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Conserved domains on  [gi|108744982|gb|ABG02626|]
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CG5976 [Drosophila melanogaster]

Protein Classification

glutaminyl-peptide cyclotransferase family protein( domain architecture ID 10133850)

glutaminyl-peptide cyclotransferase (QPCT) family protein such as QPCT that is responsible for the biosynthesis of pyroglutamyl peptides

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
M28_QC_like cd03880
M28 Zn-peptidase glutaminyl cyclase; Peptidase M28 family, glutaminyl cyclase (QC; EC 2.3.2.5) ...
54-344 4.89e-161

M28 Zn-peptidase glutaminyl cyclase; Peptidase M28 family, glutaminyl cyclase (QC; EC 2.3.2.5) subfamily. QC is involved in N-terminal glutamine cyclization of many endocrine peptides and is typically abundant in brain tissue. N-terminal glutamine residue cyclization is an important post-translational event in the processing of numerous bioactive proteins, including neuropeptides, hormones, and cytokines during their maturation in the secretory pathway. The N-terminal pGlu protects them from exopeptidase degradation and/or enables them to have proper conformation for binding to their receptors. QCs are highly conserved from yeast to human. In humans, several genetic diseases, such as osteoporosis, appear to result from mutations of the QC gene. N-terminal glutamate cyclization into pyroglutamate (pGlu) is a reaction that may be related to the formation of several plaque-forming peptides, such as amyloid-(A) peptides and collagen-like Alzheimer amyloid plaque component, which play a pivotal role in Alzheimer's disease.


:

Pssm-ID: 349876 [Multi-domain]  Cd Length: 305  Bit Score: 452.46  E-value: 4.89e-161
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108744982  54 SNLSDKLHLREAIDKILIPRVVGTTNHSIVREYIVQSLRDLD--WDVEVNSFHDHAPIkGKLHFHNIIATLNPNAERYLV 131
Cdd:cd03880    8 ELSDDNEHFNNLLAPILIPRVPGSPGHREVRNFIIDFLKSLLagWTVELDNFTEKTPI-GEVTFTNIIATLNPPAKRYLV 86
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108744982 132 LSCHYDSKYMPGVEFLGATDSAVPCAMLLNLAQVLQEQLK----PLKKSKLSLMLLFFDGEEAFEEWGPKDSIYGARHLA 207
Cdd:cd03880   87 LACHYDSKYFPEGEFIGATDSAVPCAMLLYLARSLDAALTrkwpKSKKSDLGLQLIFFDGEEAFEEWSDTDSLYGSRHLA 166
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108744982 208 KKWH---------HEGKLDRIDMLVLLDLLGAPDPAFYSFFENTESWYMRIQSVETRLAKLQLLERYASSgvaqrdpTRY 278
Cdd:cd03880  167 AKWEstpyppgsrYSGRLDRIDLLVLLDLLGAPNPTFPSYFPNTHGWYKRLADIEKRLRKLGLLESHPSE-------RKY 239
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 108744982 279 FQSQAMRSSFIEDDHIPFLRRNVPILHLIPVPFPSVWHTPDDNASVIDYATTDNLALIIRLFALEY 344
Cdd:cd03880  240 FQPHSKYTPDIEDDHIPFLERGVPVLHLIPSPFPSVWHTLDDDEENLDYPTIRNWNKILRVFVAEY 305
 
Name Accession Description Interval E-value
M28_QC_like cd03880
M28 Zn-peptidase glutaminyl cyclase; Peptidase M28 family, glutaminyl cyclase (QC; EC 2.3.2.5) ...
54-344 4.89e-161

M28 Zn-peptidase glutaminyl cyclase; Peptidase M28 family, glutaminyl cyclase (QC; EC 2.3.2.5) subfamily. QC is involved in N-terminal glutamine cyclization of many endocrine peptides and is typically abundant in brain tissue. N-terminal glutamine residue cyclization is an important post-translational event in the processing of numerous bioactive proteins, including neuropeptides, hormones, and cytokines during their maturation in the secretory pathway. The N-terminal pGlu protects them from exopeptidase degradation and/or enables them to have proper conformation for binding to their receptors. QCs are highly conserved from yeast to human. In humans, several genetic diseases, such as osteoporosis, appear to result from mutations of the QC gene. N-terminal glutamate cyclization into pyroglutamate (pGlu) is a reaction that may be related to the formation of several plaque-forming peptides, such as amyloid-(A) peptides and collagen-like Alzheimer amyloid plaque component, which play a pivotal role in Alzheimer's disease.


Pssm-ID: 349876 [Multi-domain]  Cd Length: 305  Bit Score: 452.46  E-value: 4.89e-161
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108744982  54 SNLSDKLHLREAIDKILIPRVVGTTNHSIVREYIVQSLRDLD--WDVEVNSFHDHAPIkGKLHFHNIIATLNPNAERYLV 131
Cdd:cd03880    8 ELSDDNEHFNNLLAPILIPRVPGSPGHREVRNFIIDFLKSLLagWTVELDNFTEKTPI-GEVTFTNIIATLNPPAKRYLV 86
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108744982 132 LSCHYDSKYMPGVEFLGATDSAVPCAMLLNLAQVLQEQLK----PLKKSKLSLMLLFFDGEEAFEEWGPKDSIYGARHLA 207
Cdd:cd03880   87 LACHYDSKYFPEGEFIGATDSAVPCAMLLYLARSLDAALTrkwpKSKKSDLGLQLIFFDGEEAFEEWSDTDSLYGSRHLA 166
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108744982 208 KKWH---------HEGKLDRIDMLVLLDLLGAPDPAFYSFFENTESWYMRIQSVETRLAKLQLLERYASSgvaqrdpTRY 278
Cdd:cd03880  167 AKWEstpyppgsrYSGRLDRIDLLVLLDLLGAPNPTFPSYFPNTHGWYKRLADIEKRLRKLGLLESHPSE-------RKY 239
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 108744982 279 FQSQAMRSSFIEDDHIPFLRRNVPILHLIPVPFPSVWHTPDDNASVIDYATTDNLALIIRLFALEY 344
Cdd:cd03880  240 FQPHSKYTPDIEDDHIPFLERGVPVLHLIPSPFPSVWHTLDDDEENLDYPTIRNWNKILRVFVAEY 305
Peptidase_M28 pfam04389
Peptidase family M28;
117-341 3.15e-52

Peptidase family M28;


Pssm-ID: 461288 [Multi-domain]  Cd Length: 192  Bit Score: 171.31  E-value: 3.15e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108744982  117 NIIATLNPNA-ERYLVLSCHYDSKYMpGVeflGATDSAVPCAMLLNLAQVLQEQLKPlkksKLSLMLLFFDGEEAfeewg 195
Cdd:pfam04389   1 NVIAKLPGKApDEVVLLSAHYDSVGT-GP---GADDNASGVAALLELARVLAAGQRP----KRSVRFLFFDAEEA----- 67
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108744982  196 pkdSIYGARHLAKKwHHEgkLDRIDMLVLLDLLGAPDPAFYSFFENTESWymriqsvetrlaklqLLERYASSGVAQRDP 275
Cdd:pfam04389  68 ---GLLGSHHFAKS-HPP--LKKIRAVINLDMIGSGGPALLFQSGPKGSS---------------LLEKYLKAAAKPYGV 126
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 108744982  276 TRYFQSQAMRSSFIEDDHIPFLRRNVPILHLIPVPFPSVWHTPDDNASVIDYATTDNLALIIRLFA 341
Cdd:pfam04389 127 TLAEDPFQERGGPGRSDHAPFIKAGIPGLDLAFTDFGYRYHTPADTIDNIDPGTLQRIGDLVLALV 192
Iap COG2234
Zn-dependent amino- or carboxypeptidase, M28 family [Posttranslational modification, protein ...
116-352 1.22e-28

Zn-dependent amino- or carboxypeptidase, M28 family [Posttranslational modification, protein turnover, chaperones, Amino acid transport and metabolism];


Pssm-ID: 441835 [Multi-domain]  Cd Length: 257  Bit Score: 111.76  E-value: 1.22e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108744982 116 HNIIATLNP--NAERYLVLSCHYDSKympGVEFLGATDSAVPCAMLLNLAQVLQEQLKPLKKSklsLMLLFFDGEEafee 193
Cdd:COG2234   47 RNVIAEIPGtdPPDEVVVLGAHYDSV---GSIGPGADDNASGVAALLELARALAALGPKPKRT---IRFVAFGAEE---- 116
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108744982 194 WGpkdsIYGARHLAKkwHHEGKLDRIDMLVLLDLLGAPDPAFYSFFENTEswymriqsveTRLAKLQLLERYASSGVAQR 273
Cdd:COG2234  117 QG----LLGSRYYAE--NLKAPLEKIVAVLNLDMIGRGGPRNYLYVDGDG----------GSPELADLLEAAAKAYLPGL 180
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108744982 274 D-PTRYFQSQAMRSsfiedDHIPFLRRNVPILHLIPVPFPS--VWHTPDDNASVIDYattDNLALIIRL-FALEYLLAGT 349
Cdd:COG2234  181 GvDPPEETGGYGRS-----DHAPFAKAGIPALFLFTGAEDYhpDYHTPSDTLDKIDL---DALAKVAQLlAALVYELANA 252

                 ...
gi 108744982 350 EAK 352
Cdd:COG2234  253 DER 255
 
Name Accession Description Interval E-value
M28_QC_like cd03880
M28 Zn-peptidase glutaminyl cyclase; Peptidase M28 family, glutaminyl cyclase (QC; EC 2.3.2.5) ...
54-344 4.89e-161

