|
Name |
Accession |
Description |
Interval |
E-value |
| AtpD |
COG0055 |
FoF1-type ATP synthase, beta subunit [Energy production and conversion]; FoF1-type ATP ... |
1-251 |
0e+00 |
|
FoF1-type ATP synthase, beta subunit [Energy production and conversion]; FoF1-type ATP synthase, beta subunit is part of the Pathway/BioSystem: FoF1-type ATP synthase
Pssm-ID: 439825 [Multi-domain] Cd Length: 468 Bit Score: 543.53 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158262971 1 ALVVYKNDERKtkIVLEVALELGDGMVRTIAMESTDGLTRGMEVLDTGRPISVPVGKETLGRVFNVLGDTIDLEAPFtED 80
Cdd:COG0055 31 ALEVENEGGGE--LVLEVAQHLGDNTVRCIAMDSTDGLVRGMEVIDTGAPISVPVGEATLGRIFNVLGEPIDGKGPI-EA 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158262971 81 AERQPIHKKAPTFDELSTSSEILETGIKVIDLLAPYLKGGKVGLFGGAGVGKTVLIQELIHNIAQEHGGISVFAGVGERT 160
Cdd:COG0055 108 KERRPIHRPAPPFEEQSTKTEILETGIKVIDLLAPYAKGGKIGLFGGAGVGKTVLIMELIHNIAKEHGGVSVFAGVGERT 187
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158262971 161 REGNDLYWEMKESGVIEKTAMVFGQMNEPPGARMRVALTGLTIAEYFRDVEGQDVLLFIDNIFRFTQAGSEVSALLGRMP 240
Cdd:COG0055 188 REGNDLYREMKESGVLDKTALVFGQMNEPPGARLRVALTALTMAEYFRDEEGQDVLLFIDNIFRFTQAGSEVSALLGRMP 267
|
250
....*....|.
gi 158262971 241 SAVGYQPTLAT 251
Cdd:COG0055 268 SAVGYQPTLAT 278
|
|
| atpD |
TIGR01039 |
ATP synthase, F1 beta subunit; The sequences of ATP synthase F1 alpha and beta subunits are ... |
13-251 |
9.46e-168 |
|
ATP synthase, F1 beta subunit; The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit. [Energy metabolism, ATP-proton motive force interconversion]
Pssm-ID: 211621 [Multi-domain] Cd Length: 461 Bit Score: 471.13 E-value: 9.46e-168
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158262971 13 KIVLEVALELGDGMVRTIAMESTDGLTRGMEVLDTGRPISVPVGKETLGRVFNVLGDTIDLEAPFTEDaERQPIHKKAPT 92
Cdd:TIGR01039 38 ELTLEVAQHLGDDTVRTIAMGSTDGLVRGLEVIDTGAPISVPVGKETLGRIFNVLGEPIDEKGPIPAK-ERWPIHRKAPS 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158262971 93 FDELSTSSEILETGIKVIDLLAPYLKGGKVGLFGGAGVGKTVLIQELIHNIAQEHGGISVFAGVGERTREGNDLYWEMKE 172
Cdd:TIGR01039 117 FEEQSTKVEILETGIKVIDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGERTREGNDLYHEMKE 196
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 158262971 173 SGVIEKTAMVFGQMNEPPGARMRVALTGLTIAEYFRDVEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLAT 251
Cdd:TIGR01039 197 SGVIDKTALVYGQMNEPPGARMRVALTGLTMAEYFRDEQGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLAT 275
|
|
| atpB |
CHL00060 |
ATP synthase CF1 beta subunit |
1-251 |
2.65e-158 |
|
ATP synthase CF1 beta subunit
Pssm-ID: 214349 [Multi-domain] Cd Length: 494 Bit Score: 448.34 E-value: 2.65e-158
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158262971 1 ALVVYKNDE--RKTKIVLEVALELGDGMVRTIAMESTDGLTRGMEVLDTGRPISVPVGKETLGRVFNVLGDTIDLEAPFt 78
Cdd:CHL00060 42 ALVVKGRDTagQEINVTCEVQQLLGNNRVRAVAMSATDGLMRGMEVIDTGAPLSVPVGGATLGRIFNVLGEPVDNLGPV- 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158262971 79 EDAERQPIHKKAPTFDELSTSSEILETGIKVIDLLAPYLKGGKVGLFGGAGVGKTVLIQELIHNIAQEHGGISVFAGVGE 158
Cdd:CHL00060 121 DTRTTSPIHRSAPAFIQLDTKLSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGE 200
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158262971 159 RTREGNDLYWEMKESGVIE-------KTAMVFGQMNEPPGARMRVALTGLTIAEYFRDVEGQDVLLFIDNIFRFTQAGSE 231
Cdd:CHL00060 201 RTREGNDLYMEMKESGVINeqniaesKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNKQDVLLFIDNIFRFVQAGSE 280
|
250 260
....*....|....*....|
gi 158262971 232 VSALLGRMPSAVGYQPTLAT 251
Cdd:CHL00060 281 VSALLGRMPSAVGYQPTLST 300
|
|
| F1-ATPase_beta_CD |
cd01133 |
F1 ATP synthase beta subunit, central domain; The F-ATPase is found in bacterial plasma ... |
52-251 |
1.05e-148 |
|
F1 ATP synthase beta subunit, central domain; The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The mitochondrial extrinsic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic. Alpha and beta subunits form the globular catalytic moiety, a hexameric ring of alternating alpha and beta subunits. Gamma, delta and epsilon subunits form a stalk, connecting F1 to F0, the integral membrane proton-translocating domain.
Pssm-ID: 410877 [Multi-domain] Cd Length: 277 Bit Score: 415.85 E-value: 1.05e-148
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158262971 52 SVPVGKETLGRVFNVLGDTIDlEAPFTEDAERQPIHKKAPTFDELSTSSEILETGIKVIDLLAPYLKGGKVGLFGGAGVG 131
Cdd:cd01133 1 SVPVGEETLGRIFNVLGEPID-ERGPIKAKERWPIHREAPEFVELSTEQEILETGIKVVDLLAPYAKGGKIGLFGGAGVG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158262971 132 KTVLIQELIHNIAQEHGGISVFAGVGERTREGNDLYWEMKESGVI-----EKTAMVFGQMNEPPGARMRVALTGLTIAEY 206
Cdd:cd01133 80 KTVLIMELINNIAKAHGGYSVFAGVGERTREGNDLYHEMKESGVInldglSKVALVYGQMNEPPGARARVALTGLTMAEY 159
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 158262971 207 FRDVEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLAT 251
Cdd:cd01133 160 FRDEEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLAT 204
|
|
| alt_F1F0_F1_bet |
TIGR03305 |
alternate F1F0 ATPase, F1 subunit beta; A small number of taxonomically diverse prokaryotic ... |
10-251 |
1.34e-120 |
|
alternate F1F0 ATPase, F1 subunit beta; A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Pssm-ID: 132348 [Multi-domain] Cd Length: 449 Bit Score: 351.05 E-value: 1.34e-120
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158262971 10 RKTKIVLEVALELGDGMVRTIAMESTDGLTRGMEVLDTGRPISVPVGKETLGRVFNVLGDTIDLEAPFTeDAERQPIHKK 89
Cdd:TIGR03305 30 REGEVVVEVLSQLDAHHVRGIALTPTQGLARGMPVRDSGGPLKAPVGKPTLSRMFDVFGNTIDRREPPK-DVEWRSVHQA 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158262971 90 APTFDELSTSSEILETGIKVIDLLAPYLKGGKVGLFGGAGVGKTVLIQELIHNIAQEHGGISVFAGVGERTREGNDLYWE 169
Cdd:TIGR03305 109 PPTLTRRSSKSEVFETGIKAIDVLVPLERGGKAGLFGGAGVGKTVLLTEMIHNMVGQHQGVSIFCGIGERCREGEELYRE 188
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158262971 170 MKESGVIEKTAMVFGQMNEPPGARMRVALTGLTIAEYFRDVEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTL 249
Cdd:TIGR03305 189 MKEAGVLDNTVMVFGQMNEPPGARFRVGHTALTMAEYFRDDEKQDVLLLIDNIFRFIQAGSEVSGLLGQMPSRLGYQPTL 268
|
..
gi 158262971 250 AT 251
Cdd:TIGR03305 269 GT 270
|
|
| RecA-like_ion-translocating_ATPases |
cd19476 |
RecA-like domain of ion-translocating ATPases; RecA-like NTPases. This family includes the ... |
52-251 |
1.47e-89 |
|
RecA-like domain of ion-translocating ATPases; RecA-like NTPases. This family includes the NTP-binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410884 [Multi-domain] Cd Length: 270 Bit Score: 265.86 E-value: 1.47e-89
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158262971 52 SVPVGKETLGRVFNVLGDTIDLEAPFTEDaERQPIHKKAPTFDELSTSSEILETGIKVIDLLAPYLKGGKVGLFGGAGVG 131
Cdd:cd19476 1 SVPVGPELLGRILDGLGEPLDGLPPIKTK-QRRPIHLKAPNPIERLPPEEPLQTGIKVIDLLAPYGRGQKIGIFGGSGVG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158262971 132 KTVLIQELIHNIAQEHGGISVFAGVGERTREGNDLYWEMKESGVIEKTAMVFGQMNEPPGARMRVALTGLTIAEYFRDvE 211
Cdd:cd19476 80 KTVLAMQLARNQAKAHAGVVVFAGIGERGREVNDLYEEFTKSGAMERTVVVANTANDPPGARMRVPYTGLTIAEYFRD-N 158
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 158262971 212 GQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLAT 251
Cdd:cd19476 159 GQHVLLIIDDISRYAEALREMSALLGEPPGREGYPPYLFT 198
|
|
| ATP-synt_ab |
pfam00006 |
ATP synthase alpha/beta family, nucleotide-binding domain; This entry includes the ATP ... |
106-251 |
1.23e-66 |
|
ATP synthase alpha/beta family, nucleotide-binding domain; This entry includes the ATP synthase alpha and beta subunits, the ATP synthase associated with flagella and the termination factor Rho.
Pssm-ID: 425417 [Multi-domain] Cd Length: 212 Bit Score: 205.28 E-value: 1.23e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158262971 106 GIKVIDLLAPYLKGGKVGLFGGAGVGKTVLIQELIHNIAQehgGISVFAGVGERTREGNDLYWEMKESGVIEKTAMVFGQ 185
Cdd:pfam00006 1 GIRAIDGLLPIGRGQRIGIFGGSGVGKTVLAGMIARQASA---DVVVYALIGERGREVREFIEELLGSGALKRTVVVVAT 77
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 158262971 186 MNEPPGARMRVALTGLTIAEYFRDvEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLAT 251
Cdd:pfam00006 78 SDEPPLARYRAPYTALTIAEYFRD-QGKDVLLIMDSLTRFAEALREISLALGEPPGREGYPPSVFS 142
|
|
| FliI |
COG1157 |
Flagellar biosynthesis/type III secretory pathway ATPase FliI [Cell motility, Intracellular ... |
28-248 |
5.33e-40 |
|
Flagellar biosynthesis/type III secretory pathway ATPase FliI [Cell motility, Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440771 [Multi-domain] Cd Length: 433 Bit Score: 142.86 E-value: 5.33e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158262971 28 RTIAM--ESTDGLTRGMEVLDTGRPISVPVGKETLGRVFNVLGDTIDLEAPFtEDAERQPIHKKAPTFDELSTSSEILET 105
Cdd:COG1157 65 RVLLMplGDLEGISPGARVVPTGRPLSVPVGDGLLGRVLDGLGRPLDGKGPL-PGEERRPLDAPPPNPLERARITEPLDT 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158262971 106 GIKVIDLLAPYLKGGKVGLFGGAGVGKTVLIQELIHNIAQEhggISVFAGVGERTRE-----GNDLYWE-MKESGVIEKT 179
Cdd:COG1157 144 GVRAIDGLLTVGRGQRIGIFAGSGVGKSTLLGMIARNTEAD---VNVIALIGERGREvrefiEDDLGEEgLARSVVVVAT 220
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 158262971 180 AmvfgqmNEPPGARMRVALTGLTIAEYFRDvEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPT 248
Cdd:COG1157 221 S------DEPPLMRLRAAYTATAIAEYFRD-QGKNVLLLMDSLTRFAMAQREIGLAAGEPPATRGYPPS 282
|
|
| ATPase_flagellum-secretory_path_III |
cd01136 |
Flagellum-specific ATPase/type III secretory pathway virulence-related protein; ... |
52-248 |
4.88e-38 |
|
Flagellum-specific ATPase/type III secretory pathway virulence-related protein; Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton-driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Pssm-ID: 410880 [Multi-domain] Cd Length: 265 Bit Score: 133.84 E-value: 4.88e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158262971 52 SVPVGKETLGRVFNVLGDTIDLEAPFTEDaERQPIHKKAPTFDELSTSSEILETGIKVIDLLAPYLKGGKVGLFGGAGVG 131
Cdd:cd01136 1 SIPVGDGLLGRVIDALGEPLDGKGLPDEP-ERRPLIAAPPNPLKRAPIEQPLPTGVRAIDGLLTCGEGQRIGIFAGSGVG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158262971 132 KTVLIQELIHNIAQEhggISVFAGVGERTREGNDLYWEMKESGVIEKTAMVFGQMNEPPGARMRVALTGLTIAEYFRDvE 211
Cdd:cd01136 80 KSTLLGMIARNTDAD---VNVIALIGERGREVREFIEKDLGEEGLKRSVLVVATSDESPLLRVRAAYTATAIAEYFRD-Q 155
|
170 180 190
....*....|....*....|....*....|....*..
gi 158262971 212 GQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPT 248
Cdd:cd01136 156 GKKVLLLMDSLTRFAMAQREVGLAAGEPPTRRGYPPS 192
|
|
| PRK08149 |
PRK08149 |
FliI/YscN family ATPase; |
34-245 |
8.57e-33 |
|
FliI/YscN family ATPase;
Pssm-ID: 236166 [Multi-domain] Cd Length: 428 Bit Score: 123.57 E-value: 8.57e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158262971 34 STDGLTRGMEVLDTGRPISVPVGKETLGRVFNVLG---DTIDLEAPFTEDAERQPIHKKAPTFDELSTSSEILETGIKVI 110
Cdd:PRK08149 63 NAQGLSRQVVLKPTGKPLSVWVGEALLGAVLDPTGkivERFDAPPTVGPISEERVIDVAPPSYAERRPIREPLITGVRAI 142
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158262971 111 DLLAPYLKGGKVGLFGGAGVGKTVLIQELIHNIAQEhggISVFAGVGERTREGNDLYWEMKESGVIEKTAMVFGQMNEPP 190
Cdd:PRK08149 143 DGLLTCGVGQRMGIFASAGCGKTSLMNMLIEHSEAD---VFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSS 219
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 158262971 191 GARMRVALTGLTIAEYFRDvEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGY 245
Cdd:PRK08149 220 VDRCNAALVATTVAEYFRD-QGKRVVLFIDSMTRYARALRDVALAAGELPARRGY 273
|
|
| fliI |
PRK08927 |
flagellar protein export ATPase FliI; |
28-248 |
2.14e-30 |
|
flagellar protein export ATPase FliI;
Pssm-ID: 236351 [Multi-domain] Cd Length: 442 Bit Score: 117.00 E-value: 2.14e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158262971 28 RTIAM--ESTDGLTRGMEVLDTGRPISVPVGKETLGRVFNVLGDTIDLEAPFTEDAERQPIHKKAPTFDELSTSSEILET 105
Cdd:PRK08927 65 RALLMpfGPLEGVRRGCRAVIANAAAAVRPSRAWLGRVVNALGEPIDGKGPLPQGPVPYPLRAPPPPAHSRARVGEPLDL 144
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158262971 106 GIKVIDLLAPYLKGGKVGLFGGAGVGKTVLIQELIHNIAQEhggISVFAGVGERTRE-----GNDLYWE-MKESGVIEKT 179
Cdd:PRK08927 145 GVRALNTFLTCCRGQRMGIFAGSGVGKSVLLSMLARNADAD---VSVIGLIGERGREvqeflQDDLGPEgLARSVVVVAT 221
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 158262971 180 AmvfgqmNEPPGARMRVALTGLTIAEYFRDvEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPT 248
Cdd:PRK08927 222 S------DEPALMRRQAAYLTLAIAEYFRD-QGKDVLCLMDSVTRFAMAQREIGLSAGEPPTTKGYTPT 283
|
|
| PRK06820 |
PRK06820 |
EscN/YscN/HrcN family type III secretion system ATPase; |
33-249 |
2.98e-30 |
|
EscN/YscN/HrcN family type III secretion system ATPase;
Pssm-ID: 180712 [Multi-domain] Cd Length: 440 Bit Score: 116.84 E-value: 2.98e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158262971 33 ESTDGLTRGMEVLDTGRPISVPVGKETLGRVFNVLGDTIDLEAPftEDAERQPIHKKAPTFDELSTSSEILETGIKVIDL 112
Cdd:PRK06820 79 ASSDGLRCGQWVTPLGHMHQVQVGADLAGRILDGLGAPIDGGPP--LTGQWRELDCPPPSPLTRQPIEQMLTTGIRAIDG 156
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158262971 113 LAPYLKGGKVGLFGGAGVGKTVLIQELIHNIAQEhggISVFAGVGERTREGNDLYWEMKESGVIEKTAMVFGQMNEPPGA 192
Cdd:PRK06820 157 ILSCGEGQRIGIFAAAGVGKSTLLGMLCADSAAD---VMVLALIGERGREVREFLEQVLTPEARARTVVVVATSDRPALE 233
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 158262971 193 RMRVALTGLTIAEYFRDvEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTL 249
Cdd:PRK06820 234 RLKGLSTATTIAEYFRD-RGKKVLLMADSLTRYARAAREIGLAAGEPPAAGSFPPSV 289
|
|
| PRK13343 |
PRK13343 |
F0F1 ATP synthase subunit alpha; Provisional |
18-240 |
1.11e-29 |
|
F0F1 ATP synthase subunit alpha; Provisional
Pssm-ID: 183987 [Multi-domain] Cd Length: 502 Bit Score: 115.78 E-value: 1.11e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158262971 18 VALELGDGMVRTIAMESTDGLTRGMEVLDTGRPISVPVGKETLGRVFNVLGDTIDLEAPfTEDAERQPIHKKAPTFDELS 97
Cdd:PRK13343 62 FAFNLEEELVGAVLLDDTADILAGTEVRRTGRVLEVPVGDGLLGRVIDPLGRPLDGGGP-LQATARRPLERPAPAIIERD 140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158262971 98 TSSEILETGIKVIDLLAPYLKGGKVGLFGGAGVGKTVLIQELIhnIAQEHGG-ISVFAGVGERTREGNDLYWEMKESGVI 176
Cdd:PRK13343 141 FVTEPLQTGIKVVDALIPIGRGQRELIIGDRQTGKTAIAIDAI--INQKDSDvICVYVAIGQKASAVARVIETLREHGAL 218
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 158262971 177 EKTAMVFGQMNEPPGARMRVALTGLTIAEYFRDvEGQDVLLFIDNIFRFTQAGSEVSALLGRMP 240
Cdd:PRK13343 219 EYTTVVVAEASDPPGLQYLAPFAGCAIAEYFRD-QGQDALIVYDDLSKHAAAYRELSLLLRRPP 281
|
|
| fliI |
PRK06002 |
flagellar protein export ATPase FliI; |
61-251 |
2.23e-28 |
|
flagellar protein export ATPase FliI;
Pssm-ID: 235666 [Multi-domain] Cd Length: 450 Bit Score: 111.63 E-value: 2.23e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158262971 61 GRVFNVLGDTIDLEAPFTEDAERQPIHKKAPTFDELSTSSEILETGIKVIDLLAPYLKGGKVGLFGGAGVGKTVLIQELi 140
Cdd:PRK06002 107 GRVINALGEPIDGLGPLAPGTRPMSIDATAPPAMTRARVETGLRTGVRVIDIFTPLCAGQRIGIFAGSGVGKSTLLAML- 185
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158262971 141 hniAQEHGGISV-FAGVGERTREGNdlywEMKE---SGVIEKTAMVFGQMNEPPGARMRVALTGLTIAEYFRDvEGQDVL 216
Cdd:PRK06002 186 ---ARADAFDTVvIALVGERGREVR----EFLEdtlADNLKKAVAVVATSDESPMMRRLAPLTATAIAEYFRD-RGENVL 257
|
170 180 190
....*....|....*....|....*....|....*
gi 158262971 217 LFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLAT 251
Cdd:PRK06002 258 LIVDSVTRFAHAAREVALAAGEPPVARGYPPSVFS 292
|
|
| PRK06936 |
PRK06936 |
EscN/YscN/HrcN family type III secretion system ATPase; |
37-249 |
6.67e-28 |
|
EscN/YscN/HrcN family type III secretion system ATPase;
Pssm-ID: 180762 [Multi-domain] Cd Length: 439 Bit Score: 110.23 E-value: 6.67e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158262971 37 GLTRGMEVLDTGRPISVPVGKETLGRVFNVLGDTIDlEAPFTEDAERQPIHKKAPTFDELSTSSEILETGIKVIDLLAPY 116
Cdd:PRK06936 81 GISSNTEVSPTGTMHQVGVGEHLLGRVLDGLGQPFD-GGHPPEPAAWYPVYADAPAPMSRRLIETPLSLGVRVIDGLLTC 159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158262971 117 LKGGKVGLFGGAGVGKTVLIQELIHNIAQEhggISVFAGVGERTREGND-LYWEMKESGvIEKTAMVFGQMNEPPGARMR 195
Cdd:PRK06936 160 GEGQRMGIFAAAGGGKSTLLASLIRSAEVD---VTVLALIGERGREVREfIESDLGEEG-LRKAVLVVATSDRPSMERAK 235
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 158262971 196 VALTGLTIAEYFRDvEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTL 249
Cdd:PRK06936 236 AGFVATSIAEYFRD-QGKRVLLLMDSVTRFARAQREIGLAAGEPPTRRGYPPSV 288
|
|
| fliI |
PRK07721 |
flagellar protein export ATPase FliI; |
47-248 |
2.04e-27 |
|
flagellar protein export ATPase FliI;
Pssm-ID: 181092 [Multi-domain] Cd Length: 438 Bit Score: 109.04 E-value: 2.04e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158262971 47 TGRPISVPVGKETLGRVFNVLGDTIDLE------APFTEDA------ERQPIhkkaptfdelstsSEILETGIKVIDLLA 114
Cdd:PRK07721 87 TGKPLEVKVGSGLIGQVLDALGEPLDGSalpkglAPVSTDQdppnplKRPPI-------------REPMEVGVRAIDSLL 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158262971 115 PYLKGGKVGLFGGAGVGKTVLIQELIHNIAQEhggISVFAGVGERTREGND-LYWEMKESGvIEKTAMVFGQMNEPPGAR 193
Cdd:PRK07721 154 TVGKGQRVGIFAGSGVGKSTLMGMIARNTSAD---LNVIALIGERGREVREfIERDLGPEG-LKRSIVVVATSDQPALMR 229
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 158262971 194 MRVALTGLTIAEYFRDvEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPT 248
Cdd:PRK07721 230 IKGAYTATAIAEYFRD-QGLNVMLMMDSVTRVAMAQREIGLAVGEPPTTKGYTPS 283
|
|
| fliI |
PRK08472 |
flagellar protein export ATPase FliI; |
13-251 |
8.38e-27 |
|
flagellar protein export ATPase FliI;
Pssm-ID: 181439 [Multi-domain] Cd Length: 434 Bit Score: 107.08 E-value: 8.38e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158262971 13 KIVLEVALELGDGMVRTIAMES--------TDGLTRGMEVLDTGRPISVPVGKETLGRVFNVLGDTIDLEAPFtEDAERQ 84
Cdd:PRK08472 44 KIESSDNGKECLGMVVVIEKEQfgispfsfIEGFKIGDKVFISKEGLNIPVGRNLLGRVVDPLGRPIDGKGAI-DYERYA 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158262971 85 PIHKKAPTFDELSTSSEILETGIKVIDLLAPYLKGGKVGLFGGAGVGKTVLIQELIHN-IAQehggISVFAGVGERTRE- 162
Cdd:PRK08472 123 PIMKAPIAAMKRGLIDEVFSVGVKSIDGLLTCGKGQKLGIFAGSGVGKSTLMGMIVKGcLAP----IKVVALIGERGREi 198
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158262971 163 --------GNDLywemkesgviEKTAMVFGQMNEPPGARMRVALTGLTIAEYFRDvEGQDVLLFIDNIFRFTQAGSEVSA 234
Cdd:PRK08472 199 pefieknlGGDL----------ENTVIVVATSDDSPLMRKYGAFCAMSVAEYFKN-QGLDVLFIMDSVTRFAMAQREIGL 267
|
250
....*....|....*..
