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Conserved domains on  [gi|33149138|gb|AAP96655|]
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DNA polymerase III delta' subunit [[Haemophilus] ducreyi 35000HP]

Protein Classification

PRK06871 family protein( domain architecture ID 11482488)

PRK06871 family protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK06871 PRK06871
DNA polymerase III subunit delta'; Validated
 1-328 0e+00

DNA polymerase III subunit delta'; Validated


:

Pssm-ID: 180738 [Multi-domain]  Cd Length: 325  Bit Score: 575.53  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33149138    1 MALYPWLEQHYQQLTATFSNGRGHHALLFKSDVGLGTEKLIAQFAAWLLCQTPKQGHACDQCKSCLLLKNGNHPDLHILE 80
Cdd:PRK06871   1 MALYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILE 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33149138   81 SIDGKDIGIEQIRETNTKLQNFAQQGGNTVVYIKNAECLTAASGNALLKTLEEPNDKVYFLLAAPQQTAILPTIASRCQT 160
Cdd:PRK06871  81 PIDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQT 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33149138  161 WLIHSPEMALTLAWLQAQAPTATREaCEIAMRLCHQRPLICKTFLEKDRLTARKTFLRTFWRFFNNRDVFLLFSQFDKEk 240
Cdd:PRK06871 161 WLIHPPEEQQALDWLQAQSSAEISE-ILTALRINYGRPLLALTFLEQGLLEQRKTFLRQFWLFYRRRSPLELLPLFDKE- 238

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33149138  241 aLILEQLEWLESFFSDSIKAKLAITNGWINHDLHNGILQFSQQLDIKRLLIGHQLIQQTKWDLLAVNAINQELILLACLT 320
Cdd:PRK06871 239 -LVLQQLDWLLAFLSDALKAKLDIASGWICQDLQRGILQFSQQQSAQGLLKAHQIIQKVRSDLLQINAVNQELILLDGLT 317


                 ....*...
gi 33149138  321 KLTLNVFE 328
Cdd:PRK06871 318 RLVTEVFE 325
 
Name Accession Description Interval E-value
PRK06871 PRK06871
DNA polymerase III subunit delta'; Validated
 1-328 0e+00

DNA polymerase III subunit delta'; Validated


Pssm-ID: 180738 [Multi-domain]  Cd Length: 325  Bit Score: 575.53  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33149138    1 MALYPWLEQHYQQLTATFSNGRGHHALLFKSDVGLGTEKLIAQFAAWLLCQTPKQGHACDQCKSCLLLKNGNHPDLHILE 80
Cdd:PRK06871   1 MALYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILE 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33149138   81 SIDGKDIGIEQIRETNTKLQNFAQQGGNTVVYIKNAECLTAASGNALLKTLEEPNDKVYFLLAAPQQTAILPTIASRCQT 160
Cdd:PRK06871  81 PIDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQT 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33149138  161 WLIHSPEMALTLAWLQAQAPTATREaCEIAMRLCHQRPLICKTFLEKDRLTARKTFLRTFWRFFNNRDVFLLFSQFDKEk 240
Cdd:PRK06871 161 WLIHPPEEQQALDWLQAQSSAEISE-ILTALRINYGRPLLALTFLEQGLLEQRKTFLRQFWLFYRRRSPLELLPLFDKE- 238

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33149138  241 aLILEQLEWLESFFSDSIKAKLAITNGWINHDLHNGILQFSQQLDIKRLLIGHQLIQQTKWDLLAVNAINQELILLACLT 320
Cdd:PRK06871 239 -LVLQQLDWLLAFLSDALKAKLDIASGWICQDLQRGILQFSQQQSAQGLLKAHQIIQKVRSDLLQINAVNQELILLDGLT 317


                 ....*...
gi 33149138  321 KLTLNVFE 328
Cdd:PRK06871 318 RLVTEVFE 325
holB TIGR00678
DNA polymerase III, delta' subunit; This model describes the N-terminal half of the delta' ...
 11-199 1.41e-76

DNA polymerase III, delta' subunit; This model describes the N-terminal half of the delta' subunit of DNA polymerase III. Delta' is homologous to the gamma and tau subunits, which form an outgroup for phylogenetic comparison. The gamma/tau branch of the tree is much more tighly conserved than the delta' branch, and some members of that branch score more highly against this model than some proteins classisified as delta'. The noise cutoff is set to detect weakly scoring delta' subunits rather than to exclude gamma/tau subunits. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau. [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273213 [Multi-domain]  Cd Length: 188  Bit Score: 232.90  E-value: 1.41e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33149138    11 YQQLTATFSNGRGHHALLFKSDVGLGTEKLIAQFAAWLLCQTPKQGHACDQCKSCLLLKNGNHPDLHILESiDGKDIGIE 90
Cdd:TIGR00678   1 YQQLKRALEKGRLAHAYLFTGPEGVGKELLALALAKALLCEQRGGGEPCGECHSCRLIEAGNHPDLHRLEP-EGQSIKVD 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33149138    91 QIRETNTKLQNFAQQGGNTVVYIKNAECLTAASGNALLKTLEEPNDKVYFLLAAPQQTAILPTIASRCQTWLIHSPEMAL 170
Cdd:TIGR00678  80 QVRELVEFLSRTPQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQRLPFPPLSEEA 159

                         170       180
                  ....*....|....*....|....*....
gi 33149138   171 TLAWLQAQAPTAtrEACEIAMRLCHQRPL 199
Cdd:TIGR00678 160 LLQWLIRQGISE--EAAELLLALAGGSPG 186
HolB COG0470
DNA polymerase III, delta prime subunit [Replication, recombination and repair];
7-322 5.74e-71

DNA polymerase III, delta prime subunit [Replication, recombination and repair];


Pssm-ID: 440238 [Multi-domain]  Cd Length: 289  Bit Score: 222.16  E-value: 5.74e-71
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33149138   7 LEQHYQQLTATFSNGRGHHALLFKSDVGLGTEKLIAQFAAWLLCQTPKQGHACDQCKScLLLKNGNHPDLHILESIDGKD 86
Cdd:COG0470   1 QEEAWEQLLAAAESGRLPHALLLHGPPGIGKTTLALALARDLLCENPEGGKACGQCHS-RLMAAGNHPDLLELNPEEKSD 79

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33149138  87 -IGIEQIRETNTKLQNFAQQGGNTVVYIKNAECLTAASGNALLKTLEEPNDKVYFLLAAPQQTAILPTIASRCQTWLIHS 165
Cdd:COG0470  80 qIGIDQIRELGEFLSLTPLEGGRKVVIIDEADAMNEAAANALLKTLEEPPKNTPFILIANDPSRLLPTIRSRCQVIRFRP 159

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33149138 166 PEMALTLAWLQAQAPTAtrEACEIAMRLCHQRPLICKTFLEkdRLTARKTFLRTFWRFFNNRDVFLLFSQFDKEKAliLE 245
Cdd:COG0470 160 PSEEEALAWLREEGVDE--DALEAILRLAGGDPRAAINLLQ--ALAGRKELLEDLAALLSRDRALELLDALLKAEA--LE 233

                       250       260       270       280       290       300       310
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 33149138 246 QLEWLESFFSDSIKaklaitngwinhdlhngilqfsQQLDIKRLLIGHQLIQQTKWDLLavNAINQELILLACLTKL 322
Cdd:COG0470 234 LLDWLLKWLLDNLP----------------------LEYAGEDLARAYEALSEADRRLG--RYANDRLLLEALLAKL 286
DNA_pol3_delta2 pfam13177
DNA polymerase III, delta subunit; DNA polymerase III, delta subunit (EC 2.7.7.7) is required ...
 6-160 1.20e-43

DNA polymerase III, delta subunit; DNA polymerase III, delta subunit (EC 2.7.7.7) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalyzed reaction. The delta subunit is also known as HolA.


Pssm-ID: 433013 [Multi-domain]  Cd Length: 161  Bit Score: 147.36  E-value: 1.20e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33149138     6 WLEQHYQQLTATFSNGRGHHALLFKSDVGLGTEKLIAQFAAWLLCQTPKQGHACDQCKSCLLLKNGNHPDLHILESiDGK 85
Cdd:pfam13177   1 GQPEAIQLLQNSLENGRLSHAYLFSGPEGVGKLELALAFAKALFCEEPGDDLPCGQCRSCRRIESGNHPDLVIIEP-EGQ 79

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 33149138    86 DIGIEQIRETNTKLQNFAQQGGNTVVYIKNAECLTAASGNALLKTLEEPNDKVYFLLAAPQQTAILPTIASRCQT 160
Cdd:pfam13177  80 SIKIDQIRELQKEFSKSPYEGKKKVYIIEDAEKMTASAANSLLKFLEEPPGNTVIILLTENPSRLLPTIRSRCQI 154
 
Name Accession Description Interval E-value
PRK06871 PRK06871
DNA polymerase III subunit delta'; Validated
 1-328 0e+00

DNA polymerase III subunit delta'; Validated


Pssm-ID: 180738 [Multi-domain]  Cd Length: 325  Bit Score: 575.53  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33149138    1 MALYPWLEQHYQQLTATFSNGRGHHALLFKSDVGLGTEKLIAQFAAWLLCQTPKQGHACDQCKSCLLLKNGNHPDLHILE 80
Cdd:PRK06871   1 MALYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILE 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33149138   81 SIDGKDIGIEQIRETNTKLQNFAQQGGNTVVYIKNAECLTAASGNALLKTLEEPNDKVYFLLAAPQQTAILPTIASRCQT 160
Cdd:PRK06871  81 PIDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQT 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33149138  161 WLIHSPEMALTLAWLQAQAPTATREaCEIAMRLCHQRPLICKTFLEKDRLTARKTFLRTFWRFFNNRDVFLLFSQFDKEk 240
Cdd:PRK06871 161 WLIHPPEEQQALDWLQAQSSAEISE-ILTALRINYGRPLLALTFLEQGLLEQRKTFLRQFWLFYRRRSPLELLPLFDKE- 238

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33149138  241 aLILEQLEWLESFFSDSIKAKLAITNGWINHDLHNGILQFSQQLDIKRLLIGHQLIQQTKWDLLAVNAINQELILLACLT 320
Cdd:PRK06871 239 -LVLQQLDWLLAFLSDALKAKLDIASGWICQDLQRGILQFSQQQSAQGLLKAHQIIQKVRSDLLQINAVNQELILLDGLT 317


                 ....*...
gi 33149138  321 KLTLNVFE 328
Cdd:PRK06871 318 RLVTEVFE 325
holB TIGR00678
DNA polymerase III, delta' subunit; This model describes the N-terminal half of the delta' ...
 11-199 1.41e-76

DNA polymerase III, delta' subunit; This model describes the N-terminal half of the delta' subunit of DNA polymerase III. Delta' is homologous to the gamma and tau subunits, which form an outgroup for phylogenetic comparison. The gamma/tau branch of the tree is much more tighly conserved than the delta' branch, and some members of that branch score more highly against this model than some proteins classisified as delta'. The noise cutoff is set to detect weakly scoring delta' subunits rather than to exclude gamma/tau subunits. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau. [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273213 [Multi-domain]  Cd Length: 188  Bit Score: 232.90  E-value: 1.41e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33149138    11 YQQLTATFSNGRGHHALLFKSDVGLGTEKLIAQFAAWLLCQTPKQGHACDQCKSCLLLKNGNHPDLHILESiDGKDIGIE 90
Cdd:TIGR00678   1 YQQLKRALEKGRLAHAYLFTGPEGVGKELLALALAKALLCEQRGGGEPCGECHSCRLIEAGNHPDLHRLEP-EGQSIKVD 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33149138    91 QIRETNTKLQNFAQQGGNTVVYIKNAECLTAASGNALLKTLEEPNDKVYFLLAAPQQTAILPTIASRCQTWLIHSPEMAL 170
Cdd:TIGR00678  80 QVRELVEFLSRTPQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQRLPFPPLSEEA 159

                         170       180
                  ....*....|....*....|....*....
gi 33149138   171 TLAWLQAQAPTAtrEACEIAMRLCHQRPL 199
Cdd:TIGR00678 160 LLQWLIRQGISE--EAAELLLALAGGSPG 186
PRK07993 PRK07993
DNA polymerase III subunit delta'; Validated
 1-325 7.56e-76

DNA polymerase III subunit delta'; Validated


Pssm-ID: 181190 [Multi-domain]  Cd Length: 334  Bit Score: 236.12  E-value: 7.56e-76
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33149138    1 MALYPWLEQHYQQLTATFSNGRGHHALLFKSDVGLGTEKLIAQFAAWLLCQTPkQGH-ACDQCKSCLLLKNGNHPDLHIL 79
Cdd:PRK07993   1 MKWYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQP-QGHkSCGHCRGCQLMQAGTHPDYYTL 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33149138   80 ESIDGKD-IGIEQIRETNTKLQNFAQQGGNTVVYIKNAECLTAASGNALLKTLEEPNDKVYFLLAAPQQTAILPTIASRC 158
Cdd:PRK07993  80 TPEKGKSsLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRC 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33149138  159 QTWLIHSPEMALTLAWLQAQAPtATREACEIAMRLCHQRPLICKTFLEKDRLTARKTFLRTFWRFFNNRDVFLLFSQFDK 238
Cdd:PRK07993 160 RLHYLAPPPEQYALTWLSREVT-MSQDALLAALRLSAGAPGAALALLQPERWQQREALCQALAYALPSGDWLSLLPALNH 238

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33149138  239 EKAliLEQLEWLESFFSDSIKAKLAITNgWINHDLHNGILQFSQQLDIKRLLIGHQLIQQTKWDLLAVNAINQELIllac 318
Cdd:PRK07993 239 EQA--PARLHWLATLLMDALKRQHGAAY-VTNQDQPPLVAQLANHLSPARLQAILGDVCHCREQLLSVTGVNRELL---- 311


                 ....*..
gi 33149138  319 LTKLTLN 325
Cdd:PRK07993 312 LTDLLLR 318
HolB COG0470
DNA polymerase III, delta prime subunit [Replication, recombination and repair];
7-322 5.74e-71

DNA polymerase III, delta prime subunit [Replication, recombination and repair];


Pssm-ID: 440238 [Multi-domain]  Cd Length: 289  Bit Score: 222.16  E-value: 5.74e-71
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33149138   7 LEQHYQQLTATFSNGRGHHALLFKSDVGLGTEKLIAQFAAWLLCQTPKQGHACDQCKScLLLKNGNHPDLHILESIDGKD 86
Cdd:COG0470   1 QEEAWEQLLAAAESGRLPHALLLHGPPGIGKTTLALALARDLLCENPEGGKACGQCHS-RLMAAGNHPDLLELNPEEKSD 79

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33149138  87 -IGIEQIRETNTKLQNFAQQGGNTVVYIKNAECLTAASGNALLKTLEEPNDKVYFLLAAPQQTAILPTIASRCQTWLIHS 165
Cdd:COG0470  80 qIGIDQIRELGEFLSLTPLEGGRKVVIIDEADAMNEAAANALLKTLEEPPKNTPFILIANDPSRLLPTIRSRCQVIRFRP 159

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33149138 166 PEMALTLAWLQAQAPTAtrEACEIAMRLCHQRPLICKTFLEkdRLTARKTFLRTFWRFFNNRDVFLLFSQFDKEKAliLE 245
Cdd:COG0470 160 PSEEEALAWLREEGVDE--DALEAILRLAGGDPRAAINLLQ--ALAGRKELLEDLAALLSRDRALELLDALLKAEA--LE 233

                       250       260       270       280       290       300       310
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 33149138 246 QLEWLESFFSDSIKaklaitngwinhdlhngilqfsQQLDIKRLLIGHQLIQQTKWDLLavNAINQELILLACLTKL 322
Cdd:COG0470 234 LLDWLLKWLLDNLP----------------------LEYAGEDLARAYEALSEADRRLG--RYANDRLLLEALLAKL 286
PRK06090 PRK06090
DNA polymerase III subunit delta'; Validated
 1-316 5.37e-54

DNA polymerase III subunit delta'; Validated


Pssm-ID: 180394 [Multi-domain]  Cd Length: 319  Bit Score: 179.23  E-value: 5.37e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33149138    1 MALYPWLEQHYQQLTATFSNGRGHHALLFKSDVGLGTEKLIAQFAAWLLCQTpKQGHACDQCKSCLLLKNGNHPDLHILE 80
Cdd:PRK06090   2 NNDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQN-YQSEACGFCHSCELMQSGNHPDLHVIK 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33149138   81 -SIDGKDIGIEQIRETNTKLQNFAQQGGNTVVYIKNAECLTAASGNALLKTLEEPNDKVYFLLAAPQQTAILPTIASRCQ 159
Cdd:PRK06090  81 pEKEGKSITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQ 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33149138  160 TWLIHSPEMALTLAWLQAQAPTATreacEIAMRLCHQRPLICKTFLEKDRLTARKTFLRTFWRFFNN--RDVFLLFSQFD 237
Cdd:PRK06090 161 QWVVTPPSTAQAMQWLKGQGITVP----AYALKLNMGSPLKTLAMMKEGGLEKYHKLERQLVDALSGpvSDQLKCASLIA 236

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 33149138  238 KEkalILEQLEWLESFFSDSIKAKLaitnGWINHDLHNGILQFsQQLDIKRLLIGHQLIQQTKWDLLAVNAINQELILL 316
Cdd:PRK06090 237 AD---PLTHLSWLWLLLTDAQKVHF----GVQNEYYLPGSAAL-GPFTYSGLYVSTAKLERLKEQLQQFSGLNTELLIM 307
PRK05707 PRK05707
DNA polymerase III subunit delta'; Validated
 4-319 1.69e-51

DNA polymerase III subunit delta'; Validated


Pssm-ID: 180215 [Multi-domain]  Cd Length: 328  Bit Score: 172.97  E-value: 1.69e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33149138    4 YPWLEQHYQQLTAtfsNGRGHHALLFKSDVGLGTEKLIAQFAAWLLCQTPKQGHACDQCKSCLLLKNGNHPDLHILESID 83
Cdd:PRK05707   5 YPWQQSLWQQLAG---RGRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEE 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33149138   84 G-KDIGIEQIRETNTKLQNFAQQGGNTVVYIKNAECLTAASGNALLKTLEEPNDKVYFLLAAPQQTAILPTIASRCQTWL 162
Cdd:PRK05707  82 AdKTIKVDQVRELVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQA 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33149138  163 IHSPEMALTLAWLQAQAPTATREACEIAMRLCHQRPLICKTFLEKDRLTARKTFLRTFWRFFNNR-DVFLLFSQFDKEKa 241
Cdd:PRK05707 162 CPLPSNEESLQWLQQALPESDERERIELLTLAGGSPLRALQLHEQGVREQRARVLDGVKKLLKQQqSASQLAESWLKVP- 240

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 33149138  242 lILEQLEWLESFFSDSIKAKLAI-TNGWINHDLHNGILQFSQQLDIKRLLIGHQLIQQTKWDLLAVNAINQELILLACL 319
Cdd:PRK05707 241 -LLLLFDWFCDWAHDILRYQLTQdEEGLGLADMRKVLQYLAQKSPQAKVLALQDWLLEQRQKVLGKANLNRQLLLEALL 318
DNA_pol3_delta2 pfam13177
DNA polymerase III, delta subunit; DNA polymerase III, delta subunit (EC 2.7.7.7) is required ...
 6-160 1.20e-43

DNA polymerase III, delta subunit; DNA polymerase III, delta subunit (EC 2.7.7.7) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalyzed reaction. The delta subunit is also known as HolA.


Pssm-ID: 433013 [Multi-domain]  Cd Length: 161  Bit Score: 147.36  E-value: 1.20e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33149138     6 WLEQHYQQLTATFSNGRGHHALLFKSDVGLGTEKLIAQFAAWLLCQTPKQGHACDQCKSCLLLKNGNHPDLHILESiDGK 85
Cdd:pfam13177   1 GQPEAIQLLQNSLENGRLSHAYLFSGPEGVGKLELALAFAKALFCEEPGDDLPCGQCRSCRRIESGNHPDLVIIEP-EGQ 79

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 33149138    86 DIGIEQIRETNTKLQNFAQQGGNTVVYIKNAECLTAASGNALLKTLEEPNDKVYFLLAAPQQTAILPTIASRCQT 160
Cdd:pfam13177  80 SIKIDQIRELQKEFSKSPYEGKKKVYIIEDAEKMTASAANSLLKFLEEPPGNTVIILLTENPSRLLPTIRSRCQI 154
DnaX COG2812
DNA polymerase III, gamma/tau subunits [Replication, recombination and repair];
12-323 1.73e-43

DNA polymerase III, gamma/tau subunits [Replication, recombination and repair];


Pssm-ID: 442061 [Multi-domain]  Cd Length: 340  Bit Score: 152.27  E-value: 1.73e-43
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33149138  12 QQLTATFSNGRGHHALLFksdVGL-GTEKL-IAQ-FAAWLLCQTPKQGHACDQCKSCLLLKNGNHPDLHILESiDGKDIG 88
Cdd:COG2812  20 RTLKNALASGRLAHAYLF---TGPrGVGKTtLARiLAKALNCENGPTGEPCGECESCRAIAAGSHPDVIEIDA-EASNIG 95

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33149138  89 IEQIRETNTKLQNFAQQGGNTVVYIKNAECLTAASGNALLKTLEEPNDKVYFLLAAPQQTAILPTIASRCQTWLIHSPEM 168
Cdd:COG2812  96 VDDIRELIEKVSYAPVEGRYKVYIIDEAHMLTTEAFNALLKTLEEPPPHVVFILATTEPQKLLPTILSRCQRFDFRRLPP 175

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33149138 169 ALTLAWLQAQA----PTATREACEIAMRLCHQRPLICKTFLEKD---RLTARKTFLRTFWRFFNNRD---VFLLFSQFDK 238
Cdd:COG2812 176 EEIAEHLAKIAeregIEIEPEALALIARAADGSMRDALSLLDQAiafGLLDRRELLLDLLEALLAGDvaaLLALAEELAK 255

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33149138 239 EKALILEQLEWLESFFSDSIKAKLAIT-NGWINHDLHNGILQFSQQLDIKRLLIGHQLIQQTKWDLLAvnAINQELILLA 317
Cdd:COG2812 256 RGRDLKRFLDDLLSLLRDLLLLKLGPDaELLVNEDERERLQELARRLSPERLLRAIQILLEARRELER--NVNPRLALEM 333


                ....*.
gi 33149138 318 CLTKLT 323
Cdd:COG2812 334 LLLRLA 339
PRK08699 PRK08699
DNA polymerase III subunit delta'; Validated
 3-256 3.34e-35

DNA polymerase III subunit delta'; Validated


Pssm-ID: 181538 [Multi-domain]  Cd Length: 325  Bit Score: 130.38  E-value: 3.34e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33149138    3 LYPWLEQHYQQLTATFSngRGHHALLFKSDVGLGTEKLiAQFAAW-LLCQTPKQGHA-CDQCKSCLLLKNGNHPDLHIL- 79
Cdd:PRK08699   2 IYPWHQEQWRQIAEHWE--RRPNAWLFAGKKGIGKTAF-ARFAAQaLLCETPAPGHKpCGECMSCHLFGQGSHPDFYEIt 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33149138   80 ----ESIDGK---DIGIEQIRETNTKLQNFAQQGGNTVVYIKNAECLTAASGNALLKTLEEPNDKVYFLLAAPQQTAILP 152
Cdd:PRK08699  79 plsdEPENGRkllQIKIDAVREIIDNVYLTSVRGGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLP 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33149138  153 TIASRCQTWLIHSPEMALTLAWLQAQAptatreACEIAMRLCHQ--RPLicktFLEKDRLTA-RKTFLRTFW--RFFNNR 227
Cdd:PRK08699 159 TIKSRCRKMVLPAPSHEEALAYLRERG------VAEPEERLAFHsgAPL----FDEEPELRAlRIKLLDILAepRLLKIL 228

                        250       260
                 ....*....|....*....|....*....
gi 33149138  228 DVFLLfsqFDKEKALILEQLEWLESFFSD 256
Cdd:PRK08699 229 DYAAL---FDKEKLPLAVFVGWMQKWLVD 254
PRK06964 PRK06964
DNA polymerase III subunit delta'; Validated
 3-178 3.57e-35

DNA polymerase III subunit delta'; Validated


Pssm-ID: 235898 [Multi-domain]  Cd Length: 342  Bit Score: 130.65  E-value: 3.57e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33149138    3 LYPWLEQHYQQLTATfsngRGH--HALLFKSDVGLGTEKLIAQFAAWLLCQTPK-QGHACDQCKSCLLLKNGNHPDLHIL 79
Cdd:PRK06964   2 LYPWQTDDWNRLQAL----RARlpHALLLHGQAGIGKLDFAQHLAQGLLCETPQpDGEPCGTCAACNWFAQGNHPDYRIV 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33149138   80 --ESIDG-------------------------KDIGIEQIRetntKLQNF----AQQGGNTVVYIKNAECLTAASGNALL 128
Cdd:PRK06964  78 rpEALAAeapgaadeakeadadeggkktkapsKEIKIEQVR----ALLDFcgvgTHRGGARVVVLYPAEALNVAAANALL 153

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|
gi 33149138  129 KTLEEPNDKVYFLLAAPQQTAILPTIASRCQTWLIHSPEMALTLAWLQAQ 178
Cdd:PRK06964 154 KTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQ 203
PRK08769 PRK08769
DNA polymerase III subunit delta'; Validated
 2-215 8.74e-29

DNA polymerase III subunit delta'; Validated


Pssm-ID: 181551 [Multi-domain]  Cd Length: 319  Bit Score: 112.74  E-value: 8.74e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33149138    2 ALYPWLEQHYQQLTATFSNGRGHHALLFKSDVGLGTEKLIAQFAAWLLCQTPKQGHACdqcKSCLLLKNGNHPDLHILES 81
Cdd:PRK08769   4 AFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQ---RTRQLIAAGTHPDLQLVSF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33149138   82 IDGK-------DIGIEQIRETNTKLQNFAQQGGNTVVYIKNAECLTAASGNALLKTLEEPNDKVYFLLAAPQQTAILPTI 154
Cdd:PRK08769  81 IPNRtgdklrtEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATI 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 33149138  155 ASRCQTWLIHSPEMALTLAWLQAQAPT--ATREACEIAmrlcHQRPLICKTFLEKDRLTARKT 215
Cdd:PRK08769 161 RSRCQRLEFKLPPAHEALAWLLAQGVSerAAQEALDAA----RGHPGLAAQWLREDGLALRRA 219
PRK08058 PRK08058
DNA polymerase III subunit delta'; Validated
 11-160 5.38e-26

DNA polymerase III subunit delta'; Validated


Pssm-ID: 181214 [Multi-domain]  Cd Length: 329  Bit Score: 105.39  E-value: 5.38e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33149138   11 YQQLTATFSNGRGHHALLFKSDVGLGTEKLIAQFAAWLLCQTPKQGHACDQCKSCLLLKNGNHPDLHILESiDGKDIGIE 90
Cdd:PRK08058  15 VKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVAP-DGQSIKKD 93

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33149138   91 QIRETNTKLQNFAQQGGNTVVYIKNAECLTAASGNALLKTLEEPNDKVYFLLAAPQQTAILPTIASRCQT 160
Cdd:PRK08058  94 QIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTILSRCQV 163
DNApol3-delta_C pfam09115
DNA polymerase III, delta subunit, C terminal; Members of this family, which are predominantly ...
 210-322 2.28e-25

DNA polymerase III, delta subunit, C terminal; Members of this family, which are predominantly found in prokaryotic DNA polymerase III, assume an alpha helical structure, with a core of five alpha helices, and an additional small helix. They are essential for the formation of the polymerase clamp loader.


Pssm-ID: 430418 [Multi-domain]  Cd Length: 112  Bit Score: 98.09  E-value: 2.28e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33149138   210 LTARKTFLRTF-WRFFNNRDVFLLFSQFDKEKALilEQLEWLESFFSDSIKAKLAITNGWINHDLHNGILQFSQQLDIKR 288
Cdd:pfam09115   1 WQARKALLQALvALALQRGDLLSLLPLLNKDDAL--VRLHWLSSLLLDALKYQQGVQDQLVNQDQIALIAQLAQRLSAER 78

                          90       100       110
                  ....*....|....*....|....*....|....
gi 33149138   289 LLIGHQLIQQTKWDLLAVNAINQELILLACLTKL 322
Cdd:pfam09115  79 LLAQLQKLLECREQLLSIPGVNRELLLTEWLLRW 112
PRK14963 PRK14963
DNA polymerase III subunits gamma and tau; Provisional
 14-193 3.14e-23

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184927 [Multi-domain]  Cd Length: 504  Bit Score: 99.91  E-value: 3.14e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33149138   14 LTATFSNGRGHHALLFKSDVGLG---TEKLIAQFAAwllCQTPKQgHACDQCKSCLLLKNGNHPDlhILEsIDG-KDIGI 89
Cdd:PRK14963  26 LLAALRQGRLGHAYLFSGPRGVGkttTARLIAMAVN---CSGEDP-KPCGECESCLAVRRGAHPD--VLE-IDAaSNNSV 98

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33149138   90 EQIRETNTKLQNFAQQGGNTVVYIKNAECLTAASGNALLKTLEEPNDKVYFLLAAPQQTAILPTIASRCQTW---LIHSP 166
Cdd:PRK14963  99 EDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRTQHFrfrRLTEE 178

                        170       180
                 ....*....|....*....|....*..
gi 33149138  167 EMALTLAWLqaqAPTATREACEIAMRL 193
Cdd:PRK14963 179 EIAGKLRRL---LEAEGREAEPEALQL 202
dnaX_nterm TIGR02397
DNA polymerase III, subunit gamma and tau; This model represents the well-conserved first ~ ...
 20-159 1.15e-21

DNA polymerase III, subunit gamma and tau; This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis. [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 274111 [Multi-domain]  Cd Length: 355  Bit Score: 93.79  E-value: 1.15e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33149138    20 NGRGHHALLFKsdvGL-GTEKL-IAQ-FAAWLLCQTPKQGHACDQCKSCLLLKNGNHPDlhILEsIDG-KDIGIEQIRET 95
Cdd:TIGR02397  32 NGRIAHAYLFS---GPrGTGKTsIARiFAKALNCQNGPDGEPCNECESCKEINSGSSLD--VIE-IDAaSNNGVDDIREI 105

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 33149138    96 NTKLQnFAQQGGNTVVYIKNaEC--LTAASGNALLKTLEEPNDKVYFLLAAPQQTAILPTIASRCQ 159
Cdd:TIGR02397 106 LDNVK-YAPSSGKYKVYIID-EVhmLSKSAFNALLKTLEEPPEHVVFILATTEPHKIPATILSRCQ 169
PRK14953 PRK14953
DNA polymerase III subunits gamma and tau; Provisional
 18-175 1.29e-21

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237867 [Multi-domain]  Cd Length: 486  Bit Score: 94.89  E-value: 1.29e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33149138   18 FSNGRGHHALLFKSDVGLGTEKLIAQFAAWLLCQTPKQGHACDQCKSCLLLKNGNHPDLHILESIDGKdiGIEQIRETNT 97
Cdd:PRK14953  32 VKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEIDAASNR--GIDDIRALRD 109

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 33149138   98 KLqNFAQQGGNTVVYI-KNAECLTAASGNALLKTLEEPNDKVYFLLAAPQQTAILPTIASRCQTWLIHSPEMALTLAWL 175
Cdd:PRK14953 110 AV-SYTPIKGKYKVYIiDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYL 187
PRK07940 PRK07940
DNA polymerase III subunit delta'; Validated
 25-166 1.87e-21

DNA polymerase III subunit delta'; Validated


Pssm-ID: 236134 [Multi-domain]  Cd Length: 394  Bit Score: 93.82  E-value: 1.87e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33149138   25 HALLFKSDVGLGTEKLIAQFAAWLLCQTPkQGHACDQCKSCLLLKNGNHPDLHILESiDGKDIGIEQIRETNTKLQNFAQ 104
Cdd:PRK07940  37 HAWLFTGPPGSGRSVAARAFAAALQCTDP-DEPGCGECRACRTVLAGTHPDVRVVAP-EGLSIGVDEVRELVTIAARRPS 114

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 33149138  105 QGGNTVVYIKNAECLTAASGNALLKTLEEPNDKVYFLLAAPQQTAILPTIASRCQTWLIHSP 166
Cdd:PRK07940 115 TGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTP 176
PRK14956 PRK14956
DNA polymerase III subunits gamma and tau; Provisional
 14-159 9.76e-21

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184920 [Multi-domain]  Cd Length: 484  Bit Score: 92.32  E-value: 9.76e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33149138   14 LTATFSNGRGHHALLFKSDVGLGTEKLIAQFAAWLLCQTPKQGHACDQCKSCLLLKNGNHPDlhILESIDGKDIGIEQIR 93
Cdd:PRK14956  30 LQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGISSD--VLEIDAASNRGIENIR 107

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 33149138   94 ETNTKLQnFAQQGGNTVVYI-KNAECLTAASGNALLKTLEEPNDKVYFLLAAPQQTAILPTIASRCQ 159
Cdd:PRK14956 108 ELRDNVK-FAPMGGKYKVYIiDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRCQ 173
PRK07276 PRK07276
DNA polymerase III subunit delta'; Validated
 1-179 3.76e-20

DNA polymerase III subunit delta'; Validated


Pssm-ID: 180916 [Multi-domain]  Cd Length: 290  Bit Score: 88.54  E-value: 3.76e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33149138    1 MALYPWLEQHYQQLTATFSNGRGHHALLFKSDVGlgtEKLIAQF-AAWLLCQTPKQGHACDQCKSCLLLKNGNHPDLHIL 79
Cdd:PRK07276   1 MDLKQKQPKVFQRFQTILEQDRLNHAYLFSGDFA---SFEMALFlAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVI 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33149138   80 ESiDGKDIGIEQIRETntkLQNFAQQG--GNTVVYI-KNAECLTAASGNALLKTLEEPNDKVYFLLAAPQQTAILPTIAS 156
Cdd:PRK07276  78 EP-QGQVIKTDTIREL---VKNFSQSGyeGKQQVFIiKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKS 153

                        170       180
                 ....*....|....*....|...
gi 33149138  157 RCQtwLIHSPEmalTLAWLQAQA 179
Cdd:PRK07276 154 RTQ--IFHFPK---NEAYLIQLL 171
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 12-178 2.05e-19

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 88.71  E-value: 2.05e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33149138   12 QQLTATFSNGRGHHALLFKSDVGLGTEKLIAQFAAWLLCQTPK-QGHACDQCKSCLLLKNGNHPDlhILESIDGKDIGIE 90
Cdd:PRK14950  26 QTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDpKGRPCGTCEMCRAIAEGSAVD--VIEMDAASHTSVD 103

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33149138   91 QIRETNTKLQnFAQQGGNTVVY-IKNAECLTAASGNALLKTLEEPNDKVYFLLAAPQQTAILPTIASRCQTWLIHS---P 166
Cdd:PRK14950 104 DAREIIERVQ-FRPALARYKVYiIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATILSRCQRFDFHRhsvA 182

                        170
                 ....*....|..
gi 33149138  167 EMALTLAWLQAQ 178
Cdd:PRK14950 183 DMAAHLRKIAAA 194
PRK14962 PRK14962
DNA polymerase III subunits gamma and tau; Provisional
 14-159 3.10e-19

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237869 [Multi-domain]  Cd Length: 472  Bit Score: 87.90  E-value: 3.10e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33149138   14 LTATFSNGRGHHALLFKSDVGLGTEKLIAQFAAWLLCQTPKQGHACDQCKSCLLLKNGNHPDlhILESIDGKDIGIEQIR 93
Cdd:PRK14962  26 IINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMD--VIELDAASNRGIDEIR 103

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 33149138   94 ETNTKLQNFAQQGGNTVVYIKNAECLTAASGNALLKTLEEPNDKVYFLLAAPQQTAILPTIASRCQ 159
Cdd:PRK14962 104 KIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIISRCQ 169
PRK14971 PRK14971
DNA polymerase III subunit gamma/tau;
12-159 1.09e-18

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237874 [Multi-domain]  Cd Length: 614  Bit Score: 86.75  E-value: 1.09e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33149138   12 QQLTATFSN----GRGHHALLFKSDVGLGTEKLIAQFAAWLLCQTP-KQGHACDQCKSCLLLKNGNHPDLHILE-----S 81
Cdd:PRK14971  23 EALTTTLKNaiatNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLtADGEACNECESCVAFNEQRSYNIHELDaasnnS 102

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33149138   82 IDgkDIG--IEQIRetntklqnFAQQGGNTVVYI-KNAECLTAASGNALLKTLEEPNDKVYFLLAAPQQTAILPTIASRC 158
Cdd:PRK14971 103 VD--DIRnlIEQVR--------IPPQIGKYKIYIiDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSRC 172


                 .
gi 33149138  159 Q 159
Cdd:PRK14971 173 Q 173
PRK06305 PRK06305
DNA polymerase III subunits gamma and tau; Validated
 22-159 1.24e-18

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 180523 [Multi-domain]  Cd Length: 451  Bit Score: 85.98  E-value: 1.24e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33149138   22 RGHHALLFKSDVGLGTEKLIAQFAAWLLCQTPKQGH-ACDQCKSCLLLKNGNhpDLHILEsIDG-KDIGIEQIRETNTKL 99
Cdd:PRK06305  37 RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQePCNQCASCKEISSGT--SLDVLE-IDGaSHRGIEDIRQINETV 113

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 33149138  100 QNFAQQGGNTVVYIKNAECLTAASGNALLKTLEEPNDKVYFLLAAPQQTAILPTIASRCQ 159
Cdd:PRK06305 114 LFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPGTILSRCQ 173
PRK07399 PRK07399
DNA polymerase III subunit delta'; Validated
 14-159 2.08e-18

DNA polymerase III subunit delta'; Validated


Pssm-ID: 236011 [Multi-domain]  Cd Length: 314  Bit Score: 84.18  E-value: 2.08e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33149138   14 LTATFSNGRGHHALLFKSDVGLGtEKLIA-QFAAWLLCQTPKQghACDQCKscllLKNGNHPDLHILE--------SIDG 84
Cdd:PRK07399  16 LTAAIKQNRIAPAYLFAGPEGVG-RKLAAlCFIEGLLSQGSPS--KNIRRR----LEEGNHPDLLWVEptyqhqgkLITA 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33149138   85 KD-------------IGIEQIRETNTKLQNFAQQGGNTVVYIKNAECLTAASGNALLKTLEEPNDKVyFLLAAPQQTAIL 151
Cdd:PRK07399  89 SEaeeaglkrkappqIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPGNGT-LILIAPSPESLL 167


                 ....*...
gi 33149138  152 PTIASRCQ 159
Cdd:PRK07399 168 PTIVSRCQ 175
PRK07471 PRK07471
DNA polymerase III subunit delta'; Validated
 12-190 2.27e-18

DNA polymerase III subunit delta'; Validated


Pssm-ID: 236022 [Multi-domain]  Cd Length: 365  Bit Score: 84.70  E-value: 2.27e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33149138   12 QQLTATFSNGRGHHALLFKSDVGLGTEKLIAQFAAWLLCQTPKQGHACDQCKSCLLL----------KNGNHPDLHILE- 80
Cdd:PRK07471  29 AALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIdpdhpvarriAAGAHGGLLTLEr 108

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33149138   81 SIDGK------DIGIEQIRETNTKLQNFAQQGGNTVVYIKNAECLTAASGNALLKTLEEPNDKVYFLLAAPQQTAILPTI 154
Cdd:PRK07471 109 SWNEKgkrlrtVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARSLFLLVSHAPARLLPTI 188

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|.
gi 33149138  155 ASRCQTWLIH--SPE---MALTLAwLQAQAPTATREACEIA 190
Cdd:PRK07471 189 RSRCRKLRLRplAPEdviDALAAA-GPDLPDDPRAALAALA 228
PRK08691 PRK08691
DNA polymerase III subunits gamma and tau; Validated
 8-158 5.88e-18

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236333 [Multi-domain]  Cd Length: 709  Bit Score: 84.76  E-value: 5.88e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33149138    8 EQHYQQLTATFSNGRGHHALLFKSDVGLGTEKLIAQFAAWLLCQTPKQGHACDQCKSCLLLKNGNHPDLhiLESIDGKDI 87
Cdd:PRK08691  22 EHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDL--LEIDAASNT 99

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 33149138   88 GIEQIRETntkLQN--FAQQGGNTVVYI-KNAECLTAASGNALLKTLEEPNDKVYFLLAA--PQQTAIlpTIASRC 158
Cdd:PRK08691 100 GIDNIREV---LENaqYAPTAGKYKVYIiDEVHMLSKSAFNAMLKTLEEPPEHVKFILATtdPHKVPV--TVLSRC 170
PRK14957 PRK14957
DNA polymerase III subunits gamma and tau; Provisional
 8-158 2.24e-17

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184921 [Multi-domain]  Cd Length: 546  Bit Score: 82.82  E-value: 2.24e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33149138    8 EQH-YQQLTATFSNGRGHHALLFKSDVGLGTEKLIAQFAAWLLCQTPKQGHACDQCKSCLLLKNGNHPDLhiLESIDGKD 86
Cdd:PRK14957  21 QQHaLNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDL--IEIDAASR 98

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 33149138   87 IGIEQIRETNTKLQNFAQQGGNTVVYIKNAECLTAASGNALLKTLEEPNDKVYFLLAAPQQTAILPTIASRC 158
Cdd:PRK14957  99 TGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRC 170
PRK14959 PRK14959
DNA polymerase III subunits gamma and tau; Provisional
 26-197 9.28e-17

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184923 [Multi-domain]  Cd Length: 624  Bit Score: 80.88  E-value: 9.28e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33149138   26 ALLFKSDVGLGTEKLIAQFAAWLLCQTPKQGHACDQCKSCLLLKNGNHPDlhILEsIDG-KDIGIEQIRETNTKLQNFAQ 104
Cdd:PRK14959  40 AYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVD--VVE-IDGaSNRGIDDAKRLKEAIGYAPM 116

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33149138  105 QGGNTVVYIKNAECLTAASGNALLKTLEEPNDKVYFLLAAPQQTAILPTIASRCQtwliHSPEMALTLAWLQAQ-APTAT 183
Cdd:PRK14959 117 EGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIVSRCQ----HFTFTRLSEAGLEAHlTKVLG 192

                        170
                 ....*....|....*..
gi 33149138  184 REACEI---AMRLCHQR 197
Cdd:PRK14959 193 REGVDYdpaAVRLIARR 209
PRK14960 PRK14960
DNA polymerase III subunit gamma/tau;
14-158 2.00e-15

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237868 [Multi-domain]  Cd Length: 702  Bit Score: 77.01  E-value: 2.00e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33149138   14 LTATFSNGRGHHALLFKSDVGLGTEKLIAQFAAWLLCQTPKQGHACDQCKSCLLLKNGNHPDLhiLESIDGKDIGIEQIR 93
Cdd:PRK14960  27 LSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDL--IEIDAASRTKVEDTR 104

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 33149138   94 ETNTKLQNFAQQGGNTVVYIKNAECLTAASGNALLKTLEEPNDKVYFLLAA--PQQTAIlpTIASRC 158
Cdd:PRK14960 105 ELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATtdPQKLPI--TVISRC 169
PRK09112 PRK09112
DNA polymerase III subunit delta'; Validated
 14-159 2.50e-15

DNA polymerase III subunit delta'; Validated


Pssm-ID: 169667 [Multi-domain]  Cd Length: 351  Bit Score: 75.84  E-value: 2.50e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33149138   14 LTATFSNGRGHHALLFKSDVGLGTEKLIAQFAAWLLC----QTPKQGHACDQCKSCL--LLKNGNHPD-LHILESIDGKD 86
Cdd:PRK09112  35 LAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILShpdpAEAPETLADPDPASPVwrQIAQGAHPNlLHITRPFDEKT 114

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 33149138   87 ------IGIEQIRETNTKLQNFAQQGGNTVVYIKNAECLTAASGNALLKTLEEPNDKVYFLLAAPQQTAILPTIASRCQ 159
Cdd:PRK09112 115 gkfktaITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILISHSSGRLLPTIRSRCQ 193
PRK05564 PRK05564
DNA polymerase III subunit delta'; Validated
 19-161 3.42e-14

DNA polymerase III subunit delta'; Validated


Pssm-ID: 180132 [Multi-domain]  Cd Length: 313  Bit Score: 71.99  E-value: 3.42e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33149138   19 SNGRGHHALLFKSDVGLGTEKLIAQFAAWLLCQTPKQGHAcdqcksclllkngnhpDLHILESIDGKDIGIEQIRETNTK 98
Cdd:PRK05564  21 IKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYV----------------DIIEFKPINKKSIGVDDIRNIIEE 84

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 33149138   99 LQNFAQQGGNTVVYIKNAECLTAASGNALLKTLEEPNDKVYFLLAAPQQTAILPTIASRCQTW 161
Cdd:PRK05564  85 VNKKPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIY 147
PRK05896 PRK05896
DNA polymerase III subunits gamma and tau; Validated
 25-161 3.93e-14

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 235638 [Multi-domain]  Cd Length: 605  Bit Score: 72.96  E-value: 3.93e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33149138   25 HALLFKSDVGLGTEKLIAQFAAWLLCQTPKQGHACDQCKSCLLLKNGNHPDLHILESidGKDIGIEQIRETNTKLQNFAQ 104
Cdd:PRK05896  39 HAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVDIVELDA--ASNNGVDEIRNIIDNINYLPT 116

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 33149138  105 QGGNTVVYIKNAECLTAASGNALLKTLEEPNDKVYFLLAAPQQTAILPTIASRCQTW 161
Cdd:PRK05896 117 TFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTIISRCQRY 173
PRK14969 PRK14969
DNA polymerase III subunits gamma and tau; Provisional
 14-158 7.31e-14

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237873 [Multi-domain]  Cd Length: 527  Bit Score: 72.09  E-value: 7.31e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33149138   14 LTATFSNGRGHHALLFKSDVGLGTEKLIAQFAAWLLCQTPKQGHACDQCKSCLLLKNGNHPDLhiLESIDGKDIGIEQIR 93
Cdd:PRK14969  28 LTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDL--IEVDAASNTQVDAMR 105

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33149138   94 ETntkLQN--FAQQGGNTVVY-IKNAECLTAASGNALLKTLEEPNDKVYFLLAA--PQQTAIlpTIASRC 158
Cdd:PRK14969 106 EL---LDNaqYAPTRGRFKVYiIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATtdPQKIPV--TVLSRC 170
PRK14958 PRK14958
DNA polymerase III subunits gamma and tau; Provisional
 24-158 2.74e-12

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184922 [Multi-domain]  Cd Length: 509  Bit Score: 67.45  E-value: 2.74e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33149138   24 HHALLFKSDVGLGTEKLIAQFAAWLLCQTPKQGHACDQCKSCLLLKNGNHPDLHILESidGKDIGIEQIRETNTKLQNFA 103
Cdd:PRK14958  38 HHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEVDA--ASRTKVEDTRELLDNIPYAP 115

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 33149138  104 QQGGNTVVYIKNAECLTAASGNALLKTLEEPNDKVYFLLAAPQQTAILPTIASRC 158
Cdd:PRK14958 116 TKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVLSRC 170
PRK14949 PRK14949
DNA polymerase III subunits gamma and tau; Provisional
 14-158 3.48e-12

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237863 [Multi-domain]  Cd Length: 944  Bit Score: 67.44  E-value: 3.48e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33149138   14 LTATFSNGRGHHALLFKSDVGLGTEKLIAQFAAWLLCQTPKQGHACDQCKSCLLLKNGNHPDLhilesidgkdigIEQIR 93
Cdd:PRK14949  28 LTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDL------------IEVDA 95

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 33149138   94 ETNTK-------LQN--FAQQGGNTVVY-IKNAECLTAASGNALLKTLEEPNDKVYFLLAA--PQQtaiLP-TIASRC 158
Cdd:PRK14949  96 ASRTKvddtrelLDNvqYRPSRGRFKVYlIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATtdPQK---LPvTVLSRC 170
PRK06647 PRK06647
DNA polymerase III subunits gamma and tau; Validated
 14-159 3.58e-12

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 235845 [Multi-domain]  Cd Length: 563  Bit Score: 67.10  E-value: 3.58e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33149138   14 LTATFSNGRGHHALLFKSDVGLGTEKLIAQFAAWLLCQTPKQGHACDQCKSCLLLKNGNhpDLHILEsIDG-KDIGIEQI 92
Cdd:PRK06647  28 LKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDN--SLDVIE-IDGaSNTSVQDV 104

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 33149138   93 RETNTKLQnFAQQGGNTVVYI-KNAECLTAASGNALLKTLEEPNDKVYFLLAAPQQTAILPTIASRCQ 159
Cdd:PRK06647 105 RQIKEEIM-FPPASSRYRVYIiDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIKSRCQ 171
PRK14961 PRK14961
DNA polymerase III subunits gamma and tau; Provisional
 14-158 3.62e-12

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184925 [Multi-domain]  Cd Length: 363  Bit Score: 66.37  E-value: 3.62e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33149138   14 LTATFSNGRGHHALLFKSDVGLGTEKLIAQFAAWLLCQTPKQGHACDQCKSCLLLKNGNHPDLHileSIDGKD-IGIEQI 92
Cdd:PRK14961  28 ISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLI---EIDAASrTKVEEM 104

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 33149138   93 RETNTKLQNFAQQGGNTVVYIKNAECLTAASGNALLKTLEEPNDKVYFLLAAPQQTAILPTIASRC 158
Cdd:PRK14961 105 REILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTILSRC 170
PRK07133 PRK07133
DNA polymerase III subunits gamma and tau; Validated
 12-159 4.70e-12

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 235943 [Multi-domain]  Cd Length: 725  Bit Score: 66.76  E-value: 4.70e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33149138   12 QQLTATFSNGRGHHALLFKSDVGLGTEKLIAQFAAWLLCQtpkqgHACDQ---CKSCLllKNGNHpDLHILEsIDG-KDI 87
Cdd:PRK07133  28 QTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCS-----HKTDLlepCQECI--ENVNN-SLDIIE-MDAaSNN 98

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 33149138   88 GIEQIRETNTKLQNFAQQGGNTVVYIKNAECLTAASGNALLKTLEEPNDKVYFLLAAPQQTAILPTIASRCQ 159
Cdd:PRK07133  99 GVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTILSRVQ 170
PRK14948 PRK14948
DNA polymerase III subunit gamma/tau;
44-159 5.13e-12

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237862 [Multi-domain]  Cd Length: 620  Bit Score: 66.52  E-value: 5.13e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33149138   44 FAAWLLCQ-----TPkqgHACDQCKSCLLLKNGNhpDLHILEsIDG-KDIGIEQIRETNTKLQnFAQQGGNTVVYIKNaE 117
Cdd:PRK14948  58 LAKSLNCLnsdkpTP---EPCGKCELCRAIAAGN--ALDVIE-IDAaSNTGVDNIRELIERAQ-FAPVQARWKVYVID-E 129

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 33149138  118 C--LTAASGNALLKTLEEPNDKVYFLLAA--PQQtaILPTIASRCQ 159
Cdd:PRK14948 130 ChmLSTAAFNALLKTLEEPPPRVVFVLATtdPQR--VLPTIISRCQ 173
PRK14965 PRK14965
DNA polymerase III subunits gamma and tau; Provisional
 6-159 5.14e-12

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237871 [Multi-domain]  Cd Length: 576  Bit Score: 66.69  E-value: 5.14e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33149138    6 WLEQHYQQLTA------TFSN----GRGHHALLFKSDVGLGTEKLIAQFAAWLLCQTPKQGHACDQCKSCLLLKNGNHPD 75
Cdd:PRK14965  10 YRPQTFSDLTGqehvsrTLQNaidtGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVD 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33149138   76 lhILEsIDG-KDIGIEQIRETNTKLQNFAQQGGNTVVYIKNAECLTAASGNALLKTLEEPNDKVYFLLAAPQQTAILPTI 154
Cdd:PRK14965  90 --VFE-IDGaSNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITI 166


                 ....*
gi 33149138  155 ASRCQ 159
Cdd:PRK14965 167 LSRCQ 171
PRK06645 PRK06645
DNA polymerase III subunits gamma and tau; Validated
 14-159 1.39e-11

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 180643 [Multi-domain]  Cd Length: 507  Bit Score: 65.27  E-value: 1.39e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33149138   14 LTATFSNGRGHHALLFKSDVGLG---TEKLIAQFAAWL-LCQTPKQGHACDQCKSCLLLKNGNHPDlhILESIDGKDIGI 89
Cdd:PRK06645  33 LSYTILNDRLAGGYLLTGIRGVGkttSARIIAKAVNCSaLITENTTIKTCEQCTNCISFNNHNHPD--IIEIDAASKTSV 110

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33149138   90 EQIRETNTKLQNFAQQGGNTVVYIKNAECLTAASGNALLKTLEEPNDKVYFLLAAPQQTAILPTIASRCQ 159
Cdd:PRK06645 111 DDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATIISRCQ 180
PRK14964 PRK14964
DNA polymerase III subunits gamma and tau; Provisional
 59-159 3.60e-11

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237870 [Multi-domain]  Cd Length: 491  Bit Score: 63.65  E-value: 3.60e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33149138   59 CDQCKSCLLLKNGNHPDlhILEsIDG-KDIGIEQIRetnTKLQN--FAQQGGNTVVYI-KNAECLTAASGNALLKTLEEP 134
Cdd:PRK14964  70 CGTCHNCISIKNSNHPD--VIE-IDAaSNTSVDDIK---VILENscYLPISSKFKVYIiDEVHMLSNSAFNALLKTLEEP 143

                         90       100
                 ....*....|....*....|....*
gi 33149138  135 NDKVYFLLAAPQQTAILPTIASRCQ 159
Cdd:PRK14964 144 APHVKFILATTEVKKIPVTIISRCQ 168
PRK14955 PRK14955
DNA polymerase III subunits gamma and tau; Provisional
 12-159 6.82e-11

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184919 [Multi-domain]  Cd Length: 397  Bit Score: 62.60  E-value: 6.82e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33149138   12 QQLTATFSN----GRGHHALLFKSDVGLGTEKLIAQFAAWLLCQT--------PKQGHACDQCKSCLLLKNGNhpDLHIL 79
Cdd:PRK14955  22 EHITRTIQNslrmGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRmiddadylQEVTEPCGECESCRDFDAGT--SLNIS 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33149138   80 ESIDGKDIGIEQIRETNTKLQNFAQQGGNTVVYIKNAECLTAASGNALLKTLEEPNDKVYFLLAAPQQTAILPTIASRCQ 159
Cdd:PRK14955 100 EFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQ 179
PRK08451 PRK08451
DNA polymerase III subunits gamma and tau; Validated
 12-159 1.19e-10

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236267 [Multi-domain]  Cd Length: 535  Bit Score: 62.36  E-value: 1.19e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33149138   12 QQLTATFSNGRGHHALLFKSDVGLGTEKLIAQFAAWLLCQTPKQGHACDQCKSCLLLKNGNHPDlhILESIDGKDIGIEQ 91
Cdd:PRK08451  24 KTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHID--IIEMDAASNRGIDD 101

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 33149138   92 IRE--TNTKLQ-NFAQQggnTVVYIKNAECLTAASGNALLKTLEEPNDKVYFLLAAPQQTAILPTIASRCQ 159
Cdd:PRK08451 102 IREliEQTKYKpSMARF---KIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATILSRTQ 169
PRK14952 PRK14952
DNA polymerase III subunits gamma/tau;
14-157 1.30e-10

DNA polymerase III subunits gamma/tau;


Pssm-ID: 237866 [Multi-domain]  Cd Length: 584  Bit Score: 62.20  E-value: 1.30e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33149138   14 LTATFSNGRGHHALLFKSDVGLGTEKLIAQFAAWLLCQTPKQGHACDQCKSCLLLKNGNHPDLHILESIDGKDIGIEQIR 93
Cdd:PRK14952  25 LSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSIDVVELDAASHGGVDDTR 104

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 33149138   94 ETNTKLQNFAQQGGNTVVYIKNAECLTAASGNALLKTLEEPNDKVYFLLAAPQQTAILPTIASR 157
Cdd:PRK14952 105 ELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSR 168
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
14-158 1.32e-10

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 62.20  E-value: 1.32e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33149138   14 LTATFSNGRGHHALLFKSDVGLGTEKLIAQFAAWLLCQTPK-QG----HACDQCKSCLLLKNGNHPDLhiLESIDGKDIG 88
Cdd:PRK12323  28 LTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADgEGgitaQPCGQCRACTEIDAGRFVDY--IEMDAASNRG 105

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 33149138   89 IEQIretnTKLQN---FAQQGGNTVVY-IKNAECLTAASGNALLKTLEEPNDKVYFLLAA--PQQtaILPTIASRC 158
Cdd:PRK12323 106 VDEM----AQLLDkavYAPTAGRFKVYmIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATtdPQK--IPVTVLSRC 175
PRK05818 PRK05818
DNA polymerase III subunit delta'; Validated
 25-167 1.46e-10

DNA polymerase III subunit delta'; Validated


Pssm-ID: 235618 [Multi-domain]  Cd Length: 261  Bit Score: 60.62  E-value: 1.46e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33149138   25 HALLFKSDVGLGTEKLIAQFAAWLLCQtpKQGHACDQCKSCLLLKNGNHPDLHILesIDGKD-IGIEQIRETNTKLQNFA 103
Cdd:PRK05818   8 HPLLLIERKGSFLKPFLYEYLTSIVCT--KANGFCKTCESCLKILNGKYNDFYLI--FDQKNpIKKEDALSIINKLNRPS 83

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 33149138  104 -QQGGNTVVYIKNAECLTAASGNALLKTLEEPNDKVYFLLAAPQQTAILPTIASRCQTWLIHSPE 167
Cdd:PRK05818  84 vESNGKKIYIIYGIEKLNKQSANSLLKLIEEPPKNTYGIFTTRNENNILNTILSRCVQYVVLSKE 148
PRK14954 PRK14954
DNA polymerase III subunits gamma and tau; Provisional
 12-159 1.76e-10

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184918 [Multi-domain]  Cd Length: 620  Bit Score: 61.88  E-value: 1.76e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33149138   12 QQLTATFSN----GRGHHALLFKSDVGLGTEKLIAQFAAWLLCQT--------PKQGHACDQCKSCLLLKNGNhpDLHIL 79
Cdd:PRK14954  22 EHITHTIQNslrmDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRmiddpvylQEVTEPCGECESCRDFDAGT--SLNIS 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33149138   80 ESIDGKDIGIEQIRETNTKLQNFAQQGGNTVVYIKNAECLTAASGNALLKTLEEPNDKVYFLLAAPQQTAILPTIASRCQ 159
Cdd:PRK14954 100 EFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQ 179
PRK07132 PRK07132
DNA polymerase III subunit delta'; Validated
 68-256 5.59e-10

DNA polymerase III subunit delta'; Validated


Pssm-ID: 180855 [Multi-domain]  Cd Length: 299  Bit Score: 59.35  E-value: 5.59e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33149138   68 LKNGNHPDLHILESIDGKDIGIEQIRETNTKL--QNFAQQGgNTVVYIKNAECLTAASGNALLKTLEEPNDKVYFLLAAP 145
Cdd:PRK07132  50 LNEQELPANIILFDIFDKDLSKSEFLSAINKLyfSSFVQSQ-KKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTK 128

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33149138  146 QQTAILPTIASRCQTWLIHSPEMALTLA------------WLQAQAPTATREAceiamrlchqrplicKTFLEKDRLTAR 213
Cdd:PRK07132 129 NINKVLPTIVSRCQVFNVKEPDQQKILAkllsknkekeynWFYAYIFSNFEQA---------------EKYINKESENLL 193

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*
gi 33149138  214 KTFLRTFWRFFNNRDVFLLF--SQFDKEKALILEQLewLESFFSD 256
Cdd:PRK07132 194 KKFEEALNKSLKEKYELILFlnKKLTKENALFLLKL--LKFFFKS 236
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
14-158 6.57e-10

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 60.25  E-value: 6.57e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33149138   14 LTATFSNGRGHHALLFKSDVGLGTEKLIAQFAAWLLCQTPKQGHACDQCKSCLLLKNGNHPDLhiLESIDGKDIGIEqir 93
Cdd:PRK07003  28 LTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDY--VEMDAASNRGVD--- 102

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 33149138   94 ETNTKLQN--FAQQGGNTVVY-IKNAECLTAASGNALLKTLEEPNDKVYFLLAAPQQTAILPTIASRC 158
Cdd:PRK07003 103 EMAALLERavYAPVDARFKVYmIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRC 170
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 19-158 2.85e-09

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 57.95  E-value: 2.85e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33149138   19 SNGRGHHALLFKSDVGLG--TeklIAQ-FAAWLLCQTPKQGHACDQCKSCLLLKNGNHPDLhiLEsIDGKD-IGIEQIRE 94
Cdd:PRK07994  33 DLGRLHHAYLFSGTRGVGktT---IARlLAKGLNCETGITATPCGECDNCREIEQGRFVDL--IE-IDAASrTKVEDTRE 106

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33149138   95 TntkLQN--FAQQGGNTVVY-IKNAECLTAASGNALLKTLEEPNDKVYFLLAA--PQQtaiLP-TIASRC 158
Cdd:PRK07994 107 L---LDNvqYAPARGRFKVYlIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATtdPQK---LPvTILSRC 170
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 12-158 5.00e-09

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 57.42  E-value: 5.00e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33149138   12 QQLTATFSNGRGHHALLFKSDVGLGTEKLIAQFAAWLLCQTPK-QG----HACDQCKSCLLLKNGNHPDLHILESIDGKd 86
Cdd:PRK14951  26 QALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDgQGgitaTPCGVCQACRDIDSGRFVDYTELDAASNR- 104

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33149138   87 iGIEQIRetntklQNFAQ------QGGNTVVYIKNAECLTAASGNALLKTLEEPNDKVYFLLAA--PQQTAIlpTIASRC 158
Cdd:PRK14951 105 -GVDEVQ------QLLEQavykpvQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATtdPQKVPV--TVLSRC 175
PRK14970 PRK14970
DNA polymerase III subunits gamma and tau; Provisional
 88-159 1.24e-08

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184934 [Multi-domain]  Cd Length: 367  Bit Score: 55.65  E-value: 1.24e-08
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 33149138   88 GIEQIRETNTKLQNFAQQGGNTVVYIKNAECLTAASGNALLKTLEEPNDKVYFLLAAPQQTAILPTIASRCQ 159
Cdd:PRK14970  89 SVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQ 160
PRK05563 PRK05563
DNA polymerase III subunits gamma and tau; Validated
 50-159 1.43e-08

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 235505 [Multi-domain]  Cd Length: 559  Bit Score: 56.03  E-value: 1.43e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33149138   50 CQTPKQGHACDQCKSCLLLKNGNHPDlhILEsID-GKDIGIEQIRETNTKLQnFAQQGGNTVVYIKNaEC--LTAASGNA 126
Cdd:PRK05563  64 CLNPPDGEPCNECEICKAITNGSLMD--VIE-IDaASNNGVDEIRDIRDKVK-YAPSEAKYKVYIID-EVhmLSTGAFNA 138

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 33149138  127 LLKTLEEPNDKVYFLLAA--PQQtaILPTIASRCQ 159
Cdd:PRK05563 139 LLKTLEEPPAHVIFILATtePHK--IPATILSRCQ 171
PRK06581 PRK06581
DNA polymerase III subunit delta'; Validated
 72-169 1.41e-06

DNA polymerase III subunit delta'; Validated


Pssm-ID: 235833 [Multi-domain]  Cd Length: 263  Bit Score: 48.69  E-value: 1.41e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33149138   72 NHPDLHILE-----SIDGKDIGIEQIRETNTKLQNFAQQGGNTVVYIKNAECLTAASGNALLKTLEEPNDKVYFLLAAPQ 146
Cdd:PRK06581  49 NNPDYHFIAretsaTSNAKNISIEQIRKLQDFLSKTSAISGYKVAIIYSAELMNLNAANSCLKILEDAPKNSYIFLITSR 128

                         90       100
                 ....*....|....*....|...
gi 33149138  147 QTAILPTIASRCQTWLIHSPEMA 169
Cdd:PRK06581 129 AASIISTIRSRCFKINVRSSILH 151
PRK09111 PRK09111
DNA polymerase III subunits gamma and tau; Validated
 14-159 5.54e-06

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236382 [Multi-domain]  Cd Length: 598  Bit Score: 47.97  E-value: 5.54e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33149138   14 LTATFSNGRGHHALLFKSDVGLG---TEKLIAQfaAwLLCQTP--KQG---HACDQCKSCLLLKNGNHPDlhILE----- 80
Cdd:PRK09111  36 LTNAFETGRIAQAFMLTGVRGVGkttTARILAR--A-LNYEGPdgDGGptiDLCGVGEHCQAIMEGRHVD--VLEmdaas 110

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33149138   81 --SIDgkDIG--IEQIRetntklqnFAQQGGNTVVYIKNaEC--LTAASGNALLKTLEEPNDKVYFLLAApqqTAI--LP 152
Cdd:PRK09111 111 htGVD--DIReiIESVR--------YRPVSARYKVYIID-EVhmLSTAAFNALLKTLEEPPPHVKFIFAT---TEIrkVP 176


                 ....*...
gi 33149138  153 -TIASRCQ 159
Cdd:PRK09111 177 vTVLSRCQ 184
PRK08485 PRK08485
DNA polymerase III subunit delta'; Validated
 125-173 1.04e-05

DNA polymerase III subunit delta'; Validated


Pssm-ID: 236274 [Multi-domain]  Cd Length: 206  Bit Score: 45.79  E-value: 1.04e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 33149138  125 NALLKTLEEPNDKVYFLLAAPQQTAILPTIASR--CQTWLIHSPEMALTLA 173
Cdd:PRK08485  72 NALLKILEEPPKNICFIIVAKSKNLLLPTIRSRliIEKRKQKKPVKPLDLD 122
PRK04132 PRK04132
replication factor C small subunit; Provisional
 88-158 1.06e-04

replication factor C small subunit; Provisional


Pssm-ID: 235223 [Multi-domain]  Cd Length: 846  Bit Score: 44.06  E-value: 1.06e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 33149138   88 GIEQIREtntKLQNFAQQ---GGNT--VVYIKNAECLTAASGNALLKTLEEPNDKVYFLLAAPQQTAILPTIASRC 158
Cdd:PRK04132 609 GINVIRE---KVKEFARTkpiGGASfkIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRC 681
PLN03025 PLN03025
replication factor C subunit; Provisional
 78-158 4.27e-03

replication factor C subunit; Provisional


Pssm-ID: 178596 [Multi-domain]  Cd Length: 319  Bit Score: 38.56  E-value: 4.27e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33149138   78 ILESIDGKDIGIEQIRetnTKLQNFAQQ------GGNTVVYIKNAECLTAASGNALLKTLEEPNDKVYFLLAAPQQTAIL 151
Cdd:PLN03025  67 VLELNASDDRGIDVVR---NKIKMFAQKkvtlppGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKII 143


                 ....*..
gi 33149138  152 PTIASRC 158
Cdd:PLN03025 144 EPIQSRC 150
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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