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Conserved domains on  [gi|120596575|gb|ABM40011|]
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conserved hypothetical protein (plasmid) [Polaromonas naphthalenivorans CJ2]

Protein Classification

DUF3024 domain-containing protein( domain architecture ID 10567901)

DUF3024 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF3024 pfam11225
Protein of unknown function (DUF3024); This family of proteins has no known function.
 61-116 6.00e-23

Protein of unknown function (DUF3024); This family of proteins has no known function.


:

Pssm-ID: 431740  Cd Length: 56  Bit Score: 83.92  E-value: 6.00e-23
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 120596575   61 HESPVAKATFVRTQGLWKVFWMRADLKWHGYQPKAEVNTLKEFLGAFDRDEHGCFF 116
Cdd:pfam11225   1 YESPIAKLRFDETTGLWKLYWMDRDLKWHPYPDLPPSKDLEALLEEVESDPDGCFW 56
 
Name Accession Description Interval E-value
DUF3024 pfam11225
Protein of unknown function (DUF3024); This family of proteins has no known function.
 61-116 6.00e-23

Protein of unknown function (DUF3024); This family of proteins has no known function.


Pssm-ID: 431740  Cd Length: 56  Bit Score: 83.92  E-value: 6.00e-23
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 120596575   61 HESPVAKATFVRTQGLWKVFWMRADLKWHGYQPKAEVNTLKEFLGAFDRDEHGCFF 116
Cdd:pfam11225   1 YESPIAKLRFDETTGLWKLYWMDRDLKWHPYPDLPPSKDLEALLEEVESDPDGCFW 56
 
Name Accession Description Interval E-value
DUF3024 pfam11225
Protein of unknown function (DUF3024); This family of proteins has no known function.
 61-116 6.00e-23

Protein of unknown function (DUF3024); This family of proteins has no known function.


Pssm-ID: 431740  Cd Length: 56  Bit Score: 83.92  E-value: 6.00e-23
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 120596575   61 HESPVAKATFVRTQGLWKVFWMRADLKWHGYQPKAEVNTLKEFLGAFDRDEHGCFF 116
Cdd:pfam11225   1 YESPIAKLRFDETTGLWKLYWMDRDLKWHPYPDLPPSKDLEALLEEVESDPDGCFW 56
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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