|
Name |
Accession |
Description |
Interval |
E-value |
| DUF3560 |
pfam12083 |
Domain of unknown function (DUF3560); This presumed domain is functionally uncharacterized. ... |
71-193 |
1.27e-41 |
|
Domain of unknown function (DUF3560); This presumed domain is functionally uncharacterized. This domain is found in bacteria. This domain is about 120 amino acids in length. This domain has a conserved GHHSE sequence motif.
Pssm-ID: 432317 [Multi-domain] Cd Length: 124 Bit Score: 147.10 E-value: 1.27e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 120608568 71 SLVERAEERADRFEDYSDKRADDAAAARNAVQAIGQRFEFGQPILVGHHSERKARKDAERMENGMRRAVQMWETSEYWKQ 150
Cdd:pfam12083 1 SREERAEARAERYEDYADRAAARADAAYAAADSMADAIPLGQPILVGHHSEKRHRRYRERIWNNMGKAVEESDKAEYYEQ 80
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 120608568 151 RAAGALRHAK-YKELPAVRHRRIKGLEADKRKQERSKQEAEMWL 193
Cdd:pfam12083 81 RAAAAESNASiSLDDPDAIERRIKKLEAEKRKQERMKAANEIIL 124
|
|
| UbiE |
COG2226 |
Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG [Coenzyme transport and metabolism]; ... |
504-631 |
7.17e-15 |
|
Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG [Coenzyme transport and metabolism]; Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG is part of the Pathway/BioSystem: Biotin biosynthesis
Pssm-ID: 441828 [Multi-domain] Cd Length: 143 Bit Score: 71.95 E-value: 7.17e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 120608568 504 DLAARMVELADIEPGMRVLEPSAGTGRILEQLPE-GCEVVAVEINAALggrLD-ADRRAVVIG---DFLQCTPETLW--- 575
Cdd:COG2226 9 DGREALLAALGLRPGARVLDLGCGTGRLALALAErGARVTGVDISPEM---LElARERAAEAGlnvEFVVGDAEDLPfpd 85
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 120608568 576 GSFDRIVMNPPFANADDI-KHIRHALRFLKPGGKLVAICANGPrQNAQLRPLVEQHG 631
Cdd:COG2226 86 GSFDLVISSFVLHHLPDPeRALAEIARVLKPGGRLVVVDFSPP-DLAELEELLAEAG 141
|
|
| AdoMet_MTases |
cd02440 |
S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; ... |
520-613 |
6.85e-10 |
|
S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Pssm-ID: 100107 [Multi-domain] Cd Length: 107 Bit Score: 56.67 E-value: 6.85e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 120608568 520 RVLEPSAGTGRILEQL--PEGCEVVAVEINAAL-------GGRLDADRRAVVIGDFLQCTPETLwGSFDRIVMNPPF-AN 589
Cdd:cd02440 1 RVLDLGCGTGALALALasGPGARVTGVDISPVAlelarkaAAALLADNVEVLKGDAEELPPEAD-ESFDVIISDPPLhHL 79
|
90 100
....*....|....*....|....*
gi 120608568 590 ADDIKH-IRHALRFLKPGGKLVAIC 613
Cdd:cd02440 80 VEDLARfLEEARRLLKPGGVLVLTL 104
|
|
| rADc |
smart00650 |
Ribosomal RNA adenine dimethylases; |
505-600 |
2.69e-08 |
|
Ribosomal RNA adenine dimethylases;
Pssm-ID: 128898 Cd Length: 169 Bit Score: 53.67 E-value: 2.69e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 120608568 505 LAARMVELADIEPGMRVLEPSAGTGRILEQLPE-GCEVVAVEINAALGGRL-----DADRRAVVIGDFLQCTPETLwgSF 578
Cdd:smart00650 1 VIDKIVRAANLRPGDTVLEIGPGKGALTEELLErAKRVTAIEIDPRLAPRLrekfaAADNLTVIHGDALKFDLPKL--QP 78
|
90 100
....*....|....*....|..
gi 120608568 579 DRIVMNPPFANADDIkhIRHAL 600
Cdd:smart00650 79 YKVVGNLPYNISTPI--LFKLL 98
|
|
| methyltran_FxLD |
TIGR04364 |
methyltransferase, FxLD system; Members of this family resemble occur regularly in the ... |
483-610 |
1.90e-07 |
|
methyltransferase, FxLD system; Members of this family resemble occur regularly in the vicinity of lantibiotic biosynthesis enzymes and their probable target, the FxLD family of putative ribosomal natural product precursor (TIGR04363). Members resemble protein-L-isoaspartate O-methyltransferase (TIGR00080) and a predicted methyltranserase, TIGR04188, of another putative peptide modification system.
Pssm-ID: 275158 Cd Length: 394 Bit Score: 53.91 E-value: 1.90e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 120608568 483 RDQLKAGVQVVSAPQLfptpadlAARMVELADIEPGMRVLEPSAG---TGRILEQLPEGCEVVAVEINAALGGR----LD 555
Cdd:TIGR04364 55 RDEDGRALSSVSAPHI-------QAMMLEQAGVEPGMRVLEIGSGgynAALLAELVGPSGEVTTVDIDEDVTDRaracLA 127
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 120608568 556 A---DRRAVVIGDFLQCTPETlwGSFDRIVMNppfANADDIKHIrhALRFLKPGGKLV 610
Cdd:TIGR04364 128 AagyPQVTVVLADAEAGVPEL--APYDRIIVT---VGAWDIPPA--WLDQLAPGGRLV 178
|
|
| Methyltransf_25 |
pfam13649 |
Methyltransferase domain; This family appears to be a methyltransferase domain. |
521-607 |
6.94e-07 |
|
Methyltransferase domain; This family appears to be a methyltransferase domain.
Pssm-ID: 463945 [Multi-domain] Cd Length: 96 Bit Score: 47.94 E-value: 6.94e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 120608568 521 VLEPSAGTGRILEQLPE--GCEVVAVEINAALggrLD-ADRRAVVIG---DFLQCTPETL---WGSFDRIVMNPPF---A 588
Cdd:pfam13649 1 VLDLGCGTGRLTLALARrgGARVTGVDLSPEM---LErARERAAEAGlnvEFVQGDAEDLpfpDGSFDLVVSSGVLhhlP 77
|
90
....*....|....*....
gi 120608568 589 NADDIKHIRHALRFLKPGG 607
Cdd:pfam13649 78 DPDLEAALREIARVLKPGG 96
|
|
| PRK14968 |
PRK14968 |
putative methyltransferase; Provisional |
502-587 |
7.59e-06 |
|
putative methyltransferase; Provisional
Pssm-ID: 237872 [Multi-domain] Cd Length: 188 Bit Score: 46.82 E-value: 7.59e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 120608568 502 PADLAARMVELADIEPGMRVLEPSAGTGRILEQLP-EGCEVVAVEIN------AALGGRLDADRRA---VVIGDFLQCTP 571
Cdd:PRK14968 8 PAEDSFLLAENAVDKKGDRVLEVGTGSGIVAIVAAkNGKKVVGVDINpyavecAKCNAKLNNIRNNgveVIRSDLFEPFR 87
|
90
....*....|....*.
gi 120608568 572 EtlwGSFDRIVMNPPF 587
Cdd:PRK14968 88 G---DKFDVILFNPPY 100
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| DUF3560 |
pfam12083 |
Domain of unknown function (DUF3560); This presumed domain is functionally uncharacterized. ... |
71-193 |
1.27e-41 |
|
Domain of unknown function (DUF3560); This presumed domain is functionally uncharacterized. This domain is found in bacteria. This domain is about 120 amino acids in length. This domain has a conserved GHHSE sequence motif.
Pssm-ID: 432317 [Multi-domain] Cd Length: 124 Bit Score: 147.10 E-value: 1.27e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 120608568 71 SLVERAEERADRFEDYSDKRADDAAAARNAVQAIGQRFEFGQPILVGHHSERKARKDAERMENGMRRAVQMWETSEYWKQ 150
Cdd:pfam12083 1 SREERAEARAERYEDYADRAAARADAAYAAADSMADAIPLGQPILVGHHSEKRHRRYRERIWNNMGKAVEESDKAEYYEQ 80
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 120608568 151 RAAGALRHAK-YKELPAVRHRRIKGLEADKRKQERSKQEAEMWL 193
Cdd:pfam12083 81 RAAAAESNASiSLDDPDAIERRIKKLEAEKRKQERMKAANEIIL 124
|
|
| UbiE |
COG2226 |
Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG [Coenzyme transport and metabolism]; ... |
504-631 |
7.17e-15 |
|
Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG [Coenzyme transport and metabolism]; Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG is part of the Pathway/BioSystem: Biotin biosynthesis
Pssm-ID: 441828 [Multi-domain] Cd Length: 143 Bit Score: 71.95 E-value: 7.17e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 120608568 504 DLAARMVELADIEPGMRVLEPSAGTGRILEQLPE-GCEVVAVEINAALggrLD-ADRRAVVIG---DFLQCTPETLW--- 575
Cdd:COG2226 9 DGREALLAALGLRPGARVLDLGCGTGRLALALAErGARVTGVDISPEM---LElARERAAEAGlnvEFVVGDAEDLPfpd 85
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 120608568 576 GSFDRIVMNPPFANADDI-KHIRHALRFLKPGGKLVAICANGPrQNAQLRPLVEQHG 631
Cdd:COG2226 86 GSFDLVISSFVLHHLPDPeRALAEIARVLKPGGRLVVVDFSPP-DLAELEELLAEAG 141
|
|
| COG2263 |
COG2263 |
Predicted RNA methylase [General function prediction only]; |
499-601 |
1.80e-13 |
|
Predicted RNA methylase [General function prediction only];
Pssm-ID: 441864 [Multi-domain] Cd Length: 199 Bit Score: 69.55 E-value: 1.80e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 120608568 499 FPTPADLAARMVELADIE---PGMRVLEPSAGTGR--ILEQLPEGCEVVAVEIN-AALG-GRLDADRRAVVIgDFLQC-- 569
Cdd:COG2263 24 YPTPAELAAELLHLAYLRgdiEGKTVLDLGCGTGMlaIGAALLGAKKVVGVDIDpEALEiARENAERLGVRV-DFIRAdv 102
|
90 100 110
....*....|....*....|....*....|....*.
gi 120608568 570 TPETLWGSFDRIVMNPPF----ANAdDIKHIRHALR 601
Cdd:COG2263 103 TRIPLGGSVDTVVMNPPFgaqrRHA-DRPFLEKALE 137
|
|
| HsdM |
COG0286 |
Type I restriction-modification system, DNA methylase subunit [Defense mechanisms]; |
499-657 |
4.56e-13 |
|
Type I restriction-modification system, DNA methylase subunit [Defense mechanisms];
Pssm-ID: 440055 [Multi-domain] Cd Length: 243 Bit Score: 69.45 E-value: 4.56e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 120608568 499 FPTPADLAARMVELADIEPGMRVLEPSAGTG--------RILEQLPE--------GCEVV--AVEI---NAALGGRLDAD 557
Cdd:COG0286 25 FYTPREVVRLMVELLDPKPGETVYDPACGSGgflveaaeYLKEHGGDerkklslyGQEINptTYRLakmNLLLHGIGDPN 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 120608568 558 rraVVIGDFLQCTPETLwGSFDRIVMNPPFANADDIKHIR-----------------------HALRFLKPGGKLVAICA 614
Cdd:COG0286 105 ---IELGDTLSNDGDEL-EKFDVVLANPPFGGKWKKEELKddllgrfgyglppksnadllflqHILSLLKPGGRAAVVLP 180
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 120608568 615 NGprqnaqlrPLVEQHGGEW-----EN--------LPPDTFAesGTAVNTALFTLT 657
Cdd:COG0286 181 DG--------VLFRGAEKEIrkkllENdlleaiigLPSNLFY--NTGIPTCILFLT 226
|
|
| Pcm |
COG2518 |
Protein-L-isoaspartate O-methyltransferase [Posttranslational modification, protein turnover, ... |
469-635 |
1.10e-12 |
|
Protein-L-isoaspartate O-methyltransferase [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 442008 [Multi-domain] Cd Length: 197 Bit Score: 67.04 E-value: 1.10e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 120608568 469 TDKR--AAMA----EDF--QAMRDQ--------LKAGvQVVSAPqlfptpaDLAARMVELADIEPGMRVLEPSAGTG--- 529
Cdd:COG2518 10 TDPRvlDAMRavprELFvpEALRELayadralpIGHG-QTISQP-------YIVARMLEALDLKPGDRVLEIGTGSGyqa 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 120608568 530 RILEQLpeGCEVVAVEINAALGGR-------LDADRRAVVIGDFLQCTPETlwGSFDRIVMNppfANADDI-KHIRHAlr 601
Cdd:COG2518 82 AVLARL--AGRVYSVERDPELAERarerlaaLGYDNVTVRVGDGALGWPEH--APFDRIIVT---AAAPEVpEALLEQ-- 152
|
170 180 190
....*....|....*....|....*....|....
gi 120608568 602 fLKPGGKLVAICANGPRQNAQlrpLVEQHGGEWE 635
Cdd:COG2518 153 -LAPGGRLVAPVGEGGVQRLV---LITRTGDGFE 182
|
|
| Trm11 |
COG1041 |
tRNA G10 N-methylase Trm11 [Translation, ribosomal structure and biogenesis]; tRNA G10 ... |
505-610 |
3.96e-12 |
|
tRNA G10 N-methylase Trm11 [Translation, ribosomal structure and biogenesis]; tRNA G10 N-methylase Trm11 is part of the Pathway/BioSystem: tRNA modification
Pssm-ID: 440663 [Multi-domain] Cd Length: 172 Bit Score: 64.97 E-value: 3.96e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 120608568 505 LAARMVELADIEPGMRVLEPSAGTGRIL-EQLPEGCEVVAVEIN--AALGGR-----LDADRRAVVIGDFlqCTPETLWG 576
Cdd:COG1041 14 LARALVNLAGAKEGDTVLDPFCGTGTILiEAGLLGRRVIGSDIDpkMVEGARenlehYGYEDADVIRGDA--RDLPLADE 91
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 120608568 577 SFDRIVMNPPFANA--------DDI--KHIRHALRFLKPGGKLV 610
Cdd:COG1041 92 SVDAIVTDPPYGRSskisgeelLELyeKALEEAARVLKPGGRVV 135
|
|
| TrmN6 |
COG4123 |
tRNA1(Val) A37 N6-methylase TrmN6 [Translation, ribosomal structure and biogenesis]; tRNA1(Val) ... |
505-612 |
1.50e-10 |
|
tRNA1(Val) A37 N6-methylase TrmN6 [Translation, ribosomal structure and biogenesis]; tRNA1(Val) A37 N6-methylase TrmN6 is part of the Pathway/BioSystem: tRNA modification
Pssm-ID: 443299 [Multi-domain] Cd Length: 238 Bit Score: 61.70 E-value: 1.50e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 120608568 505 LAArmveLADIEPGMRVLEPSAGTGRI---LEQLPEGCEVVAVEI----------NAALGGRldADRRAVVIGDFLQCTP 571
Cdd:COG4123 29 LAA----FAPVKKGGRVLDLGTGTGVIalmLAQRSPGARITGVEIqpeaaelarrNVALNGL--EDRITVIHGDLKEFAA 102
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 120608568 572 ETLWGSFDRIVMNPPF-------ANADDIKHI-RH------------ALRFLKPGGKLVAI 612
Cdd:COG4123 103 ELPPGSFDLVVSNPPYfkagsgrKSPDEARAIaRHedaltledliraAARLLKPGGRFALI 163
|
|
| AdoMet_MTases |
cd02440 |
S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; ... |
520-613 |
6.85e-10 |
|
S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Pssm-ID: 100107 [Multi-domain] Cd Length: 107 Bit Score: 56.67 E-value: 6.85e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 120608568 520 RVLEPSAGTGRILEQL--PEGCEVVAVEINAAL-------GGRLDADRRAVVIGDFLQCTPETLwGSFDRIVMNPPF-AN 589
Cdd:cd02440 1 RVLDLGCGTGALALALasGPGARVTGVDISPVAlelarkaAAALLADNVEVLKGDAEELPPEAD-ESFDVIISDPPLhHL 79
|
90 100
....*....|....*....|....*
gi 120608568 590 ADDIKH-IRHALRFLKPGGKLVAIC 613
Cdd:cd02440 80 VEDLARfLEEARRLLKPGGVLVLTL 104
|
|
| Cfa |
COG2230 |
Cyclopropane fatty-acyl-phospholipid synthase and related methyltransferases [Lipid transport ... |
498-610 |
1.32e-09 |
|
Cyclopropane fatty-acyl-phospholipid synthase and related methyltransferases [Lipid transport and metabolism];
Pssm-ID: 441831 [Multi-domain] Cd Length: 158 Bit Score: 57.25 E-value: 1.32e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 120608568 498 LFPTPADLAARMVELADIEPGMRVLEPSAGTGRILEQLPE--GCEVVAVEI--------NAALGGRLDADRRAVVIGDFL 567
Cdd:COG2230 32 LEEAQEAKLDLILRKLGLKPGMRVLDIGCGWGGLALYLARryGVRVTGVTLspeqleyaRERAAEAGLADRVEVRLADYR 111
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 120608568 568 QCTPEtlwGSFDRIV---MNPPFANADDIKHIRHALRFLKPGGKLV 610
Cdd:COG2230 112 DLPAD---GQFDAIVsigMFEHVGPENYPAYFAKVARLLKPGGRLL 154
|
|
| COG3963 |
COG3963 |
Phosphatidylethanolamine N-methyltransferase [Lipid transport and metabolism]; |
505-639 |
2.09e-09 |
|
Phosphatidylethanolamine N-methyltransferase [Lipid transport and metabolism];
Pssm-ID: 443163 Cd Length: 193 Bit Score: 57.53 E-value: 2.09e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 120608568 505 LAARMVELADIEPGMRVLEPSAGTG----RILEQLPEGCEVVAVEINAALGGRLDAD-RRAVVI----GDFLQCTPETLW 575
Cdd:COG3963 33 LARAMASEVDWSGAGPVVELGPGTGvftrAILARGVPDARLLAVEINPEFAEHLRRRfPRVTVVngdaEDLAELLAEHGI 112
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 120608568 576 GSFDRIVMNPPFAN-----ADDIkhIRHALRFLKPGGKLVAIC--ANGPRQNAQLRPLVEQH--GGEWENLPP 639
Cdd:COG3963 113 GKVDAVVSGLPLLSfppelRRAI--LDAAFRVLAPGGVFVQFTysPRSPVPRKLLRRGFEAVrsGFVWRNLPP 183
|
|
| UbiG |
COG2227 |
2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme transport and ... |
515-610 |
1.18e-08 |
|
2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme transport and metabolism]; 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase is part of the Pathway/BioSystem: Ubiquinone biosynthesis
Pssm-ID: 441829 [Multi-domain] Cd Length: 126 Bit Score: 53.87 E-value: 1.18e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 120608568 515 IEPGMRVLEPSAGTGRILEQL-PEGCEVVAVEINAALGGRldADRRAVVIG-DFLQCTPETL---WGSFDRIVMN----- 584
Cdd:COG2227 22 LPAGGRVLDVGCGTGRLALALaRRGADVTGVDISPEALEI--ARERAAELNvDFVQGDLEDLpleDGSFDLVICSevleh 99
|
90 100
....*....|....*....|....*..
gi 120608568 585 -PpfanaDDIKHIRHALRFLKPGGKLV 610
Cdd:COG2227 100 lP-----DPAALLRELARLLKPGGLLL 121
|
|
| rADc |
smart00650 |
Ribosomal RNA adenine dimethylases; |
505-600 |
2.69e-08 |
|
Ribosomal RNA adenine dimethylases;
Pssm-ID: 128898 Cd Length: 169 Bit Score: 53.67 E-value: 2.69e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 120608568 505 LAARMVELADIEPGMRVLEPSAGTGRILEQLPE-GCEVVAVEINAALGGRL-----DADRRAVVIGDFLQCTPETLwgSF 578
Cdd:smart00650 1 VIDKIVRAANLRPGDTVLEIGPGKGALTEELLErAKRVTAIEIDPRLAPRLrekfaAADNLTVIHGDALKFDLPKL--QP 78
|
90 100
....*....|....*....|..
gi 120608568 579 DRIVMNPPFANADDIkhIRHAL 600
Cdd:smart00650 79 YKVVGNLPYNISTPI--LFKLL 98
|
|
| Gcd14 |
COG2519 |
tRNA A58 N-methylase Trm61 [Translation, ribosomal structure and biogenesis]; tRNA A58 ... |
486-615 |
5.75e-08 |
|
tRNA A58 N-methylase Trm61 [Translation, ribosomal structure and biogenesis]; tRNA A58 N-methylase Trm61 is part of the Pathway/BioSystem: tRNA modification
Pssm-ID: 442009 [Multi-domain] Cd Length: 249 Bit Score: 54.40 E-value: 5.75e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 120608568 486 LKAGVQVVSapqlfptPADlAARMVELADIEPGMRVLEpsAGTG---------RILEqlPEGcEVVAVEI---------- 546
Cdd:COG2519 68 MKRGTQIIY-------PKD-AGYIIARLDIFPGARVLE--AGTGsgaltlalaRAVG--PEG-KVYSYERredfaeiark 134
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 120608568 547 NAALGGRLDADRraVVIGDFLQCTPEtlwGSFDRIVMNPPfanaDDIKHIRHALRFLKPGGKLVAICAN 615
Cdd:COG2519 135 NLERFGLPDNVE--LKLGDIREGIDE---GDVDAVFLDMP----DPWEALEAVAKALKPGGVLVAYVPT 194
|
|
| YtxK |
COG0827 |
Adenine-specific DNA N6-methylase [Replication, recombination and repair]; |
465-630 |
1.15e-07 |
|
Adenine-specific DNA N6-methylase [Replication, recombination and repair];
Pssm-ID: 440589 [Multi-domain] Cd Length: 327 Bit Score: 54.18 E-value: 1.15e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 120608568 465 SAESTDKRAAM-AEDFQAMRDQLKAGVQvvsapqlfPTPADLA---ARMVELADIEPGMRVLEPSAGTGR----ILEQLP 536
Cdd:COG0827 67 SLSKEEIRKALqLALLKGMKESVQPNHQ--------MTPDAIGlliGYLVEKFTKKEGLRILDPAVGTGNllttVLNQLK 138
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 120608568 537 EGCEVVAVEINAALG---------GRLDADrraVVIGDFLQctpETLWGSFDRIVMNPP------------FANADDIKH 595
Cdd:COG0827 139 KKVNAYGVEVDDLLIrlaavlanlQGHPVE---LFHQDALQ---PLLIDPVDVVISDLPvgyypnderakrFKLKADEGH 212
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 120608568 596 -------IRHALRFLKPGGKLVAICANG---PRQNAQLRPLVEQH 630
Cdd:COG0827 213 syahhlfIEQSLNYLKPGGYLFFLVPSNlfeSDQAAQLREFLKEK 257
|
|
| RsmC |
COG2813 |
16S rRNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]; 16S rRNA ... |
489-610 |
1.46e-07 |
|
16S rRNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]; 16S rRNA G1207 methylase RsmC is part of the Pathway/BioSystem: 16S rRNA modification
Pssm-ID: 442062 [Multi-domain] Cd Length: 191 Bit Score: 52.11 E-value: 1.46e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 120608568 489 GVQVVSAPQLF-PTPADLAAR-MVELADIEPGMRVLEPSAGTG----RILEQLPEgCEVVAVEI----------NAALGG 552
Cdd:COG2813 19 DLTFVTLPGVFsRDRLDIGTRlLLEHLPEPLGGRVLDLGCGYGviglALAKRNPE-ARVTLVDVnaravelaraNAAANG 97
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 120608568 553 RLDADrraVVIGDFLQCTPEtlwGSFDRIVMNPPF----ANADDIKH--IRHALRFLKPGGKLV 610
Cdd:COG2813 98 LENVE---VLWSDGLSGVPD---GSFDLILSNPPFhagrAVDKEVAHalIADAARHLRPGGELW 155
|
|
| methyltran_FxLD |
TIGR04364 |
methyltransferase, FxLD system; Members of this family resemble occur regularly in the ... |
483-610 |
1.90e-07 |
|
methyltransferase, FxLD system; Members of this family resemble occur regularly in the vicinity of lantibiotic biosynthesis enzymes and their probable target, the FxLD family of putative ribosomal natural product precursor (TIGR04363). Members resemble protein-L-isoaspartate O-methyltransferase (TIGR00080) and a predicted methyltranserase, TIGR04188, of another putative peptide modification system.
Pssm-ID: 275158 Cd Length: 394 Bit Score: 53.91 E-value: 1.90e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 120608568 483 RDQLKAGVQVVSAPQLfptpadlAARMVELADIEPGMRVLEPSAG---TGRILEQLPEGCEVVAVEINAALGGR----LD 555
Cdd:TIGR04364 55 RDEDGRALSSVSAPHI-------QAMMLEQAGVEPGMRVLEIGSGgynAALLAELVGPSGEVTTVDIDEDVTDRaracLA 127
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 120608568 556 A---DRRAVVIGDFLQCTPETlwGSFDRIVMNppfANADDIKHIrhALRFLKPGGKLV 610
Cdd:TIGR04364 128 AagyPQVTVVLADAEAGVPEL--APYDRIIVT---VGAWDIPPA--WLDQLAPGGRLV 178
|
|
| Methyltransf_25 |
pfam13649 |
Methyltransferase domain; This family appears to be a methyltransferase domain. |
521-607 |
6.94e-07 |
|
Methyltransferase domain; This family appears to be a methyltransferase domain.
Pssm-ID: 463945 [Multi-domain] Cd Length: 96 Bit Score: 47.94 E-value: 6.94e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 120608568 521 VLEPSAGTGRILEQLPE--GCEVVAVEINAALggrLD-ADRRAVVIG---DFLQCTPETL---WGSFDRIVMNPPF---A 588
Cdd:pfam13649 1 VLDLGCGTGRLTLALARrgGARVTGVDLSPEM---LErARERAAEAGlnvEFVQGDAEDLpfpDGSFDLVVSSGVLhhlP 77
|
90
....*....|....*....
gi 120608568 589 NADDIKHIRHALRFLKPGG 607
Cdd:pfam13649 78 DPDLEAALREIARVLKPGG 96
|
|
| MTS |
pfam05175 |
Methyltransferase small domain; This domain is found in ribosomal RNA small subunit ... |
504-609 |
1.34e-06 |
|
Methyltransferase small domain; This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases.
Pssm-ID: 428349 [Multi-domain] Cd Length: 170 Bit Score: 48.74 E-value: 1.34e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 120608568 504 DLAAR-MVELADIEPGMRVLEPSAGTGRI----LEQLPEGcEVVAVEINA---------ALGGRLDADRraVVIGDFLQC 569
Cdd:pfam05175 17 DIGSRlLLEHLPKDLSGKVLDLGCGAGVLgaalAKESPDA-ELTMVDINAralesarenLAANGLENGE--VVASDVYSG 93
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 120608568 570 TPEtlwGSFDRIVMNPPF----ANADDIKH--IRHALRFLKPGGKL 609
Cdd:pfam05175 94 VED---GKFDLIISNPPFhaglATTYNVAQrfIADAKRHLRPGGEL 136
|
|
| PRK14968 |
PRK14968 |
putative methyltransferase; Provisional |
502-587 |
7.59e-06 |
|
putative methyltransferase; Provisional
Pssm-ID: 237872 [Multi-domain] Cd Length: 188 Bit Score: 46.82 E-value: 7.59e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 120608568 502 PADLAARMVELADIEPGMRVLEPSAGTGRILEQLP-EGCEVVAVEIN------AALGGRLDADRRA---VVIGDFLQCTP 571
Cdd:PRK14968 8 PAEDSFLLAENAVDKKGDRVLEVGTGSGIVAIVAAkNGKKVVGVDINpyavecAKCNAKLNNIRNNgveVIRSDLFEPFR 87
|
90
....*....|....*.
gi 120608568 572 EtlwGSFDRIVMNPPF 587
Cdd:PRK14968 88 G---DKFDVILFNPPY 100
|
|
| PCMT |
pfam01135 |
Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); |
491-623 |
1.09e-05 |
|
Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT);
Pssm-ID: 395902 [Multi-domain] Cd Length: 205 Bit Score: 46.98 E-value: 1.09e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 120608568 491 QVVSAPQLFptpadlaARMVELADIEPGMRVLEPSAGTG---RILEQL-PEGCEVVAVEINAALG-------GRLDADRR 559
Cdd:pfam01135 54 QTISAPHMH-------AMMLELLELKPGMRVLEIGSGSGyltACFARMvGEVGRVVSIEHIPELVeiarrnlEKLGLENV 126
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 120608568 560 AVVIGDFLQCTPEtlWGSFDRIVMNppfANADDIKhiRHALRFLKPGGKLVAICANGPRQNAQL 623
Cdd:pfam01135 127 IVVVGDGRQGWPE--FAPYDAIHVG---AAAPEIP--EALIDQLKEGGRLVIPVGPNGNQVLQQ 183
|
|
| RsmA |
COG0030 |
16S rRNA A1518 and A1519 N6-dimethyltransferase RsmA/KsgA/DIM1 (may also have DNA glycosylase ... |
505-587 |
2.00e-05 |
|
16S rRNA A1518 and A1519 N6-dimethyltransferase RsmA/KsgA/DIM1 (may also have DNA glycosylase/AP lyase activity) [Translation, ribosomal structure and biogenesis]; 16S rRNA A1518 and A1519 N6-dimethyltransferase RsmA/KsgA/DIM1 (may also have DNA glycosylase/AP lyase activity) is part of the Pathway/BioSystem: 16S rRNA modification
Pssm-ID: 439801 [Multi-domain] Cd Length: 270 Bit Score: 46.66 E-value: 2.00e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 120608568 505 LAARMVELADIEPGMRVLEPSAGTG---RILeqLPEGCEVVAVEINAALGGRL-----DADRRAVVIGDFLQCTPETLW- 575
Cdd:COG0030 25 IIRRIVDAAGITPGDTVLEIGPGLGaltRAL--LERAARVTAVEIDRRLAAILretfaAYPNLTVIEGDALKVDLPALAa 102
|
90
....*....|..
gi 120608568 576 GSFDRIVMNPPF 587
Cdd:COG0030 103 GEPLKVVGNLPY 114
|
|
| Tam |
COG4106 |
Trans-aconitate methyltransferase [Energy production and conversion]; |
517-611 |
2.51e-05 |
|
Trans-aconitate methyltransferase [Energy production and conversion];
Pssm-ID: 443282 [Multi-domain] Cd Length: 100 Bit Score: 43.27 E-value: 2.51e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 120608568 517 PGMRVLEPSAGTGRILEQLPE---GCEVVAVEINAALggrLDADRRA-----VVIGDFLQCTPEtlwGSFDRIvmnppFA 588
Cdd:COG4106 1 PPRRVLDLGCGTGRLTALLAErfpGARVTGVDLSPEM---LARARARlpnvrFVVADLRDLDPP---EPFDLV-----VS 69
|
90 100
....*....|....*....|....*....
gi 120608568 589 NA------DDIKHIRHALRFLKPGGKLVA 611
Cdd:COG4106 70 NAalhwlpDHAALLARLAAALAPGGVLAV 98
|
|
| pcm |
PRK00312 |
protein-L-isoaspartate(D-aspartate) O-methyltransferase; |
491-611 |
2.87e-05 |
|
protein-L-isoaspartate(D-aspartate) O-methyltransferase;
Pssm-ID: 178974 [Multi-domain] Cd Length: 212 Bit Score: 45.58 E-value: 2.87e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 120608568 491 QVVSAPqlfptpaDLAARMVELADIEPGMRVLEPSAGTG---RILEQLPEgcEVVAVE-----INAALgGRLD-ADRRAV 561
Cdd:PRK00312 59 QTISQP-------YMVARMTELLELKPGDRVLEIGTGSGyqaAVLAHLVR--RVFSVEriktlQWEAK-RRLKqLGLHNV 128
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 120608568 562 VI--GDFLQCTPEtlWGSFDRIVMNppfANADDIKhiRHALRFLKPGGKLVA 611
Cdd:PRK00312 129 SVrhGDGWKGWPA--YAPFDRILVT---AAAPEIP--RALLEQLKEGGILVA 173
|
|
| Trm5 |
COG2520 |
tRNA G37 N-methylase Trm5 [Translation, ribosomal structure and biogenesis]; tRNA G37 ... |
507-609 |
3.07e-05 |
|
tRNA G37 N-methylase Trm5 [Translation, ribosomal structure and biogenesis]; tRNA G37 N-methylase Trm5 is part of the Pathway/BioSystem: tRNA modification
Pssm-ID: 442010 [Multi-domain] Cd Length: 333 Bit Score: 46.39 E-value: 3.07e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 120608568 507 ARMVELadIEPGMRVLEPSAGTGrileqlP--------EGCEVVAVEINAA-------------LGGRLDAdrravVIGD 565
Cdd:COG2520 172 LRIAEL--VKPGERVLDMFAGVG------PfsipiakrSGAKVVAIDINPDaveylkenirlnkVEDRVTP-----ILGD 238
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 120608568 566 FLQCTPETLwGSFDRIVMNPPFaNADDikHIRHALRFLKPGGKL 609
Cdd:COG2520 239 AREVAPELE-GKADRIIMNLPH-SADE--FLDAALRALKPGGVI 278
|
|
| Methyltransf_11 |
pfam08241 |
Methyltransferase domain; Members of this family are SAM dependent methyltransferases. |
522-610 |
3.61e-05 |
|
Methyltransferase domain; Members of this family are SAM dependent methyltransferases.
Pssm-ID: 462406 [Multi-domain] Cd Length: 94 Bit Score: 42.65 E-value: 3.61e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 120608568 522 LEPSAGTGRILEQLPE-GCEVVAVEINAALggrLDADRRAV--VIGDFLQCTPETLW---GSFDRIVMNPPFANADDI-K 594
Cdd:pfam08241 1 LDVGCGTGLLTELLARlGARVTGVDISPEM---LELAREKAprEGLTFVVGDAEDLPfpdNSFDLVLSSEVLHHVEDPeR 77
|
90
....*....|....*.
gi 120608568 595 HIRHALRFLKPGGKLV 610
Cdd:pfam08241 78 ALREIARVLKPGGILI 93
|
|
| HemK |
COG2890 |
Methylase of polypeptide chain release factors [Translation, ribosomal structure and ... |
505-633 |
5.15e-05 |
|
Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis];
Pssm-ID: 442135 [Multi-domain] Cd Length: 282 Bit Score: 45.53 E-value: 5.15e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 120608568 505 LAARMVELADIEPGMRVLEpsAGTGR------ILEQLPEgCEVVAVEI----------NAAlggRLDADRRAVVI-GDFL 567
Cdd:COG2890 100 LVELALALLPAGAPPRVLD--LGTGSgaialaLAKERPD-ARVTAVDIspdalavarrNAE---RLGLEDRVRFLqGDLF 173
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 120608568 568 QctPETLWGSFDRIVMNPP-----------------------FANAD---DIKHI-RHALRFLKPGGKLVaiCANGPRQN 620
Cdd:COG2890 174 E--PLPGDGRFDLIVSNPPyipedeiallppevrdheprlalDGGEDgldFYRRIiAQAPRLLKPGGWLL--LEIGEDQG 249
|
170
....*....|...
gi 120608568 621 AQLRPLVEQHGGE 633
Cdd:COG2890 250 EAVRALLEAAGFA 262
|
|
| Methyltransf_23 |
pfam13489 |
Methyltransferase domain; This family appears to be a methyltransferase domain. |
497-625 |
5.75e-05 |
|
Methyltransferase domain; This family appears to be a methyltransferase domain.
Pssm-ID: 404385 [Multi-domain] Cd Length: 162 Bit Score: 43.96 E-value: 5.75e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 120608568 497 QLFPTPADLAARMveLADIEPGMRVLEPSAGTGRILEQL-PEGCEVVAVEINAALGGRLdadRRAVVIGDFLQCTPETLW 575
Cdd:pfam13489 4 QRERLLADLLLRL--LPKLPSPGRVLDFGCGTGIFLRLLrAQGFSVTGVDPSPIAIERA---LLNVRFDQFDEQEAAVPA 78
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 120608568 576 GSFDRIVMNPPFANADD-IKHIRHALRFLKPGGKLVAICANGPRQNAQLRP 625
Cdd:pfam13489 79 GKFDVIVAREVLEHVPDpPALLRQIAALLKPGGLLLLSTPLASDEADRLLL 129
|
|
| RsmB |
COG0144 |
16S rRNA C967 or C1407 C5-methylase, RsmB/RsmF family [Translation, ribosomal structure and ... |
489-610 |
9.59e-05 |
|
16S rRNA C967 or C1407 C5-methylase, RsmB/RsmF family [Translation, ribosomal structure and biogenesis]; 16S rRNA C967 or C1407 C5-methylase, RsmB/RsmF family is part of the Pathway/BioSystem: 16S rRNA modification
Pssm-ID: 439914 [Multi-domain] Cd Length: 441 Bit Score: 45.38 E-value: 9.59e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 120608568 489 GVQVVSAPQLFPTPA---------DLAARMV-ELADIEPGMRVLEPSAG----TGRILEQLPEGCEVVAVEI-------- 546
Cdd:COG0144 211 GLRLEGPGPVTALPGfreglfsvqDEASQLVaLLLDPKPGERVLDLCAApggkTLHLAELMGNKGRVVAVDIsehrlkrl 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 120608568 547 --NAAlggRLDADRRAVVIGDFLQcTPETLWGSFDRI----------VM--NPpfanadDIKH----------------- 595
Cdd:COG0144 291 reNLA---RLGLSNVEVVVADARE-LLEWLPGKFDRVlldapcsgtgTLrrHP------DIKWrrtpediaelaalqrel 360
|
170
....*....|....*
gi 120608568 596 IRHALRFLKPGGKLV 610
Cdd:COG0144 361 LDAAARLLKPGGRLV 375
|
|
| hemK_rel_arch |
TIGR00537 |
HemK-related putative methylase; The gene hemK from E. coli was found to contribute to heme ... |
512-608 |
1.93e-04 |
|
HemK-related putative methylase; The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase. Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. [Unknown function, Enzymes of unknown specificity]
Pssm-ID: 129628 [Multi-domain] Cd Length: 179 Bit Score: 42.54 E-value: 1.93e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 120608568 512 LADIEPGmRVLEPSAGTGRILEQLPEGCE-VVAVEIN--AALGGRLDADRRAVVIGDFLQCTPETLWGSFDRIVMNPPFA 588
Cdd:TIGR00537 15 LRELKPD-DVLEIGAGTGLVAIRLKGKGKcILTTDINpfAVKELRENAKLNNVGLDVVMTDLFKGVRGKFDVILFNPPYL 93
|
90 100
....*....|....*....|
gi 120608568 589 NADDIKHIRHALRFLKPGGK 608
Cdd:TIGR00537 94 PLEDDLRRGDWLDVAIDGGK 113
|
|
| PRK14967 |
PRK14967 |
putative methyltransferase; Provisional |
493-592 |
2.12e-04 |
|
putative methyltransferase; Provisional
Pssm-ID: 184931 [Multi-domain] Cd Length: 223 Bit Score: 43.12 E-value: 2.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 120608568 493 VSAPQlfpTPADLAARMVELADIEPGMRVLEPSAGTGRI-LEQLPEGCE-VVAVEI----------NAALGGRldadRRA 560
Cdd:PRK14967 15 VYRPQ---EDTQLLADALAAEGLGPGRRVLDLCTGSGALaVAAAAAGAGsVTAVDIsrravrsarlNALLAGV----DVD 87
|
90 100 110
....*....|....*....|....*....|..
gi 120608568 561 VVIGDFLQCTPetlWGSFDRIVMNPPFANADD 592
Cdd:PRK14967 88 VRRGDWARAVE---FRPFDVVVSNPPYVPAPP 116
|
|
| Methyltransf_12 |
pfam08242 |
Methyltransferase domain; Members of this family are SAM dependent methyltransferases. |
522-609 |
2.62e-04 |
|
Methyltransferase domain; Members of this family are SAM dependent methyltransferases.
