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Conserved domains on  [gi|300295309|gb|ADJ96648|]
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epiglycanin [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Epiglycanin_C super family cl20615
Mucin, catalytic, TM and cytoplasmic tail region; This family represents the non-tandem repeat ...
 1519-1597 5.63e-15

Mucin, catalytic, TM and cytoplasmic tail region; This family represents the non-tandem repeat domain including cleavage site, the transmembrane helix domain, and the cytoplasmic tail of epiglycanin and related mucins.


The actual alignment was detected with superfamily member pfam14654:

Pssm-ID: 434100  Cd Length: 91  Bit Score: 71.85  E-value: 5.63e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300295309  1519 GTPVMEVKPSGSLKPWEIFLITLASVIVVMGLSAGLFIYV*RRYLSLRNAAdgIFYNSHPDPG-GSAMTPG--------- 1588
Cdd:pfam14654    2 HTPTNVIKPSGYLQPWEIILISLAAVVAAVGLFVGLSFCLRNFSFPLRNTA--IYYPHGHNLGfGWDLDPGgghgifhsl 79

                           90
                   ....*....|.
gi 300295309  1589 --SLTCSWRRP 1597
Cdd:pfam14654   80 gnSLARGGGRE 90
 
Name Accession Description Interval E-value
Epiglycanin_C pfam14654
Mucin, catalytic, TM and cytoplasmic tail region; This family represents the non-tandem repeat ...
 1519-1597 5.63e-15

Mucin, catalytic, TM and cytoplasmic tail region; This family represents the non-tandem repeat domain including cleavage site, the transmembrane helix domain, and the cytoplasmic tail of epiglycanin and related mucins.


Pssm-ID: 434100  Cd Length: 91  Bit Score: 71.85  E-value: 5.63e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300295309  1519 GTPVMEVKPSGSLKPWEIFLITLASVIVVMGLSAGLFIYV*RRYLSLRNAAdgIFYNSHPDPG-GSAMTPG--------- 1588
Cdd:pfam14654    2 HTPTNVIKPSGYLQPWEIILISLAAVVAAVGLFVGLSFCLRNFSFPLRNTA--IYYPHGHNLGfGWDLDPGgghgifhsl 79

                           90
                   ....*....|.
gi 300295309  1589 --SLTCSWRRP 1597
Cdd:pfam14654   80 gnSLARGGGRE 90
 
Name Accession Description Interval E-value
Epiglycanin_C pfam14654
Mucin, catalytic, TM and cytoplasmic tail region; This family represents the non-tandem repeat ...
 1519-1597 5.63e-15

Mucin, catalytic, TM and cytoplasmic tail region; This family represents the non-tandem repeat domain including cleavage site, the transmembrane helix domain, and the cytoplasmic tail of epiglycanin and related mucins.


Pssm-ID: 434100  Cd Length: 91  Bit Score: 71.85  E-value: 5.63e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300295309  1519 GTPVMEVKPSGSLKPWEIFLITLASVIVVMGLSAGLFIYV*RRYLSLRNAAdgIFYNSHPDPG-GSAMTPG--------- 1588
Cdd:pfam14654    2 HTPTNVIKPSGYLQPWEIILISLAAVVAAVGLFVGLSFCLRNFSFPLRNTA--IYYPHGHNLGfGWDLDPGgghgifhsl 79

                           90
                   ....*....|.
gi 300295309  1589 --SLTCSWRRP 1597
Cdd:pfam14654   80 gnSLARGGGRE 90
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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