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Conserved domains on  [gi|28393572|gb|AAO42206|]
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putative ferredoxin [Arabidopsis thaliana]

Protein Classification

ferredoxin( domain architecture ID 10797692)

ferredoxin is an iron-sulfur protein transfering electrons in a wide variety of metabolic reactions

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
fdx_plant TIGR02008
ferredoxin [2Fe-2S]; This model represents single domain 2Fe-2S (also called plant type) ...
 59-155 9.54e-59

ferredoxin [2Fe-2S]; This model represents single domain 2Fe-2S (also called plant type) ferredoxins. In general, these occur as a single domain proteins or with a chloroplast transit peptide. Species tend to be photosynthetic, but several forms may occur in one species and individually may not be associated with photocynthesis. Halobacterial forms differ somewhat in architecture; they score between trusted and noise cutoffs. Sequences scoring below the noise cutoff tend to be ferredoxin-related domains of larger proteins.


:

Pssm-ID: 273926 [Multi-domain]  Cd Length: 97  Bit Score: 177.65  E-value: 9.54e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28393572    59 AVYKVKLLGPDGQEDEFEVQDDQYILDAAEEAGVDLPYSCRAGACSTCAGQIVSGNVDQSDGSFLEDSHLEKGYVLTCVA 138
Cdd:TIGR02008   1 ATYKVTLVNPDGGEETIECPDDQYILDAAEEAGIDLPYSCRAGACSTCAGKVEEGTVDQSDQSFLDDDQMEAGYVLTCVA 80

                          90
                  ....*....|....*..
gi 28393572   139 YPQSDCVIHTHKETELF 155
Cdd:TIGR02008  81 YPTSDCTIETHKEEDLY 97
 
Name Accession Description Interval E-value
fdx_plant TIGR02008
ferredoxin [2Fe-2S]; This model represents single domain 2Fe-2S (also called plant type) ...
 59-155 9.54e-59

ferredoxin [2Fe-2S]; This model represents single domain 2Fe-2S (also called plant type) ferredoxins. In general, these occur as a single domain proteins or with a chloroplast transit peptide. Species tend to be photosynthetic, but several forms may occur in one species and individually may not be associated with photocynthesis. Halobacterial forms differ somewhat in architecture; they score between trusted and noise cutoffs. Sequences scoring below the noise cutoff tend to be ferredoxin-related domains of larger proteins.


Pssm-ID: 273926 [Multi-domain]  Cd Length: 97  Bit Score: 177.65  E-value: 9.54e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28393572    59 AVYKVKLLGPDGQEDEFEVQDDQYILDAAEEAGVDLPYSCRAGACSTCAGQIVSGNVDQSDGSFLEDSHLEKGYVLTCVA 138
Cdd:TIGR02008   1 ATYKVTLVNPDGGEETIECPDDQYILDAAEEAGIDLPYSCRAGACSTCAGKVEEGTVDQSDQSFLDDDQMEAGYVLTCVA 80

                          90
                  ....*....|....*..
gi 28393572   139 YPQSDCVIHTHKETELF 155
Cdd:TIGR02008  81 YPTSDCTIETHKEEDLY 97
petF CHL00134
ferredoxin; Validated
 59-155 2.43e-53

ferredoxin; Validated


Pssm-ID: 177056 [Multi-domain]  Cd Length: 99  Bit Score: 163.74  E-value: 2.43e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28393572   59 AVYKVKLLG-PDGQEDEFEVQDDQYILDAAEEAGVDLPYSCRAGACSTCAGQIVSGNVDQSDGSFLEDSHLEKGYVLTCV 137
Cdd:CHL00134   2 ATYKVTLLSeEEGIDVTIDCPDDVYILDAAEEQGIDLPYSCRAGACSTCAGKVTEGTVDQSDQSFLDDDQLEAGFVLTCV 81

                         90
                 ....*....|....*...
gi 28393572  138 AYPQSDCVIHTHKETELF 155
Cdd:CHL00134  82 AYPTSDCTILTHQEEELY 99
Fdx COG0633
Ferredoxin [Energy production and conversion];
69-149 4.44e-33

Ferredoxin [Energy production and conversion];


Pssm-ID: 440398 [Multi-domain]  Cd Length: 87  Bit Score: 112.25  E-value: 4.44e-33
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28393572  69 DGQEDEFEVQDDQYILDAAEEAGVDLPYSCRAGACSTCAGQIVSGNVDQSDGSFLEDSHLEKGYVLTCVAYPQSDCVIHT 148
Cdd:COG0633   7 IPEGHTVEVPAGESLLEAALRAGIDLPYSCRSGACGTCHVRVLEGEVDHREEDALSDEERAAGSRLACQARPTSDLVVEL 86


                .
gi 28393572 149 H 149
Cdd:COG0633  87 P 87
fer2 cd00207
2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in ...
 68-147 5.51e-33

2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis and ferredoxins, which participate in redox chains (from bacteria to mammals). Fold is ismilar to thioredoxin.


Pssm-ID: 238126 [Multi-domain]  Cd Length: 84  Bit Score: 111.72  E-value: 5.51e-33
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28393572  68 PDGQEDEFEVQDDQYILDAAEEAGVDLPYSCRAGACSTCAGQIVSGNVDQSDGSFLEDSHLEKGYVLTCVAYPQSDCVIH 147
Cdd:cd00207   5 VPGSGVEVEVPEGETLLDAAREAGIDIPYSCRAGACGTCKVEVVEGEVDQSDPSLLDEEEAEGGYVLACQTRVTDGLVIE 84
Frdxn_Halo NF041393
ferredoxin Fer;
75-145 1.00e-22

ferredoxin Fer;


Pssm-ID: 469284 [Multi-domain]  Cd Length: 128  Bit Score: 86.99  E-value: 1.00e-22
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 28393572   75 FEVQDDQYILDAAEEAGVDLPYSCRAGACSTCAGQIVSGNVDQSDGSFLEDSHL-EKGYVLTCVAYPQSDCV 145
Cdd:NF041393  40 FEVEEGEYILEAAEDAGYDWPFSCRAGACANCAAIVVEGEIEMDMQQILSDEEVeERNIRLTCVGTPATDEV 111
Fer2 pfam00111
2Fe-2S iron-sulfur cluster binding domain;
68-141 1.94e-22

2Fe-2S iron-sulfur cluster binding domain;


Pssm-ID: 395061 [Multi-domain]  Cd Length: 77  Bit Score: 84.88  E-value: 1.94e-22
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 28393572    68 PDGQEDEFEVQDDQY-ILDAAEEAGVDLPYSCRAGACSTCAGQIVSGNvDQSDGSFLEDSHLEKGYV-LTCVAYPQ 141
Cdd:pfam00111   3 INGKGVTIEVPDGETtLLDAAEEAGIDIPYSCRGGGCGTCAVKVLEGE-DQSDQSFLEDDELAAGYVvLACQTYPK 77
 
Name Accession Description Interval E-value
fdx_plant TIGR02008
ferredoxin [2Fe-2S]; This model represents single domain 2Fe-2S (also called plant type) ...
 59-155 9.54e-59

ferredoxin [2Fe-2S]; This model represents single domain 2Fe-2S (also called plant type) ferredoxins. In general, these occur as a single domain proteins or with a chloroplast transit peptide. Species tend to be photosynthetic, but several forms may occur in one species and individually may not be associated with photocynthesis. Halobacterial forms differ somewhat in architecture; they score between trusted and noise cutoffs. Sequences scoring below the noise cutoff tend to be ferredoxin-related domains of larger proteins.


Pssm-ID: 273926 [Multi-domain]  Cd Length: 97  Bit Score: 177.65  E-value: 9.54e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28393572    59 AVYKVKLLGPDGQEDEFEVQDDQYILDAAEEAGVDLPYSCRAGACSTCAGQIVSGNVDQSDGSFLEDSHLEKGYVLTCVA 138
Cdd:TIGR02008   1 ATYKVTLVNPDGGEETIECPDDQYILDAAEEAGIDLPYSCRAGACSTCAGKVEEGTVDQSDQSFLDDDQMEAGYVLTCVA 80

                          90
                  ....*....|....*..
gi 28393572   139 YPQSDCVIHTHKETELF 155
Cdd:TIGR02008  81 YPTSDCTIETHKEEDLY 97
petF CHL00134
ferredoxin; Validated
 59-155 2.43e-53

ferredoxin; Validated


Pssm-ID: 177056 [Multi-domain]  Cd Length: 99  Bit Score: 163.74  E-value: 2.43e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28393572   59 AVYKVKLLG-PDGQEDEFEVQDDQYILDAAEEAGVDLPYSCRAGACSTCAGQIVSGNVDQSDGSFLEDSHLEKGYVLTCV 137
Cdd:CHL00134   2 ATYKVTLLSeEEGIDVTIDCPDDVYILDAAEEQGIDLPYSCRAGACSTCAGKVTEGTVDQSDQSFLDDDQLEAGFVLTCV 81

                         90
                 ....*....|....*...
gi 28393572  138 AYPQSDCVIHTHKETELF 155
Cdd:CHL00134  82 AYPTSDCTILTHQEEELY 99
PTZ00038 PTZ00038
ferredoxin; Provisional
 61-154 6.49e-49

ferredoxin; Provisional


Pssm-ID: 240237 [Multi-domain]  Cd Length: 191  Bit Score: 155.77  E-value: 6.49e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28393572   61 YKVKLLGPDGqEDEFEVQDDQYILDAAEEAGVDLPYSCRAGACSTCAGQIVSGNVDQSDGSFLEDSHLEKGYVLTCVAYP 140
Cdd:PTZ00038  96 YNITLQTPDG-EKVIECDEDEYILDAAERQGVELPYSCRGGSCSTCAAKLLEGEVDNEDQSYLDDEQLKKGYCLLCTCYP 174

                         90
                 ....*....|....
gi 28393572  141 QSDCVIHTHKETEL 154
Cdd:PTZ00038 175 KSDCTIETHKEDEL 188
PLN03136 PLN03136
Ferredoxin; Provisional
 1-154 4.03e-45

Ferredoxin; Provisional


Pssm-ID: 178681 [Multi-domain]  Cd Length: 148  Bit Score: 144.89  E-value: 4.03e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28393572    1 MATVRISSTSMTKAVLRSQTTNklITNKSynLSVGSTKRVsrsFGLKCSANSGG-ATMSAVYKVKLLGPDGqEDEFEVQD 79
Cdd:PLN03136   1 MASTALSSAIVSTSFLRRQQTP--ISLRS--LPSANTQSL---FGLKSSTARGGrVTAMATYKVKFITPEG-EQEVECEE 72

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 28393572   80 DQYILDAAEEAGVDLPYSCRAGACSTCAGQIVSGNVDQSDGSFLEDSHLEKGYVLTCVAYPQSDCVIHTHKETEL 154
Cdd:PLN03136  73 DVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDDEQISEGYVLTCVAYPTSDVVIETHKEEAI 147
Fdx COG0633
Ferredoxin [Energy production and conversion];
69-149 4.44e-33

Ferredoxin [Energy production and conversion];


Pssm-ID: 440398 [Multi-domain]  Cd Length: 87  Bit Score: 112.25  E-value: 4.44e-33
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28393572  69 DGQEDEFEVQDDQYILDAAEEAGVDLPYSCRAGACSTCAGQIVSGNVDQSDGSFLEDSHLEKGYVLTCVAYPQSDCVIHT 148
Cdd:COG0633   7 IPEGHTVEVPAGESLLEAALRAGIDLPYSCRSGACGTCHVRVLEGEVDHREEDALSDEERAAGSRLACQARPTSDLVVEL 86


                .
gi 28393572 149 H 149
Cdd:COG0633  87 P 87
fer2 cd00207
2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in ...
 68-147 5.51e-33

2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis and ferredoxins, which participate in redox chains (from bacteria to mammals). Fold is ismilar to thioredoxin.


Pssm-ID: 238126 [Multi-domain]  Cd Length: 84  Bit Score: 111.72  E-value: 5.51e-33
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28393572  68 PDGQEDEFEVQDDQYILDAAEEAGVDLPYSCRAGACSTCAGQIVSGNVDQSDGSFLEDSHLEKGYVLTCVAYPQSDCVIH 147
Cdd:cd00207   5 VPGSGVEVEVPEGETLLDAAREAGIDIPYSCRAGACGTCKVEVVEGEVDQSDPSLLDEEEAEGGYVLACQTRVTDGLVIE 84
PRK07609 PRK07609
CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
 57-147 9.99e-28

CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated


Pssm-ID: 181058 [Multi-domain]  Cd Length: 339  Bit Score: 104.95  E-value: 9.99e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28393572   57 MSavYKVKLLgPDGQEdeFEVQDDQYILDAAEEAGVDLPYSCRAGACSTCAGQIVSGNVDQSDG--SFLEDSHLEKGYVL 134
Cdd:PRK07609   1 MS--FQVTLQ-PSGRQ--FTAEPDETILDAALRQGIHLPYGCKNGACGSCKGRLLEGEVEQGPHqaSALSGEERAAGEAL 75

                         90
                 ....*....|...
gi 28393572  135 TCVAYPQSDCVIH 147
Cdd:PRK07609  76 TCCAKPLSDLVLE 88
Frdxn_Halo NF041393
ferredoxin Fer;
75-145 1.00e-22

ferredoxin Fer;


Pssm-ID: 469284 [Multi-domain]  Cd Length: 128  Bit Score: 86.99  E-value: 1.00e-22
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 28393572   75 FEVQDDQYILDAAEEAGVDLPYSCRAGACSTCAGQIVSGNVDQSDGSFLEDSHL-EKGYVLTCVAYPQSDCV 145
Cdd:NF041393  40 FEVEEGEYILEAAEDAGYDWPFSCRAGACANCAAIVVEGEIEMDMQQILSDEEVeERNIRLTCVGTPATDEV 111
Fer2 pfam00111
2Fe-2S iron-sulfur cluster binding domain;
68-141 1.94e-22

