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Conserved domains on  [gi|167030986|gb|ABZ05817|]
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microcystin synthetase associated thioesterase, partial [Planktothrix agardhii No257]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
GrsT super family cl42743
Surfactin synthase thioesterase subunit [Secondary metabolites biosynthesis, transport and ...
1-36 5.94e-09

Surfactin synthase thioesterase subunit [Secondary metabolites biosynthesis, transport and catabolism];


The actual alignment was detected with superfamily member COG3208:

Pssm-ID: 442441 [Multi-domain]  Cd Length: 237  Bit Score: 48.31  E-value: 5.94e-09
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 167030986   1 WWEQTNSAFSVEMFPGDHFFLHSAKSLVLECLGKSL 36
Cdd:COG3208  198 WREHTTGPFRLRVFPGGHFFLRDHPAELLALIRAAL 233
 
Name Accession Description Interval E-value
GrsT COG3208
Surfactin synthase thioesterase subunit [Secondary metabolites biosynthesis, transport and ...
1-36 5.94e-09

Surfactin synthase thioesterase subunit [Secondary metabolites biosynthesis, transport and catabolism];


Pssm-ID: 442441 [Multi-domain]  Cd Length: 237  Bit Score: 48.31  E-value: 5.94e-09
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 167030986   1 WWEQTNSAFSVEMFPGDHFFLHSAKSLVLECLGKSL 36
Cdd:COG3208  198 WREHTTGPFRLRVFPGGHFFLRDHPAELLALIRAAL 233
Thioesterase pfam00975
Thioesterase domain; Peptide synthetases are involved in the non-ribosomal synthesis of ...
1-36 4.58e-04

Thioesterase domain; Peptide synthetases are involved in the non-ribosomal synthesis of peptide antibiotics. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates. There are also modules within the peptide synthetases that also share this similarity. With respect to antibiotic production, thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Thioesterases (non-integrated) have molecular masses of 25-29 kDa.


Pssm-ID: 395776 [Multi-domain]  Cd Length: 223  Bit Score: 35.06  E-value: 4.58e-04
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 167030986    1 WWEQTNSAFSVEMFPGDHFFLHSAKSLVLECLGKSL 36
Cdd:pfam00975 188 VRDHTPGEFDVHVFDGDHFYLIEHLEAVLEIIEAKL 223
 
Name Accession Description Interval E-value
GrsT COG3208
Surfactin synthase thioesterase subunit [Secondary metabolites biosynthesis, transport and ...
1-36 5.94e-09

Surfactin synthase thioesterase subunit [Secondary metabolites biosynthesis, transport and catabolism];


Pssm-ID: 442441 [Multi-domain]  Cd Length: 237  Bit Score: 48.31  E-value: 5.94e-09
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 167030986   1 WWEQTNSAFSVEMFPGDHFFLHSAKSLVLECLGKSL 36
Cdd:COG3208  198 WREHTTGPFRLRVFPGGHFFLRDHPAELLALIRAAL 233
Thioesterase pfam00975
Thioesterase domain; Peptide synthetases are involved in the non-ribosomal synthesis of ...
1-36 4.58e-04

Thioesterase domain; Peptide synthetases are involved in the non-ribosomal synthesis of peptide antibiotics. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates. There are also modules within the peptide synthetases that also share this similarity. With respect to antibiotic production, thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Thioesterases (non-integrated) have molecular masses of 25-29 kDa.


Pssm-ID: 395776 [Multi-domain]  Cd Length: 223  Bit Score: 35.06  E-value: 4.58e-04
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 167030986    1 WWEQTNSAFSVEMFPGDHFFLHSAKSLVLECLGKSL 36
Cdd:pfam00975 188 VRDHTPGEFDVHVFDGDHFYLIEHLEAVLEIIEAKL 223
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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