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Conserved domains on  [gi|48994990|gb|AAT48234|]
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L-rhamnose isomerase [Escherichia coli str. K-12 substr. MG1655]

Protein Classification

L-rhamnose isomerase( domain architecture ID 10011618)

L-rhamnose isomerase catalyzes the formation of L-rhamnulose from L-rhamnose

Graphical summary

 Zoom to residue level

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List of domain hits

Name Accession Description Interval E-value
PRK01076 PRK01076
L-rhamnose isomerase; Provisional
1-419 0e+00

L-rhamnose isomerase; Provisional


:

Pssm-ID: 179217  Cd Length: 419  Bit Score: 920.48  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48994990    1 MTTQLEQAWELAKQRFAAVGIDVEEALRQLDRLPVSMHCWQGDDVSGFENPEGSLTGGIQATGNYPGKARNASELRADLE 80
Cdd:PRK01076   1 MTTQIEQAYELAKQRYAAVGVDVEAALRQLDRIPVSMHCWQGDDVTGFENPEGSLTGGIQATGNYPGKARNADELRADLE 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48994990   81 QAMRLIPGPKRLNLHAIYLESDTPVSRDQIKPEHFKNWVEWAKANQLGLDFNPSCFSHPLSADGFTLSHADDSIRQFWID 160
Cdd:PRK01076  81 KALSLIPGKHRLNLHAIYLESDTPVDRDEIEPEHFKNWVEWAKENGLGLDFNPTCFSHPLSADGFTLSHPDPEIRQFWIE 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48994990  161 HCKASRRVSAYFGEQLGTPSVMNIWIPDGMKDITVDRLAPRQRLLAALDEVISEKLNPAHHIDAVESKLFGIGAESYTVG 240
Cdd:PRK01076 161 HCKASRRISAYFGEELGTPCVMNIWIPDGMKDIPVDRLAPRQRLLESLDEIISEKLDPAHHIDAVESKLFGIGAESYTVG 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48994990  241 SNEFYMGYATSRQTALCLDAGHFHPTEVISDKISAAMLYVPQLLLHVSRPVRWDSDHVVLLDDETQAIASEIVRHDLFDR 320
Cdd:PRK01076 241 SHEFYMGYATSRQTALCLDAGHFHPTEVISDKISAAMLYVPRLLLHVSRPVRWDSDHVVLLDDETQAIASEIVRHDLLDR 320
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48994990  321 VHIGLDFFDASINRIAAWVIGTRNMKKALLRALLEPTAELRKLEAAGDYTARLALLEEQKSLPWQAVWEMYCQRHDTPAG 400
Cdd:PRK01076 321 VHIGLDFFDASINRIAAWVIGTRNMKKALLRALLEPTDQLRKLELEGDYTARLALLEEQKSLPWGAVWDMYCQRHDVPVG 400
                        410
                 ....*....|....*....
gi 48994990  401 SEWLESVRAYEKEILSRRG 419
Cdd:PRK01076 401 SDWLDEVREYEKEVLSKRG 419
 
Name Accession Description Interval E-value
PRK01076 PRK01076
L-rhamnose isomerase; Provisional
1-419 0e+00