2Fe-2S iron-sulfur cluster binding domain;


Pssm-ID: 395061 [Multi-domain]  Cd Length: 77  Bit Score: 84.88  E-value: 1.94e-22
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 28393572    68 PDGQEDEFEVQDDQY-ILDAAEEAGVDLPYSCRAGACSTCAGQIVSGNvDQSDGSFLEDSHLEKGYV-LTCVAYPQ 141
Cdd:pfam00111   3 INGKGVTIEVPDGETtLLDAAEEAGIDIPYSCRGGGCGTCAVKVLEGE-DQSDQSFLEDDELAAGYVvLACQTYPK 77
COG3894 COG3894
Uncharacterized 2Fe-2S and 4Fe-4S clusters-containing protein, contains DUF4445 domain ...
 61-154 4.34e-15

Uncharacterized 2Fe-2S and 4Fe-4S clusters-containing protein, contains DUF4445 domain [Function unknown];


Pssm-ID: 443101 [Multi-domain]  Cd Length: 621  Bit Score: 70.99  E-value: 4.34e-15
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28393572  61 YKVKLLgPDGQEdeFEVQDDQYILDAAEEAGVDLPYSCR-AGACSTCAGQIVSGN---VDQSDGSFLEDSHLEKGYVLTC 136
Cdd:COG3894   4 VKVTFL-PSGKR--VEVEAGTTLLDAAREAGVDIDAPCGgRGTCGKCKVKVEEGEfspVTEEERRLLSPEELAEGYRLAC 80

                        90
                ....*....|....*...
gi 28393572 137 VAYPQSDCVIHTHKETEL 154
Cdd:COG3894  81 QARVLGDLVVEVPPESRL 98
antC PRK11872
anthranilate 1,2-dioxygenase electron transfer component AntC;
61-143 2.31e-11

anthranilate 1,2-dioxygenase electron transfer component AntC;


Pssm-ID: 183350 [Multi-domain]  Cd Length: 340  Bit Score: 60.14  E-value: 2.31e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28393572   61 YKVKLLGPDGQEDEFEVQDDQYILDAAEEAGVDLPYSCRAGACSTCAGQIVSGNVDQS--DGSFLEDSHLEKGYVLTCVA 138
Cdd:PRK11872   3 HKVALSFADGKTLFFPVGKDELLLDAALRNGINLPLDCREGVCGTCQGRCESGIYSQDyvDEDALSERDLAQRKMLACQT 82


                 ....*
gi 28393572  139 YPQSD 143
Cdd:PRK11872  83 RVKSD 87
PRK10684 PRK10684
HCP oxidoreductase, NADH-dependent; Provisional
 83-146 1.21e-07

HCP oxidoreductase, NADH-dependent; Provisional


Pssm-ID: 236735 [Multi-domain]  Cd Length: 332  Bit Score: 49.71  E-value: 1.21e-07
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 28393572   83 ILDAAEEAGVDLPYSCRAGACSTCAGQIVSGNVDQSDGSFLEDSHLEKGYVLTCVAYPQSDCVI 146
Cdd:PRK10684 268 LLEALESNKVPVVAACRAGVCGCCKTKVVSGEYTVSSTMTLTPAEIAQGYVLACSCHPQGDLVL 331
PRK05713 PRK05713
iron-sulfur-binding ferredoxin reductase;
83-136 1.38e-07

iron-sulfur-binding ferredoxin reductase;


Pssm-ID: 235575 [Multi-domain]  Cd Length: 312  Bit Score: 49.34  E-value: 1.38e-07
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 28393572   83 ILDAAEEAGVDLPYSCRAGACSTCAGQIVSGNVDQSDGSFLEDSHLEKGYVLTC 136
Cdd:PRK05713  19 LLDALNAAGVAVPYSCRAGSCHACLVRCLQGEPEDALPEALAAEKREQGWRLAC 72
PRK10713 PRK10713
2Fe-2S ferredoxin-like protein;
74-143 1.24e-04

2Fe-2S ferredoxin-like protein;


Pssm-ID: 182668 [Multi-domain]  Cd Length: 84  Bit Score: 38.56  E-value: 1.24e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 28393572   74 EFEVQDDQ-YILDAAEEAGVDLPYSCRAGACSTCAGQIVSGNVD--QSDGSFLEDshlekGYVLTCVAYPQSD 143
Cdd:PRK10713  12 QLLCQDEHpSLLAALESHNVAVEYQCREGYCGSCRTRLVAGQVDwiAEPLAFIQP-----GEILPCCCRAKGD 79
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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