NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|237499928|gb|ACQ92521|]
View 

protein of unknown function DUF1407 [Tolumonas auensis DSM 9187]

Protein Classification

zinc ribbon domain-containing protein( domain architecture ID 10537594)

zinc ribbon domain-containing protein similar to Escherichia coli YfgJ

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
zinc-ribbons_6 pfam07191
zinc-ribbons; This family consists of several short, hypothetical bacterial proteins of around ...
 7-71 4.31e-24

zinc-ribbons; This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family have 8 highly conserved cysteine residues, which form two zinc ribbon domains.


:

Pssm-ID: 429341 [Multi-domain]  Cd Length: 64  Bit Score: 85.40  E-value: 4.31e-24
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 237499928   7 CPSCQQEgLDPRFATTTCVHCAKQFNLVAYCPTCHAELERLQACGAVDYFCNSCNSMISKRQAEY 71
Cdd:pfam07191  1 CPKCQQE-LEWRGGHYHCEACQEDFKLVALCPDCGQPLEVLKACGAVDYFCNHCNELISKKRVEF 64
 
Name Accession Description Interval E-value
zinc-ribbons_6 pfam07191
zinc-ribbons; This family consists of several short, hypothetical bacterial proteins of around ...
 7-71 4.31e-24

zinc-ribbons; This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family have 8 highly conserved cysteine residues, which form two zinc ribbon domains.


Pssm-ID: 429341 [Multi-domain]  Cd Length: 64  Bit Score: 85.40  E-value: 4.31e-24
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 237499928   7 CPSCQQEgLDPRFATTTCVHCAKQFNLVAYCPTCHAELERLQACGAVDYFCNSCNSMISKRQAEY 71
Cdd:pfam07191  1 CPKCQQE-LEWRGGHYHCEACQEDFKLVALCPDCGQPLEVLKACGAVDYFCNHCNELISKKRVEF 64
PRK14714 PRK14714
DNA-directed DNA polymerase II large subunit;
7-68 3.41e-04

DNA-directed DNA polymerase II large subunit;


Pssm-ID: 237798 [Multi-domain]  Cd Length: 1337  Bit Score: 36.98  E-value: 3.41e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 237499928    7 CPSCQQEGLDPRfatttCVHCAKQFNLVAYCPTCHAELERLQACGAVdyfCNSCNSMISKRQ 68
Cdd:PRK14714  670 CPSCGTETYENR-----CPDCGTHTEPVYVCPDCGAEVPPDESGRVE---CPRCDVELTPYQ 723
 
Name Accession Description Interval E-value
zinc-ribbons_6 pfam07191
zinc-ribbons; This family consists of several short, hypothetical bacterial proteins of around ...
 7-71 4.31e-24

zinc-ribbons; This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family have 8 highly conserved cysteine residues, which form two zinc ribbon domains.


Pssm-ID: 429341 [Multi-domain]  Cd Length: 64  Bit Score: 85.40  E-value: 4.31e-24
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 237499928   7 CPSCQQEgLDPRFATTTCVHCAKQFNLVAYCPTCHAELERLQACGAVDYFCNSCNSMISKRQAEY 71
Cdd:pfam07191  1 CPKCQQE-LEWRGGHYHCEACQEDFKLVALCPDCGQPLEVLKACGAVDYFCNHCNELISKKRVEF 64
PRK14714 PRK14714
DNA-directed DNA polymerase II large subunit;
7-68 3.41e-04

DNA-directed DNA polymerase II large subunit;


Pssm-ID: 237798 [Multi-domain]  Cd Length: 1337  Bit Score: 36.98  E-value: 3.41e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 237499928    7 CPSCQQEGLDPRfatttCVHCAKQFNLVAYCPTCHAELERLQACGAVdyfCNSCNSMISKRQ 68
Cdd:PRK14714  670 CPSCGTETYENR-----CPDCGTHTEPVYVCPDCGAEVPPDESGRVE---CPRCDVELTPYQ 723
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH