NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|28950883|gb|AAO63365|]
View 

At5g50010 [Arabidopsis thaliana]

Protein Classification

basic helix-loop-helix domain-containing protein( domain architecture ID 14441669)

basic helix-loop-helix (bHLH) domain-containing protein is a DNA-binding protein that may act as a transcription factor; similar to Arabidopsis thaliana suppressor of acaulis 51 (SAC51) involved in stem elongation, probably by regulating a subset of genes involved in this process

Gene Ontology:  GO:0003677
PubMed:  12897250|14600211|20219281

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
bHLH_AtSAC51_like cd18917
basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana suppressor of acaulis 51 ...
 258-310 6.99e-20

basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana suppressor of acaulis 51 (SAC51) and similar proteins; SAC51, also termed AtbHLH142, or EN 128, is a bHLH transcription factor that is involved in stem elongation, probably by regulating a subset of genes involved in this process.


:

Pssm-ID: 381487  Cd Length: 53  Bit Score: 81.31  E-value: 6.99e-20
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|...
gi 28950883 258 KLSSNKIGEEKIFETVSLLRSVVPGEELVDPILVIDRAIDYLKSLKMEAKNRE 310
Cdd:cd18917   1 GLSNEKSRKEKIKKAVKLLRSIVPGGESMDTALVLDEAIDYLKSLKMELQSLE 53
 
Name Accession Description Interval E-value
bHLH_AtSAC51_like cd18917
basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana suppressor of acaulis 51 ...
 258-310 6.99e-20

basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana suppressor of acaulis 51 (SAC51) and similar proteins; SAC51, also termed AtbHLH142, or EN 128, is a bHLH transcription factor that is involved in stem elongation, probably by regulating a subset of genes involved in this process.


Pssm-ID: 381487  Cd Length: 53  Bit Score: 81.31  E-value: 6.99e-20
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|...
gi 28950883 258 KLSSNKIGEEKIFETVSLLRSVVPGEELVDPILVIDRAIDYLKSLKMEAKNRE 310
Cdd:cd18917   1 GLSNEKSRKEKIKKAVKLLRSIVPGGESMDTALVLDEAIDYLKSLKMELQSLE 53
 
Name Accession Description Interval E-value
bHLH_AtSAC51_like cd18917
basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana suppressor of acaulis 51 ...
 258-310 6.99e-20

basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana suppressor of acaulis 51 (SAC51) and similar proteins; SAC51, also termed AtbHLH142, or EN 128, is a bHLH transcription factor that is involved in stem elongation, probably by regulating a subset of genes involved in this process.


Pssm-ID: 381487  Cd Length: 53  Bit Score: 81.31  E-value: 6.99e-20
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|...
gi 28950883 258 KLSSNKIGEEKIFETVSLLRSVVPGEELVDPILVIDRAIDYLKSLKMEAKNRE 310
Cdd:cd18917   1 GLSNEKSRKEKIKKAVKLLRSIVPGGESMDTALVLDEAIDYLKSLKMELQSLE 53
bHLH_AtbHLH_like cd11393
basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana genes coding transcription ...
 267-310 1.61e-03

basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana genes coding transcription factors and similar proteins; bHLH proteins are the second largest class of plant transcription factors that regulate transcription of genes that are involve in many essential physiological and developmental process. bHLH proteins are transcriptional regulators that are found in organisms from yeast to humans. The Arabidopsis bHLH proteins that have been characterized so far have roles in regulation of fruit dehiscence, cell development (carpel, anther and epidermal), phytochrome signaling, flavonoid biosynthesis, hormone signaling and stress responses.


Pssm-ID: 381399 [Multi-domain]  Cd Length: 53  Bit Score: 36.01  E-value: 1.61e-03
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....
gi 28950883 267 EKIFETVSLLRSVVPGEELVDPILVIDRAIDYLKSLKMEAKNRE 310
Cdd:cd11393  10 EKINERIRALRSLVPNGGKTDKASILDEAIEYIKFLQEQVKVLS 53
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH