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Conserved domains on  [gi|77389007|gb|ABA80192|]
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putative outer membrane protein, OmpA family [Cereibacter sphaeroides 2.4.1]

Protein Classification

OmpA family protein( domain architecture ID 11458388)

OmpA family membrane protein acts as a porin with low permeability that allows slow penetration of small solutes; may function in peptidoglycan binding

CATH:  3.30.1330.60
Gene Ontology:  GO:0009279|GO:0015288|GO:0042834
PubMed:  17559395|22986056
SCOP:  4001470
TCDB:  1.B.6

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
OmpA_C-like cd07185
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; ...
 497-599 5.49e-36

Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.


:

Pssm-ID: 143586 [Multi-domain]  Cd Length: 106  Bit Score: 130.75  E-value: 5.49e-36
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 77389007 497 ITFEPGSAEIDQSARGTLDGLAEVFKVCKAMPLEISGHTDSQGSEGGNKALSQARAEAVLLALQGRRVDVGRMKAVGYGE 576
Cdd:cd07185   4 IYFDFGSAELTPEAKPLLDKLAEVLKKNPDAKIRIEGHTDSRGSDAYNQELSERRAEAVADYLVSKGVDASRITAVGYGE 83

                        90       100
                ....*....|....*....|...
gi 77389007 577 ERPIADNGKEEGREANRRIEFTL 599
Cdd:cd07185  84 SRPIASNDTEEGRAKNRRVEIVI 106
OmpA COG2885
Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall ...
 318-601 9.18e-33

Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 442131 [Multi-domain]  Cd Length: 294  Bit Score: 127.98  E-value: 9.18e-33
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 77389007 318 AQFDRAVGALEAALPKVFSLEATLPPAPQAVAEGPAEFRATLSDQGRVELSGRVTDELTRKAVDSFARAQFGASKVRSAT 397
Cdd:COG2885  10 ALAIDAAGGLLSGAALLLALLGVLGSAGGLLSLADDLAEASAGAAGGAAAGAEAGGLSAGLELLDAGSLSATAAAGAAAL 89

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 77389007 398 RLDGELPEGWPTRVLAGLESLAQLHSGELLVRADTVEVTGVTGSKQASGRISQVLSARLGQGRSFKVDIVYDKKFDPEAA 477
Cdd:COG2885  90 LVLLAALGALGAGLAALLLAIAAAASAAAADALALAAGAAAALGALGASAAAAAAALAAAKALGDSAAAALDAAAKAEAA 169

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 77389007 478 LPTAQECMSRIRRVLAGQKITFEPGSAEIDQSARGTLDGLAEVFKVCKAMPLEISGHTDSQGSEGGNKALSQARAEAVLL 557
Cdd:COG2885 170 AAAAALLPAAVAEVVLLSNVYFDFDSAELTPEAKAALDELAALLKENPDLRIEIEGHTDSRGSDAYNLALSERRAEAVKD 249

                       250       260       270       280
                ....*....|....*....|....*....|....*....|....
gi 77389007 558 ALQGRRVDVGRMKAVGYGEERPIADNGKEEGREANRRIEFTLLG 601
Cdd:COG2885 250 YLVSKGIPASRITAVGYGESRPVASNDTEEGRAKNRRVEIVVLK 293
 
Name Accession Description Interval E-value
OmpA_C-like cd07185
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; ...
 497-599 5.49e-36

Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.


Pssm-ID: 143586 [Multi-domain]  Cd Length: 106  Bit Score: 130.75  E-value: 5.49e-36
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 77389007 497 ITFEPGSAEIDQSARGTLDGLAEVFKVCKAMPLEISGHTDSQGSEGGNKALSQARAEAVLLALQGRRVDVGRMKAVGYGE 576
Cdd:cd07185   4 IYFDFGSAELTPEAKPLLDKLAEVLKKNPDAKIRIEGHTDSRGSDAYNQELSERRAEAVADYLVSKGVDASRITAVGYGE 83

                        90       100
                ....*....|....*....|...
gi 77389007 577 ERPIADNGKEEGREANRRIEFTL 599
Cdd:cd07185  84 SRPIASNDTEEGRAKNRRVEIVI 106
OmpA COG2885
Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall ...
 318-601 9.18e-33

Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442131 [Multi-domain]  Cd Length: 294  Bit Score: 127.98  E-value: 9.18e-33
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 77389007 318 AQFDRAVGALEAALPKVFSLEATLPPAPQAVAEGPAEFRATLSDQGRVELSGRVTDELTRKAVDSFARAQFGASKVRSAT 397
Cdd:COG2885  10 ALAIDAAGGLLSGAALLLALLGVLGSAGGLLSLADDLAEASAGAAGGAAAGAEAGGLSAGLELLDAGSLSATAAAGAAAL 89

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 77389007 398 RLDGELPEGWPTRVLAGLESLAQLHSGELLVRADTVEVTGVTGSKQASGRISQVLSARLGQGRSFKVDIVYDKKFDPEAA 477
Cdd:COG2885  90 LVLLAALGALGAGLAALLLAIAAAASAAAADALALAAGAAAALGALGASAAAAAAALAAAKALGDSAAAALDAAAKAEAA 169

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 77389007 478 LPTAQECMSRIRRVLAGQKITFEPGSAEIDQSARGTLDGLAEVFKVCKAMPLEISGHTDSQGSEGGNKALSQARAEAVLL 557
Cdd:COG2885 170 AAAAALLPAAVAEVVLLSNVYFDFDSAELTPEAKAALDELAALLKENPDLRIEIEGHTDSRGSDAYNLALSERRAEAVKD 249

                       250       260       270       280
                ....*....|....*....|....*....|....*....|....
gi 77389007 558 ALQGRRVDVGRMKAVGYGEERPIADNGKEEGREANRRIEFTLLG 601
Cdd:COG2885 250 YLVSKGIPASRITAVGYGESRPVASNDTEEGRAKNRRVEIVVLK 293
MotB COG1360
Flagellar motor protein MotB [Cell motility];
499-600 1.62e-24

Flagellar motor protein MotB [Cell motility];


Pssm-ID: 440971 [Multi-domain]  Cd Length: 174  Bit Score: 100.69  E-value: 1.62e-24
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 77389007 499 FEPGSAEIDQSARGTLDGLAEVFKVcKAMPLEISGHTDSQGSEGG----NKALSQARAEAVLLALQGRRVDVGRMKAVGY 574
Cdd:COG1360  63 FDSGSAELTPEGRELLDKIAAVLAE-VPNRIRVEGHTDNVPISTArfpsNWELSAARAAAVVRYLIEGGVPPERLSAVGY 141

                        90       100
                ....*....|....*....|....*.
gi 77389007 575 GEERPIADNGKEEGREANRRIEFTLL 600
Cdd:COG1360 142 GDTRPLAPNDTPEGRARNRRVEIVIL 167
OmpA pfam00691
OmpA family; The Pfam entry also includes MotB and related proteins which are not included in ...
 499-592 1.25e-20

OmpA family; The Pfam entry also includes MotB and related proteins which are not included in the Prosite family.


Pssm-ID: 425825 [Multi-domain]  Cd Length: 95  Bit Score: 87.03  E-value: 1.25e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 77389007   499 FEPGSAEIDQSARGTLDGLAEVFKVCKA-MPLEISGHTDSQGSEGGNKALSQARAEAVLLALQGRRVDVGRMKAVGYGEE 577
Cdd:pfam00691   1 FDPGSSQLTPKAKATLDEIADLLKFPELkNTITIEGHTDTVGSAAYNWELSQRRAEAVRRYLVNFGVPPSRISVVGYGAT 80

                          90
                  ....*....|....*
gi 77389007   578 RPIADNGKEEGREAN 592
Cdd:pfam00691  81 KPITDNKTPEGRARN 95
PRK09038 PRK09038
flagellar motor protein MotD; Reviewed
 497-631 2.18e-18

flagellar motor protein MotD; Reviewed


Pssm-ID: 181618 [Multi-domain]  Cd Length: 281  Bit Score: 85.83  E-value: 2.18e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 77389007  497 ITFEPGSAEIDQSARGTLDGLAEVFKVcKAMPLEISGHTDSQGSEG----GNKALSQARAEAV--LLALQGrrVDVGRMK 570
Cdd:PRK09038 135 LLFGSGDAMLSDQAFAILEKVAEVLKP-APNPIHVEGFTDNVPIATaqfpSNWELSAARAASVvrLLADDG--VAPSRLA 211

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 77389007  571 AVGYGEERPIADNGKEEGREANRRIEFTLL-------GEDGNPVDDAAPVveetaEATPSDGAEAAAD 631
Cdd:PRK09038 212 AVGYGEFQPVADNDTAEGRARNRRVVLVILrnldvrrSLTPVGSANATPD-----AALRRAGTQAAPA 274
Pal_lipo TIGR02802
peptidoglycan-associated lipoprotein; Members of this protein are Pal (also called OprL), the ...
 496-599 1.63e-15

peptidoglycan-associated lipoprotein; Members of this protein are Pal (also called OprL), the Peptidoglycan-Associated Lipoprotein of the Tol-Pal system. The system appears to be involved both in the maintenance of outer membrane integrity and in the import of certain organic molecules as nutrients. Members of this family contain a hydrodrophobic lipoprotein signal sequence, a conserved N-terminal cleavage and modification site, a poorly conserved low-complexity region, together comprising about 65 amino acids, and a well-conserved C-terminal domain. The seed alignment for this model includes only the conserved C-terminal domain.


Pssm-ID: 274307 [Multi-domain]  Cd Length: 104  Bit Score: 72.59  E-value: 1.63e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 77389007   496 KITFEPGSAEIDQSARGTLDGLAEVFKVCKAMPLEISGHTDSQGSEGGNKALSQARAEAVLLALQGRRVDVGRMKAVGYG 575
Cdd:TIGR02802   1 RVYFDFDSSDLKSEAQATLDAHAQYLKKNPSVRVTIEGHTDERGTREYNLALGERRANAVKDYLQSKGVSASQIETVSYG 80

                          90       100
                  ....*....|....*....|....
gi 77389007   576 EERPIADNGKEEGREANRRIEFTL 599
Cdd:TIGR02802  81 KEKPAALGHDEAAWAKNRRAVLVY 104
 
Name Accession Description Interval E-value
OmpA_C-like cd07185
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; ...
 497-599 5.49e-36

Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.


Pssm-ID: 143586 [Multi-domain]  Cd Length: 106  Bit Score: 130.75  E-value: 5.49e-36
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 77389007 497 ITFEPGSAEIDQSARGTLDGLAEVFKVCKAMPLEISGHTDSQGSEGGNKALSQARAEAVLLALQGRRVDVGRMKAVGYGE 576
Cdd:cd07185   4 IYFDFGSAELTPEAKPLLDKLAEVLKKNPDAKIRIEGHTDSRGSDAYNQELSERRAEAVADYLVSKGVDASRITAVGYGE 83

                        90       100
                ....*....|....*....|...
gi 77389007 577 ERPIADNGKEEGREANRRIEFTL 599
Cdd:cd07185  84 SRPIASNDTEEGRAKNRRVEIVI 106
OmpA COG2885
Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall ...
 318-601 9.18e-33

Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442131 [Multi-domain]  Cd Length: 294  Bit Score: 127.98  E-value: 9.18e-33
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 77389007 318 AQFDRAVGALEAALPKVFSLEATLPPAPQAVAEGPAEFRATLSDQGRVELSGRVTDELTRKAVDSFARAQFGASKVRSAT 397
Cdd:COG2885  10 ALAIDAAGGLLSGAALLLALLGVLGSAGGLLSLADDLAEASAGAAGGAAAGAEAGGLSAGLELLDAGSLSATAAAGAAAL 89

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 77389007 398 RLDGELPEGWPTRVLAGLESLAQLHSGELLVRADTVEVTGVTGSKQASGRISQVLSARLGQGRSFKVDIVYDKKFDPEAA 477
Cdd:COG2885  90 LVLLAALGALGAGLAALLLAIAAAASAAAADALALAAGAAAALGALGASAAAAAAALAAAKALGDSAAAALDAAAKAEAA 169

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 77389007 478 LPTAQECMSRIRRVLAGQKITFEPGSAEIDQSARGTLDGLAEVFKVCKAMPLEISGHTDSQGSEGGNKALSQARAEAVLL 557
Cdd:COG2885 170 AAAAALLPAAVAEVVLLSNVYFDFDSAELTPEAKAALDELAALLKENPDLRIEIEGHTDSRGSDAYNLALSERRAEAVKD 249

                       250       260       270       280
                ....*....|....*....|....*....|....*....|....
gi 77389007 558 ALQGRRVDVGRMKAVGYGEERPIADNGKEEGREANRRIEFTLLG 601
Cdd:COG2885 250 YLVSKGIPASRITAVGYGESRPVASNDTEEGRAKNRRVEIVVLK 293
MotB COG1360
Flagellar motor protein MotB [Cell motility];
499-600 1.62e-24

Flagellar motor protein MotB [Cell motility];


Pssm-ID: 440971 [Multi-domain]  Cd Length: 174  Bit Score: 100.69  E-value: 1.62e-24
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 77389007 499 FEPGSAEIDQSARGTLDGLAEVFKVcKAMPLEISGHTDSQGSEGG----NKALSQARAEAVLLALQGRRVDVGRMKAVGY 574
Cdd:COG1360  63 FDSGSAELTPEGRELLDKIAAVLAE-VPNRIRVEGHTDNVPISTArfpsNWELSAARAAAVVRYLIEGGVPPERLSAVGY 141

                        90       100
                ....*....|....*....|....*.
gi 77389007 575 GEERPIADNGKEEGREANRRIEFTLL 600
Cdd:COG1360 142 GDTRPLAPNDTPEGRARNRRVEIVIL 167
OmpA pfam00691
OmpA family; The Pfam entry also includes MotB and related proteins which are not included in ...
 499-592 1.25e-20

OmpA family; The Pfam entry also includes MotB and related proteins which are not included in the Prosite family.


Pssm-ID: 425825 [Multi-domain]  Cd Length: 95  Bit Score: 87.03  E-value: 1.25e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 77389007   499 FEPGSAEIDQSARGTLDGLAEVFKVCKA-MPLEISGHTDSQGSEGGNKALSQARAEAVLLALQGRRVDVGRMKAVGYGEE 577
Cdd:pfam00691   1 FDPGSSQLTPKAKATLDEIADLLKFPELkNTITIEGHTDTVGSAAYNWELSQRRAEAVRRYLVNFGVPPSRISVVGYGAT 80

                          90
                  ....*....|....*
gi 77389007   578 RPIADNGKEEGREAN 592
Cdd:pfam00691  81 KPITDNKTPEGRARN 95
PRK09038 PRK09038
flagellar motor protein MotD; Reviewed
 497-631 2.18e-18

flagellar motor protein MotD; Reviewed


Pssm-ID: 181618 [Multi-domain]  Cd Length: 281  Bit Score: 85.83  E-value: 2.18e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 77389007  497 ITFEPGSAEIDQSARGTLDGLAEVFKVcKAMPLEISGHTDSQGSEG----GNKALSQARAEAV--LLALQGrrVDVGRMK 570
Cdd:PRK09038 135 LLFGSGDAMLSDQAFAILEKVAEVLKP-APNPIHVEGFTDNVPIATaqfpSNWELSAARAASVvrLLADDG--VAPSRLA 211

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 77389007  571 AVGYGEERPIADNGKEEGREANRRIEFTLL-------GEDGNPVDDAAPVveetaEATPSDGAEAAAD 631
Cdd:PRK09038 212 AVGYGEFQPVADNDTAEGRARNRRVVLVILrnldvrrSLTPVGSANATPD-----AALRRAGTQAAPA 274
PRK10510 PRK10510
OmpA family lipoprotein;
497-599 2.68e-17

OmpA family lipoprotein;


Pssm-ID: 182507 [Multi-domain]  Cd Length: 219  Bit Score: 81.07  E-value: 2.68e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 77389007  497 ITFEPGSAEIDQSARGTLDGLAEVFKVCKAMPLEISGHTDSQGSEGGNKALSQARAEAVLLALQGRRVDVGRMKAVGYGE 576
Cdd:PRK10510 114 VTFDSSSATLKPAGANTLTGVAMVLKEYPKTAVNVVGYTDSTGSHDLNMRLSQQRADSVASALITQGVDASRIRTQGMGP 193

                         90       100
                 ....*....|....*....|...
gi 77389007  577 ERPIADNGKEEGREANRRIEFTL 599
Cdd:PRK10510 194 ANPIASNSTAEGKAQNRRVEITL 216
Pal_lipo TIGR02802
peptidoglycan-associated lipoprotein; Members of this protein are Pal (also called OprL), the ...
 496-599 1.63e-15

peptidoglycan-associated lipoprotein; Members of this protein are Pal (also called OprL), the Peptidoglycan-Associated Lipoprotein of the Tol-Pal system. The system appears to be involved both in the maintenance of outer membrane integrity and in the import of certain organic molecules as nutrients. Members of this family contain a hydrodrophobic lipoprotein signal sequence, a conserved N-terminal cleavage and modification site, a poorly conserved low-complexity region, together comprising about 65 amino acids, and a well-conserved C-terminal domain. The seed alignment for this model includes only the conserved C-terminal domain.


Pssm-ID: 274307 [Multi-domain]  Cd Length: 104  Bit Score: 72.59  E-value: 1.63e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 77389007   496 KITFEPGSAEIDQSARGTLDGLAEVFKVCKAMPLEISGHTDSQGSEGGNKALSQARAEAVLLALQGRRVDVGRMKAVGYG 575
Cdd:TIGR02802   1 RVYFDFDSSDLKSEAQATLDAHAQYLKKNPSVRVTIEGHTDERGTREYNLALGERRANAVKDYLQSKGVSASQIETVSYG 80

                          90       100
                  ....*....|....*....|....
gi 77389007   576 EERPIADNGKEEGREANRRIEFTL 599
Cdd:TIGR02802  81 KEKPAALGHDEAAWAKNRRAVLVY 104
type_VI_ompA TIGR03350
type VI secretion system peptidoglycan-associated domain; The flagellar motor protein MotB, ...
 475-599 1.38e-14

type VI secretion system peptidoglycan-associated domain; The flagellar motor protein MotB, the Gram-negative bacterial outer membrane protein OmpA (with an N-terminal outer membrane beta barrel domain) share a C-terminal peptidoglycan-associating homology region. This model describes a domain found fused to type VI secretion system homologs of the type IV system protein DotU (see model TIGR03349), with OmpA/MotB homology. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 274533 [Multi-domain]  Cd Length: 137  Bit Score: 71.18  E-value: 1.38e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 77389007   475 EAALPTAQECMSRIRRVLAGQKItFEPGSAEIDQSARGTLDGLAEVFKVCKAmPLEISGHTDSQGSEG----GNKALSQA 550
Cdd:TIGR03350  11 AAGLLTVDEDGDRSVVRLRGDEL-FASGSAEVRAEFEPLLLRIAKALAAVPG-RITVVGHTDNVPIRTarfpSNWHLSEA 88

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 77389007   551 RAEAVLLALQGRRVDVGRMKAVGYGEERPIADNGKEEGREANRRIEFTL 599
Cdd:TIGR03350  89 RAKAVADVLAQAGGPAGRVRAEGRGDSEPIASNATAAGRARNRRVEIDV 137
motB PRK08944
flagellar motor protein MotB; Reviewed
 487-616 1.51e-14

flagellar motor protein MotB; Reviewed


Pssm-ID: 236356 [Multi-domain]  Cd Length: 302  Bit Score: 74.66  E-value: 1.51e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 77389007  487 RIRrvlagQKITFEPGSAEIDQSARGTLDGLAEVFKvckAMP--LEISGHTDSQG--SE--GGNKALSQARAEAVLLAL- 559
Cdd:PRK08944 176 RIR-----EKGSFPSGSAFLQPKFKPVVRKIGELLK---DVPgiITVSGHTDNVPisSElyRSNWDLSSARAVAVAHELl 247

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 77389007  560 QGRRVDVGRMKAVGYGEERPIADNGKEEGREANRRIEFTLlgEDGNPVDDAAPVVEE 616
Cdd:PRK08944 248 KVKGFDPQRLKVVGMADTQPLVPNDTAENRARNRRVEIII--EQGKAKESDEIPVKD 302
PRK09039 PRK09039
peptidoglycan -binding protein;
487-599 1.50e-13

peptidoglycan -binding protein;


Pssm-ID: 181619 [Multi-domain]  Cd Length: 343  Bit Score: 72.31  E-value: 1.50e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 77389007  487 RIRRVLAGQK--------------ITFEPGSAEIDQSARGTLDGLAEVFK-VCKAMPLEIS------GHTDSQGSEGG-- 543
Cdd:PRK09039 202 RLREILGDREgirivgdrfvfqseVLFPTGSAELNPEGQAEIAKLAAALIeLAKEIPPEINwvlrvdGHTDNVPLSGTgr 281

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 77389007  544 ---NKALSQARAEAVLLALQGRRVDVGRMKAVGYGEERPIADNGKEEGREANRRIEFTL 599
Cdd:PRK09039 282 frdNWELSSARAISVVKFLIALGVPADRLAAAGFGEFQPLDPGDTPEARARNRRIELKL 340
motB PRK08457
flagellar motor protein MotB; Reviewed
 496-600 1.19e-12

flagellar motor protein MotB; Reviewed


Pssm-ID: 181435 [Multi-domain]  Cd Length: 257  Bit Score: 68.20  E-value: 1.19e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 77389007  496 KITFEPGSAEIDQSarGTLDGLAEVFKVCKAMP----LEISGHTDS---QGSEG-GNKALSQARAEAVLLALQGRRVDVG 567
Cdd:PRK08457 123 KLLFENGSAEIINA--DMMDYLKRIAKIITKLPkqvkINVRGYTDNsplNKSRYkDHYELAAARAYNVMKVLIQYGINPN 200

                         90       100       110
                 ....*....|....*....|....*....|...
gi 77389007  568 RMKAVGYGEERPIADNGKEEGREANRRIEFTLL 600
Cdd:PRK08457 201 RLSFSSYGSNNPIAPNDSLENRLKNNRVEIFFK 233
PRK07033 PRK07033
DotU family type VI secretion system protein;
499-605 4.24e-11

DotU family type VI secretion system protein;


Pssm-ID: 180801 [Multi-domain]  Cd Length: 427  Bit Score: 65.46  E-value: 4.24e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 77389007  499 FEPGSAEIDQSARGTLDGLAEVFKVCKAMPLeISGHTDSQGSEG----GNKALSQARAEAVLLALQGRRVDVGRMKAVGY 574
Cdd:PRK07033 318 FASASTSVRDRYQPVLARVADALNQVKGNVL-VTGYSDNVPIRTarfpSNWELSQARAQAVRALLAARLGQPERVTAEGR 396

                         90       100       110
                 ....*....|....*....|....*....|.
gi 77389007  575 GEERPIADNGKEEGREANRRIEFTLLGEDGN 605
Cdd:PRK07033 397 GDSDPVAPNDSAENRARNRRVEITLLVAPGS 427
PRK08126 PRK08126
hypothetical protein; Provisional
 499-598 1.14e-10

hypothetical protein; Provisional


Pssm-ID: 236157 [Multi-domain]  Cd Length: 432  Bit Score: 63.94  E-value: 1.14e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 77389007  499 FEPGSAEIDQSARGTLDGLA-EVFKVCKAmpLEISGHTDSQ----GSEGGNKALSQARAEAVLLALQGRRVDVGRMKAVG 573
Cdd:PRK08126 327 FVPGQATVNPAMGPLIAKIArEIARVGGK--VTVTGHTDNQpirsAQFASNLVLSEKRAAQVAQMLQSAGVPASRLEAVG 404

