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Conserved domains on  [gi|35165160|gb|AAQ84109|]
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central open reading frame (endogenous virus) [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
HERV-K_REC super family cl24310
Rec (regulator of expression encoded by corf) of HERV-K-113; REC is a family of rec proteins ...
23-44 3.70e-03

Rec (regulator of expression encoded by corf) of HERV-K-113; REC is a family of rec proteins from the HERV-K viral polyprotein family. Rec is a functional homolog of Rev and Rex, and binds to an RNA element, the Rec-responsive element (RcRE), in the 3'LTR of HTDV/HERV-K transcripts. Thus Rec mediates nuclear export of RNA by binding to its responsive element, RcRE, present in a transcript. The human small glutamine-rich tetratricopeptide repeat-containing protein (hSGT) that controls mitotic processes and is a checkpoint protein during pro-metaphase is found to be a Rec-interacting partner.interferes with its role as a negative regulator of the androgen receptor, leading to enhanced androgen receptor activity. HERV-K(HML-2) elements benefit from this enhanced activity, as this leads to a vicious cycle that can result in increased cell proliferation, an inhibition of apoptosis, and eventually tumourigenesis.


The actual alignment was detected with superfamily member pfam15695:

Pssm-ID: 292323  Cd Length: 87  Bit Score: 32.53  E-value: 3.70e-03
                         10        20
                 ....*....|....*....|...
gi 35165160   23 LTHKMNKMVTS-EQMKLPSTKKS 44
Cdd:pfam15695  5 LTHKMNKMVTSeEQMKLPSTKKA 27
 
Name Accession Description Interval E-value
HERV-K_REC pfam15695
Rec (regulator of expression encoded by corf) of HERV-K-113; REC is a family of rec proteins ...
23-44 3.70e-03

Rec (regulator of expression encoded by corf) of HERV-K-113; REC is a family of rec proteins from the HERV-K viral polyprotein family. Rec is a functional homolog of Rev and Rex, and binds to an RNA element, the Rec-responsive element (RcRE), in the 3'LTR of HTDV/HERV-K transcripts. Thus Rec mediates nuclear export of RNA by binding to its responsive element, RcRE, present in a transcript. The human small glutamine-rich tetratricopeptide repeat-containing protein (hSGT) that controls mitotic processes and is a checkpoint protein during pro-metaphase is found to be a Rec-interacting partner.interferes with its role as a negative regulator of the androgen receptor, leading to enhanced androgen receptor activity. HERV-K(HML-2) elements benefit from this enhanced activity, as this leads to a vicious cycle that can result in increased cell proliferation, an inhibition of apoptosis, and eventually tumourigenesis.


Pssm-ID: 292323  Cd Length: 87  Bit Score: 32.53  E-value: 3.70e-03
                         10        20
                 ....*....|....*....|...
gi 35165160   23 LTHKMNKMVTS-EQMKLPSTKKS 44
Cdd:pfam15695  5 LTHKMNKMVTSeEQMKLPSTKKA 27
 
Name Accession Description Interval E-value
HERV-K_REC pfam15695
Rec (regulator of expression encoded by corf) of HERV-K-113; REC is a family of rec proteins ...
23-44 3.70e-03

Rec (regulator of expression encoded by corf) of HERV-K-113; REC is a family of rec proteins from the HERV-K viral polyprotein family. Rec is a functional homolog of Rev and Rex, and binds to an RNA element, the Rec-responsive element (RcRE), in the 3'LTR of HTDV/HERV-K transcripts. Thus Rec mediates nuclear export of RNA by binding to its responsive element, RcRE, present in a transcript. The human small glutamine-rich tetratricopeptide repeat-containing protein (hSGT) that controls mitotic processes and is a checkpoint protein during pro-metaphase is found to be a Rec-interacting partner.interferes with its role as a negative regulator of the androgen receptor, leading to enhanced androgen receptor activity. HERV-K(HML-2) elements benefit from this enhanced activity, as this leads to a vicious cycle that can result in increased cell proliferation, an inhibition of apoptosis, and eventually tumourigenesis.


Pssm-ID: 292323  Cd Length: 87  Bit Score: 32.53  E-value: 3.70e-03
                         10        20
                 ....*....|....*....|...
gi 35165160   23 LTHKMNKMVTS-EQMKLPSTKKS 44
Cdd:pfam15695  5 LTHKMNKMVTSeEQMKLPSTKKA 27
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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