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Conserved domains on  [gi|120608348|gb|ABM44088|]
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protein of unknown function DUF1010 [Acidovorax sp. JS42]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF1010 super family cl05638
Protein of unknown function (DUF1010); Family of plasmid encoded proteins with unknown ...
 1-81 2.67e-28

Protein of unknown function (DUF1010); Family of plasmid encoded proteins with unknown function.


The actual alignment was detected with superfamily member pfam06231:

Pssm-ID: 283811  Cd Length: 81  Bit Score: 97.03  E-value: 2.67e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 120608348   1 MRAATYSSAMPCSKGFQAFLGSSACAASATSYHFCSAAPLSWPSAFSWAAPLSKSGRSLLAFGSNPAFKPTRLRRAAYLG 80
Cdd:pfam06231  1 MRAATYSSARPCSKGFQAFLASSACAASATSYHSCSAAPLPWPSAFSWAAPVFKAGRSLLAFGSNSAMKRTRLRRAAYLG 80


                 .
gi 120608348  81 R 81
Cdd:pfam06231 81 R 81
 
Name Accession Description Interval E-value
DUF1010 pfam06231
Protein of unknown function (DUF1010); Family of plasmid encoded proteins with unknown ...
 1-81 2.67e-28

Protein of unknown function (DUF1010); Family of plasmid encoded proteins with unknown function.


Pssm-ID: 283811  Cd Length: 81  Bit Score: 97.03  E-value: 2.67e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 120608348   1 MRAATYSSAMPCSKGFQAFLGSSACAASATSYHFCSAAPLSWPSAFSWAAPLSKSGRSLLAFGSNPAFKPTRLRRAAYLG 80
Cdd:pfam06231  1 MRAATYSSARPCSKGFQAFLASSACAASATSYHSCSAAPLPWPSAFSWAAPVFKAGRSLLAFGSNSAMKRTRLRRAAYLG 80


                 .
gi 120608348  81 R 81
Cdd:pfam06231 81 R 81
 
Name Accession Description Interval E-value
DUF1010 pfam06231
Protein of unknown function (DUF1010); Family of plasmid encoded proteins with unknown ...
 1-81 2.67e-28

Protein of unknown function (DUF1010); Family of plasmid encoded proteins with unknown function.


Pssm-ID: 283811  Cd Length: 81  Bit Score: 97.03  E-value: 2.67e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 120608348   1 MRAATYSSAMPCSKGFQAFLGSSACAASATSYHFCSAAPLSWPSAFSWAAPLSKSGRSLLAFGSNPAFKPTRLRRAAYLG 80
Cdd:pfam06231  1 MRAATYSSARPCSKGFQAFLASSACAASATSYHSCSAAPLPWPSAFSWAAPVFKAGRSLLAFGSNSAMKRTRLRRAAYLG 80


                 .
gi 120608348  81 R 81
Cdd:pfam06231 81 R 81
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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