|
Name |
Accession |
Description |
Interval |
E-value |
| recA |
PRK09354 |
recombinase A; Provisional |
1-243 |
0e+00 |
|
recombinase A; Provisional
Pssm-ID: 236476 [Multi-domain] Cd Length: 349 Bit Score: 536.68 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 290795123 1 MDVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAAAQKVGKTCAFVDAEHALDPIYAQKLGVDIDAL 80
Cdd:PRK09354 36 MDVEVISTGSLALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNL 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 290795123 81 LVSQPDTGEQALEICDALARSGAIDVLVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQ 160
Cdd:PRK09354 116 LVSQPDTGEQALEIADTLVRSGAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGNISKSNTTVIFINQ 195
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 290795123 161 IRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAETQILYGKGFNREGEL 240
Cdd:PRK09354 196 IREKIGVMFGNPETTTGGNALKFYASVRLDIRRIGTIKDGDEVIGNRTKVKVVKNKVAPPFKQAEFDIMYGEGISREGEL 275
|
...
gi 290795123 241 IDL 243
Cdd:PRK09354 276 IDL 278
|
|
| RecA |
COG0468 |
RecA/RadA recombinase [Replication, recombination and repair]; |
1-243 |
0e+00 |
|
RecA/RadA recombinase [Replication, recombination and repair];
Pssm-ID: 440236 [Multi-domain] Cd Length: 351 Bit Score: 514.72 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 290795123 1 MDVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAAAQKVGKTCAFVDAEHALDPIYAQKLGVDIDAL 80
Cdd:COG0468 39 QDVEVISTGSLALDIALGVGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGIAAFIDAEHALDPEYAKKLGVDIDNL 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 290795123 81 LVSQPDTGEQALEICDALARSGAIDVLVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQ 160
Cdd:COG0468 119 LVSQPDTGEQALEIAETLVRSGAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGAISKSNTTVIFINQ 198
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 290795123 161 IRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAETQILYGKGFNREGEL 240
Cdd:COG0468 199 LREKIGVMFGNPETTTGGNALKFYASVRLDIRRIGTIKDGDEVIGNRTRVKVVKNKVAPPFKEAEFDIMYGEGISKEGEL 278
|
...
gi 290795123 241 IDL 243
Cdd:COG0468 279 LDL 281
|
|
| tigrfam_recA |
TIGR02012 |
protein RecA; This model describes orthologs of the recA protein. RecA promotes hybridization ... |
1-243 |
4.60e-174 |
|
protein RecA; This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 162659 [Multi-domain] Cd Length: 321 Bit Score: 481.48 E-value: 4.60e-174
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 290795123 1 MDVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAAAQKVGKTCAFVDAEHALDPIYAQKLGVDIDAL 80
Cdd:TIGR02012 31 MDVETISTGSLALDLALGVGGLPKGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNL 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 290795123 81 LVSQPDTGEQALEICDALARSGAIDVLVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQ 160
Cdd:TIGR02012 111 LVSQPDTGEQALEIAETLVRSGAVDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGALSKSNTTAIFINQ 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 290795123 161 IRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAETQILYGKGFNREGEL 240
Cdd:TIGR02012 191 IREKIGVMFGNPETTTGGNALKFYASVRLDIRRIGTVKQGEEVVGNRTKVKVVKNKVAPPFREAEFDILYGEGISKLGEI 270
|
...
gi 290795123 241 IDL 243
Cdd:TIGR02012 271 IDL 273
|
|
| RecA |
pfam00154 |
recA bacterial DNA recombination protein; RecA is a DNA-dependent ATPase and functions in DNA ... |
2-235 |
9.94e-169 |
|
recA bacterial DNA recombination protein; RecA is a DNA-dependent ATPase and functions in DNA repair systems. RecA protein catalyzes an ATP-dependent DNA strand-exchange reaction that is the central step in the repair of dsDNA breaks by homologous recombination.
Pssm-ID: 425488 [Multi-domain] Cd Length: 262 Bit Score: 465.72 E-value: 9.94e-169
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 290795123 2 DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAAAQKVGKTCAFVDAEHALDPIYAQKLGVDIDALL 81
Cdd:pfam00154 29 DVETISTGSLALDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLL 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 290795123 82 VSQPDTGEQALEICDALARSGAIDVLVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQI 161
Cdd:pfam00154 109 VSQPDTGEQALEIADMLVRSGAIDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGSISKSNTTVIFINQI 188
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 290795123 162 RMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAETQILYGKGFN 235
Cdd:pfam00154 189 REKIGVMFGNPETTTGGRALKFYASVRLDIRRIGQIKQGEEVIGNKTKVKVVKNKVAPPFKEAEFDIMYGEGIS 262
|
|
| RecA |
cd00983 |
recombinase A; RecA is a bacterial enzyme which has roles in homologous recombination, DNA ... |
2-236 |
6.02e-165 |
|
recombinase A; RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Pssm-ID: 410863 [Multi-domain] Cd Length: 235 Bit Score: 455.09 E-value: 6.02e-165
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 290795123 2 DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAAAQKVGKTCAFVDAEHALDPIYAQKLGVDIDALL 81
Cdd:cd00983 1 DVEVIPTGSLSLDIALGIGGLPRGRIIEIYGPESSGKTTLALHAIAEAQKLGGTAAFIDAEHALDPEYAKKLGVDIDNLL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 290795123 82 VSQPDTGEQALEICDALARSGAIDVLVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQI 161
Cdd:cd00983 81 VSQPDTGEQALEIADTLIRSGAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGSLSKSKTTVIFINQL 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 290795123 162 RMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAETQILYGKGFNR 236
Cdd:cd00983 161 REKIGVMFGNPETTTGGNALKFYASVRLDIRRIELIKEGEDVIGNRTKVKVVKNKVAPPFKQAEFDILYGEGISR 235
|
|
| recA |
PRK09519 |
intein-containing recombinase RecA; |
3-219 |
7.72e-107 |
|
intein-containing recombinase RecA;
Pssm-ID: 77219 [Multi-domain] Cd Length: 790 Bit Score: 325.89 E-value: 7.72e-107
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 290795123 3 VETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAAAQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLV 82
Cdd:PRK09519 38 ISVIPTGSIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLV 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 290795123 83 SQPDTGEQALEICDALARSGAIDVLVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIR 162
Cdd:PRK09519 118 SQPDTGEQALEIADMLIRSGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINQLR 197
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 290795123 163 MKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAA 219
Cdd:PRK09519 198 DKIGVMFGSPETTTGGKALKFYASVRMDVRRVETLKDGTNAVGNRTRVKVVKNKCLA 254
|
|
| RecA-like |
cd01393 |
RecA family; RecA is a bacterial enzyme which has roles in homologous recombination, DNA ... |
25-193 |
2.84e-58 |
|
RecA family; RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs RadA and RadB.
Pssm-ID: 410881 [Multi-domain] Cd Length: 185 Bit Score: 182.94 E-value: 2.84e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 290795123 25 GRIVEVYGPESSGKTTLTLELIAAAQKVGKTCAFVDAEHALDPIYAQ-----------KLGVDIDALLVSQPDTGEQALE 93
Cdd:cd01393 1 GKITEIYGPPGSGKTQLALQLAANALLLGGGVVWIDTEGAFPPSRLVqileaspsselELAEALSRLLYFRPPDTLAHLL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 290795123 94 ICDALARSGA----IDVLVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVMF 169
Cdd:cd01393 81 ALDSLPESLFpppnTSLVVVDSVSALFRKAFPRGGDGDSSSSLRARLLSQLARALQKLAAQFNLAVVVTNQVTTKIRGGS 160
|
170 180
....*....|....*....|....*
gi 290795123 170 G-NPETTTGGNALKFYASVRLDIRR 193
Cdd:cd01393 161 GaSLVPPALGNTWEHSVSTRLLLYR 185
|
|
| archRadB |
cd01394 |
archaeal RadB; The archaeal protein RadB shares similarity RadA, the archaeal functional ... |
6-166 |
1.42e-16 |
|
archaeal RadB; The archaeal protein RadB shares similarity RadA, the archaeal functional homologue to the bacterial RecA. The precise function of RadB is unclear.
Pssm-ID: 410882 [Multi-domain] Cd Length: 216 Bit Score: 75.81 E-value: 1.42e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 290795123 6 ISTGSLSLDIALGaGGLPMGRIVEVYGPESSGKTTLTLELIAAAQKVGKTCAFVDAEhALDP-----IYAQKLGVDIDAL 80
Cdd:cd01394 1 LSTGSKSLDSLLG-GGVERGTITQIYGPPGSGKTNICLQLAVEAAKQGKKVVYIDTE-GLSPerfqqIAGERFESIASNI 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 290795123 81 LVSQP-DTGEQALEICDA--LARSGAIDVLVIDSVAALTpKAEiegEMGDSHMglqARMLSQAMRKLTGNLKQSNCMAIF 157
Cdd:cd01394 79 IVFEPySFDEQGVAIQEAekLLKSDKVDLVVVDSATALY-RLE---LGDDSEA---NRELSRQMSKLLSIARKYDIPVVI 151
|
....*....
gi 290795123 158 INQIRMKIG 166
Cdd:cd01394 152 TNQVYSDID 160
|
|
| RAD55 |
COG0467 |
RecA-superfamily ATPase, KaiC/GvpD/RAD55 family [Signal transduction mechanisms]; |
6-173 |
1.94e-15 |
|
RecA-superfamily ATPase, KaiC/GvpD/RAD55 family [Signal transduction mechanisms];
Pssm-ID: 440235 [Multi-domain] Cd Length: 221 Bit Score: 72.64 E-value: 1.94e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 290795123 6 ISTGSLSLDIALGaGGLPMGRIVEVYGPESSGKTTLTLELIAAAQKVGKTCAFVDAEHALDPI--YAQKLGVDIDALLVS 83
Cdd:COG0467 2 VPTGIPGLDELLG-GGLPRGSSTLLSGPPGTGKTTLALQFLAEGLRRGEKGLYVSFEESPEQLlrRAESLGLDLEEYIES 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 290795123 84 -------------QPDTGEQALEICDALARSGAiDVLVIDSVAALTpkaeiegemgdsHMGLQARMLSQAMRKLTGNLKQ 150
Cdd:COG0467 81 gllriidlspeelGLDLEELLARLREAVEEFGA-KRVVIDSLSGLL------------LALPDPERLREFLHRLLRYLKK 147
|
170 180
....*....|....*....|...
gi 290795123 151 SNCMAIFINQIRMKIGVMFGNPE 173
Cdd:COG0467 148 RGVTTLLTSETGGLEDEATEGGL 170
|
|
| Rad51_DMC1_archRadA |
cd01123 |
recombinase Rad51, DMC1, and archaeal RadA; This group of recombinases includes the eukaryotic ... |
6-193 |
1.71e-13 |
|
recombinase Rad51, DMC1, and archaeal RadA; This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal protein RadA. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Pssm-ID: 410868 [Multi-domain] Cd Length: 234 Bit Score: 67.56 E-value: 1.71e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 290795123 6 ISTGSLSLDIALGaGGLPMGRIVEVYGPESSGKTTLTLELIAAAQ------KVGKTCAFVDAEHALDPI----YAQKLGV 75
Cdd:cd01123 1 ITTGSKELDKLLG-GGIETGSITEMFGEFRTGKTQLCHTLAVTCQlpidrgGGEGKAIYIDTEGTFRPErlraIAQRFGL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 290795123 76 DIDALL----VSQPDTGEQALEICDALA---RSGAIDVLVIDSVAALTPKAEI-EGEMGDSHMGLqARMLSQAMRkltgn 147
Cdd:cd01123 80 DPDDVLdnvaYARAFNSDHQTQLLDQAAammVESRFKLLIVDSATALYRTDYSgRGELSARQMHL-AKFLRMLQR----- 153
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 290795123 148 LKQSNCMAIFI-NQIRMKIG---VMFGNPETTTGGNALKFYASVRLDIRR 193
Cdd:cd01123 154 LADEFGVAVVVtNQVVAQVDgamMFAADPKKPIGGNILAHASTTRLYLRK 203
|
|
| COG4544 |
COG4544 |
Uncharacterized conserved protein [Function unknown]; |
3-119 |
3.64e-13 |
|
Uncharacterized conserved protein [Function unknown];
Pssm-ID: 443609 [Multi-domain] Cd Length: 230 Bit Score: 66.49 E-value: 3.64e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 290795123 3 VETISTGSLSLDIALGAGGLPMGRIVEVYGPE-SSGKTTLTLELIAAAQKVGKTCAFVDAEHALdpiYA---QKLGVDID 78
Cdd:COG4544 26 RAVLPTGFAALDAALPGGGLPRGALHEILGPApGIGELGLLLPLLARLAQAGGPVLWIAPPYDL---YApglAAAGLDPE 102
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 290795123 79 ALLVSQPDTGEQALEICDALARSGAIDVLVIDsVAALTPKA 119
Cdd:COG4544 103 RLLLVRARRPADALWAAEEALRSGACGAVVAW-LERLDLTA 142
|
|
| DMC1 |
cd19514 |
homologous-pairing protein DMC1; DMC1 has a central role in homologous recombination in ... |
6-193 |
1.22e-12 |
|
homologous-pairing protein DMC1; DMC1 has a central role in homologous recombination in meiosis. It assembles at the sites of programmed DNA double-strand breaks and carries out a search for allelic DNA sequences located on homologous chromatids. It forms octameric rings.
Pssm-ID: 410922 [Multi-domain] Cd Length: 236 Bit Score: 65.07 E-value: 1.22e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 290795123 6 ISTGSLSLDIALGaGGLPMGRIVEVYGPESSGKTTLTLELIAAAQ-------KVGKTCaFVDAEHALDP----IYAQKLG 74
Cdd:cd19514 1 ISTGSTELDKLLG-GGIESMSITEVFGEFRTGKTQLSHTLCVTAQlpgsmggGGGKVA-YIDTEGTFRPdrirPIAERFG 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 290795123 75 VDIDALL----VSQPDTGEQALEICDALA----RSGAIDVLVIDSVAAL-----TPKaeieGEMGDSHMGLqARMLSqam 141
Cdd:cd19514 79 VDHDAVLdnilYARAYTSEHQMELLDYVAakfhEEAVFRLLIIDSIMALfrvdfSGR----GELAERQQKL-AQMLS--- 150
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 290795123 142 rKLTGNLKQSNcMAIFI-NQIRMKIG--VMF-GNPETTTGGNALKFYASVRLDIRR 193
Cdd:cd19514 151 -RLQKISEEYN-VAVFItNQVTADPGaaMTFqADPKKPIGGHILAHASTTRISLRK 204
|
|
| Rad51 |
pfam08423 |
Rad51; Rad51 is a DNA repair and recombination protein and is a homolog of the bacterial ... |
6-193 |
2.65e-12 |
|
Rad51; Rad51 is a DNA repair and recombination protein and is a homolog of the bacterial ATPase RecA protein.
Pssm-ID: 462471 [Multi-domain] Cd Length: 255 Bit Score: 64.63 E-value: 2.65e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 290795123 6 ISTGSLSLDIALGaGGLPMGRIVEVYGPESSGKTTLTLELIAAAQ------KVGKTCAFVDAEHALDPI----YAQKLGV 75
Cdd:pfam08423 19 ITTGSKELDKLLG-GGIETGSITEIFGEFRTGKTQLCHTLCVTCQlplemgGGEGKALYIDTEGTFRPErlvaIAERYGL 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 290795123 76 DIDALLVSQP-------DTGEQALEICDALARSGAIDVLVIDSVAALTpKAEIE--GEMGDSHMglqarMLSQAMRKLTg 146
Cdd:pfam08423 98 DPEDVLDNVAyaraynsEHQMQLLQQAAAMMSESRFALLIVDSATALY-RTDFSgrGELAERQQ-----HLAKFLRTLQ- 170
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 290795123 147 NLKQSNCMAIFI-NQIRMKIG---VMF-GNPETTTGGNALKFYASVRLDIRR 193
Cdd:pfam08423 171 RLADEFGVAVVItNQVVAQVDgaaGMFsGDPKKPIGGHIMAHASTTRLSLRK 222
|
|
| ATPase |
pfam06745 |
KaiC; This family is in the P-loop NTPase superfamily and is found in archaea, bacteria and ... |
6-193 |
4.30e-12 |
|
KaiC; This family is in the P-loop NTPase superfamily and is found in archaea, bacteria and eukaryotes. More than one copy is sometimes found in each protein. This family includes KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria.
Pssm-ID: 429095 [Multi-domain] Cd Length: 231 Bit Score: 63.42 E-value: 4.30e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 290795123 6 ISTGSLSLDIALGaGGLPMGRIVEVYGPESSGKTTLTLE-LIAAAQKVGKTCAFVDA-EHALDPIY-AQKLGVDIDAL-- 80
Cdd:pfam06745 1 VKTGIPGLDEILK-GGFPEGRVVLITGGPGTGKTIFGLQfLYNGALKYGEPGVFVTLeEPPEDLREnARSFGWDLEKLee 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 290795123 81 --------LVSQP----------DTGEQALEICDALARSGAiDVLVIDSVAALtpkAEIEGEMgdshmglqarMLSQAMR 142
Cdd:pfam06745 80 egklaiidASTSGigiaevedrfDLEELIERLREAIREIGA-KRVVIDSITTL---FYLLKPA----------VAREILR 145
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 290795123 143 KLTGNLKQSNCMAIFINQIRMKigvmfgnpETTTGGNALKFYAS---VRLDIRR 193
Cdd:pfam06745 146 RLKRVLKGLGVTAIFTSEKPSG--------EGGIGGYGVEEFIVdgvIRLDLKE 191
|
|
| radA |
PRK04301 |
DNA repair and recombination protein RadA; Validated |
1-193 |
5.14e-11 |
|
DNA repair and recombination protein RadA; Validated
Pssm-ID: 235273 [Multi-domain] Cd Length: 317 Bit Score: 61.43 E-value: 5.14e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 290795123 1 MDVETISTGSLSLDIALGaGGLPMGRIVEVYGPESSGKTTLTLELIAAAQK------VGKTCAFVDAEHALDP--I--YA 70
Cdd:PRK04301 79 KNVGKITTGSKELDELLG-GGIETQSITEFYGEFGSGKTQICHQLAVNVQLpeekggLEGKAVYIDTEGTFRPerIeqMA 157
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 290795123 71 QKLGVDIDALL----VSQP-DTGEQALEICDA--LARSG-AIDVLVIDSVAALTpKAEI--EGEMGDSHMGLqARMLSQA 140
Cdd:PRK04301 158 EALGLDPDEVLdnihVARAyNSDHQMLLAEKAeeLIKEGeNIKLVIVDSLTAHF-RAEYvgRGNLAERQQKL-NKHLHDL 235
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 290795123 141 MRklTGNLkqSNCMAIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRR 193
Cdd:PRK04301 236 LR--LADL--YNAAVVVTNQVMARPDAFFGDPTQPIGGHILGHTATFRIYLRK 284
|
|
| KaiC-like |
cd01124 |
Circadian Clock Protein KaiC; KaiC is a circadian clock protein, most studied in cyanobacteria. ... |
6-162 |
6.03e-11 |
|
Circadian Clock Protein KaiC; KaiC is a circadian clock protein, most studied in cyanobacteria. KaiC, an autokinase, autophosphatase, and ATPase, is part of the core oscillator, composed of three proteins: KaiA, KaiB, and KaiC. The circadian oscillation is regulated via KaiC phosphorylation.
