIVTTFGRPGYFRRALAAGVDGYVLKDRPIEELADAIRTVHA 117
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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