M28 Zn-peptidase glutaminyl cyclase; Peptidase M28 family, glutaminyl cyclase (QC; EC 2.3.2.5) subfamily. QC is involved in N-terminal glutamine cyclization of many endocrine peptides and is typically abundant in brain tissue. N-terminal glutamine residue cyclization is an important post-translational event in the processing of numerous bioactive proteins, including neuropeptides, hormones, and cytokines during their maturation in the secretory pathway. The N-terminal pGlu protects them from exopeptidase degradation and/or enables them to have proper conformation for binding to their receptors. QCs are highly conserved from yeast to human. In humans, several genetic diseases, such as osteoporosis, appear to result from mutations of the QC gene. N-terminal glutamate cyclization into pyroglutamate (pGlu) is a reaction that may be related to the formation of several plaque-forming peptides, such as amyloid-(A) peptides and collagen-like Alzheimer amyloid plaque component, which play a pivotal role in Alzheimer's disease.


Pssm-ID: 349876 [Multi-domain]  Cd Length: 305  Bit Score: 452.46  E-value: 4.89e-161
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108744982  54 SNLSDKLHLREAIDKILIPRVVGTTNHSIVREYIVQSLRDLD--WDVEVNSFHDHAPIkGKLHFHNIIATLNPNAERYLV 131
Cdd:cd03880    8 ELSDDNEHFNNLLAPILIPRVPGSPGHREVRNFIIDFLKSLLagWTVELDNFTEKTPI-GEVTFTNIIATLNPPAKRYLV 86
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108744982 132 LSCHYDSKYMPGVEFLGATDSAVPCAMLLNLAQVLQEQLK----PLKKSKLSLMLLFFDGEEAFEEWGPKDSIYGARHLA 207
Cdd:cd03880   87 LACHYDSKYFPEGEFIGATDSAVPCAMLLYLARSLDAALTrkwpKSKKSDLGLQLIFFDGEEAFEEWSDTDSLYGSRHLA 166
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108744982 208 KKWH---------HEGKLDRIDMLVLLDLLGAPDPAFYSFFENTESWYMRIQSVETRLAKLQLLERYASSgvaqrdpTRY 278
Cdd:cd03880  167 AKWEstpyppgsrYSGRLDRIDLLVLLDLLGAPNPTFPSYFPNTHGWYKRLADIEKRLRKLGLLESHPSE-------RKY 239
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 108744982 279 FQSQAMRSSFIEDDHIPFLRRNVPILHLIPVPFPSVWHTPDDNASVIDYATTDNLALIIRLFALEY 344
Cdd:cd03880  240 FQPHSKYTPDIEDDHIPFLERGVPVLHLIPSPFPSVWHTLDDDEENLDYPTIRNWNKILRVFVAEY 305
Peptidase_M28 pfam04389
Peptidase family M28;
117-341 3.15e-52

Peptidase family M28;


Pssm-ID: 461288 [Multi-domain]  Cd Length: 192  Bit Score: 171.31  E-value: 3.15e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108744982  117 NIIATLNPNA-ERYLVLSCHYDSKYMpGVeflGATDSAVPCAMLLNLAQVLQEQLKPlkksKLSLMLLFFDGEEAfeewg 195
Cdd:pfam04389   1 NVIAKLPGKApDEVVLLSAHYDSVGT-GP---GADDNASGVAALLELARVLAAGQRP----KRSVRFLFFDAEEA----- 67
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108744982  196 pkdSIYGARHLAKKwHHEgkLDRIDMLVLLDLLGAPDPAFYSFFENTESWymriqsvetrlaklqLLERYASSGVAQRDP 275
Cdd:pfam04389  68 ---GLLGSHHFAKS-HPP--LKKIRAVINLDMIGSGGPALLFQSGPKGSS---------------LLEKYLKAAAKPYGV 126
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 108744982  276 TRYFQSQAMRSSFIEDDHIPFLRRNVPILHLIPVPFPSVWHTPDDNASVIDYATTDNLALIIRLFA 341
Cdd:pfam04389 127 TLAEDPFQERGGPGRSDHAPFIKAGIPGLDLAFTDFGYRYHTPADTIDNIDPGTLQRIGDLVLALV 192
M28 cd02690
M28 Zn-peptidases include aminopeptidases and carboxypeptidases; Peptidase M28 family (also ...
115-344 3.58e-33

M28 Zn-peptidases include aminopeptidases and carboxypeptidases; Peptidase M28 family (also called aminopeptidase Y family) contains aminopeptidases as well as carboxypeptidases. They have co-catalytic zinc ions; each zinc ion is tetrahedrally co-ordinated, with three amino acid ligands plus activated water; one aspartate residue binds both metal ions. The aminopeptidases in this family are also called bacterial leucyl aminopeptidases, but are able to release a variety of N-terminal amino acids. IAP aminopeptidase and aminopeptidase Y preferentially release basic amino acids while glutamate carboxypeptidase II preferentially releases C-terminal glutamates. Plasma glutamate carboxypeptidase (PGCP) and glutamate carboxypeptidase II (NAALADase) hydrolyze dipeptides. Several members of the M28 peptidase family have PA domain inserts which may participate in substrate binding and/or in promoting conformational changes, which influence the stability and accessibility of the site to substrate. These include prostate-specific membrane antigen (PSMA), yeast aminopeptidase S (SGAP), human transferrin receptors (TfR1 and TfR2), plasma glutamate carboxypeptidase (PGCP) and several predicted aminopeptidases where relatively little is known about them. Also included in the M28 family are glutaminyl cyclases (QC), which are involved in N-terminal glutamine cyclization of many endocrine peptides. Nicastrin and nicalin belong to this family but lack the amino-acid conservation required for catalytically active aminopeptidases.


Pssm-ID: 349868 [Multi-domain]  Cd Length: 202  Bit Score: 122.07  E-value: 3.58e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108744982 115 FHNIIATLNP--NAERYLVLSCHYDSKYmpgvEFLGATDSAVPCAMLLNLAQVL-QEQLKPlkksKLSLMLLFFDGEEAF 191
Cdd:cd02690    1 GYNVIATIKGsdKPDEVILIGAHYDSVP----LSPGANDNASGVAVLLELARVLsKLQLKP----KRSIRFAFWDAEELG 72
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108744982 192 eewgpkdsIYGARHLAKkwHHEGKLDRIDMLVLLDLLGAPDPAFY--SFFENTESWYMRIQSVETRLAKLQLLERYassg 269
Cdd:cd02690   73 --------LLGSKYYAE--QLLSSLKNIRAALNLDMIGGAGPDLYlqTAPGNDALVEKLLRALAHELENVVYTVVY---- 138
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 108744982 270 VAQRDPTRyfqsqamrssfieDDHIPFLRRNVPILHLIPVP--FPSVWHTPDDNASVIDYATTDNLALIIRLFALEY 344
Cdd:cd02690  139 KEDGGTGG-------------SDHRPFLARGIPAASLIQSEsyNFPYYHTTQDTLENIDKDTLKRAGDILASFLYRL 202
Iap COG2234
Zn-dependent amino- or carboxypeptidase, M28 family [Posttranslational modification, protein ...
116-352 1.22e-28

Zn-dependent amino- or carboxypeptidase, M28 family [Posttranslational modification, protein turnover, chaperones, Amino acid transport and metabolism];


Pssm-ID: 441835 [Multi-domain]  Cd Length: 257  Bit Score: 111.76  E-value: 1.22e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108744982 116 HNIIATLNP--NAERYLVLSCHYDSKympGVEFLGATDSAVPCAMLLNLAQVLQEQLKPLKKSklsLMLLFFDGEEafee 193
Cdd:COG2234   47 RNVIAEIPGtdPPDEVVVLGAHYDSV---GSIGPGADDNASGVAALLELARALAALGPKPKRT---IRFVAFGAEE---- 116
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108744982 194 WGpkdsIYGARHLAKkwHHEGKLDRIDMLVLLDLLGAPDPAFYSFFENTEswymriqsveTRLAKLQLLERYASSGVAQR 273
Cdd:COG2234  117 QG----LLGSRYYAE--NLKAPLEKIVAVLNLDMIGRGGPRNYLYVDGDG----------GSPELADLLEAAAKAYLPGL 180
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108744982 274 D-PTRYFQSQAMRSsfiedDHIPFLRRNVPILHLIPVPFPS--VWHTPDDNASVIDYattDNLALIIRL-FALEYLLAGT 349
Cdd:COG2234  181 GvDPPEETGGYGRS-----DHAPFAKAGIPALFLFTGAEDYhpDYHTPSDTLDKIDL---DALAKVAQLlAALVYELANA 252

                 ...
gi 108744982 350 EAK 352
Cdd:COG2234  253 DER 255
M28_like cd08656
M28 Zn-peptidase; uncharacterized subfamily; Peptidase family M28 (also called aminopeptidase ...
72-329 1.46e-16

M28 Zn-peptidase; uncharacterized subfamily; Peptidase family M28 (also called aminopeptidase Y family), uncharacterized subfamily. The M28 family contains aminopeptidases as well as carboxypeptidases. They have co-catalytic zinc ions; each zinc ion is tetrahedrally co-ordinated, with three amino acid ligands plus activated water; one aspartate residue binds both metal ions.


Pssm-ID: 349943 [Multi-domain]  Cd Length: 287  Bit Score: 78.72  E-value: 1.46e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108744982  72 PRVVGTTNHSIVREYIVQSLRDLDWDVEvNSFHDHAPIKG-KLHFHNIIATLNPNAERYLVLSCHYDSKYMPGVE----- 145
Cdd:cd08656   16 PRVPNTAAHKACGEYLAGKLEAFGAKVY-NQYADLIAYDGtILKARNIIGAYNPESKKRVLLCAHWDSRPYADNDadpkk 94
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108744982 146 ----FLGATDSAVPCAMLLNLAQVLQEQlkplkKSKLSLMLLFFDGEE----AFEEWGPKDSIY--GARHLAKKWHHEGK 215
Cdd:cd08656   95 hhtpILGANDGASGVGALLEIARQIQQQ-----APAIGIDIIFFDAEDygtpEFYEGKYKSDTWclGSQYWARNPHVQGY 169
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108744982 216 LDRIDmlVLLDLLGAPDPAFYsffenteswymriqsvetrlaKLQLLERYAssgvaqRDPTRYFQSQAMRSSF------- 288
Cdd:cd08656  170 NARYG--ILLD*VGGKNATFL---------------------KEQYSLRTA------RDIVKKIWKTAKRLGYgkyfvpe 220
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|..
gi 108744982 289 ----IEDDHIPFLR-RNVPILHLI------PVPFPSVWHTPDDNASVIDYAT 329
Cdd:cd08656  221 aggtITDDHLYVNQlARIPTIDIInydperPTGFPSYWHTIQDN*ENIDKET 272
M28_like cd03877
M28 Zn-peptidase, many containing a protease-associated (PA) domain insert; Peptidase family ...
116-340 2.62e-13

M28 Zn-peptidase, many containing a protease-associated (PA) domain insert; Peptidase family M28 (also called aminopeptidase Y family), uncharacterized subfamily. The M28 family contains aminopeptidases as well as carboxypeptidases. They have co-catalytic zinc ions; each zinc ion is tetrahedrally co-ordinated, with three amino acid ligands plus activated water; one aspartate residue binds both metal ions. This subfamily is composed of uncharacterized proteins, many of which contain a protease-associated (PA) domain insert which may participate in substrate binding and/or promote conformational changes, influencing the stability and accessibility of the site to substrate. Some proteins in this subfamily are also associated with the PDZ domain, a widespread protein module that has been recruited to serve multiple functions during the course of evolution.


Pssm-ID: 349874 [Multi-domain]  Cd Length: 206  Bit Score: 68.04  E-value: 2.62e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108744982 116 HNIIATLNPN--AERYLVLSCHYDS-KYMPGVEFL----GATDSAVPCAMLLNLAQVLQEQLKPlkksKLSLMLLFFDGE 188
Cdd:cd03877    2 HNVVGVLEGSdlPDETIVIGAHYDHlGIGGGDSGDkiynGADDNASGVAAVLELARYFAKQKTP----KRSIVFAAFTAE 77
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108744982 189 EAfeewgpkdSIYGARHLAKkwHHEGKLDRIDMLVLLDLLGAPDPAFYSFFENTESwymriqsveTRLAK-LQLLERYAS 267
Cdd:cd03877   78 EK--------GLLGSKYFAE--NPKFPLDKIVAMLNLDMIGRLGRSKDVYLIGSGS---------SELENlLKKANKAAG 138
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 108744982 268 SGV--AQRDPTRYFQSqamrssfiedDHIPFLRRNVPILHLIPVPFPSvWHTPDDNASVIDYattDNLALIIRLF 340
Cdd:cd03877  139 RVLskDPLPEWGFFRS----------DHYPFAKAGVPALYFFTGLHDD-YHKPSDDYEKIDY---EGMARVVNLI 199
M28_Fxna_like cd03875
M28 Zn-peptidase Endoplasmic reticulum metallopeptidase 1; Peptidase family M28; Endoplasmic ...
61-191 3.44e-12

M28 Zn-peptidase Endoplasmic reticulum metallopeptidase 1; Peptidase family M28; Endoplasmic reticulum metallopeptidase 1 (ERMP1; Felix-ina, FXNA or Fxna peptidase; KIAA1815) subfamily. ERMP1 is a multi-pass membrane protein located in the endoplasmic reticulum membrane. In humans, Fxna may play a crucial role in processing proteins required for the organization of somatic cells and oocytes into discrete follicular structures, although which proteins are hydrolyzed has not yet been determined. Another member of this subfamily is the 24-kDa vacuolar protein (VP24) which is probably involved in the formation of intravacuolar pigmented globules (cyanoplasts) in highly anthocyanin-containing vacuoles; however, the biological function of the C-terminal region which includes the putative transmembrane metallopeptidase domain is unknown.


Pssm-ID: 349872 [Multi-domain]  Cd Length: 307  Bit Score: 66.46  E-value: 3.44e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108744982  61 HLREAIDKIliPRVVGTTNHSIVREYIVQSLRDL-------DWDVEV-----NSFHDHAPIKGKLHFH---NIIATLNP- 124
Cdd:cd03875   12 DLQVLISIG--PHPYGSHNNDKVRDYLLARVEEIkerananGLEVEVqddtgSGSFNFLSSGMTLVYFevtNIVVRISGk 89
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 108744982 125 --NAERYLVLSCHYDSKyMPGVeflGATDSAVPCAMLLNLAQVLQEQLKPLKKsklSLMLLFFDGEEAF 191
Cdd:cd03875   90 nsNSLPALLLNAHFDSV-PTSP---GATDDGMGVAVMLEVLRYLSKSGHQPKR---DIIFLFNGAEENG 151
M28_like_PA_PDZ_associated cd05663
M28 Zn-peptidase containing a protease-associated (PA) domain insert and associated with a PDZ ...
73-340 1.10e-11

M28 Zn-peptidase containing a protease-associated (PA) domain insert and associated with a PDZ domain; Peptidase family M28 (also called aminopeptidase Y family), uncharacterized subfamily. The M28 family contains aminopeptidases as well as carboxypeptidases. They have co-catalytic zinc ions; each zinc ion is tetrahedrally co-ordinated, with three amino acid ligands plus activated water; one aspartate residue binds both metal ions. This subfamily is composed of uncharacterized proteins, many of which contain a protease-associated (PA) domain insert which may participate in substrate binding and/or promote conformational changes, influencing the stability and accessibility of the site to substrate. Proteins in this subfamily are also associated with the PDZ domain, a widespread protein module that has been recruited to serve multiple functions during the course of evolution.


Pssm-ID: 349913 [Multi-domain]  Cd Length: 266  Bit Score: 64.40  E-value: 1.10e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108744982  73 RVVGTTNHSIVREYIVQSLRDLDW---DVEVNSFHDHAPIKGKLHfhNIIATL---NPNAERYLVLSCHYDSKYMPGVEF 146
Cdd:cd05663   12 RLTGTKGEKLAADYIAQRFEELGLepgLDNGTYFQPFEFTTGTGR--NVIGVLpgkGDVADETVVVGAHYDHLGYGGEGS 89
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108744982 147 L----------GATDSAVPCAMLLNLAQVLQEQLKPLKKSKlSLMLLFFDGEEAfeewgpkdSIYGARHLAKKWHHEGKl 216
Cdd:cd05663   90 LargdeslihnGADDNASGVAAMLELAAKLVDSDTSLALSR-NLVFIAFSGEEL--------GLLGSKHFVKNPPFPIK- 159
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108744982 217 dRIDMLVLLDLLGapdpafySFFENTeswyMRIQSVETRLAKLQLLERYASsgvaqrdpTRYFQSQAMRSSFIEDDHIPF 296
Cdd:cd05663  160 -NTVYMINMDMVG-------RLRDNK----LIVQGTGTSPGWEQLVQARNK--------ATGFKLILDPTGYGPSDHTSF 219
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*..
gi 108744982 297 LRRNVPILHLipvpFP---SVWHTPDDNASVIDYattDNLALIIRLF 340
Cdd:cd05663  220 YLDDVPVLHF----FTgahSDYHRPSDDSDKLNY---DGMADIADFA 259
M28_like_PA cd05661
M28 Zn-peptidase containing a PA domain insert; Peptidase family M28 (also called ...
72-337 2.32e-11

M28 Zn-peptidase containing a PA domain insert; Peptidase family M28 (also called aminopeptidase Y family), uncharacterized subfamily. The M28 family contains aminopeptidases as well as carboxypeptidases. They have co-catalytic zinc ions; each zinc ion is tetrahedrally co-ordinated, with three amino acid ligands plus activated water; one aspartate residue binds both metal ions. This subfamily is composed of uncharacterized proteins containing a protease-associated (PA) domain insert which may participate in substrate binding and/or promote conformational changes, influencing the stability and accessibility of the site to substrate.


Pssm-ID: 349911 [Multi-domain]  Cd Length: 262  Bit Score: 63.36  E-value: 2.32e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108744982  72 PRVVGTTNHSIVREYIVQSLRDLDWDVEVNSFHDhapikgklhfHNIIATLNPNA----ERYLVLSCHYDSkympgVEFL 147
Cdd:cd05661   27 IGVAGTPEELKAARYIEQQLKSLGYEVEVQPFTS----------HNVIATKKPDNnknnNDIIIVTSHYDS-----VVKA 91
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108744982 148 -GATDSAVPCAMLLNLAQVLQEQlkplkKSKLSLMLLFFDGEEAfeewGPKDSIYGARHLAKKwhhegKLDRIDMLVLLD 226
Cdd:cd05661   92 pGANDNASGTAVTLELARVFKKV-----KTDKELRFIAFGAEEN----GLLGSKYYVASLSED-----EIKRTIGVFNLD 157
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108744982 227 LLGAPDPAFYSFFENTeswymrIQSVETRLAKlqlleryASSGVAQRDPTRYFQSQAMRSsfiedDHIPFLRRNVP---I 303
Cdd:cd05661  158 MVGTSDAKAGDLYAYT------IDGKPNLVTD-------SGAAASKRLSGVLPLVQQGSS-----DHVPFHEAGIPaalF 219
                        250       260       270
                 ....*....|....*....|....*....|....*.
gi 108744982 304 LHLIPVPFP--SVWHTPDDNASVIDYATTDNLALII 337
Cdd:cd05661  220 IHMDPETEPvePWYHTPNDTVENISKERLDNALDIV 255
M28_like cd05662
M28 Zn-Peptidases; Peptidase family M28 (also called aminopeptidase Y family), uncharacterized ...
117-327 8.68e-10