Pssm-ID: 410869 [Multi-domain] Cd Length: 222 Bit Score: 60.36 E-value: 6.03e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 290795123 6 ISTGSLSLDIALGaGGLPMGRIVEVYGPESSGKTTLTLELIAAAQKVGKTCAFVDAEHALDPIYAQ--KLGVDIDA---- 79
Cdd:cd01124 1 VKTGIPGLDELLG-GGIPKGSVTLLTGGPGTGKTLFGLQFLYAGAKNGEPGLFFTFEESPERLLRNakSFGWDFDEmede 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 290795123 80 --LLVSQPDTGEQALEICDALA-------RSGAIDVLVIDSVAALTPKAEiegemgdshmglQARMLSQAMRKLTGNLKQ 150
Cdd:cd01124 80 gkLIIVDAPPTEAGRFSLDELLsrilsiiKSFKAKRVVIDSLSGLRRAKE------------DQMRARRIVIALLNELRA 147
|
170
....*....|..
gi 290795123 151 SNCMAIFINQIR 162
Cdd:cd01124 148 AGVTTIFTSEMR 159
|
|
| archRadA |
cd19515 |
archaeal recombinase Rad51/RadA; This group includes the archaeal protein RadA which is a ... |
6-198 |
1.28e-10 |
|
archaeal recombinase Rad51/RadA; This group includes the archaeal protein RadA which is a homolog of Rad51. RAD51 recombinase plays an essential role in DNA repair by homologous recombination (HR)
Pssm-ID: 410923 [Multi-domain] Cd Length: 233 Bit Score: 59.30 E-value: 1.28e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 290795123 6 ISTGSLSLDIALGaGGLPMGRIVEVYGPESSGKTTLTLELIAAAQK------VGKTCAFVDAEHALDP----IYAQKLGV 75
Cdd:cd19515 1 ISTGSKELDKLLG-GGIETQAITEVFGEFGSGKTQLCHQLAVNVQLppeeggLNGKAVYIDTENTFRPerimQMAKALGL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 290795123 76 DIDALL----VSQP-DTGEQAL---EICDALARSGAIDVLVIDSVAALTpKAEI--EGEMGDSHMGLqARMLSQAMRklT 145
Cdd:cd19515 80 DPDEVLdniyVARAyNSNHQMLlveKAEDLIKEGNNIKLLIVDSLTSHF-RAEYvgRGTLAERQQKL-NKHLHDLHR--L 155
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 290795123 146 GNLkqSNCMAIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIK 198
Cdd:cd19515 156 ADL--YNIAVLVTNQVMAKPDAFFGDPTQAIGGHILGHAATFRVYLRKGKGGK 206
|
|
| recomb_radB |
TIGR02237 |
DNA repair and recombination protein RadB; This family consists exclusively of archaeal RadB ... |
13-166 |
3.64e-10 |
|
DNA repair and recombination protein RadB; This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Pssm-ID: 274047 [Multi-domain] Cd Length: 209 Bit Score: 57.81 E-value: 3.64e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 290795123 13 LDIALGaGGLPMGRIVEVYGPESSGKTTLTLELIAAAQKVGKTCAFVDAEHALDPIYAQKLGVDIDALL----VSQP-DT 87
Cdd:TIGR02237 1 IDELLG-GGVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALsnfiVFEVfDF 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 290795123 88 GEQALEICDA--LARSGAIDVLVIDSVAALTpKAEIEGEMGDSHmglqaRMLSQAMRKLTGNLKQSNCMAIFINQIRMKI 165
Cdd:TIGR02237 80 DEQGVAIQKTskFIDRDSASLVVVDSFTALY-RLELSDDRISRN-----RELARQLTLLLSLARKKNLAVVITNQVYTDV 153
|
.
gi 290795123 166 G 166
Cdd:TIGR02237 154 N 154
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
25-193 |
1.19e-09 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 55.46 E-value: 1.19e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 290795123 25 GRIVEVYGPESSGKTTLTLELIAAAQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSqpDTGEQALEICDALARSGAI 104
Cdd:smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKAS--GSGELRLRLALALARKLKP 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 290795123 105 DVLVIDSVAALTPKAEiegemgdshmgLQARMLSQAMRKLTGNLKQSNCMAIFINqirmkigvmfgNPETTTGGNALKFY 184
Cdd:smart00382 80 DVLILDEITSLLDAEQ-----------EALLLLLEELRLLLLLKSEKNLTVILTT-----------NDEKDLGPALLRRR 137
|
....*....