                         90       100
                 ....*....|....*....|....*
gi 77389007  574 YGEERPIADNGKEEGREANRRIEFT 598
Cdd:PRK08126 405 KGDAQPVADNRTPQGRAQNRRVEIT 429
PRK06925 PRK06925
flagellar motor protein MotB;
495-596 2.27e-10

flagellar motor protein MotB;


Pssm-ID: 235887 [Multi-domain]  Cd Length: 230  Bit Score: 61.32  E-value: 2.27e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 77389007  495 QKITFEPGSAEIDQSARGTLDGLAEVFKVCKAMpLEISGHTDSQGSEG----GNKALSQARAEAVL-LALQGRRVDVGRM 569
Cdd:PRK06925 118 EAVLFETGEADILKQAEPFLHKIGVLLSTIPND-IKVEGHTDSRPISTyrypSNWELSAARASSVIrYFTSKEKLDSSRF 196

                         90       100
                 ....*....|....*....|....*..
gi 77389007  570 KAVGYGEERPIADNGKEEGREANRRIE 596
Cdd:PRK06925 197 IAVGYADTKPVVPNTTEENMQENRRVE 223
motB PRK07734
flagellar motor protein MotB; Reviewed
 497-600 2.75e-10

flagellar motor protein MotB; Reviewed


Pssm-ID: 236080 [Multi-domain]  Cd Length: 259  Bit Score: 61.30  E-value: 2.75e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 77389007  497 ITFEPGSAEIDQSARGTLDGLAEVFKVCKAMPLEISGHTD------SQGSEggNKALSQARAEAVL-LALQGRRVDVGRM 569
Cdd:PRK07734 144 ILFDSGKADVRLEDLPLAKEISNLLVSNPPRNITISGHTDnvpianAQFAS--NWELSVMRAVNFMqVLLENKELDPEKF 221

                         90       100       110
                 ....*....|....*....|....*....|.
gi 77389007  570 KAVGYGEERPIADNGKEEGREANRRIEFTLL 600
Cdd:PRK07734 222 SAKGYGEYKPIASNDTAEGRAKNRRVEVLIL 252
motB PRK06667
flagellar motor protein MotB; Validated
 499-602 6.95e-09

flagellar motor protein MotB; Validated


Pssm-ID: 180652 [Multi-domain]  Cd Length: 252  Bit Score: 57.11  E-value: 6.95e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 77389007  499 FEPGSAEID-QSARGTLDGLAEVFKvckAMPLE-----ISGHTDS-----QGSEGGNKALSQARAEAVLLALqgrrVDVG 567
Cdd:PRK06667 129 FYPGSAEVKlEENRETLQKIASFIG---FLDLAgrnfrIEGHTDNvdvnpEGPWKSNWELSGARAVNMLEYI----LNYG 201

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 77389007  568 -----RMKAVGYGEERPIADNGKEEGREANRRIEFTLLGE 602
Cdd:PRK06667 202 dqsesWFQVSGFAGSRPLATEDTPEGRAYNRRIDIVILTD 241
PRK06742 PRK06742
flagellar motor protein MotS; Reviewed
 497-595 5.63e-07

flagellar motor protein MotS; Reviewed


Pssm-ID: 102525 [Multi-domain]  Cd Length: 225  Bit Score: 50.83  E-value: 5.63e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 77389007  497 ITFEPGSAEIDQSARGTLDGLAEVFKVCKAmPLEISGHTDSQGSEG----GNKALSQARAEAVLLAL-QGRRVDVGRMKA 571
Cdd:PRK06742 117 LIFDTGDANVKPEAKEIISQLVGFFQSVPN-PIVVEGHTDSRPIHNdkfpSNWELSSARAANMIHHLiEVYNVDDKRLAA 195

                         90       100
                 ....*....|....*....|....
gi 77389007  572 VGYGEERPIADNGKEEGREANRRI 595
Cdd:PRK06742 196 VGYADTKPVVPNDSPQNWEKNRRV 219
PRK10802 PRK10802
peptidoglycan-associated lipoprotein Pal;
514-594 9.72e-07

peptidoglycan-associated lipoprotein Pal;


Pssm-ID: 182744 [Multi-domain]  Cd Length: 173  Bit Score: 49.48  E-value: 9.72e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 77389007  514 LDGLAEVFKVCKAMPLEISGHTDSQGSEGGNKALSQARAEAVLLALQGRRVDVGRMKAVGYGEERPIADNGKEEGREANR 593
Cdd:PRK10802  88 LDAHANFLRSNPSYKVTVEGHADERGTPEYNIALGERRANAVKMYLQGKGVSADQISIVSYGKEKPAVLGHDEAAYAKNR 167


                 .
gi 77389007  594 R 594
Cdd:PRK10802 168 R 168
PRK09967 PRK09967
OmpA family protein;
531-595 2.21e-06

OmpA family protein;


Pssm-ID: 182172 [Multi-domain]  Cd Length: 160  Bit Score: 48.05  E-value: 2.21e-06
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 77389007  531 ISGHTDSQGSEGGNKALSQARAEAVLLA-LQGRRVDVGRMKAVGYGEERPIADNGKEEGREANRRI 595
Cdd:PRK09967  88 MDGHTDNYGEDSYNEGLSLKRANVVADAwAMGGQIPRSNLTTQGLGKKYPIASNKTAQGRAENRRV 153
PRK07034 PRK07034
hypothetical protein; Provisional
 529-596 3.86e-06

hypothetical protein; Provisional


Pssm-ID: 168775 [Multi-domain]  Cd Length: 536  Bit Score: 49.79  E-value: 3.86e-06
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 77389007  529 LEISGHTDSQ----GSEGGNKALSQARAEAVLLAL----QGRRVDVGRMKAVGYGEERPIADNGKEEGREANRRIE 596
Cdd:PRK07034 429 IEVIGHTDNKpfrsTSGNNNLKLSAARASVVADKLrestQINETHQREISAIGRGESDPLADNATEEGRKRNRRVD 504
PRK09040 PRK09040
hypothetical protein; Provisional
 529-596 5.80e-05

hypothetical protein; Provisional


Pssm-ID: 181620 [Multi-domain]  Cd Length: 214  Bit Score: 44.62  E-value: 5.80e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 77389007  529 LEISGHTDSQGSEGGNK------ALSQARAEAVLLALQGRRVDVGRMKAVGYGEERPIADNGKEEGREANRRIE 596
Cdd:PRK09040 125 LMVSGFTDDQPVRAGNRrfadnwELSAQRALTVTRALIDAGVPASSVFAAAFGSEQPVASNADDEGRAKNRRVE 198
motB PRK09041
motility protein MotB;
499-638 4.02e-03

motility protein MotB;


Pssm-ID: 236365 [Multi-domain]  Cd Length: 317  Bit Score: 39.93  E-value: 4.02e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 77389007  499 FEPGSAEIDQSARgtlDGLAEVFKVCKAMP--LEISGHTDSQ---GSEGG--NKALSQARAEAVLLAL-QGRRVDVGRMK 570
Cdd:PRK09041 165 FATGSAEVEPYMR---DILREIAPVLNDVPnrISLSGHTDATpyaNGEKGysNWELSADRANASRRELvAGGMDEGKVLR 241

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 77389007  571 AVGYGEERPIADNGKEEgrEANRRI---------EFTLLGEDGNPVDDAAPVVEETAEATPSDGAEAAADDEPSAAP 638
Cdd:PRK09041 242 VVGLASTMLLDKKDPLN--PVNRRIsivvlnkkaEEAILHENAESVALSAQNEPVSALEAPAAAPAASVPAAPAAEP 316
PRK10808 PRK10808
outer membrane protein A; Reviewed
 533-601 4.80e-03

outer membrane protein A; Reviewed


Pssm-ID: 236764 [Multi-domain]  Cd Length: 351  Bit Score: 39.67  E-value: 4.80e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 77389007  533 GHTDSQGSEGGNKALSQARAEAVLLALQGRRVDVGRMKAVGYGEERPIA----DNGKeeGREA-------NRRIEFTLLG 601
Cdd:PRK10808 264 GYTDRIGSDAYNQGLSEKRAQSVVDYLVSKGIPADKISARGMGKSNPVTgntcDNVK--PRAAlidclapDRRVEIEVKG 341
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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