M28 Zn-Peptidases; Peptidase family M28 (also called aminopeptidase Y family), uncharacterized subfamily. The M28 family contains aminopeptidases as well as carboxypeptidases. They have co-catalytic zinc ions; each zinc ion is tetrahedrally co-ordinated, with three amino acid ligands plus activated water; one aspartate residue binds both metal ions. This subfamily is composed of uncharacterized proteins that do not contain a protease-associated (PA) domain.


Pssm-ID: 349912 [Multi-domain]  Cd Length: 268  Bit Score: 58.63  E-value: 8.68e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108744982 117 NIIATL--NPNAERYLVLSCHYDSKYMPGVEFL-GATDSAVPCAMLLNLAQVLQEQlkplkKSKLSLMLLFFDGEEAfee 193
Cdd:cd05662   64 NVLAVIkgSEPPTKWRVVSAHYDHLGIRGGKIYnGADDNASGVAALLALAEYFKKH-----PPKHNVIFAATDAEEP--- 135
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108744982 194 wgpkdSIYGARHLAKKWhhEGKLDRIDMLVLLDLLGAPDPAfYSFFENTE--SWYMRIQSVETRLAKLQLLERYASSGVA 271
Cdd:cd05662  136 -----GLRGSYAFVEAL--KVPRAQIELNINLDMISRPERN-ELYVEGASqfPQLTSILENVKGTCIKALHPKDTDGSIG 207
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 108744982 272 QRDPTRyfQSqamrssfiedDHIPFLRRNVPILHLiPVPFPSVWHTPDDNASVIDY 327
Cdd:cd05662  208 SIDWTR--AS----------DHYPFHKAKIPWLYF-GVEDHPDYHKPTDDFETIDQ 250
M28_like_PA cd05660
M28 Zn-peptidase containing a protease-associated (PA) domain insert; Peptidase family M28 ...
116-304 1.38e-07

M28 Zn-peptidase containing a protease-associated (PA) domain insert; Peptidase family M28 (also called aminopeptidase Y family), uncharacterized subfamily. The M28 family contains aminopeptidases as well as carboxypeptidases. They have co-catalytic zinc ions; each zinc ion is tetrahedrally co-ordinated, with three amino acid ligands plus activated water; one aspartate residue binds both metal ions. This subfamily is composed of uncharacterized proteins containing a protease-associated (PA) domain insert which may participate in substrate binding and/or promote conformational changes, influencing the stability and accessibility of the site to substrate.


Pssm-ID: 349910 [Multi-domain]  Cd Length: 290  Bit Score: 52.36  E-value: 1.38e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108744982 116 HNIIATLnPNAER---YLVLSCHYD-----SKYMPGVEFLGATDSAVPCAMLLNLAQVLQEQLKPLKKsklSLMLLFFDG 187
Cdd:cd05660   60 HNVVAIL-PGSKLpdeYIVLSAHWDhlgigPPIGGDEIYNGAVDNASGVAAVLELARVFAAQDQRPKR---SIVFLAVTA 135
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108744982 188 EEAfeewgpkdSIYGARHLAKkwHHEGKLDRIDMLVLLDLLGAPDPAFYSFfenteswymRIQSVETRLAklQLLERYAS 267
Cdd:cd05660  136 EEK--------GLLGSRYYAA--NPIFPLDKIVANLNIDMIGRIGPTKDVL---------LIGSGSSELE--NILKEAAK 194
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 108744982 268 sgvAQR---DPTRYFQsqamRSSFIEDDHIPFLRRNVPIL 304
Cdd:cd05660  195 ---AVGrvvDYDPNPE----NGSFYRSDHYNFAKKGVPVL 227
Nicastrin pfam05450
Nicastrin; Nicastrin and presenilin are two major components of the gamma-secretase complex, ...
128-331 2.64e-06

Nicastrin; Nicastrin and presenilin are two major components of the gamma-secretase complex, which executes the intramembrane proteolysis of type I integral membrane proteins such as the amyloid precursor protein (APP) and Notch. Nicastrin is synthesized in fibroblasts and neurons as an endoglycosidase-H-sensitive glycosylated precursor protein (immature nicastrin) and is then modified by complex glycosylation in the Golgi apparatus and by sialylation in the trans-Golgi network (mature nicastrin). A region featured in this family has a fold similar to human transferrin receptor (TfR) and a bacterial aminopeptidase. It is implicated in the pathogenesis of Alzheimer's disease.


Pssm-ID: 310213 [Multi-domain]  Cd Length: 227  Bit Score: 47.93  E-value: 2.64e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108744982  128 RYLVLSCHYDSKYM-PGVEfLGATDSAVPCAMLLNLAQVLQEQLKPLKKSKLSLMLLFFDGeEAFEEWGPKDSIY----G 202
Cdd:pfam05450   1 KVVLVTARMDSTSMfDGVS-LGAMSSLSGFIVLLAAADALSKALPDISNLKRNVLFAFFNG-ESYDYIGSQRFVYdmenG 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108744982  203 ARHLAKKWHHEGKLDRIDMLVLLDLLG-APDPAFYSFFENTeswymRIQSVETRLakLQLLERYASSGVaqrdptryFQS 281
Cdd:pfam05450  79 KFPSDRTHTHPISPDNIDYMLEIGQVGkATSRKFYLHVDAA-----RNQSVKTQT--LDLLDRIEKSLR--------SGN 143
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 108744982  282 QAMRSSFIEDDHIP------FLRRNVPILHLIPVPFPSV-----WHTPDDNASVIDYATTD 331
Cdd:pfam05450 144 FKVLPASTSNPGLPpsslqsFLRANPNFSAVVLADRPTEfenrfYHSILDDAENINSDTED 204
M28_PMSA_TfR_like cd03874
M28 Zn-peptidase Transferrin Receptor-like family; Peptidase M28 family; Transferrin Receptor ...
56-189 6.86e-04

M28 Zn-peptidase Transferrin Receptor-like family; Peptidase M28 family; Transferrin Receptor (TfR) and prostate-specific membrane antigen (PSMA, also called glutamate carboxypeptidase or GCP-II) subfamily. TfR and PSMA are homodimeric type II transmembrane proteins containing three distinct domains: protease-like, apical or protease-associated (PA) and helical domains. The protease-like domain is a large extracellular portion (ectodomain). In TfR, it contains a binding site for the transferrin molecule and has 28% identity to membrane glutamate carboxypeptidase II (mGCP-II or PSMA). The PA domain is inserted between the first and second strands of the central beta sheet in the protease-like domain. TfR1 is widely expressed, and is a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and the complex is then internalized. TfR1 may also participate in cell growth and proliferation. TfR2 binds Tf but with a significantly lower affinity than TfR1. It is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis; in humans, mutations in TfR2 are associated with a form of hemochromatosis (HFE3). PSMA is over-expressed predominantly in prostate cancer (PCa) as well as in the neovasculature of most solid tumors, but not in the vasculature of normal tissues. PSMA is considered a biomarker for PCa and possibly for use as an imaging and therapeutic target. The extracellular domain of PSMA possesses two unique enzymatic functions: N-acetylated, alpha-linked acidic dipeptidase (NAALADase) which cleaves terminal glutamate from the neurodipeptide N-acetyl-aspartyl-glutamate (NAAG), and folate hydrolase (FOLH) which cleaves the terminal glutamates from gamma-linked polyglutamates (carboxypeptidase). A mutation in this gene may be associated with impaired intestinal absorption of dietary folates, resulting in low blood folate levels and consequent hyperhomocysteinemia. Expression of this protein in the brain may be involved in a number of pathological conditions associated with glutamate excitotoxicity. This gene likely arose from a duplication event of a nearby chromosomal region. Alternative splicing gives rise to multiple transcript variants. While related in sequence to peptidase M28 GCP-II, TfR lacks the metal ion coordination centers and protease activity.


Pssm-ID: 349871 [Multi-domain]  Cd Length: 278  Bit Score: 40.74  E-value: 6.86e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 108744982  56 LSDKLHLREAIDKIL-IPRVVGTTNHSIVREYIVQSLRDLDWDvEVnSFHDHAPIkgklhfHNIIATLNPN--AERYLVL 132
Cdd:cd03874    5 LVDLAKIKEDLEYLSsMPHMAGTKGDAALAKYIENSFKNNGLF-EV-ELEEYSPI------TNVVGKIEGIeqPDRAIII 76
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 108744982 133 SCHYDSKYMpgveflGATDSAVPCAMLLNLAQVLQE-----QLKPLKksklSLMLLFFDGEE 189
Cdd:cd03874   77 GAHRDSWGY------GAGYPNSGTAVLLEIARLFQQlkkkfGWKPLR----TIYFISWDGSE 128
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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