gi 290795123 185 ASVRLDIRR 193
Cdd:smart00382 138 FDRRIVLLL 146
|
|
| radB |
PRK09361 |
DNA repair and recombination protein RadB; Provisional |
4-166 |
3.46e-09 |
|
DNA repair and recombination protein RadB; Provisional
Pssm-ID: 236482 [Multi-domain] Cd Length: 225 Bit Score: 55.25 E-value: 3.46e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 290795123 4 ETISTGSLSLDIALGaGGLPMGRIVEVYGPESSGKTTLTLELIAAAQKVGKTCAFVDAEhALDPI-YAQKLGVDIDALL- 81
Cdd:PRK09361 3 ERLPTGCKMLDELLG-GGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE-GLSPErFKQIAGEDFEELLs 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 290795123 82 ---VSQP-DTGEQALEICDALARSGA-IDVLVIDSVAALTpKAEIEGEMGDSHMglqARMLSQAMRKLTGNLKQSNCMAI 156
Cdd:PRK09361 81 niiIFEPsSFEEQSEAIRKAEKLAKEnVGLIVLDSATSLY-RLELEDEEDNSKL---NRELGRQLTHLLKLARKHDLAVV 156
|
170
....*....|
gi 290795123 157 FINQIRMKIG 166
Cdd:PRK09361 157 ITNQVYSDID 166
|
|
| recomb_DMC1 |
TIGR02238 |
meiotic recombinase Dmc1; This model describes DMC1, a subfamily of a larger family of DNA ... |
3-193 |
1.29e-08 |
|
meiotic recombinase Dmc1; This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Pssm-ID: 131292 [Multi-domain] Cd Length: 313 Bit Score: 54.40 E-value: 1.29e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 290795123 3 VETISTGSLSLDIALGAGGLPMGrIVEVYGPESSGKTTLTLELIAAAQ-------KVGKTCaFVDAEHALDP----IYAQ 71
Cdd:TIGR02238 75 VLKITTGSQALDGILGGGIESMS-ITEVFGEFRCGKTQLSHTLCVTAQlpremggGNGKVA-YIDTEGTFRPdrirAIAE 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 290795123 72 KLGVDIDA----LLVSQPDTGEQALEICDALARSGAID---VLVIDSVAAL-TPKAEIEGEMGDshmglQARMLSQAMRK 143
Cdd:TIGR02238 153 RFGVDPDAvldnILYARAYTSEHQMELLDYLAAKFSEEpfrLLIVDSIMALfRVDFSGRGELSE-----RQQKLAQMLSR 227
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 290795123 144 LTGNLKQSNCMAIFINQIRMKIG--VMF-GNPETTTGGNALKFYASVRLDIRR 193
Cdd:TIGR02238 228 LNKISEEFNVAVFVTNQVQADPGatMTFiADPKKPIGGHVLAHASTTRILLRK 280
|
|
| Rad51B |
cd19493 |
RAD51B recombinase; RAD51B recombinase, a RAD51 paralog, plays an important role in DNA repair ... |
14-193 |
1.11e-07 |
|
RAD51B recombinase; RAD51B recombinase, a RAD51 paralog, plays an important role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. RAD51B, together with the other RAD51 paralogs, RAD51C, RAD51D, XRCC3, and XRCC2, helps recruit RAD51 to the break site.
Pssm-ID: 410901 [Multi-domain] Cd Length: 222 Bit Score: 50.78 E-value: 1.11e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 290795123 14 DIALGaGGLPMGRIVEVYGPESSGKTTLTLELIAAA----QKVGKT--CAFVDAEHALDP-----IYAQK---------- 72
Cdd:cd19493 1 DTALA-GGLPLGAITEITGASGSGKTQFALTLASSAampaRKGGLDggVLYIDTESKFSAerlaeIAEARfpeafsgfme 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 290795123 73 ----LGVDIDALLVSQPDTGEQALEICDAL---ARSGAIDVLVIDSVAALTPKaeiegEMGDSHMGLQARMlsQAMRKLT 145
Cdd:cd19493 80 enerAEEMLKRVAVVRVTTLAQLLERLPNLeehILSSGVRLVVIDSIAALVRR-----EFGGSDGEVTERH--NALAREA 152
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 290795123 146 GNLK---QSNCMAIF-INQIRMKIGVMFGNPETTTG--GNALKFYASVRLDIRR 193
Cdd:cd19493 153 SSLKrlaEEFRIAVLvTNQATTHFGDAGDGSSGVTAalGDAWAHAVNTRLRLER 206
|
|
| XRCC3 |
cd19491 |
XRCC3 recombinase; XRCC3 (X-ray repair complementing defective repair in Chinese hamster cells ... |
13-161 |
1.34e-07 |
|
XRCC3 recombinase; XRCC3 (X-ray repair complementing defective repair in Chinese hamster cells 3) recombinase, a RAD51 paralog, plays an important role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. XRCC3, together with the other RAD51 paralogs, RAD51B, RAD51C, RAD51D, and XRCC2, helps recruit RAD51 to the break site.
Pssm-ID: 410899 [Multi-domain] Cd Length: 250 Bit Score: 50.75 E-value: 1.34e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 290795123 13 LDIALGaGGLPMGRIVEVYGPESSGKTTLTLELIAAAQ------KVGKTCAFVDAEHAL----------------DPIYA 70
Cdd:cd19491 1 LDELLG-GGIPVGGITEIAGESGAGKTQLCLQLALTVQlprelgGLGGGAVYICTESSFpskrlqqlasslpkryHLEKA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 290795123 71 QKLGVDIdaLLVSQPDTgeQALEIC-----DALARSGAIDVLVIDSVAALtpkaeIEGEMGDSHMGLQARmlSQAMRKLT 145
Cdd:cd19491 80 KNFLDNI--FVEHVADL--ETLEHClnyqlPALLERGPIRLVVIDSIAAL-----FRSEFDTSRSDLVER--AKYLRRLA 148
|
170 180
....*....|....*....|
gi 290795123 146 GNLKQ----SNCMAIFINQI 161
Cdd:cd19491 149 DHLKRladkYNLAVVVVNQV 168
|
|
| PTZ00035 |
PTZ00035 |
Rad51 protein; Provisional |
6-193 |
7.37e-07 |
|
Rad51 protein; Provisional
Pssm-ID: 185407 [Multi-domain] Cd Length: 337 Bit Score: 49.23 E-value: 7.37e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 290795123 6 ISTGSLSLDIALGaGGLPMGRIVEVYGPESSGKTTLTLELIAAAQKV-------GKtCAFVDAEHALDP-----IyAQKL 73
Cdd:PTZ00035 100 ITTGSTQLDKLLG-GGIETGSITELFGEFRTGKTQLCHTLCVTCQLPieqgggeGK-VLYIDTEGTFRPerivqI-AERF 176
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 290795123 74 GVDIDALL----VSQPDTGEQALEICDALARSGAID---VLVIDSVAALTpkaEIE----GEMGDSHMGLqARMLSQAMR 142
Cdd:PTZ00035 177 GLDPEDVLdniaYARAYNHEHQMQLLSQAAAKMAEErfaLLIVDSATALF---RVDysgrGELAERQQHL-GKFLRALQK 252
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 290795123 143 kltgnLKQSNCMAIFI-NQIRMKIG---VMFGNPETTTGGNALKFYASVRLDIRR 193
Cdd:PTZ00035 253 -----LADEFNVAVVItNQVMADVDgasMFVADPKKPIGGHIIAHASTTRLSLRK 302
|
|
| Rad51 |
cd19513 |
RAD51D recombinase; RAD51 recombinase plays an essential role in DNA repair by homologous ... |
6-193 |
1.08e-06 |
|
RAD51D recombinase; RAD51 recombinase plays an essential role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. RAD51 is recruited to the break site with the help of its paralogs, RAD51D, RAD51B, RAD51C, XRCC3, and XRCC2, where it forms long helical polymers which wrap around the ssDNA tail at the break which leads to pairing and strand invasion.