gi 158262971 235 LLGRMPSAVGYQPTLAT 251
Cdd:PRK08472 268 ALGEPPTSKGYPPSVLS 284
|
|
| fliI |
PRK06793 |
flagellar protein export ATPase FliI; |
13-240 |
1.71e-26 |
|
flagellar protein export ATPase FliI;
Pssm-ID: 180696 [Multi-domain] Cd Length: 432 Bit Score: 106.22 E-value: 1.71e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158262971 13 KIVLEV-ALELGDGMVrtIAMESTDGLTRGMEVLDTGRPISVPVGKETLGRVFNVLGDTIDLEApftEDAERQPIHKKAP 91
Cdd:PRK06793 52 NVLCEViAIEKENNML--LPFEQTEKVCYGDSVTLIAEDVVIPRGNHLLGKVLSANGEVLNEEA---ENIPLQKIKLDAP 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158262971 92 TFDELSTS--SEILETGIKVIDLLAPYLKGGKVGLFGGAGVGKTVLIQELIHNIAQEhggISVFAGVGERTREGND-LYW 168
Cdd:PRK06793 127 PIHAFEREeiTDVFETGIKSIDSMLTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKAD---INVISLVGERGREVKDfIRK 203
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 158262971 169 EMKESGvIEKTAMVFGQMNEPPGARMRVALTGLTIAEYFRDvEGQDVLLFIDNIFRFTQAGSEVSALLGRMP 240
Cdd:PRK06793 204 ELGEEG-MRKSVVVVATSDESHLMQLRAAKLATSIAEYFRD-QGNNVLLMMDSVTRFADARRSVDIAVKELP 273
|
|
| PRK09099 |
PRK09099 |
type III secretion system ATPase; Provisional |
25-249 |
2.41e-26 |
|
type III secretion system ATPase; Provisional
Pssm-ID: 169656 [Multi-domain] Cd Length: 441 Bit Score: 106.01 E-value: 2.41e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158262971 25 GMVRTIAMES----TDGLTRGMEVLDTGRPISVPVGKETLGRVFNVLGDTIDLEAPFTEDaERQPIHKKAPTFDELSTSS 100
Cdd:PRK09099 66 GFSRDVALLSpfgeLGGLSRGTRVIGLGRPLSVPVGPALLGRVIDGLGEPIDGGGPLDCD-ELVPVIAAPPDPMSRRMVE 144
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158262971 101 EILETGIKVIDLLAPYLKGGKVGLFGGAGVGKTVLIQELIHNIAQEhggISVFAGVGERTREGNDLYWEMKESGVIEKTA 180
Cdd:PRK09099 145 APLPTGVRIVDGLMTLGEGQRMGIFAPAGVGKSTLMGMFARGTQCD---VNVIALIGERGREVREFIELILGEDGMARSV 221
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 158262971 181 MVFGQMNEPPGARMRVALTGLTIAEYFRDvEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTL 249
Cdd:PRK09099 222 VVCATSDRSSIERAKAAYVATAIAEYFRD-RGLRVLLMMDSLTRFARAQREIGLAAGEPPARRGFPPSV 289
|
|
| fliI |
PRK08972 |
flagellar protein export ATPase FliI; |
33-248 |
5.69e-25 |
|
flagellar protein export ATPase FliI;
Pssm-ID: 181599 [Multi-domain] Cd Length: 444 Bit Score: 102.09 E-value: 5.69e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158262971 33 ESTDGLTRGMEVLDTGRPISVPVGKETLGRVFNVLGDTIDLEAPFTEDaerQPIHKKAPTFDELSTS--SEILETGIKVI 110
Cdd:PRK08972 77 EELRGVLPGARVTPLGEQSGLPVGMSLLGRVIDGVGNPLDGLGPIYTD---QRASRHSPPINPLSRRpiTEPLDVGVRAI 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158262971 111 DLLAPYLKGGKVGLFGGAGVGKTVLIQELIHNIAQEhggISVFAGVGERTREGNDLYWE-MKESGViEKTAMVFGQMNEP 189
Cdd:PRK08972 154 NAMLTVGKGQRMGLFAGSGVGKSVLLGMMTRGTTAD---VIVVGLVGERGREVKEFIEEiLGEEGR-ARSVVVAAPADTS 229
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 158262971 190 PGARMRVALTGLTIAEYFRDvEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPT 248
Cdd:PRK08972 230 PLMRLKGCETATTIAEYFRD-QGLNVLLLMDSLTRYAQAQREIALAVGEPPATKGYPPS 287
|
|
| V_A-ATPase_A |
cd01134 |
V/A-type ATP synthase catalytic subunit A; V/A-type ATP synthase catalytic subunit A. These ... |
50-251 |
6.57e-24 |
|
V/A-type ATP synthase catalytic subunit A; V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. Vacuolar (V-type) ATPases play major roles in endomembrane and plasma membrane proton transport in eukaryotes. They are found in multiple intracellular membranes including vacuoles, endosomes, lysosomes, Golgi-derived vesicles, secretory vesicles, as well as the plasma membrane. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Pssm-ID: 410878 [Multi-domain] Cd Length: 288 Bit Score: 96.87 E-value: 6.57e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158262971 50 PISVPVGKETLGRVF----NVLGDTIDLEAPFTE---DAERQPIHKKAPTFDELsTSSEILETGIKVIDLLAPYLKGGKV 122
Cdd:cd01134 1 PLSVELGPGLLGSIFdgiqRPLEVIAETGSIFIPrgvNVQRWPVRQPRPVKEKL-PPNVPLLTGQRVLDTLFPVAKGGTA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158262971 123 GLFGGAGVGKTVLIQELIHNIAQEhggISVFAGVGERtreGND----------LYWEMKESGVIEKTAMVFGQMNEPPGA 192
Cdd:cd01134 80 AIPGPFGCGKTVISQSLSKWSNSD---VVIYVGCGER---GNEmaevleefpeLKDPITGESLMERTVLIANTSNMPVAA 153
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 158262971 193 RMRVALTGLTIAEYFRDVeGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLAT 251
Cdd:cd01134 154 REASIYTGITIAEYFRDM-GYNVSLMADSTSRWAEALREISGRLEEMPAEEGYPAYLGA 211
|
|
| PRK05922 |
PRK05922 |
type III secretion system ATPase; Validated |
38-245 |
8.97e-24 |
|
type III secretion system ATPase; Validated
Pssm-ID: 102061 [Multi-domain] Cd Length: 434 Bit Score: 98.82 E-value: 8.97e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158262971 38 LTRGMEVLDTGRPISVPVGKETLGRVFNVLGDTIDLEAPFTEdAERQPIHKKAPTFDELSTSSEILETGIKVIDLLAPYL 117
Cdd:PRK05922 77 VALGAEVLPLRRPPSLHLSDHLLGRVLDGFGNPLDGKEQLPK-THLKPLFSSPPSPMSRQPIQEIFPTGIKAIDAFLTLG 155
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158262971 118 KGGKVGLFGGAGVGKTVLIQELIHNIAQEhggISVFAGVGERTREGNDlYWEMKESGVIE-KTAMVFGQMNEPPGARMRV 196
Cdd:PRK05922 156 KGQRIGVFSEPGSGKSSLLSTIAKGSKST---INVIALIGERGREVRE-YIEQHKEGLAAqRTIIIASPAHETAPTKVIA 231
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 158262971 197 ALTGLTIAEYFRDvEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGY 245
Cdd:PRK05922 232 GRAAMTIAEYFRD-QGHRVLFIMDSLSRWIAALQEVALARGETLSAHHY 279
|
|
| fliI |
PRK05688 |
flagellar protein export ATPase FliI; |
34-249 |
2.04e-22 |
|
flagellar protein export ATPase FliI;
Pssm-ID: 168181 [Multi-domain] Cd Length: 451 Bit Score: 95.18 E-value: 2.04e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158262971 34 STDGLTRGMEVL---DTGRpisVPVGKETLGRVFNVLGDTIDLEAPFTEDAErqpIHKKAPTFDELSTS--SEILETGIK 108
Cdd:PRK05688 84 SVAGIAPGARVVplaDTGR---LPMGMSMLGRVLDGAGRALDGKGPMKAEDW---VPMDGPTINPLNRHpiSEPLDVGIR 157
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158262971 109 VIDLLAPYLKGGKVGLFGGAGVGKTVLIQELIHNIAQEhggISVFAGVGERTREGNDLYWEMKESGVIEKTAMVFGQMNE 188
Cdd:PRK05688 158 SINGLLTVGRGQRLGLFAGTGVGKSVLLGMMTRFTEAD---IIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADD 234
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 158262971 189 PPGARMRVALTGLTIAEYFRDvEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTL 249
Cdd:PRK05688 235 APLMRLRAAMYCTRIAEYFRD-KGKNVLLLMDSLTRFAQAQREIALAIGEPPATKGYPPSV 294
|
|
| F1-ATPase_alpha_CD |
cd01132 |
F1 ATP synthase alpha subunit, central domain; The F-ATPase is found in bacterial plasma ... |
51-240 |
5.02e-22 |
|
F1 ATP synthase alpha subunit, central domain; The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The mitochondrial extrinsic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic. Alpha and beta subunits form the globular catalytic moiety, a hexameric ring of alternating alpha and beta subunits. Gamma, delta and epsilon subunits form a stalk, connecting F1 to F0, the integral membrane proton-translocating domain.
Pssm-ID: 410876 [Multi-domain] Cd Length: 274 Bit Score: 91.85 E-value: 5.02e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158262971 51 ISVPVGKETLGRVFNVLGDTIDLEAPFTEDaERQPIHKKAPTFDELSTSSEILETGIKVIDLLAPYLKGGKVGLFGGAGV 130
Cdd:cd01132 2 VEVPVGEALLGRVVDALGNPIDGKGPIQTK-ERRRVESKAPGIIPRQSVNEPLQTGIKAIDSLIPIGRGQRELIIGDRQT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158262971 131 GKTVLIQELIHNiAQEHGGISVFAGVGERTREGNDLYWEMKESGVIEKTAMVFGQMNEPPGARMRVALTGLTIAEYFRDv 210
Cdd:cd01132 81 GKTAIAIDTIIN-QKGKKVYCIYVAIGQKRSTVAQIVKTLEEHGAMEYTIVVAATASDPAPLQYLAPYAGCAMGEYFRD- 158
|
170 180 190
....*....|....*....|....*....|
gi 158262971 211 EGQDVLLFIDNIFRFTQAGSEVSALLGRMP 240
Cdd:cd01132 159 NGKHALIIYDDLSKQAVAYRQMSLLLRRPP 188
|
|
| fliI |
PRK07196 |
flagellar protein export ATPase FliI; |
37-248 |
1.09e-21 |
|
flagellar protein export ATPase FliI;
Pssm-ID: 180875 [Multi-domain] Cd Length: 434 Bit Score: 93.03 E-value: 1.09e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158262971 37 GLTRGMEVLDTGRPISVPVGKETLGRVFNVLGDTIDLEAPFTEDAerqPIHKKAPTFDELSTSS--EILETGIKVIDLLA 114
Cdd:PRK07196 74 GVLGGARVFPSEQDGELLIGDSWLGRVINGLGEPLDGKGQLGGST---PLQQQLPQIHPLQRRAvdTPLDVGVNAINGLL 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158262971 115 PYLKGGKVGLFGGAGVGKTVLIQELIHNIAQEhggISVFAGVGERTREGNDLYWEMKESGVIEKTAMVFGQMNEPPGARM 194
Cdd:PRK07196 151 TIGKGQRVGLMAGSGVGKSVLLGMITRYTQAD---VVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADESPLMRI 227
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 158262971 195 RVALTGLTIAEYFRDvEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPT 248
Cdd:PRK07196 228 KATELCHAIATYYRD-KGHDVLLLVDSLTRYAMAQREIALSLGEPPATKGYPPS 280
|
|
| PRK07594 |
PRK07594 |
EscN/YscN/HrcN family type III secretion system ATPase; |
34-247 |
1.43e-21 |
|
EscN/YscN/HrcN family type III secretion system ATPase;
Pssm-ID: 136438 [Multi-domain] Cd Length: 433 Bit Score: 92.71 E-value: 1.43e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158262971 34 STDGLTRGMEVLDTGRPISVPVGKETLGRVFNVLGDTID-----------LEAPFTEDAERQPIhkkaptfdelstsSEI 102
Cdd:PRK07594 72 STIGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDgrelpdvcwkdYDAMPPPAMVRQPI-------------TQP 138
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158262971 103 LETGIKVIDLLAPYLKGGKVGLFGGAGVGKTVLIQELihnIAQEHGGISVFAGVGERTREGNDLYWEMKESGVIEKTAMV 182
Cdd:PRK07594 139 LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAML---CNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIV 215
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 158262971 183 FGQMNEPPGARMRVALTGLTIAEYFRDvEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQP 247
Cdd:PRK07594 216 VATSDRPALERVRALFVATTIAEFFRD-NGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPP 279
|
|
| V_A-ATPase_B |
cd01135 |
V/A-type ATP synthase subunit B; V/A-type ATP synthase (non-catalytic) subunit B. These ... |
50-251 |
1.42e-20 |
|
V/A-type ATP synthase subunit B; V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. Vacuolar (V-type) ATPases play major roles in endomembrane and plasma membrane proton transport in eukaryotes. They are found in multiple intracellular membranes including vacuoles, endosomes, lysosomes, Golgi-derived vesicles, secretory vesicles, as well as the plasma membrane. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Pssm-ID: 410879 [Multi-domain] Cd Length: 282 Bit Score: 88.05 E-value: 1.42e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158262971 50 PISVPVGKETLGRVFNVLGDTIDLEAPFTEDAER----QPIHKKAPTFDElstssEILETGIKVIDLLAPYLKGGKVGLF 125
Cdd:cd01135 1 VLKLPVSEDMLGRIFNGSGKPIDGGPPILPEDYLdingPPINPVARIYPE-----EMIQTGISAIDVMNTLVRGQKLPIF 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158262971 126 GGAGvgktvliqeLIHN-----IA-------QEHGGISVFAGVGERTREGNDLYWEMKESGVIEKTAMVFGQMNEPPGAR 193
Cdd:cd01135 76 SGSG---------LPHNelaaqIArqagvvgSEENFAIVFAAMGVTMEEARFFKDDFEETGALERVVLFLNLANDPTIER 146
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 158262971 194 MRVALTGLTIAEYFRDVEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLAT 251
