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Conserved domains on  [gi|27754589|gb|AAO22741|]
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putative arabinogalactan-protein (AGP17) [Arabidopsis thaliana]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK12323 super family cl46901
DNA polymerase III subunit gamma/tau;
22-133 5.43e-05

DNA polymerase III subunit gamma/tau;


The actual alignment was detected with superfamily member PRK14951:

Pssm-ID: 481241 [Multi-domain]  Cd Length: 618  Bit Score: 42.78  E-value: 5.43e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27754589   22 QSPATAPIHSPSTSPHKPKPTSPAISPAAPT--------PESTEAPAKTPVEAPVEAPPSPTPASTPQISPPAPSPE--A 91
Cdd:PRK14951 367 AAAAEAAAPAEKKTPARPEAAAPAAAPVAQAaaapapaaAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAavA 446

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 27754589   92 DTPSAPEIAPSADVPAPALTKHKKKTKKHKTAPAPGPASELL 133
Cdd:PRK14951 447 LAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARL 488
 
Name Accession Description Interval E-value
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 22-133 5.43e-05

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 42.78  E-value: 5.43e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27754589   22 QSPATAPIHSPSTSPHKPKPTSPAISPAAPT--------PESTEAPAKTPVEAPVEAPPSPTPASTPQISPPAPSPE--A 91
Cdd:PRK14951 367 AAAAEAAAPAEKKTPARPEAAAPAAAPVAQAaaapapaaAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAavA 446

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 27754589   92 DTPSAPEIAPSADVPAPALTKHKKKTKKHKTAPAPGPASELL 133
Cdd:PRK14951 447 LAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARL 488
 
Name Accession Description Interval E-value
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 22-133 5.43e-05

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 42.78  E-value: 5.43e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27754589   22 QSPATAPIHSPSTSPHKPKPTSPAISPAAPT--------PESTEAPAKTPVEAPVEAPPSPTPASTPQISPPAPSPE--A 91
Cdd:PRK14951 367 AAAAEAAAPAEKKTPARPEAAAPAAAPVAQAaaapapaaAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAavA 446

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 27754589   92 DTPSAPEIAPSADVPAPALTKHKKKTKKHKTAPAPGPASELL 133
Cdd:PRK14951 447 LAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARL 488
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 18-108 6.10e-05

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 42.57  E-value: 6.10e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27754589    18 TVGGQSPATAPIHSPSTSPHKPKPTSPAISPAAPTPESTEAPAKTPVEAPVeappsptpastpqiSPPAPSPEADTPSAP 97
Cdd:PRK12270   39 GSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAA--------------AAAAAAPAAPPAAAA 104

                          90
                  ....*....|.
gi 27754589    98 EIAPSADVPAP 108
Cdd:PRK12270  105 AAAPAAAAVED 115
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 38-109 5.23e-04

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 39.87  E-value: 5.23e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 27754589    38 KPKPTSPAISPAAPTPESTEAPAKTPVEAPVEAPPSPTPASTPQISPPAPSPEADTPSAPEIAPSADVPAPA 109
Cdd:PRK12270   37 GPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAP 108
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 40-131 7.16e-04

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 39.49  E-value: 7.16e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27754589    40 KPTSPAISPAAPTPESTEAPAKTPVEAPVEAppsptpastpqiSPPAPSPEADTPSAPEIAPSADVPAPALTKHKKKTKK 119
Cdd:PRK12270   37 GPGSTAAPTAAAAAAAAAASAPAAAPAAKAP------------AAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAA 104

                          90
                  ....*....|..
gi 27754589   120 HKTAPAPGPASE 131
Cdd:PRK12270  105 AAAPAAAAVEDE 116
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 18-108 1.66e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 38.16  E-value: 1.66e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27754589   18 TVGGQSPATAPIHSPSTSPHKPKPTSPAISPAAPTPESTEAPAKTPVEAPVEAPPSPTPASTPQISPPAPSPEADTPSAP 97
Cdd:PRK14951 397 AAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAA 476

                         90
                 ....*....|.
gi 27754589   98 EIAPSADVPAP 108
Cdd:PRK14951 477 PAPAAAPAAAR 487
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 24-108 1.67e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 38.25  E-value: 1.67e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27754589   24 PATAPIHSPSTSPHKPKPtspAISPAAPTPESTEAPAKTPVEAPVEAPPSPTPASTPQISPPAPSPEADTPSAP--EIAP 101
Cdd:PRK14950 366 PQPAKPTAAAPSPVRPTP---APSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPHTPESAPKLTRAAIpvDEKP 442


                 ....*..
gi 27754589  102 SADVPAP 108
Cdd:PRK14950 443 KYTPPAP 449
PRK13042 PRK13042
superantigen-like protein SSL4; Reviewed;
6-99 1.74e-03

superantigen-like protein SSL4; Reviewed;


Pssm-ID: 183854 [Multi-domain]  Cd Length: 291  Bit Score: 38.08  E-value: 1.74e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27754589    6 LLTVTLICIVFITVGGQSPATAPIHSPSTSPHKPKPTSPAISPAAPTPESTEapaktpVEAPveappsptpastpqispp 85
Cdd:PRK13042  15 LLTTGVITTTTQAANATTPSSTKVEAPQSTPPSTKVEAPQSKPNATTPPSTK------VEAP------------------ 70

                         90
                 ....*....|....
gi 27754589   86 APSPEADTPSAPEI 99
Cdd:PRK13042  71 QQTPNATTPSSTKV 84
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 17-131 2.37e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 38.04  E-value: 2.37e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27754589   17 ITVGGQSPATAPIHSPSTSPhkpkPTSPAISPAAPTPESTEAPAKTPVEAPVEAPPSPTPASTPQISPPAPSPEADTPSA 96
Cdd:PRK07764 385 LGVAGGAGAPAAAAPSAAAA----APAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAA 460

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 27754589   97 PEIAPSADVPAPALTKHKKKTKKHKTAPAPGPASE 131
Cdd:PRK07764 461 APSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPA 495
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 20-163 3.18e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 37.66  E-value: 3.18e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27754589   20 GGQSPATAPIHSPSTSPHKPKPTSPAISPAAPTPESTEAPAKTPVEAPVEAPPSPTPASTPQISPPAPSPEADTPSAPEI 99
Cdd:PRK07764 597 GEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGA 676

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 27754589  100 APSADVPAPALTKHKKKTKKHKTAPAPGPASELLSPPAPPGEAPGPGPSDAFSPAADDQSGAQR 163
Cdd:PRK07764 677 APAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVP 740
PRK13042 PRK13042
superantigen-like protein SSL4; Reviewed;
7-97 4.12e-03

superantigen-like protein SSL4; Reviewed;


Pssm-ID: 183854 [Multi-domain]  Cd Length: 291  Bit Score: 36.92  E-value: 4.12e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27754589    7 LTVTLICIVFITVGGQSP-ATAPihsPSTSPHKPKPTSPAISPAAPTPE-STEAPAKTPVEAPveappsptpastpQISP 84
Cdd:PRK13042  11 LALGLLTTGVITTTTQAAnATTP---SSTKVEAPQSTPPSTKVEAPQSKpNATTPPSTKVEAP-------------QQTP 74

                         90
                 ....*....|....*.
gi 27754589   85 PAPSPEA---DTPSAP 97
Cdd:PRK13042  75 NATTPSStkvETPQSP 90
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 39-109 4.94e-03

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 37.18  E-value: 4.94e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 27754589    39 PKPTSPAISPAAPTPESTEAPAKTPVEAPVEAPPSPTPASTPQISP-PAPSPEADTPSAPEIAPSADVPAPA 109
Cdd:PRK12270   39 GSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPkPAAAAAAAAAPAAPPAAAAAAAPAA 110
rne PRK10811
ribonuclease E; Reviewed
 38-129 6.49e-03

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 36.56  E-value: 6.49e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27754589    38 KPKPTSPAISPAA------PTPESTEAPAKTPVEAPVEAPPSPTPASTPQISPPAPSPEADTPSAPEIAPSADVPAPALT 111
Cdd:PRK10811  927 QPQVITESDVAVAqevaehAEPVVEPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAPAQV 1006

                          90       100
                  ....*....|....*....|.
gi 27754589   112 KHKKKTKKHKTAP---APGPA 129
Cdd:PRK10811 1007 PEATVEHNHATAPmtrAPAPE 1027
PHA03269 PHA03269
envelope glycoprotein C; Provisional
 5-130 8.31e-03

envelope glycoprotein C; Provisional


Pssm-ID: 165527 [Multi-domain]  Cd Length: 566  Bit Score: 36.24  E-value: 8.31e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27754589    5 ILLTVTLICIVFITVGGQSPATAPIHSPSTSPHKPKPTSPAISPAAPTPESTEAPAKTPVEAPVEAPPSPTPASTPQISP 84
Cdd:PHA03269   6 IILIITIACINLIIANLNTNIPIPELHTSAATQKPDPAPAPHQAASRAPDPAVAPTSAASRKPDLAQAPTPAASEKFDPA 85

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 27754589   85 PAPSPEADTPSAPEIAP-SADVPAPALTKHKKKTKKHKTAPAPGPAS 130
Cdd:PHA03269  86 PAPHQAASRAPDPAVAPqLAAAPKPDAAEAFTSAAQAHEAPADAGTS 132
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
20-177 8.65e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 36.37  E-value: 8.65e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27754589   20 GGQSPATAPIHSPSTSPHKPKPTSPAISPAAPTPESTEAPAKTPvEAPVEAPPSPTPASTPQISPPAPSPEADTPSAPEI 99
Cdd:PRK07003 369 GGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAP-KAAAAAAATRAEAPPAAPAPPATADRGDDAADGDA 447

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 27754589  100 APSADVPAPALTKHKKKTKKHKTAPAPGPASELLSPPAPPGEAPGPGPSDAFSPAADDQSGAQRISVVIQMVGAAAIA 177
Cdd:PRK07003 448 PVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAA 525
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 22-131 8.77e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 36.23  E-value: 8.77e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27754589   22 QSPATAPIhSPSTSPHKPKPTSPAISPAAPTPESTEAPAKTPvEAPVEAPPSPTPASTPQISPPAPSPEADTPSAPEIAP 101
Cdd:PRK14951 387 AAPAAAPV-AQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVA-APAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPV 464

                         90       100       110
                 ....*....|....*....|....*....|
gi 27754589  102 SADvPAPALTKHKKKTKKHKTAPAPGPASE 131
Cdd:PRK14951 465 RVA-PEPAVASAAPAPAAAPAAARLTPTEE 493
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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