Pssm-ID: 410921 [Multi-domain] Cd Length: 235 Bit Score: 48.08 E-value: 1.08e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 290795123 6 ISTGSLSLDIALGaGGLPMGRIVEVYGPESSGKTTLTLELIAAAQ-------KVGKtCAFVDAEHALDP----IYAQKLG 74
Cdd:cd19513 1 ITTGSKELDKLLG-GGIETGSITELFGEFRTGKTQLCHTLAVTCQlpidqggGEGK-ALYIDTEGTFRPerllAIAERYG 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 290795123 75 VDIDALL--VS-----QPDTGEQALEICDALARSGAIDVLVIDSVAALTpKAEIEGEmGDshmgLQARM--LSQAMRKLT 145
Cdd:cd19513 79 LNGEDVLdnVAyarayNTDHQMQLLIQASAMMAESRYALLIVDSATALY-RTDYSGR-GE----LSARQmhLAKFLRMLQ 152
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 290795123 146 gNLKQSNCMAIFI-NQIRMKI--GVMF-GNPETTTGGNALKFYASVRLDIRR 193
Cdd:cd19513 153 -RLADEFGVAVVItNQVVAQVdgAAMFaGDPKKPIGGNIMAHASTTRLYLRK 203
|
|
| RadA_SMS_N |
cd01121 |
bacterial RadA DNA repair protein; Sms or bacterial RadA is a DNA repair protein that plays a ... |
2-112 |
5.98e-06 |
|
bacterial RadA DNA repair protein; Sms or bacterial RadA is a DNA repair protein that plays a role in recombination and recombinational repair of DNA damaged by UV radiation, X-rays, and chemical agent and is responsible for the stabilization or processing of branched DNA molecules.
Pssm-ID: 410866 [Multi-domain] Cd Length: 268 Bit Score: 45.99 E-value: 5.98e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 290795123 2 DVETISTGSLSLDIALGaGGLPMGRIVEVYGPESSGKTTLTLELIAAAQKVGKTCAFVDAEHALDPI--YAQKLGVDIDA 79
Cdd:cd01121 60 EEERISTGIGELDRVLG-GGLVPGSVVLIGGDPGIGKSTLLLQVAARLAQRGGKVLYVSGEESLSQIklRAERLGLGSDN 138
|
90 100 110
....*....|....*....|....*....|...
gi 290795123 80 LLVsqpdTGEQALEICDALARSGAIDVLVIDSV 112
Cdd:cd01121 139 LYL----LAETNLEAILAEIEELKPSLVVIDSI 167
|
|
| KaiC-like_N |
cd19488 |
N-terminal domain of KaiC family protein; uncharacterized subfamily; KaiC is a circadian clock ... |
6-59 |
8.58e-06 |
|
N-terminal domain of KaiC family protein; uncharacterized subfamily; KaiC is a circadian clock protein, most studied in cyanobacteria. KaiC, an autokinase, autophosphatase, and ATPase, is part of the core oscillator, composed of three proteins: KaiA, KaiB, and KaiC. The circadian oscillation is regulated via KaiC phosphorylation.
Pssm-ID: 410896 [Multi-domain] Cd Length: 225 Bit Score: 45.42 E-value: 8.58e-06
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 290795123 6 ISTGSLSLDIALGaGGLPMGRIVEVYGPESSGKTTLTLELIAAAQKVGKTCAFV 59
Cdd:cd19488 1 ISTGIPGLDDILR-GGLPPRRLYLVEGAPGTGKTTLALQFLLEGAANGETGLYI 53
|
|
| AAA_22 |
pfam13401 |
AAA domain; |
26-119 |
2.98e-05 |
|
AAA domain;
Pssm-ID: 379165 [Multi-domain] Cd Length: 129 Bit Score: 42.33 E-value: 2.98e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 290795123 26 RIVEVYGPESSGKTTLTLELIAAAQKVGKTCAFVDAEHALDPI-YAQKLGVDIDALLVSQPDTGEQALEICDALARSGAI 104
Cdd:pfam13401 6 GILVLTGESGTGKTTLLRRLLEQLPEVRDSVVFVDLPSGTSPKdLLRALLRALGLPLSGRLSKEELLAALQQLLLALAVA 85
|
90
....*....|....*
gi 290795123 105 DVLVIDSVAALTPKA 119
Cdd:pfam13401 86 VVLIIDEAQHLSLEA 100
|
|
| recA |
PRK09519 |
intein-containing recombinase RecA; |
212-243 |
3.18e-05 |
|
intein-containing recombinase RecA;
Pssm-ID: 77219 [Multi-domain] Cd Length: 790 Bit Score: 44.70 E-value: 3.18e-05
10 20 30
....*....|....*....|....*....|..
