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Conserved domains on  [gi|226716431|gb|ACO75569|]
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Putative phage-related transmembrane protein precursor [Laribacter hongkongensis HLHK9]

Protein Classification

phage holin family protein( domain architecture ID 11246428)

phage holin family protein may function in the transport of murein hydrolases (endolysins) across the cytoplasmic membrane to the cell wall where these enzymes hydrolyze the cell wall polymer as a prelude to cell lysis

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Phage_holin_8 pfam16931
Putative phage holin;
1-120 2.33e-32

Putative phage holin;


:

Pssm-ID: 435663  Cd Length: 123  Bit Score: 110.18  E-value: 2.33e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226716431    1 MLEPITPST-ASASLLAVALLTLFPGIDASVVLGAFAGSTVFVLSSRDPGRLSRVGFFAASFLIGLFAAGPVAALMNTLL 79
Cdd:pfam16931   1 MSEPLSATSaAAGALTGVGLASLLPGIDADVVLGAFAGAVFFVVSAADYTRLTRLIYFLVSFVAGVLAAGLAASLLATWL 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 226716431   80 PAT--VNDHVGALFASALAVRLLQWLIDMAADPLGLLARIRGG 120
Cdd:pfam16931  81 PGNdrVLDAVGALVASAVAVRLLMGLNEQAASSLFGLLRRRGG 123
 
Name Accession Description Interval E-value
Phage_holin_8 pfam16931
Putative phage holin;
1-120 2.33e-32

Putative phage holin;


Pssm-ID: 435663  Cd Length: 123  Bit Score: 110.18  E-value: 2.33e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226716431    1 MLEPITPST-ASASLLAVALLTLFPGIDASVVLGAFAGSTVFVLSSRDPGRLSRVGFFAASFLIGLFAAGPVAALMNTLL 79
Cdd:pfam16931   1 MSEPLSATSaAAGALTGVGLASLLPGIDADVVLGAFAGAVFFVVSAADYTRLTRLIYFLVSFVAGVLAAGLAASLLATWL 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 226716431   80 PAT--VNDHVGALFASALAVRLLQWLIDMAADPLGLLARIRGG 120
Cdd:pfam16931  81 PGNdrVLDAVGALVASAVAVRLLMGLNEQAASSLFGLLRRRGG 123
 
Name Accession Description Interval E-value
Phage_holin_8 pfam16931
Putative phage holin;
1-120 2.33e-32

Putative phage holin;


Pssm-ID: 435663  Cd Length: 123  Bit Score: 110.18  E-value: 2.33e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226716431    1 MLEPITPST-ASASLLAVALLTLFPGIDASVVLGAFAGSTVFVLSSRDPGRLSRVGFFAASFLIGLFAAGPVAALMNTLL 79
Cdd:pfam16931   1 MSEPLSATSaAAGALTGVGLASLLPGIDADVVLGAFAGAVFFVVSAADYTRLTRLIYFLVSFVAGVLAAGLAASLLATWL 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 226716431   80 PAT--VNDHVGALFASALAVRLLQWLIDMAADPLGLLARIRGG 120
Cdd:pfam16931  81 PGNdrVLDAVGALVASAVAVRLLMGLNEQAASSLFGLLRRRGG 123
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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