L-rhamnose isomerase; Provisional


Pssm-ID: 179217  Cd Length: 419  Bit Score: 920.48  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48994990    1 MTTQLEQAWELAKQRFAAVGIDVEEALRQLDRLPVSMHCWQGDDVSGFENPEGSLTGGIQATGNYPGKARNASELRADLE 80
Cdd:PRK01076   1 MTTQIEQAYELAKQRYAAVGVDVEAALRQLDRIPVSMHCWQGDDVTGFENPEGSLTGGIQATGNYPGKARNADELRADLE 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48994990   81 QAMRLIPGPKRLNLHAIYLESDTPVSRDQIKPEHFKNWVEWAKANQLGLDFNPSCFSHPLSADGFTLSHADDSIRQFWID 160
Cdd:PRK01076  81 KALSLIPGKHRLNLHAIYLESDTPVDRDEIEPEHFKNWVEWAKENGLGLDFNPTCFSHPLSADGFTLSHPDPEIRQFWIE 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48994990  161 HCKASRRVSAYFGEQLGTPSVMNIWIPDGMKDITVDRLAPRQRLLAALDEVISEKLNPAHHIDAVESKLFGIGAESYTVG 240
Cdd:PRK01076 161 HCKASRRISAYFGEELGTPCVMNIWIPDGMKDIPVDRLAPRQRLLESLDEIISEKLDPAHHIDAVESKLFGIGAESYTVG 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48994990  241 SNEFYMGYATSRQTALCLDAGHFHPTEVISDKISAAMLYVPQLLLHVSRPVRWDSDHVVLLDDETQAIASEIVRHDLFDR 320
Cdd:PRK01076 241 SHEFYMGYATSRQTALCLDAGHFHPTEVISDKISAAMLYVPRLLLHVSRPVRWDSDHVVLLDDETQAIASEIVRHDLLDR 320
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48994990  321 VHIGLDFFDASINRIAAWVIGTRNMKKALLRALLEPTAELRKLEAAGDYTARLALLEEQKSLPWQAVWEMYCQRHDTPAG 400
Cdd:PRK01076 321 VHIGLDFFDASINRIAAWVIGTRNMKKALLRALLEPTDQLRKLELEGDYTARLALLEEQKSLPWGAVWDMYCQRHDVPVG 400
                        410
                 ....*....|....*....
gi 48994990  401 SEWLESVRAYEKEILSRRG 419
Cdd:PRK01076 401 SDWLDEVREYEKEVLSKRG 419
RhaA COG4806
L-rhamnose isomerase [Carbohydrate transport and metabolism];
1-419 0e+00

L-rhamnose isomerase [Carbohydrate transport and metabolism];


Pssm-ID: 443834  Cd Length: 420  Bit Score: 881.89  E-value: 0e+00
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48994990   1 MTTQLEQAWELAKQRFAAVGIDVEEALRQLDRLPVSMHCWQGDDVSGFENPEGSLTGGIQATGNYPGKARNASELRADLE 80
Cdd:COG4806   1 KEENIEKAYELAKERYAALGVDTEAALEKLAQIPISLHCWQGDDVGGFENPDGELSGGIQVTGNYPGKARTPDELRADLE 80
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48994990  81 QAMRLIPGPKRLNLHAIYLESD-TPVSRDQIKPEHFKNWVEWAKANQLGLDFNPSCFSHPLSADGFTLSHADDSIRQFWI 159
Cdd:COG4806  81 KALSLIPGKHRLNLHAIYAETDgEKVDRDEIEPKHFQSWVDWAKENGLGLDFNPTFFSHPKADDGFTLSHPDEEIRDFWI 160
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48994990 160 DHCKASRRVSAYFGEQLGTPSVMNIWIPDGMKDITVDRLAPRQRLLAALDEVISEKLNPAHHIDAVESKLFGIGAESYTV 239
Cdd:COG4806 161 EHGKACRRIAAYFGKELGTPCVTNIWIPDGSKDIPVDRLAPRERLKESLDEIFAEKIDKKYNLDAVESKLFGIGSESYTV 240
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48994990 240 GSNEFYMGYATSRQTALCLDAGHFHPTEVISDKISAAMLYVPQLLLHVSRPVRWDSDHVVLLDDETQAIASEIVRHDLFD 319
Cdd:COG4806 241 GSHEFYLGYAAKRNKLLCLDAGHFHPTESISDKISSVLLFVDELLLHVSRPVRWDSDHVVILDDELQAIAQEIVRNDALD 320
                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48994990 320 RVHIGLDFFDASINRIAAWVIGTRNMKKALLRALLEPTAELRKLEAAGDYTARLALLEEQKSLPWQAVWEMYCQRHDTPA 399
Cdd:COG4806 321 RVHIGLDFFDASINRIAAWVIGTRNMQKALLRALLEPTERLKELEEEGDFTERLALLEELKSLPFGAVWDYYCLRNGVPV 400
                       410       420
                ....*....|....*....|
gi 48994990 400 GSEWLESVRAYEKEILSRRG 419
Cdd:COG4806 401 GEDWLAEVKQYEKEVLSKRS 420
rhaA TIGR01748
L-rhamnose isomerase; This enzyme interconverts L-rhamnose and L-rhamnulose. In some species, ...
5-418 0e+00

L-rhamnose isomerase; This enzyme interconverts L-rhamnose and L-rhamnulose. In some species, including E. coli, this is the first step in rhamnose catabolism. Sequential steps are catalyzed by rhamnulose kinase (rhaB), then rhamnulose-1-phosphate aldolase (rhaD) to yield glycerone phosphate and (S)-lactaldehyde. Characterization of this family is based on members in E. coli and Salmonella. [Energy metabolism, Sugars]


Pssm-ID: 130809  Cd Length: 414  Bit Score: 837.24  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48994990     5 LEQAWELAKQRFAAVGIDVEEALRQLDRLPVSMHCWQGDDVSGFENPEGSLTGGIQATGNYPGKARNASELRADLEQAMR 84
Cdd:TIGR01748   1 IEQAYELAKQRYAAVGIDVEEALRQLDRLPISMHCWQGDDVSGFENPEGELTGGIQATGNYPGKARTPSELRADLEKAMS 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48994990    85 LIPGPKRLNLHAIYLESDTPVSRDQIKPEHFKNWVEWAKANQLGLDFNPSCFSHPLSADGFTLSHADDSIRQFWIDHCKA 164
Cdd:TIGR01748  81 LIPGKHRLNLHAIYLETDEPVSRDEIKPEHFKNWVEWAKANGLGLDFNPTCFSHPLSADGFTLSHPDDSIRQFWIDHCKA 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48994990   165 SRRVSAYFGEQLGTPSVMNIWIPDGMKDITVDRLAPRQRLLAALDEVISEKLNPAHHIDAVESKLFGIGAESYTVGSNEF 244
Cdd:TIGR01748 161 SRRISEYFGKELGTPSVMNIWIPDGMKDIPVDRLTPRKRLLEALDEVFSEKLNEAHHIDAVESKLFGLGAESYTVGSHEF 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48994990   245 YMGYATSRQTALCLDAGHFHPTEVISDKISAAMLYVPQLLLHVSRPVRWDSDHVVLLDDETQAIASEIVRHDLFDRVHIG 324
Cdd:TIGR01748 241 YMGYATTRQKLLCLDAGHFHPTEVISNKISSAMLYVPQLLLHVSRPVRWDSDHVVLLDDELQEIASEIVRNDLLDRVHIG 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48994990   325 LDFFDASINRIAAWVIGTRNMKKALLRALLEPTAELRKLEAAGDYTARLALLEEQKSLPWQAVWEMYCQRHDTPAGSEWL 404
Cdd:TIGR01748 321 LDFFDASINRIAAWVIGTRNMKKALLRALLEPTAELKKLEAEGDYTARLALLEEQKSLPFGAVWEMYCERHGVPVGSEWL 400
                         410
                  ....*....|....
gi 48994990   405 ESVRAYEKEILSRR 418
Cdd:TIGR01748 401 ESVKAYEKEVLLKR 414
RhaA pfam06134
L-rhamnose isomerase (RhaA); This family consists of several bacterial L-rhamnose isomerase ...
3-418 0e+00

L-rhamnose isomerase (RhaA); This family consists of several bacterial L-rhamnose isomerase proteins (EC:5.3.1.14).


Pssm-ID: 399262  Cd Length: 417  Bit Score: 821.01  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48994990     3 TQLEQAWELAKQRFAAVGIDVEEALRQLDRLPVSMHCWQGDDVSGFENPEGSLTGGIQATGNYPGKARNASELRADLEQA 82
Cdd:pfam06134   1 MQIKQNYELAKQRYEAWGIDVEEALRQLKQIPISIHCWQGDDVSGFENPKGELSGGIDVTGNYPGKATTPEELRADLEKA 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48994990    83 MRLIPGPKRLNLHAIYLESD-TPVSRDQIKPEHFKNWVEWAKANQLGLDFNPSCFSHPLSADGFTLSHADDSIRQFWIDH 161
Cdd:pfam06134  81 LSLIPGKHRVNLHAIYAETDgEAVERDEIEPKHFENWVEWAKENGLGLDFNPTLFSHPKAADGLTLAHPDKEIRQFWIDH 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48994990   162 CKASRRVSAYFGEQLGTPSVMNIWIPDGMKDITVDRLAPRQRLLAALDEVISEKLNPAHHIDAVESKLFGIGAESYTVGS 241
Cdd:pfam06134 161 CIASRKISEYFGKELGTPSLTNIWIPDGYKDIPSDRLTPRKRLKESLDEIFSEEINEAYNLDAVESKLFGIGSESYVVGS 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48994990   242 NEFYMGYATSRQTALCLDAGHFHPTEVISDKISAAMLYVPQLLLHVSRPVRWDSDHVVLLDDETQAIASEIVRHDLFDRV 321
Cdd:pfam06134 241 HEFYMGYALTNDKLCLLDTGHFHPTEVVSNKISSMLLYSDKLALHVSRPVRWDSDHVVILDDELREIALEIVRNDALDRV 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48994990   322 HIGLDFFDASINRIAAWVIGTRNMKKALLRALLEPTAELRKLEAAGDYTARLALLEEQKSLPWQAVWEMYCQRHDTPAGS 401
Cdd:pfam06134 321 HIGLDFFDASINRIAAWTIGTRNMIKALLYALLEPTAELKKLQEEGDYTARLALLEELKTYPFGAIWNYYCERMGVPVGE 400
                         410
                  ....*....|....*..
gi 48994990   402 EWLESVRAYEKEILSRR 418
Cdd:pfam06134 401 EWLKEVKAYEKEVLLKR 417
 
Name Accession Description Interval E-value
PRK01076 PRK01076
L-rhamnose isomerase; Provisional
1-419 0e+00

L-rhamnose isomerase; Provisional


Pssm-ID: 179217  Cd Length: 419  Bit Score: 920.48  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48994990    1 MTTQLEQAWELAKQRFAAVGIDVEEALRQLDRLPVSMHCWQGDDVSGFENPEGSLTGGIQATGNYPGKARNASELRADLE 80
Cdd:PRK01076   1 MTTQIEQAYELAKQRYAAVGVDVEAALRQLDRIPVSMHCWQGDDVTGFENPEGSLTGGIQATGNYPGKARNADELRADLE 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48994990   81 QAMRLIPGPKRLNLHAIYLESDTPVSRDQIKPEHFKNWVEWAKANQLGLDFNPSCFSHPLSADGFTLSHADDSIRQFWID 160
Cdd:PRK01076  81 KALSLIPGKHRLNLHAIYLESDTPVDRDEIEPEHFKNWVEWAKENGLGLDFNPTCFSHPLSADGFTLSHPDPEIRQFWIE 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48994990  161 HCKASRRVSAYFGEQLGTPSVMNIWIPDGMKDITVDRLAPRQRLLAALDEVISEKLNPAHHIDAVESKLFGIGAESYTVG 240
Cdd:PRK01076 161 HCKASRRISAYFGEELGTPCVMNIWIPDGMKDIPVDRLAPRQRLLESLDEIISEKLDPAHHIDAVESKLFGIGAESYTVG 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48994990  241 SNEFYMGYATSRQTALCLDAGHFHPTEVISDKISAAMLYVPQLLLHVSRPVRWDSDHVVLLDDETQAIASEIVRHDLFDR 320
Cdd:PRK01076 241 SHEFYMGYATSRQTALCLDAGHFHPTEVISDKISAAMLYVPRLLLHVSRPVRWDSDHVVLLDDETQAIASEIVRHDLLDR 320
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48994990  321 VHIGLDFFDASINRIAAWVIGTRNMKKALLRALLEPTAELRKLEAAGDYTARLALLEEQKSLPWQAVWEMYCQRHDTPAG 400
Cdd:PRK01076 321 VHIGLDFFDASINRIAAWVIGTRNMKKALLRALLEPTDQLRKLELEGDYTARLALLEEQKSLPWGAVWDMYCQRHDVPVG 400
                        410
                 ....*....|....*....
gi 48994990  401 SEWLESVRAYEKEILSRRG 419
Cdd:PRK01076 401 SDWLDEVREYEKEVLSKRG 419
RhaA COG4806
L-rhamnose isomerase [Carbohydrate transport and metabolism];
1-419 0e+00