gi 290795123 212 VVKNKIAAPFKQAETQILYGKGFNREGELIDL 243
Cdd:PRK09519 687 VVVHNCSPPFKQAEFDILYGKGISREGSLIDM 718
|
|
| recomb_RAD51 |
TIGR02239 |
DNA repair protein RAD51; This eukaryotic sequence family consists of RAD51, a protein ... |
2-193 |
5.71e-05 |
|
DNA repair protein RAD51; This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Pssm-ID: 274048 [Multi-domain] Cd Length: 316 Bit Score: 43.56 E-value: 5.71e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 290795123 2 DVETISTGSLSLDIALGaGGLPMGRIVEVYGPESSGKTTLTLELIAAAQ-------KVGKtCAFVDAEHALDPI----YA 70
Cdd:TIGR02239 74 EVIQLTTGSKELDKLLG-GGIETGSITEIFGEFRTGKTQLCHTLAVTCQlpidqggGEGK-ALYIDTEGTFRPErllaIA 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 290795123 71 QKLGVDIDALL--VS-----QPDTGEQALEICDALARSGAIDVLVIDSVAALTPKAEI-EGEMGDS--HMGLQARMLSqa 140
Cdd:TIGR02239 152 ERYGLNPEDVLdnVAyarayNTDHQLQLLQQAAAMMSESRFALLIVDSATALYRTDFSgRGELSARqmHLARFLRSLQ-- 229
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 290795123 141 mrkltgNLKQSNCMAIFI-NQIRMKI---GVMF-GNPETTTGGNALKFYASVRLDIRR 193
Cdd:TIGR02239 230 ------RLADEFGVAVVItNQVVAQVdgaGSMFaGDPKKPIGGNIMAHASTTRLSLRK 281
|
|
| PLN03186 |
PLN03186 |
DNA repair protein RAD51 homolog; Provisional |
2-193 |
6.85e-05 |
|
DNA repair protein RAD51 homolog; Provisional
Pssm-ID: 178728 [Multi-domain] Cd Length: 342 Bit Score: 43.18 E-value: 6.85e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 290795123 2 DVETISTGSLSLDIALGaGGLPMGRIVEVYGPESSGKTTLTLELIAAAQ-------KVGKtCAFVDAEHALDP----IYA 70
Cdd:PLN03186 101 EIIQITTGSRELDKILE-GGIETGSITEIYGEFRTGKTQLCHTLCVTCQlpldqggGEGK-AMYIDTEGTFRPqrliQIA 178
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 290795123 71 QKLGVDIDALL----VSQPDTGEQALEICDALARSGAID---VLVIDSVAALTpKAEIEGEmGDshmgLQAR--MLSQAM 141
Cdd:PLN03186 179 ERFGLNGADVLenvaYARAYNTDHQSELLLEAASMMAETrfaLMIVDSATALY-RTEFSGR-GE----LSARqmHLGKFL 252
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 290795123 142 RKLTgNLKQSNCMAIFI-NQIRMKI--GVMFGNPETT-TGGNALKFYASVRLDIRR 193
Cdd:PLN03186 253 RSLQ-RLADEFGVAVVItNQVVAQVdgSAFFAGPQLKpIGGNIMAHASTTRLALRK 307
|
|
| FlaH |
COG2874 |
Archaellum biogenesis ATPase ArlH/FlaH [Cell motility]; |
4-116 |
8.52e-05 |
|
Archaellum biogenesis ATPase ArlH/FlaH [Cell motility];
Pssm-ID: 442121 Cd Length: 230 Bit Score: 42.51 E-value: 8.52e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 290795123 4 ETISTGSLSLDIALGaGGLPMGRIVEVYGPESSGKTTLTLELIAAAQKVGKTCAFVDAEHA----LDPIYAQKLGVdIDA 79
Cdd:COG2874 1 EIISTGNDELDKRLG-GGIPLGSLVLIEGENGTGKSVLSQQFAYGALENGLSVTYISTELTtkefIKQMKSLSYDI-SDY 78
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 290795123 80 LL-----------VSQPDTGEQALEICDALARSGAI-----DVLVIDSVAALT 116
Cdd:COG2874 79 LLrgrllflpvhpLGFEWNSKQRKDLLKRLMKYIASnlweaDVIIIDSLSALL 131
|
|
| XRCC2 |
cd19490 |
XRCC2 recombinase; XRCC2 (X-ray repair complementing defective repair in Chinese hamster cells ... |
25-166 |
1.32e-04 |
|
XRCC2 recombinase; XRCC2 (X-ray repair complementing defective repair in Chinese hamster cells 2) recombinase, a RAD51 paralog, plays an important role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. XRCC2, together with the other RAD51 paralogs, RAD51B, RAD51C, RAD51D, and XRCC3, helps recruit RAD51 to the break site.
Pssm-ID: 410898 [Multi-domain] Cd Length: 226 Bit Score: 41.95 E-value: 1.32e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 290795123 25 GRIVEVYGPESSGKTTLTLELIAAA---------QKVGKTCA--FVDAEHALDP-----IYAQKLGVDIDALLVSQPDTG 88
Cdd:cd19490 1 GDVIEITGPSGSGKTELLYHLAARCilpsswggvPLGGLEAAvvFIDTDGRFDIlrlrsILEARIRAAIQAANSSDDEED 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 290795123 89 -EQALEIC--------------------------DALARSGAIDVLVIDSVAAL-----TPKAEIEGEMGDSHMGLQArm 136
Cdd:cd19490 81 vEEIAREClqrlhifrchsslqllatllslenylLSLSANPELGLLLIDSISAFywqdrFSAELARAAPLLQEAALRA-- 158
|
170 180 190
....*....|....*....|....*....|
gi 290795123 137 LSQAMRKLTgnlKQSNCMAIFINQIRMKIG 166
Cdd:cd19490 159 ILRELRRLR---RRFQLVVIATKQALFPGK 185
|
|
| Rad51C |
cd19492 |
RAD51C recombinase; RAD51C recombinase, a RAD51 paralog, plays an important role in DNA repair ... |
25-166 |
2.15e-04 |
|
RAD51C recombinase; RAD51C recombinase, a RAD51 paralog, plays an important role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. RAD51C, together with the other RAD51 paralogs, RAD51B, RAD51D, XRCC3, and XRCC2, helps recruit RAD51 to the break site. Additionally, RAD51C acts as a mediator in the early steps of DNA damage signaling.
Pssm-ID: 410900 [Multi-domain] Cd Length: 172 Bit Score: 40.67 E-value: 2.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 290795123 25 GRIVEVYGPESSGKTTLTLELIAAAQ------KVGKTCAFVDAE-----HALDPI-YAQKLGVdIDAL---LVSQPDtge 89
Cdd:cd19492 1 GKITEICGVPGVGKTQLCMQLAVNVQipkcfgGLAGEAIYIDTEgsfniHYFRVHdYVELLAL-INSLpkfLEDHPK--- 76
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 290795123 90 qaleicdalarsgaIDVLVIDSVAaLTPKAEIEgemgdsHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIG 166
Cdd:cd19492 77 --------------VKLIVVDSIA-FPFRHDFD------DLAQRTRLLNGLAQLLHSLARQHNLAVVLTNQVTTKIS 132
|
|
| PRK06067 |
PRK06067 |
flagellar accessory protein FlaH; Validated |
2-122 |
3.82e-04 |
|
flagellar accessory protein FlaH; Validated
Pssm-ID: 180381 Cd Length: 234 Bit Score: 40.73 E-value: 3.82e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 290795123 2 DVETISTGSLSLDIALGaGGLPMGRIVEVYGPESSGKTTLTLELIAAAQKVGKTCAFVDAEHALDPIYAQKLGVDIDall 81
Cdd:PRK06067 3 KKEIISTGNEELDRKLG-GGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLKQMESVKID--- 78
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 290795123 82 VSQ--------------------PDTGEQALEICDALARSGAIDVLVIDSVAALTPKAEIE 122
Cdd:PRK06067 79 ISDfflwgylrifplntegfewnSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEED 139
|
|
| AAA_24 |
pfam13479 |
AAA domain; This AAA domain is found in a wide variety of presumed phage proteins. |
24-112 |
4.54e-04 |
|
AAA domain; This AAA domain is found in a wide variety of presumed phage proteins.
Pssm-ID: 433243 Cd Length: 199 Bit Score: 40.00 E-value: 4.54e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 290795123 24 MGRIVEVYGPESSGKTTLTLELiaaaqkvGKTcAFVDAEHALDPIYAQKLGVDIDallvsqPDTGEQALEICDALARSG- 102
Cdd:pfam13479 1 KKLKILIYGPSGIGKTTFAKTL-------PKP-LFLDTEKGSKALDGDRFPDIVI------RDSWQDFLDAIDELTAAEl 66
|
90
....*....|.
gi 290795123 103 -AIDVLVIDSV 112
Cdd:pfam13479 67 aDYKTIVIDTV 77
|
|
| KaiC_C |
cd19484 |
C-terminal domain of Circadian Clock Protein KaiC; KaiC is a circadian clock protein, most ... |
6-159 |
4.79e-04 |
|
C-terminal domain of Circadian Clock Protein KaiC; KaiC is a circadian clock protein, most studied in cyanobacteria. KaiC, an autokinase, autophosphatase, and ATPase, is part of the core oscillator, composed of three proteins: KaiA, KaiB, and KaiC. The circadian oscillation is regulated via KaiC phosphorylation.
Pssm-ID: 410892 [Multi-domain] Cd Length: 218 Bit Score: 40.00 E-value: 4.79e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 290795123 6 ISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAAAQKVGKTCAFVDAEHALDPIY--AQKLGVDIDALLVS 83
Cdd:cd19484 1 ISTGIPRLDAMLGGGGFFRGSSILVSGATGTGKTLLAASFADAACRRGERCLYFAFEESPAQLIrnAKSIGIDLEQMERK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 290795123 84 Q---------PDTG-EQALEICDALARSGAIDVLVIDSVAALTpkaeiegeMGDSHMGLQARMLsqamrKLTGNLKQSNC 153
Cdd:cd19484 81 GllkiicarpELYGlEDHLIIIKSEINEFKPSRVIVDPLSALA--------RGGSLNEVKEFVI-----RLIDYLKSQEI 147
|
....*.
gi 290795123 154 MAIFIN 159
Cdd:cd19484 148 TGLFTN 153
|
|
| RepA |
COG3598 |
RecA-family ATPase [Replication, recombination and repair]; |
22-144 |
6.18e-04 |
|
RecA-family ATPase [Replication, recombination and repair];
Pssm-ID: 442817 [Multi-domain] Cd Length: 313 Bit Score: 40.27 E-value: 6.18e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 290795123 22 LPMGRIVEVYGPESSGKTTLTLEL---IAAAQKV-GKTCA-----FVDAEHALDPI------YAQKLGVD---------- 76
Cdd:COG3598 10 LPEGGVTLLAGPPGTGKSFLALQLaaaVAAGGPWlGRRVPpgkvlYLAAEDDRGELrrrlkaLGADLGLPfadldgrlrl 89
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 290795123 77 IDALLVSQPDTGEQALEicdALARSGAIDVLVIDSVAALTPkaeiegemGDSHMGLQARMLSQAMRKL 144
Cdd:COG3598 90 LSLAGDLDDTDDLEALE---RAIEEEGPDLVVIDPLARVFG--------GDENDAEEMRAFLNPLDRL 146
|
|
| Rad51D |
cd19489 |
RAD51D recombinase; RAD51D recombinase, a RAD51 paralog, plays an important role in DNA repair ... |
20-49 |
2.88e-03 |
|
RAD51D recombinase; RAD51D recombinase, a RAD51 paralog, plays an important role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. RAD51D, together with the other RAD51 paralogs, RAD51B, RAD51C, XRCC3, and XRCC2, helps recruit RAD51 to the break site.
Pssm-ID: 410897 [Multi-domain] Cd Length: 209 Bit Score: 37.62 E-value: 2.88e-03
10 20 30
....*....|....*....|....*....|
gi 290795123 20 GGLPMGRIVEVYGPESSGKTTLTLELIAAA 49
Cdd:cd19489 2 GGLRTGEITELVGESSSGKTQLCLTAAANV 31
|
|
| PAXNEB |
pfam05625 |
PAXNEB protein; PAXNEB or PAX6 neighbour is found in several eukaryotic organizms. PAXNED is ... |
5-40 |
6.77e-03 |
|
PAXNEB protein; PAXNEB or PAX6 neighbour is found in several eukaryotic organizms. PAXNED is an RNA polymerase II Elongator protein subunit. It is part of the HAP subcomplex of Elongator, which is a six-subunit component of the RNA polymerase II holoenzyme. The HAP subcomplex is required for Elongator structural integrity and histone acetyltransferase activity. This protein family has a P-loop-like motif and adopts a RecA-ATPase-like fold, lacking the conserved sequence signature of ATPases.
Pssm-ID: 461696 Cd Length: 359 Bit Score: 37.19 E-value: 6.77e-03
10 20 30
....*....|....*....|....*....|....*.
gi 290795123 5 TISTGSLSLDIALGaGGLPMGRIVEVygpESSGKTT 40
Cdd:pfam05625 18 TTSTGTPSLDKLLG-GGLPLGSSLLI---EEDGTTD 49
|
|
| NadR3 |
COG3172 |
Nicotinamide riboside kinase [Coenzyme transport and metabolism]; Nicotinamide riboside kinase ... |
26-45 |
8.97e-03 |
|
Nicotinamide riboside kinase [Coenzyme transport and metabolism]; Nicotinamide riboside kinase is part of the Pathway/BioSystem: NAD biosynthesis
Pssm-ID: 442405 [Multi-domain] Cd Length: 178 Bit Score: 35.95 E-value: 8.97e-03
|
| |