Cdd:cd01135 147 IITPRMALTTAEYLAYEKGKHVLVILTDMTNYAEALREVSAAREEVPGRRGYPGYMYT 204
|
|
| fliI |
PRK07960 |
flagellum-specific ATP synthase FliI; |
32-249 |
4.50e-19 |
|
flagellum-specific ATP synthase FliI;
Pssm-ID: 181182 [Multi-domain] Cd Length: 455 Bit Score: 85.61 E-value: 4.50e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158262971 32 MESTDGLTRGMEVLdtGRPIS---------VPVGKETLGRVFNVLGDTID-LEAPftEDAERQPIHkkAPTFDELSTS-- 99
Cdd:PRK07960 82 LEEVEGILPGARVY--ARNISgeglqsgkqLPLGPALLGRVLDGSGKPLDgLPAP--DTGETGALI--TPPFNPLQRTpi 155
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158262971 100 SEILETGIKVIDLLAPYLKGGKVGLFGGAGVGKTVLIQELIHNIAQEhggISVFAGVGERTREGNDLYWEMKESGVIEKT 179
Cdd:PRK07960 156 EHVLDTGVRAINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTQAD---VIVVGLIGERGREVKDFIENILGAEGRARS 232
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158262971 180 AMVFGQMNEPPGARMRVALTGLTIAEYFRDvEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTL 249
Cdd:PRK07960 233 VVIAAPADVSPLLRMQGAAYATRIAEDFRD-RGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSV 301
|
|
| PRK04196 |
PRK04196 |
V-type ATP synthase subunit B; Provisional |
3-245 |
5.22e-19 |
|
V-type ATP synthase subunit B; Provisional
Pssm-ID: 235251 [Multi-domain] Cd Length: 460 Bit Score: 85.26 E-value: 5.22e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158262971 3 VVYKNDERKTKIVLEValelGDGMVRTIAMESTDGL-TRGMEVLDTGRPISVPVGKETLGRVFNVLGDTID-LEAPFTED 80
Cdd:PRK04196 31 IELPNGEKRRGQVLEV----SEDKAVVQVFEGTTGLdLKDTKVRFTGEPLKLPVSEDMLGRIFDGLGRPIDgGPEIIPEK 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158262971 81 aeRQPIHKKA--PTFDElsTSSEILETGIKVIDLLAPYLKGGKVGLFGGAGvgktvliqeLIHN-----IAQ-------E 146
Cdd:PRK04196 107 --RLDINGAPinPVARE--YPEEFIQTGISAIDGLNTLVRGQKLPIFSGSG---------LPHNelaaqIARqakvlgeE 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158262971 147 HGGISVFAGVGERTREGNDLYWEMKESGVIEKTAMVFGQMNEPPGARMRVALTGLTIAEYFRDVEGQDVLLFIDNIFRFT 226
Cdd:PRK04196 174 ENFAVVFAAMGITFEEANFFMEDFEETGALERSVVFLNLADDPAIERILTPRMALTAAEYLAFEKGMHVLVILTDMTNYC 253
|
250
....*....|....*....
gi 158262971 227 QAGSEVSALLGRMPSAVGY 245
Cdd:PRK04196 254 EALREISAAREEVPGRRGY 272
|
|
| AtpA |
COG0056 |
FoF1-type ATP synthase, alpha subunit [Energy production and conversion]; FoF1-type ATP ... |
15-240 |
3.26e-18 |
|
FoF1-type ATP synthase, alpha subunit [Energy production and conversion]; FoF1-type ATP synthase, alpha subunit is part of the Pathway/BioSystem: FoF1-type ATP synthase
Pssm-ID: 439826 [Multi-domain] Cd Length: 504 Bit Score: 83.16 E-value: 3.26e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158262971 15 VLEVALELGDGMVRTIAMESTDGLTRGMEVLDTGRPISVPVGKETLGRVFNVLGDTIDLEAPFTEDaERQPIHKKAPTFD 94
Cdd:COG0056 59 VYGMALNLEEDNVGVVLLGDYEGIKEGDTVKRTGRILSVPVGEALLGRVVDPLGRPIDGKGPIEAE-ERRPVERPAPGVI 137
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158262971 95 ELSTSSEILETGIKVIDLLAPylkggkVG------LFGGAGVGKTVLIQELIhnIAQEHGG-ISVFAGVGERT----REG 163
Cdd:COG0056 138 DRQPVHEPLQTGIKAIDAMIP------IGrgqrelIIGDRQTGKTAIAIDTI--INQKGKDvICIYVAIGQKAstvaQVV 209
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 158262971 164 NDLywemKESGVIEKTAMVFGQMNEPPGARMRVALTGLTIAEYFRDvEGQDVLLFIDNIFRFTQAGSEVSALLGRMP 240
Cdd:COG0056 210 ETL----EEHGAMEYTIVVAATASDPAPLQYIAPYAGCAMGEYFMD-QGKDVLIVYDDLSKHAVAYRELSLLLRRPP 281
|
|
| ATP-synt_F1_beta_N |
cd18115 |
F1-ATP synthase beta (B) subunit, N-terminal domain; The beta (B) subunit of the F1 complex of ... |
1-51 |
1.80e-17 |
|
F1-ATP synthase beta (B) subunit, N-terminal domain; The beta (B) subunit of the F1 complex of FoF1-ATP synthase, N-terminal domain. The F-ATP synthase (also called FoF1-ATPase) is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinsic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Pssm-ID: 349739 [Multi-domain] Cd Length: 76 Bit Score: 74.48 E-value: 1.80e-17
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 158262971 1 ALVVykNDERKTKIVLEVALELGDGMVRTIAMESTDGLTRGMEVLDTGRPI 51
Cdd:cd18115 28 ALEV--KGDDGKKLVLEVQQHLGENTVRAIAMDSTDGLVRGMEVIDTGAPI 76
|
|
| PRK04192 |
PRK04192 |
V-type ATP synthase subunit A; Provisional |
51-251 |
3.74e-17 |
|
V-type ATP synthase subunit A; Provisional
Pssm-ID: 235248 [Multi-domain] Cd Length: 586 Bit Score: 80.21 E-value: 3.74e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158262971 51 ISVPVGKEtlGRVFNVLGD---TID-----LEAPFTEDAERQPIHK----KAPTFDELSTSSEILETGIKVIDLLAPYLK 118
Cdd:PRK04192 149 IMVPPGVS--GTVKEIVSEgdyTVDdtiavLEDEDGEGVELTMMQKwpvrRPRPYKEKLPPVEPLITGQRVIDTFFPVAK 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158262971 119 GGKVGLFGGAGVGKTVLIQELIHNIAQEhggISVFAGVGERtreGNdlywEMKE------------SG--VIEKTAMVFG 184
Cdd:PRK04192 227 GGTAAIPGPFGSGKTVTQHQLAKWADAD---IVIYVGCGER---GN----EMTEvleefpelidpkTGrpLMERTVLIAN 296
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 158262971 185 QMNEPPGARMRVALTGLTIAEYFRDVeGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLAT 251
Cdd:PRK04192 297 TSNMPVAAREASIYTGITIAEYYRDM-GYDVLLMADSTSRWAEALREISGRLEEMPGEEGYPAYLAS 362
|
|
| PRK09281 |
PRK09281 |
F0F1 ATP synthase subunit alpha; Validated |
15-240 |
1.00e-16 |
|
F0F1 ATP synthase subunit alpha; Validated
Pssm-ID: 236448 [Multi-domain] Cd Length: 502 Bit Score: 78.95 E-value: 1.00e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158262971 15 VLEVALELGDGMVRTIAMESTDGLTRGMEVLDTGRPISVPVGKETLGRVFNVLGDTIDLEAPFtEDAERQPIHKKAPTFD 94
Cdd:PRK09281 59 VYGIALNLEEDNVGAVILGDYEDIKEGDTVKRTGRILEVPVGEALLGRVVNPLGQPIDGKGPI-EATETRPVERKAPGVI 137