Pssm-ID: 400515 [Multi-domain] Cd Length: 98 Bit Score: 40.43 E-value: 2.62e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 120608568 522 LEPSAGTGR----ILEQLPeGCEVVAVEINAALGGRLDADRRAVVIGDFLQCT------PETLWGSFDRIVMNPPFANAD 591
Cdd:pfam08242 1 LEIGCGTGTllraLLEALP-GLEYTGLDISPAALEAARERLAALGLLNAVRVElfqldlGELDPGSFDVVVASNVLHHLA 79
|
90
....*....|....*....
gi 120608568 592 DIKH-IRHALRFLKPGGKL 609
Cdd:pfam08242 80 DPRAvLRNIRRLLKPGGVL 98
|
|
| COG4976 |
COG4976 |
Predicted methyltransferase, contains TPR repeat [General function prediction only]; |
501-610 |
4.02e-04 |
|
Predicted methyltransferase, contains TPR repeat [General function prediction only];
Pssm-ID: 444001 [Multi-domain] Cd Length: 181 Bit Score: 41.91 E-value: 4.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 120608568 501 TPADLAARMVELADIEPGMRVLEPSAGTGRILEQL-PEGCEVVAVEINAALGGRldADRRAV----VIGDFLQCTPETlw 575
Cdd:COG4976 30 APALLAEELLARLPPGPFGRVLDLGCGTGLLGEALrPRGYRLTGVDLSEEMLAK--AREKGVydrlLVADLADLAEPD-- 105
|
90 100 110
....*....|....*....|....*....|....*.
gi 120608568 576 GSFDRIVMNPPFANADDIK-HIRHALRFLKPGGKLV 610
Cdd:COG4976 106 GRFDLIVAADVLTYLGDLAaVFAGVARALKPGGLFI 141
|
|
| Methyltransf_31 |
pfam13847 |
Methyltransferase domain; This family appears to have methyltransferase activity. |
515-639 |
7.27e-04 |
|
Methyltransferase domain; This family appears to have methyltransferase activity.
Pssm-ID: 463998 [Multi-domain] Cd Length: 150 Bit Score: 40.48 E-value: 7.27e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 120608568 515 IEPGMRVLEPSAGTGRIL----EQLPEGCEVVAVEINAA-------LGGRLDADRRAVVIGDFLQCTPETLWGSFDRIVM 583
Cdd:pfam13847 1 IDKGMRVLDLGCGTGHLSfelaEELGPNAEVVGIDISEEaiekareNAQKLGFDNVEFEQGDIEELPELLEDDKFDVVIS 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 120608568 584 NPPFAN-ADDIKHIRHALRFLKPGGKLVAICANGP-------RQNAQLRPLVEQHGGEWENLPP 639
Cdd:pfam13847 81 NCVLNHiPDPDKVLQEILRVLKPGGRLIISDPDSLaelpahvKEDSTYYAGCVGGAILKKKLYE 144
|
|
| Ubie_methyltran |
pfam01209 |
ubiE/COQ5 methyltransferase family; |
517-612 |
2.95e-03 |
|
ubiE/COQ5 methyltransferase family;
Pssm-ID: 395966 [Multi-domain] Cd Length: 228 Bit Score: 39.73 E-value: 2.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 120608568 517 PGMRVLEPSAGTG----RILEQLPEGCEVVAVEINAAL--GGRLDADRRAVVIGDFLQCTPETLW---GSFDRIVMNPPF 587
Cdd:pfam01209 42 RGNKFLDVAGGTGdwtfGLSDSAGSSGKVVGLDINENMlkEGEKKAKEEGKYNIEFLQGNAEELPfedDSFDIVTISFGL 121
|
90 100
....*....|....*....|....*.
gi 120608568 588 ANADDI-KHIRHALRFLKPGGKLVAI 612
Cdd:pfam01209 122 RNFPDYlKVLKEAFRVLKPGGRVVCL 147
|
|
| PRK13942 |
PRK13942 |
protein-L-isoaspartate O-methyltransferase; Provisional |
491-611 |
3.03e-03 |
|
protein-L-isoaspartate O-methyltransferase; Provisional
Pssm-ID: 184409 Cd Length: 212 Bit Score: 39.61 E-value: 3.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 120608568 491 QVVSAPQLfptpadlAARMVELADIEPGMRVLEPSAGTGR----ILEQLPEGCEVVAVEINAALGGR-------LDADRR 559
Cdd:PRK13942 57 QTISAIHM-------VAIMCELLDLKEGMKVLEIGTGSGYhaavVAEIVGKSGKVVTIERIPELAEKakktlkkLGYDNV 129
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 120608568 560 AVVIGD----FLQCTPetlwgsFDRIVMNppfANADDIKHIrhALRFLKPGGKLVA 611
Cdd:PRK13942 130 EVIVGDgtlgYEENAP------YDRIYVT---AAGPDIPKP--LIEQLKDGGIMVI 174
|
|
| rsmC |
PRK09489 |
16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC; |
576-615 |
3.87e-03 |
|
16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC;
Pssm-ID: 181902 [Multi-domain] Cd Length: 342 Bit Score: 39.92 E-value: 3.87e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 120608568 576 GSFDRIVMNPPFanADDIKH--------IRHALRFLKPGGKLvAICAN 615
Cdd:PRK09489 260 GRFDMIISNPPF--HDGIQTsldaaqtlIRGAVRHLNSGGEL-RIVAN 304
|
|
| ubiE |
PRK00216 |
bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol ... |
508-610 |
6.84e-03 |
|
bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE;
Pssm-ID: 234689 [Multi-domain] Cd Length: 239 Bit Score: 38.60 E-value: 6.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 120608568 508 RMVELADIEPGMRVLEPSAGTG----RILEQLPEGCEVVAVEINA---ALGG-RLDADRRAVVIgDFLQCTPETLW---G 576
Cdd:PRK00216 42 KTIKWLGVRPGDKVLDLACGTGdlaiALAKAVGKTGEVVGLDFSEgmlAVGReKLRDLGLSGNV-EFVQGDAEALPfpdN 120
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 120608568 577 SFDRIVM-----NppfanaddIKHIRHAL----RFLKPGGKLV 610
Cdd:PRK00216 121 SFDAVTIafglrN--------VPDIDKALremyRVLKPGGRLV 155
|
|
| |