L-rhamnose isomerase [Carbohydrate transport and metabolism];


Pssm-ID: 443834  Cd Length: 420  Bit Score: 881.89  E-value: 0e+00
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48994990   1 MTTQLEQAWELAKQRFAAVGIDVEEALRQLDRLPVSMHCWQGDDVSGFENPEGSLTGGIQATGNYPGKARNASELRADLE 80
Cdd:COG4806   1 KEENIEKAYELAKERYAALGVDTEAALEKLAQIPISLHCWQGDDVGGFENPDGELSGGIQVTGNYPGKARTPDELRADLE 80
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48994990  81 QAMRLIPGPKRLNLHAIYLESD-TPVSRDQIKPEHFKNWVEWAKANQLGLDFNPSCFSHPLSADGFTLSHADDSIRQFWI 159
Cdd:COG4806  81 KALSLIPGKHRLNLHAIYAETDgEKVDRDEIEPKHFQSWVDWAKENGLGLDFNPTFFSHPKADDGFTLSHPDEEIRDFWI 160
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48994990 160 DHCKASRRVSAYFGEQLGTPSVMNIWIPDGMKDITVDRLAPRQRLLAALDEVISEKLNPAHHIDAVESKLFGIGAESYTV 239
Cdd:COG4806 161 EHGKACRRIAAYFGKELGTPCVTNIWIPDGSKDIPVDRLAPRERLKESLDEIFAEKIDKKYNLDAVESKLFGIGSESYTV 240
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48994990 240 GSNEFYMGYATSRQTALCLDAGHFHPTEVISDKISAAMLYVPQLLLHVSRPVRWDSDHVVLLDDETQAIASEIVRHDLFD 319
Cdd:COG4806 241 GSHEFYLGYAAKRNKLLCLDAGHFHPTESISDKISSVLLFVDELLLHVSRPVRWDSDHVVILDDELQAIAQEIVRNDALD 320
                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48994990 320 RVHIGLDFFDASINRIAAWVIGTRNMKKALLRALLEPTAELRKLEAAGDYTARLALLEEQKSLPWQAVWEMYCQRHDTPA 399
Cdd:COG4806 321 RVHIGLDFFDASINRIAAWVIGTRNMQKALLRALLEPTERLKELEEEGDFTERLALLEELKSLPFGAVWDYYCLRNGVPV 400
                       410       420
                ....*....|....*....|
gi 48994990 400 GSEWLESVRAYEKEILSRRG 419
Cdd:COG4806 401 GEDWLAEVKQYEKEVLSKRS 420
rhaA TIGR01748
L-rhamnose isomerase; This enzyme interconverts L-rhamnose and L-rhamnulose. In some species, ...
5-418 0e+00

L-rhamnose isomerase; This enzyme interconverts L-rhamnose and L-rhamnulose. In some species, including E. coli, this is the first step in rhamnose catabolism. Sequential steps are catalyzed by rhamnulose kinase (rhaB), then rhamnulose-1-phosphate aldolase (rhaD) to yield glycerone phosphate and (S)-lactaldehyde. Characterization of this family is based on members in E. coli and Salmonella. [Energy metabolism, Sugars]


Pssm-ID: 130809  Cd Length: 414  Bit Score: 837.24  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48994990     5 LEQAWELAKQRFAAVGIDVEEALRQLDRLPVSMHCWQGDDVSGFENPEGSLTGGIQATGNYPGKARNASELRADLEQAMR 84
Cdd:TIGR01748   1 IEQAYELAKQRYAAVGIDVEEALRQLDRLPISMHCWQGDDVSGFENPEGELTGGIQATGNYPGKARTPSELRADLEKAMS 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48994990    85 LIPGPKRLNLHAIYLESDTPVSRDQIKPEHFKNWVEWAKANQLGLDFNPSCFSHPLSADGFTLSHADDSIRQFWIDHCKA 164
Cdd:TIGR01748  81 LIPGKHRLNLHAIYLETDEPVSRDEIKPEHFKNWVEWAKANGLGLDFNPTCFSHPLSADGFTLSHPDDSIRQFWIDHCKA 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48994990   165 SRRVSAYFGEQLGTPSVMNIWIPDGMKDITVDRLAPRQRLLAALDEVISEKLNPAHHIDAVESKLFGIGAESYTVGSNEF 244
Cdd:TIGR01748 161 SRRISEYFGKELGTPSVMNIWIPDGMKDIPVDRLTPRKRLLEALDEVFSEKLNEAHHIDAVESKLFGLGAESYTVGSHEF 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48994990   245 YMGYATSRQTALCLDAGHFHPTEVISDKISAAMLYVPQLLLHVSRPVRWDSDHVVLLDDETQAIASEIVRHDLFDRVHIG 324
Cdd:TIGR01748 241 YMGYATTRQKLLCLDAGHFHPTEVISNKISSAMLYVPQLLLHVSRPVRWDSDHVVLLDDELQEIASEIVRNDLLDRVHIG 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48994990   325 LDFFDASINRIAAWVIGTRNMKKALLRALLEPTAELRKLEAAGDYTARLALLEEQKSLPWQAVWEMYCQRHDTPAGSEWL 404
Cdd:TIGR01748 321 LDFFDASINRIAAWVIGTRNMKKALLRALLEPTAELKKLEAEGDYTARLALLEEQKSLPFGAVWEMYCERHGVPVGSEWL 400
                         410
                  ....*....|....
gi 48994990   405 ESVRAYEKEILSRR 418
Cdd:TIGR01748 401 ESVKAYEKEVLLKR 414
RhaA pfam06134
L-rhamnose isomerase (RhaA); This family consists of several bacterial L-rhamnose isomerase ...
3-418 0e+00

L-rhamnose isomerase (RhaA); This family consists of several bacterial L-rhamnose isomerase proteins (EC:5.3.1.14).


Pssm-ID: 399262  Cd Length: 417  Bit Score: 821.01  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48994990     3 TQLEQAWELAKQRFAAVGIDVEEALRQLDRLPVSMHCWQGDDVSGFENPEGSLTGGIQATGNYPGKARNASELRADLEQA 82
Cdd:pfam06134   1 MQIKQNYELAKQRYEAWGIDVEEALRQLKQIPISIHCWQGDDVSGFENPKGELSGGIDVTGNYPGKATTPEELRADLEKA 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48994990    83 MRLIPGPKRLNLHAIYLESD-TPVSRDQIKPEHFKNWVEWAKANQLGLDFNPSCFSHPLSADGFTLSHADDSIRQFWIDH 161
Cdd:pfam06134  81 LSLIPGKHRVNLHAIYAETDgEAVERDEIEPKHFENWVEWAKENGLGLDFNPTLFSHPKAADGLTLAHPDKEIRQFWIDH 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48994990   162 CKASRRVSAYFGEQLGTPSVMNIWIPDGMKDITVDRLAPRQRLLAALDEVISEKLNPAHHIDAVESKLFGIGAESYTVGS 241
Cdd:pfam06134 161 CIASRKISEYFGKELGTPSLTNIWIPDGYKDIPSDRLTPRKRLKESLDEIFSEEINEAYNLDAVESKLFGIGSESYVVGS 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48994990   242 NEFYMGYATSRQTALCLDAGHFHPTEVISDKISAAMLYVPQLLLHVSRPVRWDSDHVVLLDDETQAIASEIVRHDLFDRV 321
Cdd:pfam06134 241 HEFYMGYALTNDKLCLLDTGHFHPTEVVSNKISSMLLYSDKLALHVSRPVRWDSDHVVILDDELREIALEIVRNDALDRV 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48994990   322 HIGLDFFDASINRIAAWVIGTRNMKKALLRALLEPTAELRKLEAAGDYTARLALLEEQKSLPWQAVWEMYCQRHDTPAGS 401
Cdd:pfam06134 321 HIGLDFFDASINRIAAWTIGTRNMIKALLYALLEPTAELKKLQEEGDYTARLALLEELKTYPFGAIWNYYCERMGVPVGE 400
                         410
                  ....*....|....*..
gi 48994990   402 EWLESVRAYEKEILSRR 418
Cdd:pfam06134 401 EWLKEVKAYEKEVLLKR 417
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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