NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|47503326|gb|AAT32002|]
View 

putative lipoprotein [Bacillus anthracis str. 'Ames Ancestor']

Protein Classification

YjgB family protein( domain architecture ID 10624461)

YjgB family protein is a DUF4309 domain-containing protein similar to Bacillus subtilis protein YjgB

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
DUF4309 pfam14172
Domain of unknown function (DUF4309); This family includes the B. subtilis YjgB protein, which ...
 76-202 1.69e-55

Domain of unknown function (DUF4309); This family includes the B. subtilis YjgB protein, which is functionally uncharacterized. This is not a homolog of E. coli YjgB. Expression of B. subtilis YjgB is regulated by the alternative transcription factor sigma-B. This family is found in bacteria, and is approximately 140 amino acids in length.


:

Pssm-ID: 464097  Cd Length: 130  Bit Score: 172.88  E-value: 1.69e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47503326    76 VKNLFELAKEGKVPNVPFAAHTGDIEEIEKAWGKADKTE--QAGNGMYATFTNKNVSFGFNKGSQVFDVRSYHAELKSIT 153
Cdd:pfam14172   1 LKNIYELALEGKVIGSDFAIGTTTIEDVEKKWGEPDKPEyvAAAKGYYATYGKPNVVFGYNKGGQIFEVRSFDKNLGGIT 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 47503326   154 LQEIEKALGKPN-SVKGNGEDKIYVYKVNKQFELKFIIPKSTGKVNHISV 202
Cdd:pfam14172  81 LKEVKKVLGTPNyDVTINGDEEIYGYKAGSDYKLLFVFPGPTDKVDHYSV 130
 
Name Accession Description Interval E-value
DUF4309 pfam14172
Domain of unknown function (DUF4309); This family includes the B. subtilis YjgB protein, which ...
 76-202 1.69e-55

Domain of unknown function (DUF4309); This family includes the B. subtilis YjgB protein, which is functionally uncharacterized. This is not a homolog of E. coli YjgB. Expression of B. subtilis YjgB is regulated by the alternative transcription factor sigma-B. This family is found in bacteria, and is approximately 140 amino acids in length.


Pssm-ID: 464097  Cd Length: 130  Bit Score: 172.88  E-value: 1.69e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47503326    76 VKNLFELAKEGKVPNVPFAAHTGDIEEIEKAWGKADKTE--QAGNGMYATFTNKNVSFGFNKGSQVFDVRSYHAELKSIT 153
Cdd:pfam14172   1 LKNIYELALEGKVIGSDFAIGTTTIEDVEKKWGEPDKPEyvAAAKGYYATYGKPNVVFGYNKGGQIFEVRSFDKNLGGIT 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 47503326   154 LQEIEKALGKPN-SVKGNGEDKIYVYKVNKQFELKFIIPKSTGKVNHISV 202
Cdd:pfam14172  81 LKEVKKVLGTPNyDVTINGDEEIYGYKAGSDYKLLFVFPGPTDKVDHYSV 130
 
Name Accession Description Interval E-value
DUF4309 pfam14172
Domain of unknown function (DUF4309); This family includes the B. subtilis YjgB protein, which ...
 76-202 1.69e-55

Domain of unknown function (DUF4309); This family includes the B. subtilis YjgB protein, which is functionally uncharacterized. This is not a homolog of E. coli YjgB. Expression of B. subtilis YjgB is regulated by the alternative transcription factor sigma-B. This family is found in bacteria, and is approximately 140 amino acids in length.


Pssm-ID: 464097  Cd Length: 130  Bit Score: 172.88  E-value: 1.69e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47503326    76 VKNLFELAKEGKVPNVPFAAHTGDIEEIEKAWGKADKTE--QAGNGMYATFTNKNVSFGFNKGSQVFDVRSYHAELKSIT 153
Cdd:pfam14172   1 LKNIYELALEGKVIGSDFAIGTTTIEDVEKKWGEPDKPEyvAAAKGYYATYGKPNVVFGYNKGGQIFEVRSFDKNLGGIT 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 47503326   154 LQEIEKALGKPN-SVKGNGEDKIYVYKVNKQFELKFIIPKSTGKVNHISV 202
Cdd:pfam14172  81 LKEVKKVLGTPNyDVTINGDEEIYGYKAGSDYKLLFVFPGPTDKVDHYSV 130
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH