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Conserved domains on  [gi|53758275|gb|AAU92566|]
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general secretion pathway protein D [Methylococcus capsulatus str. Bath]

Protein Classification

type II secretion system protein D( domain architecture ID 11494410)

type II secretion system protein D is involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins

CATH:  3.30.1370.120|3.55.50.30
Gene Ontology:  GO:0009279|GO:0015627|GO:0015628
PubMed:  30767847
TCDB:  1.B.22.1.3

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
type_II_gspD TIGR02517
type II secretion system protein D; In Gram-negative bacteria, proteins that have first ...
 56-724 0e+00

type II secretion system protein D; In Gram-negative bacteria, proteins that have first crossed the inner member by Sec-dependent protein transport can be exported across the outer membrane by type II secretion, also called the main terminal branch of the general secretion pathway. Members of this family are general secretion pathway protein D. In Yersinia enterocolitica, a second member of this family is part of a novel second type II secretion system specifically associated with virulence (See ). This family is closely homologous to the type IV pilus outer membrane secretin PilQ (TIGR02515) and to the type III secretion system pore YscC/HrcC (TIGR02516). [Protein fate, Protein and peptide secretion and trafficking]


:

Pssm-ID: 274175 [Multi-domain]  Cd Length: 594  Bit Score: 587.82  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53758275    56 LNFDDADLSEVTKVIlGDTLKVNYVLSPKVTGKVSLQTTRPLTEDEMIPTLETLLRMNGAALIREGGMYKIEPDAQAAIS 135
Cdd:TIGR02517   1 LNFVDADISTVVKAI-SDLTGKNFIIDPRVKGKITIISPRPVTEDEAYQLFLSALRAQGFAVVPEGNGYKIVVPRAAAKL 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53758275   136 ASGP---GVGLGMMEPGYQLRVIPLRYISAAEMQKVLEPIMPPKAVLRMDETRNLVMVAGTAEELGGVMEAVQIFDVDYM 212
Cdd:TIGR02517  80 SPGPiedGPAPGVGGDQFVTRVFPLRNISASELVPVLRPLVSPNGDVAAYPPTNTIVVTDYASNINRVARIIQQLDVDGA 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53758275   213 rgMSVALYPVKNADVPTIADELTKVLGLGGKGAMGNVLRILPIERLNAILAVAPEMHLLHEVQDWIERLDrYNTTRTGNV 292
Cdd:TIGR02517 160 --GSVEVIPLKNASAVDIADVLNKLLGEGGKTDGGGKLSVIAPDRRNNILIRAGSPEALERIKKLISQLD-VPASEGGNV 236

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53758275   293 HVYRCQHVDAGELAHTLGGIFGGGAGRQGPSLAPGLTGMDVGSGISSAFGSASAtaggfggssagyggsggsfggsgssf 372
Cdd:TIGR02517 237 RVYYLRNADAEELAKTLQGVFGGGGNEPGSSSSPGLGGAVNPGGSQSAQAASSA-------------------------- 290

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53758275   373 gssgssgssmgsttgsmgtsgssgglgrsgsgglggsggglgtsggsfggarSGAGGQGASmtqlgnnarvvaDPANNAL 452
Cdd:TIGR02517 291 ----------------------------------------------------SGGSVSGSA------------DKATNSL 306

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53758275   453 IVIAKPQDWKEIEAVIKALDVLPLQVLIDATIVEISLKNDLQYGLKWLISS------GSSTEALGSPLAALVKDFINGA- 525
Cdd:TIGR02517 307 IITASPQDYKNIRAVIKQLDVRRAQVLVEAIIVEVSLDDALELGVQWLIAGtgggvnFSTGSPNSGSLLGASASAISLGs 386

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53758275   526 -------ASASGGFSYALIANGGNVKVLLNLLAQENLVNVISSPSLMVLNNQQAKINVGDQVPVLTGTTASATIGTTQFN 598
Cdd:TIGR02517 387 agigllvTSSSTTSGVGGTGGGPNLGVLLNALKQDTGFNVLSTPSLLTLDNQEAEINVGQEVPVLTGSYNTGTGGTNANP 466

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53758275   599 QFQQ--QQSGVTLQIRPRVNSGGLVSLEIFQAISTPSPVEVGSGQKTFQFANREIQSVVAVPNGQTLALGGLISDKRSET 676
Cdd:TIGR02517 467 FNTYqrKDVGIKLKVTPQINEGGTVRLEIYQEVSSVAPTTVGSAASGPTFNKREIKTVVLVDNGDTVVLGGLIQDKTSES 546

                         650       660       670       680
                  ....*....|....*....|....*....|....*....|....*...
gi 53758275   677 QTGLPYLNQIPMIGWMFGSTEIKPERTELVVLITPRVVEKKGDINSIS 724
Cdd:TIGR02517 547 VTKVPLLGDIPVLGWLFRSTTTERTKTNLMVFITPRIIRDPEDARALT 594
 
Name Accession Description Interval E-value
type_II_gspD TIGR02517
type II secretion system protein D; In Gram-negative bacteria, proteins that have first ...
 56-724 0e+00

type II secretion system protein D; In Gram-negative bacteria, proteins that have first crossed the inner member by Sec-dependent protein transport can be exported across the outer membrane by type II secretion, also called the main terminal branch of the general secretion pathway. Members of this family are general secretion pathway protein D. In Yersinia enterocolitica, a second member of this family is part of a novel second type II secretion system specifically associated with virulence (See ). This family is closely homologous to the type IV pilus outer membrane secretin PilQ (TIGR02515) and to the type III secretion system pore YscC/HrcC (TIGR02516). [Protein fate, Protein and peptide secretion and trafficking]


Pssm-ID: 274175 [Multi-domain]  Cd Length: 594  Bit Score: 587.82  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53758275    56 LNFDDADLSEVTKVIlGDTLKVNYVLSPKVTGKVSLQTTRPLTEDEMIPTLETLLRMNGAALIREGGMYKIEPDAQAAIS 135
Cdd:TIGR02517   1 LNFVDADISTVVKAI-SDLTGKNFIIDPRVKGKITIISPRPVTEDEAYQLFLSALRAQGFAVVPEGNGYKIVVPRAAAKL 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53758275   136 ASGP---GVGLGMMEPGYQLRVIPLRYISAAEMQKVLEPIMPPKAVLRMDETRNLVMVAGTAEELGGVMEAVQIFDVDYM 212
Cdd:TIGR02517  80 SPGPiedGPAPGVGGDQFVTRVFPLRNISASELVPVLRPLVSPNGDVAAYPPTNTIVVTDYASNINRVARIIQQLDVDGA 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53758275   213 rgMSVALYPVKNADVPTIADELTKVLGLGGKGAMGNVLRILPIERLNAILAVAPEMHLLHEVQDWIERLDrYNTTRTGNV 292
Cdd:TIGR02517 160 --GSVEVIPLKNASAVDIADVLNKLLGEGGKTDGGGKLSVIAPDRRNNILIRAGSPEALERIKKLISQLD-VPASEGGNV 236

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53758275   293 HVYRCQHVDAGELAHTLGGIFGGGAGRQGPSLAPGLTGMDVGSGISSAFGSASAtaggfggssagyggsggsfggsgssf 372
Cdd:TIGR02517 237 RVYYLRNADAEELAKTLQGVFGGGGNEPGSSSSPGLGGAVNPGGSQSAQAASSA-------------------------- 290

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53758275   373 gssgssgssmgsttgsmgtsgssgglgrsgsgglggsggglgtsggsfggarSGAGGQGASmtqlgnnarvvaDPANNAL 452
Cdd:TIGR02517 291 ----------------------------------------------------SGGSVSGSA------------DKATNSL 306

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53758275   453 IVIAKPQDWKEIEAVIKALDVLPLQVLIDATIVEISLKNDLQYGLKWLISS------GSSTEALGSPLAALVKDFINGA- 525
Cdd:TIGR02517 307 IITASPQDYKNIRAVIKQLDVRRAQVLVEAIIVEVSLDDALELGVQWLIAGtgggvnFSTGSPNSGSLLGASASAISLGs 386

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53758275   526 -------ASASGGFSYALIANGGNVKVLLNLLAQENLVNVISSPSLMVLNNQQAKINVGDQVPVLTGTTASATIGTTQFN 598
Cdd:TIGR02517 387 agigllvTSSSTTSGVGGTGGGPNLGVLLNALKQDTGFNVLSTPSLLTLDNQEAEINVGQEVPVLTGSYNTGTGGTNANP 466

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53758275   599 QFQQ--QQSGVTLQIRPRVNSGGLVSLEIFQAISTPSPVEVGSGQKTFQFANREIQSVVAVPNGQTLALGGLISDKRSET 676
Cdd:TIGR02517 467 FNTYqrKDVGIKLKVTPQINEGGTVRLEIYQEVSSVAPTTVGSAASGPTFNKREIKTVVLVDNGDTVVLGGLIQDKTSES 546

                         650       660       670       680
                  ....*....|....*....|....*....|....*....|....*...
gi 53758275   677 QTGLPYLNQIPMIGWMFGSTEIKPERTELVVLITPRVVEKKGDINSIS 724
Cdd:TIGR02517 547 VTKVPLLGDIPVLGWLFRSTTTERTKTNLMVFITPRIIRDPEDARALT 594
PulD COG1450
Type II secretory pathway component GspD/PulD (secretin) [Intracellular trafficking, secretion, ...
 432-729 2.66e-87

Type II secretory pathway component GspD/PulD (secretin) [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 441059 [Multi-domain]  Cd Length: 333  Bit Score: 278.34  E-value: 2.66e-87
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53758275 432 ASMTQLGNNARVVADPANNALIVIAKPQDWKEIEAVIKALDVLPLQVLIDATIVEISLKNDLQYGLKWLISSGSSTEALG 511
Cdd:COG1450  35 RSLLGGAAGVSVVADPRTNSLIVRATPEQLREIEELIEQLDVPRRQVLIEAKIVEVSLSDLRELGIDWSALGGNGGGVNF 114

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53758275 512 SPLAALvkDFINGAASASGGFSYALIaNGGNVKVLLNLLAQENLVNVISSPSLMVLNNQQAKINVGDQVPVLTGTTASAT 591
Cdd:COG1450 115 GGTGSL--GSLAAAGSLGGGLNLGLL-GGGNFGALLNALESNGDANVLSSPSILTLNNQEAVIKVGQTVPYVTGSTTTSS 191

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53758275 592 IGTTQFNQFQQQqSGVTLQIRPRVNSGGLVSLEIFQAISTPSPVEVGSGQKTFQFANREIQSVVAVPNGQTLALGGLISD 671
Cdd:COG1450 192 TGNPTTTIEYVD-VGITLKVTPQINEDGTVTLDINPEVSSVTGSTTGGGNGLPTINKREISTTVRVKDGQTVVLGGLIRD 270

                       250       260       270       280       290
                ....*....|....*....|....*....|....*....|....*....|....*...
gi 53758275 672 KRSETQTGLPYLNQIPMIGWMFGSTEIKPERTELVVLITPRVVEKKGDINSISNEFRR 729
Cdd:COG1450 271 EESESESKVPLLGDIPLLGRLFRSTSKSKEKTELVIFITPTIIRDGEDAQALTEEYDR 328
Secretin pfam00263
Bacterial type II and III secretion system protein;
549-714 4.66e-51

Bacterial type II and III secretion system protein;


Pssm-ID: 459738 [Multi-domain]  Cd Length: 159  Bit Score: 175.01  E-value: 4.66e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53758275   549 LLAQENLVNVISSPSLMVLNNQQAKINVGDQVPVLTGTTASATIGTTQFNQFQqqqsGVTLQIRPRVNSGGLVSLEIFQA 628
Cdd:pfam00263   1 ALEQNGKAKILSSPSLLTLDNQEASIKVGQEVPVPTTSTTGGTTTTTVEFKDA----GLSLKVTPQVTPDGTITLKINPE 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53758275   629 ISTPSPvevGSGQKTFQFANREIQSVVAVPNGQTLALGGLISDKRSETQTGLPYLNQIPMIGWMFGSTEIKPERTELVVL 708
Cdd:pfam00263  77 VSSPDG---NGGNGVPTINTREISTTVRVKDGQTVVIGGLIQEEDSETESKVPLLGDIPLLGALFRSTSKSKEKTELLIF 153


                  ....*.
gi 53758275   709 ITPRVV 714
Cdd:pfam00263 154 ITPRIV 159
IV PHA00019
phage assembly protein
 440-714 2.29e-39

phage assembly protein


Pssm-ID: 222772 [Multi-domain]  Cd Length: 428  Bit Score: 151.12  E-value: 2.29e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53758275  440 NARVVADPANNALIVIAKPQDWKEIEAVIKALDVLPLQVLIDATIVEISLKNDLQYGLKWLISSGSSTeALGSPLAALVK 519
Cdd:PHA00019 161 GGSVTDLPGTNSLVVSGSASQLPALADFISAIDVPRRQVLIEALIFETSLGDGVDLSFAAGLASGGKV-AGGFNTARLTT 239

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53758275  520 DFingaASASGGFSyalIANGGNVKVLLNLLAQENLVNVISSPSLMVLNNQQAKINVGDQVPVLTG-TTASATIGTTQFN 598
Cdd:PHA00019 240 VL----SSAGGSFG---IFNGNVLGLSVKALENSSNSRVLSRPRILTLSGQSGYISVGQNVPFVTGrVTGEAANVNNPFQ 312

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53758275  599 QFQQQQSGVTLQIRPRVNSGGLVSLEIFQAISTPSPVEVGSGQKTFQfanREIQSVVAVPNGQTLALGGLISDKRSETQT 678
Cdd:PHA00019 313 TIERKDVGVSLEVTPVVMGDGQLVLDIDTKADSLSDSTIASDIITNQ---RSLQTTVQVKDGQTLLLGGLISSNNTDGDS 389

                        250       260       270
                 ....*....|....*....|....*....|....*.
gi 53758275  679 GLPYLNQIPMIGWMFGSTEIKPERTELVVLITPRVV 714
Cdd:PHA00019 390 SVPFLSKIPLIGWLFRSKSDSNEQRTLYVLLTARVI 425
 
Name Accession Description Interval E-value
type_II_gspD TIGR02517
type II secretion system protein D; In Gram-negative bacteria, proteins that have first ...
 56-724 0e+00

type II secretion system protein D; In Gram-negative bacteria, proteins that have first crossed the inner member by Sec-dependent protein transport can be exported across the outer membrane by type II secretion, also called the main terminal branch of the general secretion pathway. Members of this family are general secretion pathway protein D. In Yersinia enterocolitica, a second member of this family is part of a novel second type II secretion system specifically associated with virulence (See ). This family is closely homologous to the type IV pilus outer membrane secretin PilQ (TIGR02515) and to the type III secretion system pore YscC/HrcC (TIGR02516). [Protein fate, Protein and peptide secretion and trafficking]


Pssm-ID: 274175 [Multi-domain]  Cd Length: 594  Bit Score: 587.82  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53758275    56 LNFDDADLSEVTKVIlGDTLKVNYVLSPKVTGKVSLQTTRPLTEDEMIPTLETLLRMNGAALIREGGMYKIEPDAQAAIS 135
Cdd:TIGR02517   1 LNFVDADISTVVKAI-SDLTGKNFIIDPRVKGKITIISPRPVTEDEAYQLFLSALRAQGFAVVPEGNGYKIVVPRAAAKL 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53758275   136 ASGP---GVGLGMMEPGYQLRVIPLRYISAAEMQKVLEPIMPPKAVLRMDETRNLVMVAGTAEELGGVMEAVQIFDVDYM 212
Cdd:TIGR02517  80 SPGPiedGPAPGVGGDQFVTRVFPLRNISASELVPVLRPLVSPNGDVAAYPPTNTIVVTDYASNINRVARIIQQLDVDGA 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53758275   213 rgMSVALYPVKNADVPTIADELTKVLGLGGKGAMGNVLRILPIERLNAILAVAPEMHLLHEVQDWIERLDrYNTTRTGNV 292
Cdd:TIGR02517 160 --GSVEVIPLKNASAVDIADVLNKLLGEGGKTDGGGKLSVIAPDRRNNILIRAGSPEALERIKKLISQLD-VPASEGGNV 236

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53758275   293 HVYRCQHVDAGELAHTLGGIFGGGAGRQGPSLAPGLTGMDVGSGISSAFGSASAtaggfggssagyggsggsfggsgssf 372
Cdd:TIGR02517 237 RVYYLRNADAEELAKTLQGVFGGGGNEPGSSSSPGLGGAVNPGGSQSAQAASSA-------------------------- 290

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53758275   373 gssgssgssmgsttgsmgtsgssgglgrsgsgglggsggglgtsggsfggarSGAGGQGASmtqlgnnarvvaDPANNAL 452
Cdd:TIGR02517 291 ----------------------------------------------------SGGSVSGSA------------DKATNSL 306

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53758275   453 IVIAKPQDWKEIEAVIKALDVLPLQVLIDATIVEISLKNDLQYGLKWLISS------GSSTEALGSPLAALVKDFINGA- 525
Cdd:TIGR02517 307 IITASPQDYKNIRAVIKQLDVRRAQVLVEAIIVEVSLDDALELGVQWLIAGtgggvnFSTGSPNSGSLLGASASAISLGs 386

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53758275   526 -------ASASGGFSYALIANGGNVKVLLNLLAQENLVNVISSPSLMVLNNQQAKINVGDQVPVLTGTTASATIGTTQFN 598
Cdd:TIGR02517 387 agigllvTSSSTTSGVGGTGGGPNLGVLLNALKQDTGFNVLSTPSLLTLDNQEAEINVGQEVPVLTGSYNTGTGGTNANP 466

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53758275   599 QFQQ--QQSGVTLQIRPRVNSGGLVSLEIFQAISTPSPVEVGSGQKTFQFANREIQSVVAVPNGQTLALGGLISDKRSET 676
Cdd:TIGR02517 467 FNTYqrKDVGIKLKVTPQINEGGTVRLEIYQEVSSVAPTTVGSAASGPTFNKREIKTVVLVDNGDTVVLGGLIQDKTSES 546

                         650       660       670       680
                  ....*....|....*....|....*....|....*....|....*...
gi 53758275   677 QTGLPYLNQIPMIGWMFGSTEIKPERTELVVLITPRVVEKKGDINSIS 724
Cdd:TIGR02517 547 VTKVPLLGDIPVLGWLFRSTTTERTKTNLMVFITPRIIRDPEDARALT 594
PulD COG1450
Type II secretory pathway component GspD/PulD (secretin) [Intracellular trafficking, secretion, ...
 432-729 2.66e-87

Type II secretory pathway component GspD/PulD (secretin) [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 441059 [Multi-domain]  Cd Length: 333  Bit Score: 278.34  E-value: 2.66e-87
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53758275 432 ASMTQLGNNARVVADPANNALIVIAKPQDWKEIEAVIKALDVLPLQVLIDATIVEISLKNDLQYGLKWLISSGSSTEALG 511
Cdd:COG1450  35 RSLLGGAAGVSVVADPRTNSLIVRATPEQLREIEELIEQLDVPRRQVLIEAKIVEVSLSDLRELGIDWSALGGNGGGVNF 114

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53758275 512 SPLAALvkDFINGAASASGGFSYALIaNGGNVKVLLNLLAQENLVNVISSPSLMVLNNQQAKINVGDQVPVLTGTTASAT 591
Cdd:COG1450 115 GGTGSL--GSLAAAGSLGGGLNLGLL-GGGNFGALLNALESNGDANVLSSPSILTLNNQEAVIKVGQTVPYVTGSTTTSS 191

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53758275 592 IGTTQFNQFQQQqSGVTLQIRPRVNSGGLVSLEIFQAISTPSPVEVGSGQKTFQFANREIQSVVAVPNGQTLALGGLISD 671
Cdd:COG1450 192 TGNPTTTIEYVD-VGITLKVTPQINEDGTVTLDINPEVSSVTGSTTGGGNGLPTINKREISTTVRVKDGQTVVLGGLIRD 270

                       250       260       270       280       290
                ....*....|....*....|....*....|....*....|....*....|....*...
gi 53758275 672 KRSETQTGLPYLNQIPMIGWMFGSTEIKPERTELVVLITPRVVEKKGDINSISNEFRR 729
Cdd:COG1450 271 EESESESKVPLLGDIPLLGRLFRSTSKSKEKTELVIFITPTIIRDGEDAQALTEEYDR 328
Secretin pfam00263
Bacterial type II and III secretion system protein;
549-714 4.66e-51

Bacterial type II and III secretion system protein;


Pssm-ID: 459738 [Multi-domain]  Cd Length: 159  Bit Score: 175.01  E-value: 4.66e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53758275   549 LLAQENLVNVISSPSLMVLNNQQAKINVGDQVPVLTGTTASATIGTTQFNQFQqqqsGVTLQIRPRVNSGGLVSLEIFQA 628
Cdd:pfam00263   1 ALEQNGKAKILSSPSLLTLDNQEASIKVGQEVPVPTTSTTGGTTTTTVEFKDA----GLSLKVTPQVTPDGTITLKINPE 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53758275   629 ISTPSPvevGSGQKTFQFANREIQSVVAVPNGQTLALGGLISDKRSETQTGLPYLNQIPMIGWMFGSTEIKPERTELVVL 708
Cdd:pfam00263  77 VSSPDG---NGGNGVPTINTREISTTVRVKDGQTVVIGGLIQEEDSETESKVPLLGDIPLLGALFRSTSKSKEKTELLIF 153


                  ....*.
gi 53758275   709 ITPRVV 714
Cdd:pfam00263 154 ITPRIV 159
pilus_MshL TIGR02519
pilus (MSHA type) biogenesis protein MshL; Members of this family are predicted secretins, ...
 443-714 3.09e-41

pilus (MSHA type) biogenesis protein MshL; Members of this family are predicted secretins, that is, outer membrane pore proteins associated with delivery of proteins from periplasm to the outside of the cell. Related families include GspD of type II secretion (TIGR02517), the YscC/HrcC family from type III secretion (TIGR02516), and the PilQ secretin of type IV pilus formation (TIGR02515). Members of this family are found in gene clusters associated with MSHA (mannose-sensitive hemagglutinin) and related pili, and appear to be the secretin of this pilus system. [Cell envelope, Surface structures]


Pssm-ID: 274176 [Multi-domain]  Cd Length: 290  Bit Score: 152.54  E-value: 3.09e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53758275   443 VVADPANNALIVIAKPQDWKEIEAVIKAL-DVLPLQVLIDATIVEISLKNDLQYGLKWLISSGSSTEALGSPLAALVKDf 521
Cdd:TIGR02519   1 YIINPEAGLLTVTATPAQIRRVEEYLESLqERIHRQVLIEAKILEVTLSDNHQQGIDWSNFNGSGLARYKALGAANSND- 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53758275   522 INGAASASGGFSYALIAN------GGNVKVLLNLLAQENLVNVISSPSLMVLNNQQAKINVGD-----QVPVLTGTTASA 590
Cdd:TIGR02519  80 SSGNQFSSGLGFLDNIGLptgvnsGFGFDSIINFLATFGDTKVLSNPKVMALNNQPAVISVGDniryvTEESSTGTTGGT 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53758275   591 TIGTTQFNQFQQQQSGVTLQIRPRVNSGGLVSLEIFQAIS-----TPSPVEVGSGQKTF--QFANREIQSVVAVPNGQTL 663
Cdd:TIGR02519 160 TSTASSDTRVDSVFSGIVLGVTPQISDDGKVILNVHPSISevkpqSIDLNPVGNGAEVAlpEISVKEMSSVLRVKDGDTV 239

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 53758275   664 ALGGLISDKRSETQTGLPYLNQIPMIGWMFGSTEIKPERTELVVLITPRVV 714
Cdd:TIGR02519 240 VLGGLIDKKKSNTKTGLPFLGDIPGLGYLFGYKSKSKKKTELVIIIRPSVV 290
IV PHA00019
phage assembly protein
 440-714 2.29e-39

phage assembly protein


Pssm-ID: 222772 [Multi-domain]  Cd Length: 428  Bit Score: 151.12  E-value: 2.29e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53758275  440 NARVVADPANNALIVIAKPQDWKEIEAVIKALDVLPLQVLIDATIVEISLKNDLQYGLKWLISSGSSTeALGSPLAALVK 519
Cdd:PHA00019 161 GGSVTDLPGTNSLVVSGSASQLPALADFISAIDVPRRQVLIEALIFETSLGDGVDLSFAAGLASGGKV-AGGFNTARLTT 239

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53758275  520 DFingaASASGGFSyalIANGGNVKVLLNLLAQENLVNVISSPSLMVLNNQQAKINVGDQVPVLTG-TTASATIGTTQFN 598
Cdd:PHA00019 240 VL----SSAGGSFG---IFNGNVLGLSVKALENSSNSRVLSRPRILTLSGQSGYISVGQNVPFVTGrVTGEAANVNNPFQ 312

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53758275  599 QFQQQQSGVTLQIRPRVNSGGLVSLEIFQAISTPSPVEVGSGQKTFQfanREIQSVVAVPNGQTLALGGLISDKRSETQT 678
Cdd:PHA00019 313 TIERKDVGVSLEVTPVVMGDGQLVLDIDTKADSLSDSTIASDIITNQ---RSLQTTVQVKDGQTLLLGGLISSNNTDGDS 389

                        250       260       270
                 ....*....|....*....|....*....|....*.
gi 53758275  679 GLPYLNQIPMIGWMFGSTEIKPERTELVVLITPRVV 714
Cdd:PHA00019 390 SVPFLSKIPLIGWLFRSKSDSNEQRTLYVLLTARVI 425
HofQ COG4796
Type II secretory pathway, component HofQ [Intracellular trafficking, secretion, and vesicular ...
 429-715 7.83e-39

Type II secretory pathway, component HofQ [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 443824 [Multi-domain]  Cd Length: 570  Bit Score: 152.32  E-value: 7.83e-39
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53758275 429 GQGASMtqLGNNARVVADPANNALIVIAKPQDWKEIEAVIKALDVLPLQVLIDATIVEISLKNDLQYGLKW--------- 499
Cdd:COG4796 277 GQRGSL--LSERGSVTVDERTNTLIVRDTPSKLEEIRRLIAKLDIPVRQVLIEARIVEASDSFSRELGVRWggsgangtg 354

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53758275 500 --LISSGSSTEALGSPLAALVKDF-IN-GAASASG--GFSYALIANGGNVKVLLNLLAQENLVNVISSPSLMVLNNQQAK 573
Cdd:COG4796 355 nnRGGIGGSLNGTTAGTPLLPDGLnVNlPAANPAGslGLTLAKLGGGRLLDLELSALEAEGKGEIISSPRVITADQQEAS 434

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53758275 574 INVGDQVPVLTGTTasatigttqfnqfqqqqSGVT----------LQIRPRVNSGGLVSLEIfqAISTPSPVEVGSGQkT 643
Cdd:COG4796 435 IEQGTEIPYQESSS-----------------SGATsvefkeavlsLEVTPQITPDGRIILDL--DVSKDSPGETVAGG-V 494

                       250       260       270       280       290       300       310
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 53758275 644 FQFANREIQSVVAVPNGQTLALGGLISDKRSETQTGLPYLNQIPMIGWMFGSTEIKPERTELVVLITPRVVE 715
Cdd:COG4796 495 PAIDTKEIKTQVLVENGETVVLGGIYEQTESNSVDKVPFLGDIPLLGWLFKNTTKTDEKRELLIFITPRIVK 566
CpaC COG4964
Flp pilus assembly protein, secretin CpaC [Intracellular trafficking, secretion, and vesicular ...
 436-715 4.35e-36

Flp pilus assembly protein, secretin CpaC [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 443990 [Multi-domain]  Cd Length: 456  Bit Score: 141.93  E-value: 4.35e-36
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53758275 436 QLGNNARVVADPANNALIV---IAKPQDWKEIEA----------VIKALDV-LPLQVLIDATIVEISlKNDL-QYGLKWL 500
Cdd:COG4964 121 RLLPGEGIRVRAVGDRVVLsgtVSSAADADRAVDlaeayagggkVINLLTVgGPQQVMLKVRVAEVS-RSVLkQLGINWS 199

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53758275 501 ISSGSSTEALGSPLAALVKDFINGAASasGGFSyALIANGGNVKVLLNLLAQENLVNVISSPSLMVLNNQQAKINVGDQV 580
Cdd:COG4964 200 GLGSSGGFSFGLLTGGLLSGLLGGATA--GAFS-GFGFGNASISATLDALEQNGLARVLAEPNLTALSGETASFLAGGEF 276

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53758275 581 PVLTGTTAsatiGTTqfnqfqqqqS------GVTLQIRPRVNSGGLVSLEIFQAISTPSPvevgSGQKTFQ------FAN 648
Cdd:COG4964 277 PIPVAQGD----GTI---------TveykefGVSLNFTPTVLSNGRISLKVAPEVSELDP----SNAVTLNgitipgLTT 339

                       250       260       270       280       290       300
                ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 53758275 649 REIQSVVAVPNGQTLALGGLISDKRSETQTGLPYLNQIPMIGWMFGSTEIKPERTELVVLITPRVVE 715
Cdd:COG4964 340 RRAETTVELRSGQSFAIAGLLSSNTRQNVSKVPGLGDIPILGALFRSRSFQRNETELVIIVTPYLVK 406
hofQ PRK13568
DNA uptake porin HofQ;
430-714 2.28e-27

DNA uptake porin HofQ;


Pssm-ID: 237430 [Multi-domain]  Cd Length: 381  Bit Score: 114.83  E-value: 2.28e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53758275  430 QGASMTQLGNnarVVADPANNALIVIAKPQDWKEIEAVIKALDvLPL-QVLIDATIVEISLKNDLQYGLKWLISSGsstE 508
Cdd:PRK13568 105 RGGLLSPRGS---VTADKRTNTLLIRDTPAALAQLKNWLIELD-LPLqQVQLAAHIVTISSESLQELGVRWGMGEG---K 177

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53758275  509 ALGSPLAalVKDF-IN---GAASASGGFSYALIaNGGNVKVLLNLLAQENLVNVISSPSLMVLNNQQAKINVGDQVP--V 582
Cdd:PRK13568 178 QGNTALR--INDFnVNlplPNPAASAGFHLARL-GGRLLDLELSALEQENQVDIIASPRLFTSHQQTASIKQGTEIPytV 254

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53758275  583 LTGTTASATIgttqfnqfQQQQSGVTLQIRPRVNSGGLVSLEIfqAISTPSP---VEVGSGQkTFQFANREIQSVVAVPN 659
Cdd:PRK13568 255 SSGKSGSTSI--------EFKEAVLGMEVTPKILRNGRITLKL--KISQNMPgrtIKRGEGE-MLAIDKQEIQTQVTVKD 323

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 53758275  660 GQTLALGGLISDKRSETQTGLPYLNQIPMIGWMFGSTEIKPERTELVVLITPRVV 714
Cdd:PRK13568 324 GETIVLGGIFQQQKRQSVNKVPLLGDIPLLGALFRQDTQQQSRRELVIFITPKLI 378
hofQ PRK10560
outer membrane porin HofQ; Provisional
 443-714 1.12e-22

outer membrane porin HofQ; Provisional


Pssm-ID: 182549 [Multi-domain]  Cd Length: 386  Bit Score: 101.05  E-value: 1.12e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53758275  443 VVADPANNALIVIAKPQDWKEIEAVIKALDVLPLQVLIDATIVEISLKNDLQYGLKWLISSGSSTEALGSPlAALVKDFI 522
Cdd:PRK10560 120 MTVDKRTNRLLLRDNKTALSALEQWVAQMDLPVGQVELAAHIVTINEKSLRELGVKWTLADAQQAGGVGQV-TTLGSDLS 198

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53758275  523 NGAASASGGFSYALIaNGGNVKVLLNLLAQENLVNVISSPSLMVLNNQQAKINVGDQVPVltgTTASATIGTTQFNQFQQ 602
Cdd:PRK10560 199 VATATTRVGFNIGRI-NGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPY---QVSSGESGATSVEFKEA 274

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53758275  603 QqsgVTLQIRPRVNSGGLVSLEIFQAISTPSPVEVGSGQKTFQFANREIQSVVAVPNGQTLALGGLISDKRSETQTGLPY 682
Cdd:PRK10560 275 V---LGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEVKSGETLALGGIFSRKNKSGQDSVPL 351

                        250       260       270
                 ....*....|....*....|....*....|..
gi 53758275  683 LNQIPMIGWMFGSTEIKPERTELVVLITPRVV 714
Cdd:PRK10560 352 LGDIPWLGQLFRHDGKEDERRELVVFITPRLV 383
PRK15346 PRK15346
EscC/YscC/HrcC family type III secretion system outer membrane ring protein;
445-697 1.11e-20

EscC/YscC/HrcC family type III secretion system outer membrane ring protein;


Pssm-ID: 237950 [Multi-domain]  Cd Length: 499  Bit Score: 96.30  E-value: 1.11e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53758275  445 ADPANNALIVIAKPQDWKEIEAVIKALDVLPLQVLIDATIVEISLKNDLQYGLKWlissgSSTEALGSPLAAlvkdFING 524
Cdd:PRK15346 240 ADPRQNAVIVRDRAANMAIYRSLITQLDQRPQMIEISVSIIDVDAGDINQLGIDW-----SASASLGGGKIS----FNSG 310

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53758275  525 AASA-SGGFSyALIANGGNVKVLLNLLAQENLVNVISSPSLMVLNNQQAKI--NV-------GDQVPVLTGTTasatigt 594
Cdd:PRK15346 311 FADGnASGFS-TVISNTGNFMVRLNALEKNSKAKILSQPSVVTLNNIQAVLdkNVtfytklqGEKVAKLESIT------- 382

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53758275  595 tqfnqfqqqqSGVTLQIRPR-VNSGG----LVSLEI-----FQAISTPSPVEvgsgqktfQFANREIQSVVAVPNGQTLA 664
Cdd:PRK15346 383 ----------TGSLLRVTPRlIDDNGtqkvMLNLNIqdgqqSATQSETDPLP--------EVQNSEIATQATLKAGQSLL 444

                        250       260       270
                 ....*....|....*....|....*....|...
gi 53758275  665 LGGLISDKRSETQTGLPYLNQIPMIGWMFGSTE 697
Cdd:PRK15346 445 LGGFIQDKQIESQNKIPLLGDIPLIGGLFRSTD 477
PRK15339 PRK15339
EscC/YscC/HrcC family type III secretion system outer membrane ring protein;
437-712 7.49e-09

EscC/YscC/HrcC family type III secretion system outer membrane ring protein;


Pssm-ID: 237948 [Multi-domain]  Cd Length: 559  Bit Score: 59.01  E-value: 7.49e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53758275  437 LGNNARVVADPANNALIVIAKPQDWKEIEAVIKALDVLPLQVLIDATIVEISlKNDL-QYGLKWlisSGSSTeaLGSPLA 515
Cdd:PRK15339 262 AAGDIKIIAYPDTNSLLVKGTAEQVHFIEMLVKALDVAKRHVELSLWIIDLD-KSDLeQLGVNW---SGSIT--IGDKLG 335

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53758275  516 AlvkDFINGAASASGGFSYalIANggnvkvlLNLLAQENLVNVISSPSLMVLNNQQAKIN---------VGDQVPVLTGT 586
Cdd:PRK15339 336 V---SLNQSSISTLDGSRF--IAA-------VMALEQKKKANVVSRPVVLTQENIPAIFDnnrtfytklVGERNVALEHV 403

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53758275  587 TasatigttqfnqfqqqqSGVTLQIRPRVNSGGLV--SLEIFQAISTPSPVEVGSGQKTFQFANREIQSVVA-VPNGQTL 663
Cdd:PRK15339 404 T-----------------YGTMISVLPRFSADGQIemSLDIEDGNEKTPQSDTTTSVDALPEVGRTLISTIArVPQGKSL 466

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*....
gi 53758275  664 ALGGLISDKRSETQTGLPYLNQIPMIGWMFGSTEIKPERTELVVLITPR 712
Cdd:PRK15339 467 LIGGYTRDANTDEVQSIPFLGSLPLIGSLFRYSSKNKSNIVRVFLIEPR 515
Secretin_N pfam03958
Bacterial type II/III secretion system short domain; This is a short, often repeated, domain ...
 153-209 7.41e-07

Bacterial type II/III secretion system short domain; This is a short, often repeated, domain found in bacterial type II/III secretory system proteins. All previous NolW-like domains fall into this family.


Pssm-ID: 461109 [Multi-domain]  Cd Length: 68  Bit Score: 46.83  E-value: 7.41e-07
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 53758275   153 RVIPLRYISAAEMQKVLEPIM------PPKAVLRMDETRNLVMVAGTAEELGGVMEAVQIFDV 209
Cdd:pfam03958   2 RVIPLKYASAEDLASALRSLLggsgllSKRGSVVADPRTNSLIVSGPPEYVELVRQLIKQLDV 64
Secretin_N pfam03958
Bacterial type II/III secretion system short domain; This is a short, often repeated, domain ...
 437-477 8.11e-06

Bacterial type II/III secretion system short domain; This is a short, often repeated, domain found in bacterial type II/III secretory system proteins. All previous NolW-like domains fall into this family.


Pssm-ID: 461109 [Multi-domain]  Cd Length: 68  Bit Score: 44.13  E-value: 8.11e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 53758275   437 LGNNARVVADPANNALIVIAKPQDWKEIEAVIKALDVLPLQ 477
Cdd:pfam03958  28 LSKRGSVVADPRTNSLIVSGPPEYVELVRQLIKQLDVPRAQ 68
Secretin_N pfam03958
Bacterial type II/III secretion system short domain; This is a short, often repeated, domain ...
 217-283 1.32e-05

Bacterial type II/III secretion system short domain; This is a short, often repeated, domain found in bacterial type II/III secretory system proteins. All previous NolW-like domains fall into this family.


Pssm-ID: 461109 [Multi-domain]  Cd Length: 68  Bit Score: 43.36  E-value: 1.32e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 53758275   217 VALYPVKNADVPTIADELTKVLGLGGKGamGNVLRILPIERLNAILAVAPEmHLLHEVQDWIERLDR 283
Cdd:pfam03958   1 TRVIPLKYASAEDLASALRSLLGGSGLL--SKRGSVVADPRTNSLIVSGPP-EYVELVRQLIKQLDV 64
hofQ PRK10560
outer membrane porin HofQ; Provisional
 59-209 8.69e-04

outer membrane porin HofQ; Provisional


Pssm-ID: 182549 [Multi-domain]  Cd Length: 386  Bit Score: 42.50  E-value: 8.69e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53758275   59 DDADLSEVTKViLGDTLKVNYVLSPKVTGKVSLQTTR-PLTEdemipTLETLLRMNGAALIREGGMYKIEPDA------- 130
Cdd:PRK10560   3 DDVPVAQVLQA-LAEQEKLNLVVSPDVSGTVSLHLTDvPWKQ-----ALQTVVKSAGLILRQEGNILSVHSQAwqnenia 76

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53758275  131 -----QAAISASGPgvglgmmepgYQLRVIPLRYISAAEMQKVLEPIMPPKAVLRMDETRNLVMVAGTAEELGGVMEAVQ 205
Cdd:PRK10560  77 rqeaeQARAQANLP----------LENRSITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKTALSALEQWVA 146


                 ....
gi 53758275  206 IFDV 209
Cdd:PRK10560 147 QMDL 150
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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