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Conserved domains on  [gi|125996884|gb|ABN60959|]
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protein of unknown function DUF446 [Shewanella baltica OS155]

Protein Classification

YqcC family protein( domain architecture ID 10006929)

YqcC family protein is a DUF446 domain-containing protein; similar to Escherichia coli protein YqcC

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YqcC COG3098
Uncharacterized conserved protein YqcC, DUF446 family [Function unknown];
28-113 7.47e-33

Uncharacterized conserved protein YqcC, DUF446 family [Function unknown];


:

Pssm-ID: 442332  Cd Length: 109  Bit Score: 110.70  E-value: 7.47e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125996884  28 ELWSEQTPSAVAMASTAPFACDLMPLEQWLQFILLPRMQTLIETGAPLPTQIAIAPMAEHVW-QDMPQRQALIGVLNELD 106
Cdd:COG3098   22 GLWQSEPPSPEALASTQPFCVDTLSFEQWLQWVFIPRMRALLEAGQPLPTRFAIAPYAEEALkGRPPGVAPLLALLRQLD 101


                 ....*..
gi 125996884 107 MLLNESR 113
Cdd:COG3098  102 ALLSGES 108
 
Name Accession Description Interval E-value
YqcC COG3098
Uncharacterized conserved protein YqcC, DUF446 family [Function unknown];
28-113 7.47e-33

Uncharacterized conserved protein YqcC, DUF446 family [Function unknown];


Pssm-ID: 442332  Cd Length: 109  Bit Score: 110.70  E-value: 7.47e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125996884  28 ELWSEQTPSAVAMASTAPFACDLMPLEQWLQFILLPRMQTLIETGAPLPTQIAIAPMAEHVW-QDMPQRQALIGVLNELD 106
Cdd:COG3098   22 GLWQSEPPSPEALASTQPFCVDTLSFEQWLQWVFIPRMRALLEAGQPLPTRFAIAPYAEEALkGRPPGVAPLLALLRQLD 101


                 ....*..
gi 125996884 107 MLLNESR 113
Cdd:COG3098  102 ALLSGES 108
DUF446 pfam04287
tRNA pseudouridine synthase C; This family is suggested to be the catalytic domain of tRNA ...
 28-106 3.58e-31

tRNA pseudouridine synthase C; This family is suggested to be the catalytic domain of tRNA pseudouridine synthase C by association. The structure has been solved for one member, as PDB:2HGK, which by inference is designated in this way.


Pssm-ID: 427841  Cd Length: 97  Bit Score: 106.09  E-value: 3.58e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125996884   28 ELWSEQTPSAVAMASTAPFACDLMPLEQWLQFILLPRMQTLIETGAPLPTQIAIAPMAEHVWQDMP-QRQALIGVLNELD 106
Cdd:pfam04287  17 GLWQATPPSPEALASTQPFCVDTLSFEQWLQWIFIPRMRALIEAGQPLPANFAIAPMAEEALKGDAeQRAELLALLRALD 96
 
Name Accession Description Interval E-value
YqcC COG3098
Uncharacterized conserved protein YqcC, DUF446 family [Function unknown];
28-113 7.47e-33

Uncharacterized conserved protein YqcC, DUF446 family [Function unknown];


Pssm-ID: 442332  Cd Length: 109  Bit Score: 110.70  E-value: 7.47e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125996884  28 ELWSEQTPSAVAMASTAPFACDLMPLEQWLQFILLPRMQTLIETGAPLPTQIAIAPMAEHVW-QDMPQRQALIGVLNELD 106
Cdd:COG3098   22 GLWQSEPPSPEALASTQPFCVDTLSFEQWLQWVFIPRMRALLEAGQPLPTRFAIAPYAEEALkGRPPGVAPLLALLRQLD 101


                 ....*..
gi 125996884 107 MLLNESR 113
Cdd:COG3098  102 ALLSGES 108
DUF446 pfam04287
tRNA pseudouridine synthase C; This family is suggested to be the catalytic domain of tRNA ...
 28-106 3.58e-31

tRNA pseudouridine synthase C; This family is suggested to be the catalytic domain of tRNA pseudouridine synthase C by association. The structure has been solved for one member, as PDB:2HGK, which by inference is designated in this way.


Pssm-ID: 427841  Cd Length: 97  Bit Score: 106.09  E-value: 3.58e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125996884   28 ELWSEQTPSAVAMASTAPFACDLMPLEQWLQFILLPRMQTLIETGAPLPTQIAIAPMAEHVWQDMP-QRQALIGVLNELD 106
Cdd:pfam04287  17 GLWQATPPSPEALASTQPFCVDTLSFEQWLQWIFIPRMRALIEAGQPLPANFAIAPMAEEALKGDAeQRAELLALLRALD 96
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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