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158262971 95 ELSTSSEILETGIKVIDLLAPYLKGGKVGLFGGAGVGKTVLIQELIhnIAQEHGGI-----------SVFAGVGErtreg 163
Cdd:PRK09281 138 DRKSVHEPLQTGIKAIDAMIPIGRGQRELIIGDRQTGKTAIAIDTI--INQKGKDViciyvaigqkaSTVAQVVR----- 210
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 158262971 164 ndlywEMKESGVIEKTAMVFGQMNEPPGARMRVALTGLTIAEYFRDvEGQDVLLFIDNIFRFTQAGSEVSALLGRMP 240
Cdd:PRK09281 211 -----KLEEHGAMEYTIVVAATASDPAPLQYLAPYAGCAMGEYFMD-NGKDALIVYDDLSKQAVAYRQLSLLLRRPP 281
|
|
| PRK02118 |
PRK02118 |
V-type ATP synthase subunit B; Provisional |
35-245 |
2.95e-15 |
|
V-type ATP synthase subunit B; Provisional
Pssm-ID: 179373 [Multi-domain] Cd Length: 436 Bit Score: 74.30 E-value: 2.95e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158262971 35 TDGLTRGMEVLDTGRPISVPVGKETLGRVFNVLGDTIDLEApfteDAERQPIHKKAPTFDELS--TSSEILETGIKVIDL 112
Cdd:PRK02118 58 TRGISTGDEVVFLGRPMQVTYSESLLGRRFNGSGKPIDGGP----ELEGEPIEIGGPSVNPVKriVPREMIRTGIPMIDV 133
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158262971 113 LAPYLKGGKVGLFGGAGVGktvlIQELIHNIA-QEHGGISVFAGVGERtregNDLYW----EMKESGVIEKTAMVFGQMN 187
Cdd:PRK02118 134 FNTLVESQKIPIFSVSGEP----YNALLARIAlQAEADIIILGGMGLT----FDDYLffkdTFENAGALDRTVMFIHTAS 205
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 158262971 188 EPPGARMRVALTGLTIAEYFRDVEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGY 245
Cdd:PRK02118 206 DPPVECLLVPDMALAVAEKFALEGKKKVLVLLTDMTNFADALKEISITMDQIPSNRGY 263
|
|
| atpA |
CHL00059 |
ATP synthase CF1 alpha subunit |
36-240 |
7.42e-14 |
|
ATP synthase CF1 alpha subunit
Pssm-ID: 176999 [Multi-domain] Cd Length: 485 Bit Score: 70.38 E-value: 7.42e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158262971 36 DGLT--RGMEVLDTGRPISVPVGKETLGRVFNVLGDTIDLEAPFTEDAERqPIHKKAPTFDELSTSSEILETGIKVIDLL 113
Cdd:CHL00059 57 DGLMiqEGSSVKATGKIAQIPVSEAYLGRVVNALAKPIDGKGEISASESR-LIESPAPGIISRRSVYEPLQTGLIAIDSM 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158262971 114 APYLKGGKVGLFGGAGVGKTVLIQELIHNiAQEHGGISVFAGVGERTREGNDLYWEMKESGVIEKTAMVFGQMNEPPGAR 193
Cdd:CHL00059 136 IPIGRGQRELIIGDRQTGKTAVATDTILN-QKGQNVICVYVAIGQKASSVAQVVTTLQERGAMEYTIVVAETADSPATLQ 214
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 158262971 194 MRVALTGLTIAEYFRdVEGQDVLLFIDNIFRFTQAGSEVSALLGRMP 240
Cdd:CHL00059 215 YLAPYTGAALAEYFM-YRGRHTLIIYDDLSKQAQAYRQMSLLLRRPP 260
|
|
| PTZ00185 |
PTZ00185 |
ATPase alpha subunit; Provisional |
24-245 |
9.88e-14 |
|
ATPase alpha subunit; Provisional
Pssm-ID: 140212 [Multi-domain] Cd Length: 574 Bit Score: 70.07 E-value: 9.88e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158262971 24 DGMVRTIAMESTDGLTRGMEVLDTGRPISVPVGKETLGRVFNVLGDTIDL------EAPFTEDAERQPIHKKAPTFDELS 97
Cdd:PTZ00185 88 DGRIGIILMDNITEVQSGQKVMATGKLLYIPVGAGVLGKVVNPLGHEVPVglltrsRALLESEQTLGKVDAGAPNIVSRS 167
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158262971 98 TSSEILETGIKVIDLLAPYLKGGKVGLFGGAGVGKTVLIQELIHN-------IAQEHGGISVFAGVGERTREGNDLYWEM 170
Cdd:PTZ00185 168 PVNYNLLTGFKAVDTMIPIGRGQRELIVGDRQTGKTSIAVSTIINqvrinqqILSKNAVISIYVSIGQRCSNVARIHRLL 247
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 158262971 171 KESGVIEKTAMVFGQMNEPPGARMRVALTGLTIAEYFRDvEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGY 245
Cdd:PTZ00185 248 RSYGALRYTTVMAATAAEPAGLQYLAPYSGVTMGEYFMN-RGRHCLCVYDDLSKQAVAYRQISLLLRRPPGREAY 321
|
|
| V-ATPase_V1_B |
TIGR01040 |
V-type (H+)-ATPase V1, B subunit; This models eukaryotic vacuolar (H+)-ATPase that is ... |
18-245 |
1.10e-13 |
|
V-type (H+)-ATPase V1, B subunit; This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 273410 [Multi-domain] Cd Length: 466 Bit Score: 69.75 E-value: 1.10e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158262971 18 VALELGDGMVRT-------------IAMESTDGLTRGMEVLD-TGRPISVPVGKETLGRVFNVLGDTIDLEAP-FTE--- 79
Cdd:TIGR01040 27 VNLTLPDGTVRSgqvlevsgnkavvQVFEGTSGIDAKKTTCEfTGDILRTPVSEDMLGRVFNGSGKPIDKGPPvLAEdyl 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158262971 80 DAERQPIHKKAPTFDElstssEILETGIKVIDLLAPYLKGGKVGLFGGAG-------------VGKTVLIQELIHNIAQE 146
Cdd:TIGR01040 107 DINGQPINPYARIYPE-----EMIQTGISAIDVMNSIARGQKIPIFSAAGlphneiaaqicrqAGLVKLPTKDVHDGHED 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158262971 147 HGGIsVFAGVGERTREGNDLYWEMKESGVIEKTAMVFGQMNEPPGARMRVALTGLTIAEYFRDVEGQDVLLFIDNIFRFT 226
Cdd:TIGR01040 182 NFAI-VFAAMGVNMETARFFKQDFEENGSMERVCLFLNLANDPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMSSYA 260
|
250
....*....|....*....
gi 158262971 227 QAGSEVSALLGRMPSAVGY 245
Cdd:TIGR01040 261 DALREVSAAREEVPGRRGF 279
|
|
| PRK14698 |
PRK14698 |
V-type ATP synthase subunit A; Provisional |
139-251 |
2.71e-12 |
|
V-type ATP synthase subunit A; Provisional
Pssm-ID: 184795 [Multi-domain] Cd Length: 1017 Bit Score: 66.20 E-value: 2.71e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158262971 139 LIHNIAQEH-------GGISVFAGVGERTREGNDLYWEMKE-------SGVIEKTAMVFGQMNEPPGARMRVALTGLTIA 204
Cdd:PRK14698 666 LLHNTVTQHqlakwsdAQVVIYIGCGERGNEMTDVLEEFPKlkdpktgKPLMERTVLIANTSNMPVAAREASIYTGITIA 745
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 158262971 205 EYFRDVeGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLAT 251
Cdd:PRK14698 746 EYFRDM-GYDVALMADSTSRWAEALREISGRLEEMPGEEGYPAYLAS 791
|
|
| ATP-synt_ab_N |
pfam02874 |
ATP synthase alpha/beta family, beta-barrel domain; This family includes the ATP synthase ... |
13-48 |
5.37e-09 |
|
ATP synthase alpha/beta family, beta-barrel domain; This family includes the ATP synthase alpha and beta subunits the ATP synthase associated with flagella.
Pssm-ID: 427029 [Multi-domain] Cd Length: 69 Bit Score: 51.39 E-value: 5.37e-09
10 20 30
....*....|....*....|....*....|....*.
gi 158262971 13 KIVLEVALELGDGMVRTIAMESTDGLTRGMEVLDTG 48
Cdd:pfam02874 34 SLVLGEVLNLGGDKVRVQVFGGTSGLSRGDEVKRTG 69
|
|
| rho |
TIGR00767 |
transcription termination factor Rho; This RNA helicase, the transcription termination factor ... |
96-241 |
2.71e-06 |
|
transcription termination factor Rho; This RNA helicase, the transcription termination factor Rho, occurs in nearly all bacteria but is missing from the Cyanobacteria, the Mollicutes (Mycoplasmas), and various Lactobacillales including Streptococcus. It is also missing, of course, from the Archaea, which also lack Nus factors. Members of this family from Micrococcus luteus, Mycobacterium tuberculosis, and related species have a related but highly variable long, highly charged insert near the amino end. Members of this family differ in the specificity of RNA binding. [Transcription, Transcription factors]
Pssm-ID: 162030 [Multi-domain] Cd Length: 415 Bit Score: 47.76 E-value: 2.71e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158262971 96 LSTSSEILETgiKVIDLLAPYLKGGKVGLFGGAGVGKTVLIQELIHNIAQEHGGISVFAG-VGERTREGNDlyweMKESG 174
Cdd:TIGR00767 147 LETSTEDLST--RVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLlIDERPEEVTD----MQRSV 220
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 158262971 175 VIEKTAMVFgqmNEPPGARMRVAltGLTIAEYFRDVE-GQDVLLFIDNIFRFTQAGSEVSALLGRMPS 241
Cdd:TIGR00767 221 KGEVVASTF---DEPASRHVQVA--EMVIEKAKRLVEhKKDVVILLDSITRLARAYNTVTPASGKVLS 283
|
|
| rho_factor_C |
cd01128 |
C-terminal ATP binding domain of transcription termination factor rho; Transcription ... |
108-241 |
3.66e-06 |
|
C-terminal ATP binding domain of transcription termination factor rho; Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal oligonucleotide/oligosaccharide binding fold (OB-fold) domain which binds cysteine-rich nucleotides, and a C-terminal ATP binding domain. This alignment is of the C-terminal ATP binding domain.
Pssm-ID: 410872 [Multi-domain] Cd Length: 249 Bit Score: 46.81 E-value: 3.66e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158262971 108 KVIDLLAPYLKGGKVGLFGGAGVGKTVLIQELIHNIAQEHGGISVFAG-VGERTREGNDlyweMKESGVIEKTAMVFgqm 186
Cdd:cd01128 5 RVIDLIAPIGKGQRGLIVAPPKAGKTTLLQNIANAIAKNHPEVELIVLlIDERPEEVTD----MRRSVKGEVVASTF--- 77
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 158262971 187 NEPPGARMRVALTGLTIAEyfRDVE-GQDVLLFIDNIFRFTQAGSEVSALLGRMPS 241
Cdd:cd01128 78 DEPPERHVQVAEMVIEKAK--RLVEhGKDVVILLDSITRLARAYNTVVPSSGKTLS 131
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
118-239 |
7.07e-06 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 44.67 E-value: 7.07e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158262971 118 KGGKVGLFGGAGVGKTVLIQELIHNIAQEHGGISVFAGvgertregndlywEMKESGVIEKTAMVFGQMNEPPGARMRVA 197
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDG-------------EDILEEVLDQLLLIIVGGKKASGSGELRL 67
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 158262971 198 LTGLTIAEYFRdvegqDVLLFIDNIFRFTQAGSEVSALLGRM 239
Cdd:smart00382 68 RLALALARKLK-----PDVLILDEITSLLDAEQEALLLLLEE 104
|
|
| PRK07165 |
PRK07165 |
ATP F0F1 synthase subunit alpha; |
57-241 |
1.44e-03 |
|
ATP F0F1 synthase subunit alpha;
Pssm-ID: 235951 [Multi-domain] Cd Length: 507 Bit Score: 39.57 E-value: 1.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158262971 57 KETLGRVFNVLGDTIDLEA----PFTEDAERQPIHKKAPTFDELSTSSEILETGIKVIDLLAPYLKGGKVGLFGGAGVGK 132
Cdd:PRK07165 77 KEYFGKIIDIDGNIIYPEAqnplSKKFLPNTSSIFNLAHGLMTVKTLNEQLYTGIIAIDLLIPIGKGQRELIIGDRQTGK 156
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158262971 133 TVLIQELIhnIAQEHGGIS-VFAGVGERTREGNDLYWEMKESGVIEKTaMVFGQMNEPPGARMRVALTGLTIAE---YFr 208
Cdd:PRK07165 157 THIALNTI--INQKNTNVKcIYVAIGQKRENLSRIYETLKEHDALKNT-IIIDAPSTSPYEQYLAPYVAMAHAEnisYN- 232
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 158262971 209 dvegQDVLLFID------NIFRftqagsEVSALLGR------MPS 241
Cdd:PRK07165 233 ----DDVLIVFDdltkhaNIYR------EIALLTNKpvgkeaFPG 267
|
|
| PRK14698 |
PRK14698 |
V-type ATP synthase subunit A; Provisional |
82-172 |
1.52e-03 |
|
V-type ATP synthase subunit A; Provisional
Pssm-ID: 184795 [Multi-domain] Cd Length: 1017 Bit Score: 39.62 E-value: 1.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158262971 82 ERQPIHKKAPTFDELSTSSEILeTGIKVIDLLAPYLKGGKVGLFGGAGVGKTVLIQELIhnIAQEHGGISV------FAG 155
Cdd:PRK14698 191 QRWPVRVKRPYKEKLPPEVPLI-TGQRVIDTFFPQAKGGTAAIPGPFGSGKCVDGDTLI--LTKEFGLIKIkdlyeiLDG 267
|
90
....*....|....*..
gi 158262971 156 VGERTREGNDLYWEMKE 172
Cdd:PRK14698 268 KGKKTVEGNEEWTELEE 284
|
|
| rho |
PRK09376 |
transcription termination factor Rho; Provisional |
88-228 |
2.45e-03 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 236490 [Multi-domain] Cd Length: 416 Bit Score: 38.58 E-value: 2.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158262971 88 KKAPTFDELS----TSSEILETGI------KVIDLLAPYLKGGKvGLFggagV-----GKTVLIQELIHNIAQEHGGISV 152
Cdd:PRK09376 128 RNRPLFENLTplypNERLRLETGNpedlstRIIDLIAPIGKGQR-GLI----VappkaGKTVLLQNIANSITTNHPEVHL 202
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158262971 153 FAG-VGERTREGNDlyweMKES---GVIEKTamvfgqMNEPPGARMRVAltGLTIAEYFRDVE-GQDVLLFIDNIFRFTQ 227
Cdd:PRK09376 203 IVLlIDERPEEVTD----MQRSvkgEVVAST------FDEPAERHVQVA--EMVIEKAKRLVEhGKDVVILLDSITRLAR 270
|
.
gi 158262971 228 A 228
Cdd:PRK09376 271 A 271
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